RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7704
(124 letters)
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1,
molecular mechanism, heme, iron, metal-binding,
monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor
A3} PDB: 3el3_A*
Length = 467
Score = 105 bits (264), Expect = 5e-28
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRHIT 61
LA HP+ + DE+ V G P ++ +++L VI E +RL PA ++ R
Sbjct: 290 LADHPEHADRIRDEVEAVTGGRP---VAFEDVRKLRHTGNVIVEAMRLRPAVWVLTRRAV 346
Query: 62 SEIQADKYTIPIG 74
+E + Y IP G
Sbjct: 347 AESELGGYRIPAG 359
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding,
monooxygenase, NADP, oxidoreductase, protein-inhibitor
complex; HET: HEM CM6; 1.50A {Mycobacterium
tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A*
2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A*
1e9x_A* 1u13_A*
Length = 455
Score = 103 bits (260), Expect = 2e-27
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRHIT 61
L H V DE+ ++ GD ++ ++++ L V+KETLRL+P I+ R
Sbjct: 272 LMRHRDAYAAVIDELDELYGDGRS--VSFHALRQIPQLENVLKETLRLHPPLIILMRVAK 329
Query: 62 SEIQADKYTIPIG 74
E + + I G
Sbjct: 330 GEFEVQGHRIHEG 342
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide,
monooxygenase, metab enzyme, oxidoreductase, heme,
cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo
sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A*
Length = 456
Score = 101 bits (255), Expect = 7e-27
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRHIT 61
L+ P+I + E+ +V+G ++ + L L++V+KE+LRLYP A R +
Sbjct: 270 LSRQPEIVARLQAEVDEVIGSKRY--LDFEDLGRLQYLSQVLKESLRLYPPAWGTFRLLE 327
Query: 62 SEIQADKYTIPIG 74
E D +P
Sbjct: 328 EETLIDGVRVPGN 340
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein,
alternative splicing, cholesterol biosynthesis,
endoplasmic reticulum, heme, iron; HET: HEM KLN BCD;
2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Length = 461
Score = 101 bits (253), Expect = 1e-26
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRHIT 61
LA +Q++ Y E V G++ + TYDQ+++L+LL R IKETLRL P I+ R
Sbjct: 279 LARDKTLQKKCYLEQKTVCGENLPPL-TYDQLKDLNLLDRCIKETLRLRPPIMIMMRMAR 337
Query: 62 SEIQADKYTIPIG 74
+ YTIP G
Sbjct: 338 TPQTVAGYTIPPG 350
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo
sapiens} PDB: 3eqm_A* 3s7s_A*
Length = 503
Score = 99.3 bits (248), Expect = 8e-26
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 1 MLALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRHI 60
++A HP +++ + EI V+G+ D IQ+L ++ I E++R P ++ R
Sbjct: 321 LIAKHPNVEEAIIKEIQTVIGERD---IKIDDIQKLKVMENFIYESMRYQPVVDLVMRKA 377
Query: 61 TSEIQADKYTIPIG 74
+ D Y + G
Sbjct: 378 LEDDVIDGYPVKKG 391
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic
resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus
megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A*
1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A*
2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A*
2ij3_A* 2ij4_A* 3hf2_A* ...
Length = 470
Score = 96.9 bits (242), Expect = 5e-25
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRHIT 61
L +P + Q+ +E +VL D P+Y Q+++L + V+ E LRL+P AP +
Sbjct: 280 LVKNPHVLQKAAEEAARVLVDPV---PSYKQVKQLKYVGMVLNEALRLWPTAPAFSLYAK 336
Query: 62 SEIQ-ADKYTIPIG 74
+ +Y + G
Sbjct: 337 EDTVLGGEYPLEKG 350
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme,
oxidoreductase, monooxygenase, sterol biosynthesis,
lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A
{Trypanosoma brucei} PDB: 3g1q_A* 3p99_A* 2wv2_A*
2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Length = 450
Score = 87.3 bits (217), Expect = 2e-21
Identities = 12/75 (16%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
Query: 2 LALHPKI--QQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRH 59
L + + + EI + + + E+ R +E++R P ++ R
Sbjct: 280 LMHPANVKHLEALRKEIEEFPAQLN----YNNVMDEMPFAERCARESIRRDPPLLMLMRK 335
Query: 60 ITSEIQADKYTIPIG 74
+ ++++ Y +P G
Sbjct: 336 VMADVKVGSYVVPKG 350
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial;
mitochondrial cytochrome P450, monotopic membrane
protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus
norvegicus} PDB: 3k9y_A*
Length = 482
Score = 85.1 bits (211), Expect = 1e-20
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRHIT 61
L+ +P+ Q+ + E+ VL D+ P + ++ + L +KE++RL P+ P R +
Sbjct: 310 LSRNPQAQRRLLQEVQSVLPDN--QTPRAEDLRNMPYLKACLKESMRLTPSVPFTTRTLD 367
Query: 62 SEIQADKYTIPIG 74
+Y +P G
Sbjct: 368 KPTVLGEYALPKG 380
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450,
cholesterol SIDE chain cleavage, structural genomics,
structural genomics consortium, SGC; HET: HEM CLR; 2.10A
{Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Length = 487
Score = 84.3 bits (209), Expect = 2e-20
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRHIT 61
+A + K+Q + E++ +Q + LL IKETLRL+P + + R++
Sbjct: 302 MARNLKVQDMLRAEVLAARHQA--QGDMATMLQLVPLLKASIKETLRLHPISVTLQRYLV 359
Query: 62 SEIQADKYTIPIG 74
+++ Y IP
Sbjct: 360 NDLVLRDYMIPAK 372
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase,
metal-binding, heme, iron; HET: HEM REA; 2.10A
{Synechocystis SP} PDB: 2ve4_A*
Length = 444
Score = 82.3 bits (204), Expect = 9e-20
Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 1 MLALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRHI 60
+L H I++ V E ++ T + ++++ L +V++E LRL P R +
Sbjct: 269 LLGQHSDIRERVRQEQNKLQLSQE---LTAETLKKMPYLDQVLQEVLRLIPPVGGGFREL 325
Query: 61 TSEIQADKYTIPIG 74
+ Q + P G
Sbjct: 326 IQDCQFQGFHFPKG 339
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty
acid biosynthesis, heme, iron, lipid synthesis, lyase,
metal-binding; HET: HEM; 1.80A {Parthenium argentatum}
PDB: 3dam_A* 3dbm_A*
Length = 473
Score = 79.1 bits (195), Expect = 1e-18
Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 2 LAL-HPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRHI 60
+ L + ++ +EI + + T + I+++ L V+ E+LR+ P P
Sbjct: 292 IGLAGENLHTQLAEEIRGAIKSYGDGNVTLEAIEQMPLTKSVVYESLRIEPPVPPQYGKA 351
Query: 61 TSEIQAD----KYTIPIG 74
S + + + G
Sbjct: 352 KSNFTIESHDATFEVKKG 369
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold,
