RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy77
(75 letters)
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide
synthetase, antibiotic biosynthesis, siderophore
formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP:
e.23.1.1 PDB: 1md9_A* 1mdf_A
Length = 539
Score = 67.9 bits (167), Expect = 2e-15
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM 53
+A YKIP VEFV FP+T GK+ K L + + +K+
Sbjct: 497 LAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKL 533
>3o83_A Peptide arylation enzyme; ligase, adenylation of
2,3-dihydroxybenzoate and transfer to pantetheine
cofactor of BASF; HET: IXN; 1.90A {Acinetobacter
baumannii} PDB: 3o82_A* 3o84_A*
Length = 544
Score = 67.9 bits (167), Expect = 2e-15
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM 53
IA YK+P ++ + P T GK+ K L +
Sbjct: 506 IAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNTST 542
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate
synthetase, isochroismatase...; adenylate-forming
enzymes, ANL superfamily; HET: SVS PNS; 3.10A
{Escherichia coli}
Length = 617
Score = 66.5 bits (163), Expect = 5e-15
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM 53
IA +K+P VE V P T GK+ K L + + +
Sbjct: 500 IAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRA 536
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase
domain alternation confo change; 2.00A {Alcaligenes SP}
SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X*
2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Length = 504
Score = 64.9 bits (159), Expect = 2e-14
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQM 49
+A +K P+ + PK K+ + L +Q+
Sbjct: 470 LADFKRPKRYFILDQLPKNALNKVLRRQLVQQV 502
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase;
HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB:
4fut_A*
Length = 503
Score = 59.1 bits (144), Expect = 2e-12
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51
+A +K+P+ V FV D P+ GK+QK VL + +D
Sbjct: 466 LAKFKMPKKVIFVDDLPRNTMGKVQKNVLRETYKD 500
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein
synthetase, PSI-2, protein structure initiative; 2.30A
{Staphylococcus aureus subsp}
Length = 501
Score = 58.3 bits (142), Expect = 4e-12
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDK 52
+A YK+P++ E V P T +GK+Q+ L ++
Sbjct: 463 LAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHHH 498
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA
ligase; 1.84A {Burkholderia xenovorans}
Length = 529
Score = 57.6 bits (140), Expect = 7e-12
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQ 48
+A +K PR + FV D PKT +GKIQ++ L +Q
Sbjct: 498 LAPHKYPRDIVFVDDLPKTATGKIQRFKLREQ 529
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics,
PSI-2, protein S initiative, fatty acid synthesis; HET:
GOL; 2.00A {Rhodopseudomonas palustris}
Length = 509
Score = 57.6 bits (140), Expect = 7e-12
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVL 45
IA YK P++V FV PK G I + +
Sbjct: 467 IARYKKPKHVVFVEALPKDAKGAIDRAAV 495
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase);
ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis}
PDB: 3t5c_A 3t5b_A
Length = 517
Score = 57.2 bits (139), Expect = 1e-11
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVL 45
+A YK+P+ V F P+ +GKI K VL
Sbjct: 479 LARYKLPKKVIFAEAIPRNPTGKILKTVL 507
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain
acyl-COA synthetase, xenobiotic/medium-chain FA COA
ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A
3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Length = 570
Score = 53.4 bits (129), Expect = 2e-10
Identities = 19/35 (54%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 16 VIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQME 50
V A YK PR +EFV + PKTV+GKIQ+ L + E
Sbjct: 527 VTAPYKYPRKIEFVLNLPKTVTGKIQRAKL-RDKE 560
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel
adenylate-forming EN fold; HET: MCA AMP; 1.43A
{Streptomyces coelicolor} PDB: 3nyr_A*
Length = 505
Score = 52.6 bits (127), Expect = 4e-10
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVL 45
+A +K PR V ++ P+ GKI K L
Sbjct: 474 LAPHKRPRVVRYLDAVPRNDMGKIMKRAL 502
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics,
riken structural genomics/proteomics initiative, RSGI;
HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1
PDB: 1ult_A* 1v26_A*
Length = 541
Score = 51.7 bits (125), Expect = 7e-10
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51
A +++P F + P+T +GK K L +Q ++
Sbjct: 502 FAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKN 536
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure
initiative, PSI-II, NYSGXRC, 11193J, structural
genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Length = 549
Score = 51.1 bits (123), Expect = 2e-09
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDK 52
I+ YK R VEFV + P+T SGK+ + +L ++ +
Sbjct: 508 ISGYKRVREVEFVEELPRTASGKLLRRLLREKEAEG 543
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase,
ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina
acetivorans}
Length = 580
Score = 49.1 bits (118), Expect = 7e-09
Identities = 16/35 (45%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 16 VIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQME 50
V A YK PR +EFV + PKT+SGKI++ + + +
Sbjct: 544 VTAPYKYPRIIEFVPELPKTISGKIRRVEI-RDKD 577
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL
EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Length = 536
Score = 44.9 bits (107), Expect = 2e-07
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQ 48
+ YK + V F+ PK SGKI + L ++
Sbjct: 501 VIFYKRIKRVFFIEAIPKAPSGKILRKNLKEK 532
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase;
transferase; 3.10A {Arabidospis thaliana}
