RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy77
         (75 letters)



>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus
           subtilis [TaxId: 1423]}
          Length = 536

 Score = 53.5 bits (127), Expect = 8e-11
 Identities = 17/39 (43%), Positives = 25/39 (64%)

Query: 16  VIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMI 54
            +A YKIP  VEFV  FP+T  GK+ K  L + + +K++
Sbjct: 496 GLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKLL 534


>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168
           {Thermus thermophilus [TaxId: 274]}
          Length = 534

 Score = 51.0 bits (121), Expect = 7e-10
 Identities = 10/35 (28%), Positives = 19/35 (54%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51
            A +++P    F  + P+T +GK  K  L +Q ++
Sbjct: 495 FAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKN 529


>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 640

 Score = 49.5 bits (117), Expect = 2e-09
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDK 52
           I  +  P+ +  V D PKT SGKI + +L K +  +
Sbjct: 580 IGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGE 615


>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
           [TaxId: 28901]}
          Length = 643

 Score = 48.9 bits (116), Expect = 4e-09
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSK 47
           I     P  + +    PKT SGKI + +L K
Sbjct: 583 IGPLATPDVLHWTDSLPKTRSGKIMRRILRK 613


>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes
           sp. [TaxId: 512]}
          Length = 503

 Score = 48.1 bits (113), Expect = 7e-09
 Identities = 8/33 (24%), Positives = 16/33 (48%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQM 49
           +A +K P+    +   PK    K+ +  L +Q+
Sbjct: 470 LADFKRPKRYFILDQLPKNALNKVLRRQLVQQV 502


>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
           synthetase 1 {Bacillus brevis [TaxId: 1393]}
          Length = 514

 Score = 48.0 bits (113), Expect = 8e-09
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVL 45
           +  Y IP Y   +   P T +GKI +  L
Sbjct: 479 LPTYMIPSYFIQLDKMPLTSNGKIDRKQL 507


>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
           [TaxId: 7054]}
          Length = 541

 Score = 44.1 bits (103), Expect = 2e-07
 Identities = 9/34 (26%), Positives = 17/34 (50%)

Query: 16  VIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQM 49
           V    K+   V FV + PK ++GK+    + + +
Sbjct: 503 VTTAKKLRGGVVFVDEVPKGLTGKLDARKIREIL 536


>d1a87a_ f.1.1.1 (A:) Colicin N {Escherichia coli [TaxId: 562]}
          Length = 297

 Score = 22.2 bits (47), Expect = 10.0
 Identities = 5/29 (17%), Positives = 13/29 (44%), Gaps = 2/29 (6%)

Query: 26  VEFVADFPKTVSGKI-QKY-VLSKQMEDK 52
            E V+     +   +  KY  ++K++ + 
Sbjct: 110 SELVSGMGDKLGEYLGVKYKNVAKEVAND 138


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.138    0.384 

Gapped
Lambda     K      H
   0.267   0.0419    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 264,988
Number of extensions: 9428
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 9
Length of query: 75
Length of database: 2,407,596
Length adjustment: 42
Effective length of query: 33
Effective length of database: 1,830,936
Effective search space: 60420888
Effective search space used: 60420888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)