hemoprotein, monoo cytochrome P450 reductase,
endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo
sapiens} PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A*
1tqn_A* 3ua1_A* 3tjs_A*
Length = 485
Score = 77.6 bits (192), Expect = 4e-18
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRHIT 61
LA HP +QQ++ +EI VL + PTYD + ++ L V+ ETLRL+P A + R
Sbjct: 299 LATHPDVQQKLQEEIDAVLPNKAP--PTYDTVLQMEYLDMVVNETLRLFPIAMRLERVCK 356
Query: 62 SEIQADKYTIPIG 74
+++ + IP G
Sbjct: 357 KDVEINGMFIPKG 369
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome
P450, endoplasmic reticulum, fatty acid biosynthesis,
heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo
sapiens} PDB: 2iag_A*
Length = 498
Score = 75.2 bits (185), Expect = 3e-17
Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 11/83 (13%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVP-----TYDQIQELHLLTRVIKETLRLYPAAPII 56
L +P+ V E+ +L + V + +L V+ E+LRL A I
Sbjct: 289 LLKNPEALAAVRGELESILWQAEQPVSQTTTLPQKVLDSTPVLDSVLSESLRLTAAPFIT 348
Query: 57 GRHITSEI-----QADKYTIPIG 74
R + ++ ++ + G
Sbjct: 349 -REVVVDLAMPMADGREFNLRRG 370
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid
biosynthesis, heme, iron, synthesis, lyase,
metal-binding, oxylipin biosynthesis; HET: HEM T25;
1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A*
3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Length = 495
Score = 75.3 bits (185), Expect = 3e-17
Identities = 12/78 (15%), Positives = 28/78 (35%), Gaps = 5/78 (6%)
Query: 1 MLALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRHI 60
+ ++ + +EI V+ + + T I+++ L V+ E LR P
Sbjct: 310 IGRAGHQVHNRLAEEIRSVIKSNGGEL-TMGAIEKMELTKSVVYECLRFEPPVTAQYGRA 368
Query: 61 TSEIQ----ADKYTIPIG 74
++ + + G
Sbjct: 369 KKDLVIESHDAAFKVKAG 386
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus
thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Length = 389
Score = 74.2 bits (183), Expect = 6e-17
Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 20/73 (27%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRHIT 61
L+ P Q+ V + L +E LRLYP A I+ R +
Sbjct: 237 LSHRPDWQKRVAESEEAALA--------------------AFQEALRLYPPAWILTRRLE 276
Query: 62 SEIQADKYTIPIG 74
+ + +P G
Sbjct: 277 RPLLLGEDRLPPG 289
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase,
structural genomics, structural genomics consortium,
SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo
sapiens} PDB: 3sn5_A*
Length = 491
Score = 71.2 bits (175), Expect = 8e-16
Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVP--------TYDQIQELHLLTRVIKETLRLYPAA 53
+ +P+ + +E+ + L + + V + ++ +L +L +IKE+LRL A+
Sbjct: 284 MIRNPEAMKAATEEVKRTLENAGQKVSLEGNPICLSQAELNDLPVLDSIIKESLRLSSAS 343
Query: 54 PIIGRH---ITSEIQADKYTIPIG 74
I T ++ Y I
Sbjct: 344 LNIRTAKEDFTLHLEDGSYNIRKD 367
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase,
oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas
paucimobilis} PDB: 3awq_A* 3awp_A*
Length = 415
Score = 64.7 bits (158), Expect = 1e-13
Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Query: 15 EIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRHITSEIQADKYTIPIG 74
+ L +Q+ ++E R YP P + + + + + P G
Sbjct: 252 FVAHALQTCSGI--RAALVQQPDYAELFVQEVRRFYPFFPAVVARASQDFEWEGMAFPEG 309
Query: 75 RK 76
R+
Sbjct: 310 RQ 311
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450
8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio}
PDB: 3b99_A*
Length = 475
Score = 63.1 bits (154), Expect = 5e-13
Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 9/75 (12%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRHIT 61
L HP+ + V +EI + + ++ + + V+ ETLRL AA I
Sbjct: 280 LLTHPEALRAVREEI-----QGGKHLRLEERQKNTPVFDSVLWETLRLTAAALITRDVTQ 334
Query: 62 S----EIQADKYTIP 72
+Y +
Sbjct: 335 DKKICLSNGQEYHLR 349
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid
complex, riken structural genomics/proteomics
initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus
subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Length = 417
Score = 60.5 bits (147), Expect = 5e-12
Identities = 11/74 (14%), Positives = 20/74 (27%), Gaps = 19/74 (25%)
Query: 1 MLALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRHI 60
L HPK ++ + ++E R YP P +G +
Sbjct: 257 ALHEHPKYKEWLRSG-------------------NSREREMFVQEVRRYYPFGPFLGALV 297
Query: 61 TSEIQADKYTIPIG 74
+ + G
Sbjct: 298 KKDFVWNNCEFKKG 311
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET:
HEM 3QZ; 3.00A {Bos taurus}
Length = 496
Score = 52.2 bits (126), Expect = 3e-09
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 2 LALHPKIQQEVYDEIVQVLG-DDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRHI 60
L HP+IQ+ + +E+ + LG + TY L LL I E LRL P P+ H
Sbjct: 306 LLHHPEIQRRLQEELDRELGPGASCSRVTYKDRARLPLLNATIAEVLRLRPVVPLALPHR 365
Query: 61 TSE-IQADKYTIP 72
T+ Y IP
Sbjct: 366 TTRPSSIFGYDIP 378
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1,
P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme
protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Length = 494
Score = 49.5 bits (119), Expect = 3e-08
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRHIT 61
L +P++++++Y+EI Q +G PT L LL I+E LRL P AP++ H
Sbjct: 300 LLHNPQVKKKLYEEIDQNVG--FSRTPTISDRNRLLLLEATIREVLRLRPVAPMLIPHKA 357
Query: 62 SE-IQADKYTIP 72
+ ++ +
Sbjct: 358 NVDSSIGEFAVD 369
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase,
alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase;
HET: HEM BHF; 2.70A {Homo sapiens}
Length = 507
Score = 47.6 bits (114), Expect = 1e-07
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRHIT 61
+P +Q V E+ QV+G + +P L + + E +R P+ H T
Sbjct: 306 FTRYPDVQTRVQAELDQVVG--RDRLPCMGDQPNLPYVLAFLYEAMRFSSFVPVTIPHAT 363
Query: 62 SE-IQADKYTIP 72
+ Y IP
Sbjct: 364 TANTSVLGYHIP 375
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing
enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8-
benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo
sapiens}
Length = 495
Score = 46.8 bits (112), Expect = 2e-07
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRHIT 61