Length = 979
Score = 43.5 bits (103), Expect = 8e-07
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 18 AHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM 53
YK V F PK SGKI + L ++ + +
Sbjct: 549 VFYKRINKVFFTESIPKAPSGKILRKDLRAKLANGL 584
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel,
alpha+beta, riken structural genomics/proteomics
initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata}
PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Length = 548
Score = 41.4 bits (98), Expect = 4e-06
Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 17 IAHYKIPR-YVEFVADFPKTVSGKIQKYVLSKQMEDKMI 54
+++ K R V FV + PK ++GKI + +++ K +
Sbjct: 508 VSNAKRLRGGVRFVDEVPKGLTGKIDGRAI-REILKKPV 545
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase,
photoprotein, luminescence, aspulvinone, natural product
extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A
1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A
Length = 550
Score = 40.3 bits (95), Expect = 9e-06
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 17 IAHYKIPR-YVEFVADFPKTVSGKIQKYVLSKQMEDKMI 54
+ K R V FV + PK ++GK+ + +++ K
Sbjct: 506 VTTAKKLRGGVVFVDEVPKGLTGKLDARKI-REILIKAK 543
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl
adenylate, structural genom 2, protein structure
initiative; HET: 1ZZ; 1.85A {Legionella pneumophila
subsp} PDB: 3lnv_A*
Length = 590
Score = 32.7 bits (75), Expect = 0.006
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 18 AHYKIPRYVEFVA--DFPKTVSGKIQKYVLSKQMED 51
H + + P T SGKI++ K + D
Sbjct: 532 NHQLEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLD 567
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme
family,, structural genomics, PSI-2, protein structure
initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB:
3pbk_A*
Length = 576
Score = 31.5 bits (72), Expect = 0.014
Identities = 6/38 (15%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 16 VIAHYKIPRYVEFVA--DFPKTVSGKIQKYVLSKQMED 51
+ + + + ++ + P+T SGK + K+ +
Sbjct: 526 IQSEFGVTAAIDLLPPHSIPRTSSGKPARAEAKKRYQK 563
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming,
thioester-forming, ligase; HET: COA PRX; 1.75A
{Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A*
2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Length = 652
Score = 30.6 bits (70), Expect = 0.024
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 23 PRYVEFVADFPKTVSGKI 40
P + + PKT SGKI
Sbjct: 593 PDVLHWTDSLPKTRSGKI 610
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP
forming, related to firefly luciferase, ligase; HET:
AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Length = 663
Score = 30.2 bits (69), Expect = 0.033
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 23 PRYVEFVADFPKTVSGKIQKYVLSK 47
P+ + V D PKT SGKI + +L K
Sbjct: 609 PKLIILVDDLPKTRSGKIMRRILRK 633
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.6 bits (55), Expect = 1.6
Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYV---LSK-QMEDKMIL 55
L ++ +E ++ HY IP+ + P + ++ L + ++M L
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA,
non-ribosomal peptide synthetase, NRPS, adenylation
domain, D-alanylation; HET: AMP; 2.28A {Bacillus
subtilis} PDB: 3e7x_A*
Length = 511
Score = 25.5 bits (57), Expect = 1.8
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 20 YKIPRYVEFVADFPKTVSGKI 40
Y IPR + T +GKI
Sbjct: 472 YMIPRKFIYQDHIQMTANGKI 492
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming
domain, adenylation, D-alanine protein ligase, ATP
complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A*
3dhv_A*
Length = 512
Score = 25.2 bits (56), Expect = 2.0
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 20 YKIPRYVEFVADFPKTVSGKI 40
Y IPR + + P T +GK+
Sbjct: 473 YMIPRKFMYQSSIPMTPNGKV 493
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural
genomics, DLTA, ATP-binding, cytoplasm,
nucleotide-binding; 2.41A {Streptococcus pyogenes
serotype M6} PDB: 3lgx_A*
Length = 521
Score = 24.8 bits (55), Expect = 2.9
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 20 YKIPRYVEFVADFPKTVSGKI 40
Y +P + P T +GKI
Sbjct: 481 YMMPSKFLYRDSLPLTPNGKI 501
>3kyf_A PP4397, putative uncharacterized protein; C-DI-GMP, PILZ domain,
VCA0042, unknown function; HET: 5GP; 2.10A {Pseudomonas
putida} PDB: 2gjg_A
Length = 231
Score = 23.9 bits (51), Expect = 7.1
Identities = 7/41 (17%), Positives = 19/41 (46%)
Query: 33 PKTVSGKIQKYVLSKQMEDKMILIIAVIHCQVQAYLSGLLD 73
PK +S ++ +Q+++ +I H + + S ++
Sbjct: 4 PKVLSTPLEIAANLRQLQESHDPLIITFHDRSHRFQSYVVH 44
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate
forming; HET: PHE AMP; 1.90A {Brevibacillus brevis}
SCOP: e.23.1.1
Length = 563
Score = 23.6 bits (52), Expect = 8.0
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 20 YKIPRYVEFVADFPKTVSGKI 40
Y IP Y + P T +GKI
Sbjct: 498 YMIPSYFIQLDKMPLTSNGKI 518
>2fb0_A Conserved hypothetical protein; SAD, bacteroides thetaiotaom
structural genomics, PSI, protein structure initiative;
2.10A {Bacteroides thetaiotaomicron}
Length = 94
Score = 23.1 bits (50), Expect = 8.9
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 18 AHYKIPRYVEFVADFPKTVSGKIQKY 43
AH K + ++V + K++K+
Sbjct: 67 AHEKTAHFAQYVGIIQELAEMKLEKF 92
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.138 0.384
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,116,319
Number of extensions: 52121
Number of successful extensions: 117
Number of sequences better than 10.0: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 30
Length of query: 75
Length of database: 6,701,793
Length adjustment: 44
Effective length of query: 31
Effective length of database: 5,473,269
Effective search space: 169671339
Effective search space used: 169671339
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.3 bits)