L P+IQ+++ E+ V+G E P +L L I ET R P H T
Sbjct: 309 LVTKPEIQRKIQKELDTVIG--RERRPRLSDRPQLPYLEAFILETFRHSSFLPFTIPHST 366
Query: 62 SE-IQADKYTIP 72
+ + + IP
Sbjct: 367 TRDTTLNGFYIP 378
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug
metabolism, structural genomics, structural genomics
consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens}
SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Length = 481
Score = 45.6 bits (109), Expect = 6e-07
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRHIT 61
+AL+P IQ +V EI ++G P P++D ++ V+ E LR P+ H T
Sbjct: 300 MALYPNIQGQVQKEIDLIMG--PNGKPSWDDKCKMPYTEAVLHEVLRFCNIVPLGIFHAT 357
Query: 62 SE-IQADKYTIP 72
SE Y+IP
Sbjct: 358 SEDAVVRGYSIP 369
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase;
HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Length = 479
Score = 45.6 bits (109), Expect = 7e-07
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRHIT 61
+ LHP +Q+ V EI V+G P + T VI E R P+ H+T
Sbjct: 299 MILHPDVQRRVQQEIDDVIG--QVRRPEMGDQAHMPYTTAVIHEVQRFGDIVPLGVTHMT 356
Query: 62 SE-IQADKYTIP 72
S I+ + IP
Sbjct: 357 SRDIEVQGFRIP 368
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase,
acetaminophen, oxidoreductase, heme, endoplasmic
reticulum, iron, membrane; HET: HEM; 2.20A {Homo
sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Length = 476
Score = 44.5 bits (106), Expect = 1e-06
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRHIT 61
L +P+I++++++EI +V+G P +P QE+ + V+ E R P H
Sbjct: 294 LMKYPEIEEKLHEEIDRVIG--PSRIPAIKDRQEMPYMDAVVHEIQRFITLVPSNLPHEA 351
Query: 62 SE-IQADKYTIP 72
+ Y IP
Sbjct: 352 TRDTIFRGYLIP 363
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP
LM2, cytochro monooxygenase; HET: HEM; 1.60A
{Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A*
2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A*
3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Length = 476
Score = 44.1 bits (105), Expect = 2e-06
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRHIT 61
+ +P + + V EI QV+G P D ++ VI E RL P H
Sbjct: 295 MLKYPHVTERVQKEIEQVIG--SHRPPALDDRAKMPYTDAVIHEIQRLGDLIPFGVPHTV 352
Query: 62 SE-IQADKYTIP 72
++ Q Y IP
Sbjct: 353 TKDTQFRGYVIP 364
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme,
oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP:
a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A*
2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Length = 477
Score = 44.1 bits (105), Expect = 2e-06
Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRHIT 61
L HP++ +V +EI +V+G P + V+ E R P H
Sbjct: 296 LLKHPEVTAKVQEEIERVIG--RNRSPCMQDRSHMPYTDAVVHEVQRYIDLLPTSLPHAV 353
Query: 62 SE-IQADKYTIP 72
+ I+ Y IP
Sbjct: 354 TCDIKFRNYLIP 365
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing
enzyme, coumarin 7-hydroxylase, nicotine oxidase,
oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB:
1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A*
2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Length = 476
Score = 44.1 bits (105), Expect = 3e-06
Identities = 15/72 (20%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRHIT 61
L HP+++ +V++EI +V+G P ++ ++ + VI E R P+
Sbjct: 295 LMKHPEVEAKVHEEIDRVIG--KNRQPKFEDRAKMPYMEAVIHEIQRFGDVIPMSLARRV 352
Query: 62 SE-IQADKYTIP 72
+ + + +P
Sbjct: 353 KKDTKFRDFFLP 364
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 36.7 bits (84), Expect = 6e-04
Identities = 9/50 (18%), Positives = 28/50 (56%)
Query: 75 RKENKKKKQKKKQTKKQKKQKKKKQKKQKMKKQKKTKKKKKKKQKKQKKK 124
R+E +K+ Q+ K +Q+ +++ K+ +++ + + ++ +K K +
Sbjct: 91 REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRI 140
Score = 30.5 bits (68), Expect = 0.086
Identities = 10/49 (20%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 77 ENKKKKQKKKQTKKQKKQKKKKQKKQKMKKQ-KKTKKKKKKKQKKQKKK 124
E+ +K +++++ + Q+ K +Q+ +++ KK ++ ++Q +Q +K
Sbjct: 85 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEK 133
Score = 29.0 bits (64), Expect = 0.30
Identities = 8/53 (15%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 73 IGRKENKKKKQKKKQTKKQKKQKKK--KQKKQKMKKQKKTKKKKKKKQKKQKK 123
+ + K +++ +K KK ++ +++ ++++K K + K +Q
Sbjct: 98 LQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPD 150
Score = 24.7 bits (53), Expect = 9.4
Identities = 4/41 (9%), Positives = 22/41 (53%)
Query: 82 KQKKKQTKKQKKQKKKKQKKQKMKKQKKTKKKKKKKQKKQK 122
+ ++ + +K +++++K+ + +++ ++K +K
Sbjct: 78 DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKK 118
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 36.9 bits (86), Expect = 7e-04
Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 56 IGRHITSEIQADKYTIPIGRKENKKKKQKKKQTKKQKKQKKKKQKKQKMKKQKKTK 111
+G+ E+ Y + +G + K + K + K+K+K + MKK+ +
Sbjct: 1 MGKAENYEL----YQVELGPGPSGDMAAKMSKKKAGRGGGKRKEKLENMKKEMEIN 52
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase,
cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Length = 381
Score = 36.9 bits (86), Expect = 7e-04
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 22/76 (28%)
Query: 1 MLAL--HPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGR 58
+LA+ P + + + DDP R + E LRL+PA + R
Sbjct: 235 VLAVSAEP--------GLAERIADDPAAAQ------------RTVAEVLRLHPALHLERR 274
Query: 59 HITSEIQADKYTIPIG 74
T+E++ ++ I G
Sbjct: 275 TATAEVRLGEHVIGEG 290
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase,
metal-binding, AN biosynthesis, TIE-ROD mechanism of
action; HET: HEM; 1.59A {Saccharopolyspora erythraea}
PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Length = 411
Score = 36.1 bits (84), Expect = 0.001
Identities = 16/78 (20%), Positives = 25/78 (32%), Gaps = 22/78 (28%)
Query: 1 MLAL--HPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGR 58
+ L HP +D +DP +P +++E LR P P + R
Sbjct: 254 VRTLDEHP----AHWDA----AAEDPGRIPA------------IVEEVLRYRPPFPQMQR 293
Query: 59 HITSEIQADKYTIPIGRK 76
T + IP
Sbjct: 294 TTTKATEVAGVPIPADVM 311
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase,
metal-binding, oxidoreductase, hypothetical protein;
HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB:
2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Length = 414
Score = 36.1 bits (84), Expect = 0.001
Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 22/78 (28%)
Query: 1 MLAL--HPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGR 58
M L P + ++L DDPE +P ++E LRL + R
Sbjct: 263 MPLLHRRP--------DQRRLLLDDPEGIPD------------AVEELLRLTSPVQGLAR 302
Query: 59 HITSEIQADKYTIPIGRK 76
T ++ TIP GR+
Sbjct: 303 TTTRDVTIGDTTIPAGRR 320
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 35.6 bits (82), Expect = 0.002
Identities = 6/49 (12%), Positives = 18/49 (36%)
Query: 76 KENKKKKQKKKQTKKQKKQKKKKQKKQKMKKQKKTKKKKKKKQKKQKKK 124
K+ K+ Q K + K++ + + + + + K + +
Sbjct: 628 KDTWGKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQP 676
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12;
1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Length = 418
Score = 35.3 bits (82), Expect = 0.002
Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 22/76 (28%)
Query: 1 MLAL--HPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGR 58
LA+ P L D VI+ET+R P ++ R
Sbjct: 269 ALAMLRTP--------GQWAALAADGSRASA------------VIEETMRYDPPVQLVSR 308
Query: 59 HITSEIQADKYTIPIG 74
+ ++ +T+P G
Sbjct: 309 YAGDDLTIGTHTVPKG 324
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein,
oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB:
3nc5_A* 3nc6_A* 3nc7_A*
Length = 441
Score = 35.4 bits (82), Expect = 0.002
Identities = 15/76 (19%), Positives = 24/76 (31%), Gaps = 22/76 (28%)
Query: 1 MLAL--HPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGR 58
+ L +P E + + D L+ R I ETLR P +I R
Sbjct: 282 IYHLLNNP--------EQMNDVLADRS------------LVPRAIAETLRYKPPVQLIPR 321
Query: 59 HITSEIQADKYTIPIG 74
++ + I
Sbjct: 322 QLSQDTVVGGMEIKKD 337
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A
{Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A*
4dnz_A*
Length = 412
Score = 34.5 bits (80), Expect = 0.005
Identities = 13/78 (16%), Positives = 21/78 (26%), Gaps = 22/78 (28%)
Query: 1 MLAL--HPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGR 58
+ L P + + L DP +E +R R
Sbjct: 264 VYCLARFP----DEFAR----LRADPSLARN------------AFEEAVRFESPVQTFFR 303
Query: 59 HITSEIQADKYTIPIGRK 76
T +++ TI G K
Sbjct: 304 TTTRDVELAGATIGEGEK 321
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX,
bioremediation, electron transport; HET: HEM; 1.49A
{Rhodococcus} PDB: 2wiv_A*
Length = 394
Score = 34.5 bits (80), Expect = 0.005
Identities = 11/76 (14%), Positives = 20/76 (26%), Gaps = 22/76 (28%)
Query: 1 MLAL--HPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGR 58
+ P E+ +D +I E +R+ P R
Sbjct: 246 IELFARRP--------EVFTAFRNDESARAA------------IINEMVRMDPPQLSFLR 285
Query: 59 HITSEIQADKYTIPIG 74
T +++ I G
Sbjct: 286 FPTEDVEIGGVLIEAG 301
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme,
oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB:
2z3u_A* 3a1l_A*
Length = 425
Score = 34.2 bits (79), Expect = 0.006
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 22/76 (28%)
Query: 1 MLAL--HPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGR 58
+L L H +++ L PE+ P ++E +R P + R
Sbjct: 267 VLTLRAHR--------DVLDELRTTPESTPA------------AVEELMRYDPPVQAVTR 306
Query: 59 HITSEIQADKYTIPIG 74
+I+ + IP G
Sbjct: 307 WAYEDIRLGDHDIPRG 322
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta
binding protein; HET: HEM; 2.47A {Micromonospora
echinospora}
Length = 397
Score = 33.7 bits (78), Expect = 0.007
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 22/76 (28%)
Query: 1 MLAL--HPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGR 58
+L+L HP + + +L P+ LL + ++E LR P+ R
Sbjct: 246 VLSLLAHP--------DQLDLLRRRPD------------LLAQAVEECLRYDPSVQSNTR 285
Query: 59 HITSEIQADKYTIPIG 74
+ +++ +
Sbjct: 286 QLDVDVELRGRRLRRD 301
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein
complex, cytochrome P450 fold, carrier protein, 4-helix
bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus
subtilis} PDB: 3ejd_B* 3eje_B*
Length = 404
Score = 33.7 bits (78), Expect = 0.009
Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 22/76 (28%)
Query: 1 MLAL--HPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGR 58
+L L HP E + L ++P+ + T ++E LR + R
Sbjct: 247 VLCLLQHP--------EQLLKLRENPDLIGT------------AVEECLRYESPTQMTAR 286
Query: 59 HITSEIQADKYTIPIG 74
+ +I TI G
Sbjct: 287 VASEDIDICGVTIRQG 302
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin,
oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora
erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A*
1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Length = 404
Score = 33.0 bits (76), Expect = 0.015
Identities = 13/76 (17%), Positives = 22/76 (28%), Gaps = 22/76 (28%)
Query: 1 MLAL--HPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGR 58
L HP + + ++ DP +P ++E LR R
Sbjct: 254 TYLLLTHP--------DQLALVRRDPSALPN------------AVEEILRYIAPPETTTR 293
Query: 59 HITSEIQADKYTIPIG 74
E++ IP
Sbjct: 294 FAAEEVEIGGVAIPQY 309
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 32.7 bits (75), Expect = 0.021
Identities = 5/50 (10%), Positives = 11/50 (22%)
Query: 75 RKENKKKKQKKKQTKKQKKQKKKKQKKQKMKKQKKTKKKKKKKQKKQKKK 124
+ T Q K K + + + + Q +
Sbjct: 906 SVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTE 955
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 31.7 bits (71), Expect = 0.038
Identities = 10/49 (20%), Positives = 25/49 (51%)
Query: 76 KENKKKKQKKKQTKKQKKQKKKKQKKQKMKKQKKTKKKKKKKQKKQKKK 124
+ + + + + ++K++ KQ + K + + KKKK+ + K K+
Sbjct: 55 GQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKR 103
Score = 31.3 bits (70), Expect = 0.058
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 79 KKKKQKKKQTKKQKKQKKKKQKKQKMKKQKKTKKKKKKKQKKQKK 123
+ ++K+ ++ K KK K Q+ KK++ K K K+Q+ K
Sbjct: 65 PRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALK 109
Score = 30.2 bits (67), Expect = 0.13
Identities = 9/53 (16%), Positives = 26/53 (49%)
Query: 72 PIGRKENKKKKQKKKQTKKQKKQKKKKQKKQKMKKQKKTKKKKKKKQKKQKKK 124
+ ++K++ + + K+ K ++KK+K + K K+++ K + +
Sbjct: 62 NPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADR 114
Score = 29.8 bits (66), Expect = 0.19
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 75 RKENKKKKQKKKQTKKQKKQKKKKQKKQKMKKQKKTKKKKKKKQKKQKK 123
+ + + + + +QKKQ K+ K K K ++ KKK+ K K K+
Sbjct: 55 GQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKR 103
Score = 29.4 bits (65), Expect = 0.24
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 75 RKENKKKKQKKKQTKKQKKQKKKKQKKQKMKKQKKTKKKKKKKQKKQ 121
R +N + + +Q K+ KQ K +K + +K+KK K K ++++
Sbjct: 59 RPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQR 105
Score = 29.4 bits (65), Expect = 0.26
Identities = 9/49 (18%), Positives = 24/49 (48%)
Query: 75 RKENKKKKQKKKQTKKQKKQKKKKQKKQKMKKQKKTKKKKKKKQKKQKK 123
+ + + +K++ K+ + K+ ++KK K+ K K K+++
Sbjct: 57 ATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQR 105
Score = 29.4 bits (65), Expect = 0.28
Identities = 11/53 (20%), Positives = 26/53 (49%)
Query: 72 PIGRKENKKKKQKKKQTKKQKKQKKKKQKKQKMKKQKKTKKKKKKKQKKQKKK 124
+ + + +++ + K+ K K+ K + KK+K+ K K K+++ K
Sbjct: 57 ATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALK 109
>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A
{Barmah forest virus}
Length = 253
Score = 31.5 bits (71), Expect = 0.049
Identities = 15/43 (34%), Positives = 27/43 (62%)
Query: 80 KKKQKKKQTKKQKKQKKKKQKKQKMKKQKKTKKKKKKKQKKQK 122
+ KQK+K+ +K+ K+ + K+ K +K T+KKK K K+ +
Sbjct: 54 QPKQKQKRAQKKPKKTPPPKPKKTQKPKKPTQKKKSKPGKRMR 96
Score = 30.0 bits (67), Expect = 0.14
Identities = 17/73 (23%), Positives = 34/73 (46%)
Query: 51 PAAPIIGRHITSEIQADKYTIPIGRKENKKKKQKKKQTKKQKKQKKKKQKKQKMKKQKKT 110
P AP R S++Q + + K+K+++ ++ K+ K K+ ++ K +K
Sbjct: 28 PPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQKKPKKTPPPKPKKTQKPKKPTQKK 87
Query: 111 KKKKKKKQKKQKK 123
K K K+ + K
Sbjct: 88 KSKPGKRMRNCMK 100
Score = 26.1 bits (57), Expect = 3.7
Identities = 9/43 (20%), Positives = 21/43 (48%)
Query: 75 RKENKKKKQKKKQTKKQKKQKKKKQKKQKMKKQKKTKKKKKKK 117
+K+ KK K + ++ K+ +K+K + K+ + K +
Sbjct: 63 QKKPKKTPPPKPKKTQKPKKPTQKKKSKPGKRMRNCMKIENDC 105
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 30.7 bits (68), Expect = 0.082
Identities = 9/50 (18%), Positives = 28/50 (56%)
Query: 75 RKENKKKKQKKKQTKKQKKQKKKKQKKQKMKKQKKTKKKKKKKQKKQKKK 124
R+E +K+ Q+ K +Q+ +++ K+ +++ + + ++ +K K +
Sbjct: 106 REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRI 155
Score = 26.0 bits (56), Expect = 3.4
Identities = 7/48 (14%), Positives = 24/48 (50%)
Query: 76 KENKKKKQKKKQTKKQKKQKKKKQKKQKMKKQKKTKKKKKKKQKKQKK 123
+K +Q+ ++ K+ ++ +++ ++++K K + K +Q
Sbjct: 118 AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPD 165
Score = 24.9 bits (53), Expect = 7.5
Identities = 12/74 (16%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 51 PAAPIIGRHITSEIQADKYTIPIGRKENKKKKQK-KKQTKKQKKQKKKKQKKQKMKKQKK 109
A + AD Y ++ + +K ++Q+K+ ++ K+ +Q+
Sbjct: 68 GATVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEW 127
Query: 110 TKKKKKKKQKKQKK 123
+K KK ++ ++
Sbjct: 128 REKAKKDLEEWNQR 141
>2f2l_X Peptidoglycan recognition protein-LC isoform LCX;
protein-peptidoglycan complex, membrane protein, immune
SYST; HET: NAG HSQ MLD CIT; 2.10A {Drosophila
melanogaster} SCOP: d.118.1.1
Length = 167
Score = 30.1 bits (68), Expect = 0.11
Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 19 VLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRH 59
+G P Q++ LL + +L + G H
Sbjct: 101 FIGTFTTRKPNERQLEACQLLLQEGVRLKKLTTNYRLYG-H 140
>2rkq_A Peptidoglycan-recognition protein-SD; innate immunity, TOLL,
pattern recognition, PGRP, glycoprotein, immune
response, secreted,; 1.50A {Drosophila melanogaster}
Length = 169
Score = 30.2 bits (68), Expect = 0.11
Identities = 7/41 (17%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 19 VLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRH 59
+G+ E P + + L + +L ++G H
Sbjct: 102 FIGNFEERAPNKEALDAAKELLEQAVKQAQLVEGYKLLG-H 141
>2xz4_A Peptidoglycan-recognition protein LF; immune system, innate
immunity; HET: 1PG; 1.72A {Drosophila melanogaster}
Length = 180
Score = 30.2 bits (68), Expect = 0.11
Identities = 10/41 (24%), Positives = 12/41 (29%), Gaps = 1/41 (2%)
Query: 19 VLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRH 59
+G P QI+ L RL P I H
Sbjct: 108 FIGTFVNMEPPARQIEAAKRLMDEGVRLHRLQPDYHIYA-H 147
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.14
Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 24/104 (23%)
Query: 3 ALHPKIQQEVYDEIVQVLGDD---PETV--------PTYDQ---IQELH---LLTRVIKE 45
L P ++++D + V P + D + +LH L+ + KE
Sbjct: 365 VLEPAEYRKMFDRLS-VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 46 -TLRLYPAAPIIGRHITSEIQA-----DKYTIPIGRKENKKKKQ 83
T+ + + + +E D Y IP +
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467
Score = 28.3 bits (62), Expect = 0.68
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 6 PKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPII 56
P + +Y E L +D + Y + L ++ + L L PA ++
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKY-NVSRLQPYLKLRQALLELRPAKNVL 154
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 29.9 bits (67), Expect = 0.19
Identities = 9/51 (17%), Positives = 23/51 (45%)
Query: 74 GRKENKKKKQKKKQTKKQKKQKKKKQKKQKMKKQKKTKKKKKKKQKKQKKK 124
++ + +Q ++ + K++ + + KKK+KK+KK+
Sbjct: 57 DKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKR 107
Score = 29.9 bits (67), Expect = 0.21
Identities = 12/51 (23%), Positives = 24/51 (47%)
Query: 74 GRKENKKKKQKKKQTKKQKKQKKKKQKKQKMKKQKKTKKKKKKKQKKQKKK 124
G ++ +Q ++ + K++ + + KKKKKKK+K+ K
Sbjct: 61 GASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKV 111
Score = 28.0 bits (62), Expect = 0.84
Identities = 9/51 (17%), Positives = 20/51 (39%)
Query: 72 PIGRKENKKKKQKKKQTKKQKKQKKKKQKKQKMKKQKKTKKKKKKKQKKQK 122
+ + ++ + ++ + + +KK KKKKK+ K Q
Sbjct: 63 SVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQT 113
Score = 27.6 bits (61), Expect = 1.1
Identities = 9/53 (16%), Positives = 21/53 (39%)
Query: 72 PIGRKENKKKKQKKKQTKKQKKQKKKKQKKQKMKKQKKTKKKKKKKQKKQKKK 124
P + ++ + + K++ + + KKKK+KK+K+
Sbjct: 56 PDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRG 108
Score = 26.8 bits (59), Expect = 1.9
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 65 QADKYTIPIGRKENKKKKQKKKQTKKQKKQKKKKQKKQKMKKQK 108
Q ++ + ++ + K+KKKK+KK+ K Q
Sbjct: 70 QLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQT 113
Score = 26.8 bits (59), Expect = 2.5
Identities = 13/61 (21%), Positives = 26/61 (42%)
Query: 61 TSEIQADKYTIPIGRKENKKKKQKKKQTKKQKKQKKKKQKKQKMKKQKKTKKKKKKKQKK 120
E + DK + + ++ ++ + K++ + + KK KKKKKK+ K
Sbjct: 51 AGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPK 110
Query: 121 Q 121
Sbjct: 111 V 111
Score = 24.9 bits (54), Expect = 9.2
Identities = 9/58 (15%), Positives = 28/58 (48%)
Query: 67 DKYTIPIGRKENKKKKQKKKQTKKQKKQKKKKQKKQKMKKQKKTKKKKKKKQKKQKKK 124
++ + KKK++KKK++K +++ K+ + ++ ++ + K++
Sbjct: 24 EEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKER 81
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 30.0 bits (67), Expect = 0.21
Identities = 9/46 (19%), Positives = 16/46 (34%)
Query: 79 KKKKQKKKQTKKQKKQKKKKQKKQKMKKQKKTKKKKKKKQKKQKKK 124
KK K + + K + + KTK+K K + +
Sbjct: 635 KKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQ 680
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 29.5 bits (66), Expect = 0.30
Identities = 11/48 (22%), Positives = 29/48 (60%)
Query: 75 RKENKKKKQKKKQTKKQKKQKKKKQKKQKMKKQKKTKKKKKKKQKKQK 122
KEN+K+++ +++ ++ K K+K +K++ K+QK+ + + +
Sbjct: 380 VKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDET 427
>2y9y_B IOC3, ISWI one complex protein 3; transcription, nuclear protein
complex, chromatin remodeling nucleosome remodeling;
3.25A {Saccharomyces cerevisiae} PDB: 2y9z_B
Length = 624
Score = 29.1 bits (64), Expect = 0.36
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 81 KKQKKKQTKKQKKQKKKKQKKQKMKKQKKTKKKKKKKQKKQKKK 124
+ KKK KQ K+ KK +K++ K+ K + K K +K +
Sbjct: 332 IRSKKKHFVKQLKEGKKPDLSRKLEILKEIKAELKNAVKSEKDE 375
>1oht_A CG14704 protein; peptidoglycan-recognition protein-LB isoform 2,
hydrolase; HET: TLA; 2.0A {Drosophila melanogaster}
SCOP: d.118.1.1
Length = 215
Score = 28.7 bits (64), Expect = 0.37
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 19 VLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRH 59
++GD +P + L + PA ++G H
Sbjct: 113 LIGDWRTELPPKQMLDAAKNLIAFGVFKGYIDPAYKLLG-H 152
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.38
Identities = 8/34 (23%), Positives = 18/34 (52%), Gaps = 8/34 (23%)
Query: 34 QELHLLTRVIKETLRLY-P-AAPIIGRHITSEIQ 65
Q L + ++ +L+LY +AP + I + ++
Sbjct: 20 QAL----KKLQASLKLYADDSAPALA--IKATME 47
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 29.0 bits (65), Expect = 0.39
Identities = 10/51 (19%), Positives = 28/51 (54%)
Query: 74 GRKENKKKKQKKKQTKKQKKQKKKKQKKQKMKKQKKTKKKKKKKQKKQKKK 124
+ + +KKK +++ +++ ++++ +QK++ +K T K KK +
Sbjct: 944 QQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILI 994
Score = 25.2 bits (55), Expect = 9.0
Identities = 7/47 (14%), Positives = 29/47 (61%)
Query: 75 RKENKKKKQKKKQTKKQKKQKKKKQKKQKMKKQKKTKKKKKKKQKKQ 121
R KK++ ++ + + + ++++++ Q+++ +KK +++ ++Q
Sbjct: 917 RLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQ 963
Score = 25.2 bits (55), Expect = 9.2
Identities = 6/51 (11%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 75 RKENKKKKQKKKQTKKQKKQKKKKQKK-QKMKKQKKTKKKKKKKQKKQKKK 124
+ E + + ++ + +K++ ++ +M+ + + ++++ ++ + +KKK
Sbjct: 902 QAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKK 952
>1sk4_A Peptidoglycan recognition protein I-alpha; alpha/beta MIX, immune
system; 1.65A {Homo sapiens} SCOP: d.118.1.1 PDB:
2aph_A* 1sk3_A* 1twq_A* 2eav_A 2eax_A*
Length = 163
Score = 28.2 bits (63), Expect = 0.47
Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 19 VLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRH 59
+G E P ++ L + L P ++G H
Sbjct: 99 FIGYFVEKPPNAAALEAAQDLIQCAVVEGYLTPNYLLMG-H 138
>1s2j_A Peptidoglycan recognition protein SA CG11709-PA; mixed beta-sheet,
PI-helix (ONE turn), hydrolase; 2.20A {Drosophila
melanogaster} SCOP: d.118.1.1
Length = 209
Score = 28.3 bits (63), Expect = 0.52
Identities = 6/41 (14%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 19 VLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRH 59
+G+ + +P+ +Q L + L +I
Sbjct: 137 FIGNFVDKLPSDAALQAAKDLLACGVQQGELSEDYALIA-G 176
>2f2l_A Peptidoglycan-recognition protein-LC isoform LCA;
protein-peptidoglycan complex, membrane protein, immune
SYST; HET: NAG HSQ MLD CIT; 2.10A {Drosophila
melanogaster} SCOP: d.118.1.1 PDB: 1z6i_A*
Length = 167
Score = 27.9 bits (62), Expect = 0.58
Identities = 6/41 (14%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 19 VLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRH 59
+G P+ Q+ LL + ++ P+
Sbjct: 102 YIGSFKTIQPSAKQLSVTRLLLERGVKLGKIAPSYRFTA-S 141
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap
DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A
{Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Length = 379
Score = 28.3 bits (63), Expect = 0.59
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 6/52 (11%)
Query: 79 KKKKQKKKQT------KKQKKQKKKKQKKQKMKKQKKTKKKKKKKQKKQKKK 124
K +Q Q K K+K+ + K K K K K ++ K
Sbjct: 328 SKSRQGSTQGRLDDFFKVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
Score = 27.9 bits (62), Expect = 0.97
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 7/52 (13%)
Query: 75 RKENKKKKQ-------KKKQTKKQKKQKKKKQKKQKMKKQKKTKKKKKKKQK 119
K + Q K + K+K+ + K KK K K K+ K
Sbjct: 328 SKSRQGSTQGRLDDFFKVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 28.2 bits (63), Expect = 0.73
Identities = 9/32 (28%), Positives = 23/32 (71%)
Query: 75 RKENKKKKQKKKQTKKQKKQKKKKQKKQKMKK 106
KEN+K+++ +++ ++ K K+K +K++ K+
Sbjct: 309 VKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 27.8 bits (62), Expect = 0.82
Identities = 8/35 (22%), Positives = 22/35 (62%)
Query: 86 KQTKKQKKQKKKKQKKQKMKKQKKTKKKKKKKQKK 120
Q K+ +++++ ++K + K K K +K++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 27.0 bits (60), Expect = 1.7
Identities = 6/35 (17%), Positives = 23/35 (65%)
Query: 82 KQKKKQTKKQKKQKKKKQKKQKMKKQKKTKKKKKK 116
Q K+ +K+++ ++K ++ + K++ + ++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 26.6 bits (59), Expect = 2.4
Identities = 6/35 (17%), Positives = 22/35 (62%)
Query: 90 KQKKQKKKKQKKQKMKKQKKTKKKKKKKQKKQKKK 124
Q ++ +K+++ + K ++ K+K ++++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 25.9 bits (57), Expect = 3.8
Identities = 6/35 (17%), Positives = 23/35 (65%)
Query: 83 QKKKQTKKQKKQKKKKQKKQKMKKQKKTKKKKKKK 117
+ + +++++ ++K ++ K+ K+K K++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 25.9 bits (57), Expect = 4.7
Identities = 6/35 (17%), Positives = 23/35 (65%)
Query: 85 KKQTKKQKKQKKKKQKKQKMKKQKKTKKKKKKKQK 119
+ K+ +K+++ ++K ++ K K+ +K++ +++
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2,
protein complex, autoimmune disease, endonuclease,
hydrolase, metal-binding; 2.90A {Mus musculus} PDB:
3p5j_B 3puf_B 3p56_B
Length = 332
Score = 28.3 bits (62), Expect = 0.76
Identities = 10/66 (15%), Positives = 18/66 (27%)
Query: 59 HITSEIQADKYTIPIGRKENKKKKQKKKQTKKQKKQKKKKQKKQKMKKQKKTKKKKKKKQ 118
+ P +K + + + K K + +K K +K K
Sbjct: 252 FLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVD 311
Query: 119 KKQKKK 124
K K
Sbjct: 312 KSGMKS 317
Score = 27.5 bits (60), Expect = 1.4
Identities = 12/60 (20%), Positives = 19/60 (31%)
Query: 65 QADKYTIPIGRKENKKKKQKKKQTKKQKKQKKKKQKKQKMKKQKKTKKKKKKKQKKQKKK 124
+ K P N K+ K + + ++ + K K K K QK K
Sbjct: 251 KFLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKV 310
>1sxr_A Peptidoglycan recognition protein SA CG11709-PA; pattern
recognition receptor, innate immunity pathway, immune
system; 1.56A {Drosophila melanogaster} SCOP: d.118.1.1
Length = 183
Score = 27.9 bits (62), Expect = 0.76
Identities = 6/41 (14%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 19 VLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRH 59
+G+ + +P+ +Q L + L +I
Sbjct: 111 FIGNFVDKLPSDAALQAAKDLLACGVQQGELSEDYALIA-G 150
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_C 4a1c_C 4a1e_C
Length = 410
Score = 27.9 bits (61), Expect = 0.90
Identities = 14/77 (18%), Positives = 30/77 (38%)
Query: 47 LRLYPAAPIIGRHITSEIQADKYTIPIGRKENKKKKQKKKQTKKQKKQKKKKQKKQKMKK 106
+L PAA I+ +A K K N+K + K+ + K ++ + K
Sbjct: 331 FKLNPAAKIVKEQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAK 390
Query: 107 QKKTKKKKKKKQKKQKK 123
++ + ++ K+
Sbjct: 391 ARQEDADFIAQGQEIKE 407
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 27.5 bits (62), Expect = 0.93
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 6/33 (18%)
Query: 10 QEVYDEIVQVLGDDPETVP------TYDQIQEL 36
++V I + G P+ T + Q+L
Sbjct: 50 RQVASHINEETGRQPQWFILDLLTCTSENCQQL 82
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 27.9 bits (62), Expect = 0.94
Identities = 5/40 (12%), Positives = 28/40 (70%)
Query: 75 RKENKKKKQKKKQTKKQKKQKKKKQKKQKMKKQKKTKKKK 114
++EN+ ++KK++ +++ + + + +++++ +++ + K+
Sbjct: 392 KQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKEN 431
>1v3y_A Peptide deformylase; protein synthesis, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, hydrolase; 1.81A {Thermus thermophilus} SCOP:
d.167.1.1
Length = 192
Score = 27.5 bits (62), Expect = 1.0
Identities = 3/29 (10%), Positives = 14/29 (48%)
Query: 89 KKQKKQKKKKQKKQKMKKQKKTKKKKKKK 117
K++ + + + + +K+ + K+ +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 25.6 bits (57), Expect = 3.7
Identities = 3/29 (10%), Positives = 14/29 (48%)
Query: 92 KKQKKKKQKKQKMKKQKKTKKKKKKKQKK 120
K++ + + ++ + +K + K+ +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 25.2 bits (56), Expect = 5.3
Identities = 3/25 (12%), Positives = 12/25 (48%)
Query: 100 KKQKMKKQKKTKKKKKKKQKKQKKK 124
K++ + + + + +K+ + K
Sbjct: 163 KREAFLEANRAELVRFQKEARALLK 187
Score = 25.2 bits (56), Expect = 5.7
Identities = 3/29 (10%), Positives = 15/29 (51%)
Query: 81 KKQKKKQTKKQKKQKKKKQKKQKMKKQKK 109
K++ + + + + +K+ + +K+ +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase,
ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET:
ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Length = 773
Score = 27.7 bits (62), Expect = 1.0
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 77 ENKKKKQKKKQTKKQKKQKKKKQKKQKMKKQKKTKKKK 114
+ K ++ K+ + + K+ + K+K K KK
Sbjct: 735 DVKLSLERIKEKVDRLNELKQGKNKKKSKHSKKHHHHH 772
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_e
3o58_G 3o5h_G 3u5e_F 3u5i_F
Length = 244
Score = 27.1 bits (59), Expect = 1.5
Identities = 8/48 (16%), Positives = 24/48 (50%)
Query: 77 ENKKKKQKKKQTKKQKKQKKKKQKKQKMKKQKKTKKKKKKKQKKQKKK 124
E++ KK K +Q ++ ++ +K K+++ ++ +K+ +
Sbjct: 10 ESQLKKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYET 57
Score = 24.8 bits (53), Expect = 8.5
Identities = 5/48 (10%), Positives = 21/48 (43%)
Query: 75 RKENKKKKQKKKQTKKQKKQKKKKQKKQKMKKQKKTKKKKKKKQKKQK 122
K +K ++ + +K K+++ +++ +K+ + ++
Sbjct: 16 SKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNII 63
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 421
Score = 27.1 bits (59), Expect = 1.8
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 75 RKENKKKKQKKKQTKKQKKQKKKKQKKQKMKKQKKTKKKKKKKQKKQKKK 124
+ E K KK + KK KK K+ K+ + +K KK KK +K
Sbjct: 361 KSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEK 410
Score = 26.8 bits (58), Expect = 2.3
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 76 KENKKKKQKKKQTKKQKKQKKKKQKKQKMKKQKKTKKKKKKKQKKQKKK 124
K+ ++KK KK K+ K+ +K KK KK +KK ++KK
Sbjct: 370 KKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEKK 418
Score = 26.8 bits (58), Expect = 2.4
Identities = 14/81 (17%), Positives = 27/81 (33%)
Query: 44 KETLRLYPAAPIIGRHITSEIQADKYTIPIGRKENKKKKQKKKQTKKQKKQKKKKQKKQK 103
K L+ + + + + K K + K ++K K+ ++K
Sbjct: 316 KNPLKNLRIMLKLNPYAKTMRRNTILRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRK 375
Query: 104 MKKQKKTKKKKKKKQKKQKKK 124
K+ KK KK +K
Sbjct: 376 KGKKTVGVKKPKKPVVGKKAA 396
Score = 26.0 bits (56), Expect = 4.6
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 75 RKENKKKKQKKKQTKKQKKQKKKKQKKQKMKKQKKTKKKKKKKQKKQKKK 124
+E +K ++ K +K KK KK + K+ KK +K +KK
Sbjct: 362 SEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKK 411
Score = 25.6 bits (55), Expect = 5.3
Identities = 18/84 (21%), Positives = 34/84 (40%)
Query: 41 RVIKETLRLYPAAPIIGRHITSEIQADKYTIPIGRKENKKKKQKKKQTKKQKKQKKKKQK 100
+ ++ L+L P A + R+ + + K ++K +K ++KK +K
Sbjct: 320 KNLRIMLKLNPYAKTMRRNTILRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKK 379
Query: 101 KQKMKKQKKTKKKKKKKQKKQKKK 124
+KK KK KK K+
Sbjct: 380 TVGVKKPKKPVVGKKAAATKKPAA 403
>2cb3_A Peptidoglycan-recognition protein-LE; PGRP, tracheal cytotoxin,
innate immunity, immune system; HET: MLD; 2.40A
{Drosophila melanogaster} SCOP: d.118.1.1
Length = 175
Score = 26.7 bits (59), Expect = 2.1
Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 19 VLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRH 59
+G + +PT D + L E + +I H
Sbjct: 105 FIGCFMKELPTADALNMCRNLLARGVEDGHISTDYRLIC-H 144
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga
maritima} PDB: 2gaj_A*
Length = 633
Score = 26.8 bits (60), Expect = 2.1
Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 4/59 (6%)
Query: 63 EIQADK----YTIPIGRKENKKKKQKKKQTKKQKKQKKKKQKKQKMKKQKKTKKKKKKK 117
EI + I + + K++ + K+ Q ++ ++K KK
Sbjct: 182 EILRFVPKKYHRITVNFDGLTAEIDVKEKKFFDAETLKEIQSIDELVVEEKKVSVKKFA 240
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 3u5i_D 3izc_Q 3izs_Q
3o58_E 3o5h_E 3jyw_E 1s1i_E
Length = 297
Score = 26.6 bits (58), Expect = 2.5
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 75 RKENKKKKQKKKQTKKQKKQKKKKQKKQKM-KKQKKTKKKKKKKQKKQKK 123
R + K +KK TK+Q + KK ++ K+ K+++ + K ++
Sbjct: 248 RADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERAARVAAKIAALAGQQ 297
>3fd5_A Selenide, water dikinase 1; selenophosphate synthetase, SELD,
ATP-binding, nucleotide-binding, selenium, transferase;
HET: AP2; 1.90A {Homo sapiens} PDB: 3fd6_A*
Length = 394
Score = 26.4 bits (58), Expect = 2.5
Identities = 9/44 (20%), Positives = 13/44 (29%), Gaps = 4/44 (9%)
Query: 19 VLGDDPET----VPTYDQIQELHLLTRVIKETLRLYPAAPIIGR 58
+ G PET + + Q + A IIG
Sbjct: 315 MHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGI 358
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Length = 135
Score = 26.1 bits (57), Expect = 2.7
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 78 NKKKKQKKKQTKKQKKQKKKKQKKQKMKKQKKTKKKKKKK 117
++ +K +++Q+KQKK + KK ++ KK ++
Sbjct: 94 YGLAEKVEKASRQQRKQKKNRDKKIFGTGKRLAKKVARRN 133
>3lut_A Voltage-gated potassium channel subunit beta-2; voltage gating,
potassium channel, KV1.2, gating charges, no analysis,
ION transport; HET: NAP; 2.90A {Rattus norvegicus}
Length = 367
Score = 26.5 bits (59), Expect = 2.9
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVPTY 30
+ + PK+ + EI +LG+ P + Y
Sbjct: 337 IQVLPKLSSSIVHEIDSILGNKPYSKKDY 365
>2ew5_A Peptide deformylase; inhibitor, hydrolase; HET: Y12; 2.20A
{Helicobacter pylori} PDB: 2ew6_A* 2ew7_A
Length = 181
Score = 25.9 bits (58), Expect = 3.0
Identities = 6/27 (22%), Positives = 16/27 (59%)
Query: 96 KKKQKKQKMKKQKKTKKKKKKKQKKQK 122
K+K+ ++++K+ +K +K K +
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHHHHH 181
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation,
transferase; HET: SAH TYD; 1.40A {Micromonospora
chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A*
4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Length = 416
Score = 26.2 bits (58), Expect = 3.7
Identities = 3/58 (5%), Positives = 18/58 (31%), Gaps = 6/58 (10%)
Query: 73 IGRKENKKKKQKKKQTKKQKKQKKKKQKKQKMKKQKKTKKKKKK------KQKKQKKK 124
+ R+ ++ Q +++++ K + + + + + +
Sbjct: 264 LARQGSRTPSAAVAQLLAAEREQELSDMATLRAFAGNVVKIRDELTALLHRLRAEGRS 321
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP
cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas
putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Length = 338
Score = 26.0 bits (58), Expect = 3.8
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 9/40 (22%)
Query: 45 ETLRLY---------PAAPIIGRHITSEIQADKYTIPIGR 75
E RLY +H S + YT+P+ +
Sbjct: 173 EPKRLYNGPFDGHHDRPVTPWSKHPHSAVPDGYYTVPLDK 212
>1yck_A Peptidoglycan recognition protein; PGRP-S, innate immunity, pattern
recognition proteins, immune syste; 1.70A {Homo sapiens}
SCOP: d.118.1.1 PDB: 3mu9_A* 2r2k_A 2z9n_A* 2r90_A*
3c93_A* 3cg9_A* 3cor_A* 3cxa_A* 3c2x_A* 3ng4_A* 3nkw_A*
3nno_A* 3nw3_A* 3o4k_A* 3ogx_A* 3olk_A* 3qj1_A* 3qs0_A*
3qv4_A* 3rt4_A* ...
Length = 175
Score = 25.6 bits (56), Expect = 4.0
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 19 VLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRH 59
+G+ + VPT I+ L L + G H
Sbjct: 110 FMGNYMDRVPTPQAIRAAQGLLACGVAQGALRSNYVLKG-H 149
>3pn3_A Peptide deformylase 1B, chloroplastic; PDF, N-terminal excision
pathway, N induced-FIT, hydrolase-hydrolase inhibitor
complex; HET: PN3; 1.30A {Arabidopsis thaliana} PDB:
3m6p_A* 3o3j_A* 3pn2_A 3m6o_A* 3pn4_A* 3pn5_A 3m6q_A
3pn6_A 3m6r_A 3cpm_A
Length = 193
Score = 25.6 bits (57), Expect = 4.0
Identities = 5/30 (16%), Positives = 18/30 (60%)
Query: 88 TKKQKKQKKKKQKKQKMKKQKKTKKKKKKK 117
++ + +KK ++K + ++ + ++K+K
Sbjct: 156 REELEALEKKYEEKTGLPSPERVEARQKRK 185
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase,
multienzyme complex, oxidoreductase; HET: TDP; 2.0A
{Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2
PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Length = 324
Score = 25.9 bits (58), Expect = 4.3
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 7/31 (22%)
Query: 45 ETLRLYPAAPIIGRHITSEIQADKYTIPIGR 75
E L+LY R E+ +YTIPIG+
Sbjct: 171 EHLKLY-------RSFRQEVPEGEYTIPIGK 194
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase,
winged-helix domain, ATP hydrolysis, walker A, walker B,
sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga
maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A*
1in8_A* 1in7_A* 1j7k_A*
Length = 334
Score = 25.6 bits (57), Expect = 4.7
Identities = 8/20 (40%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
Query: 33 IQELHLLTRVIKETLRLYPA 52
I E+H L + ++E LY A
Sbjct: 108 IDEIHRLNKAVEEL--LYSA 125
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 25.8 bits (56), Expect = 4.7
Identities = 10/50 (20%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 77 ENKKKKQKKKQTKKQKKQKKKKQKK--QKMKKQKKTKKKKKKKQKKQKKK 124
+NK + + +K+ K+ ++ ++ M K+ + K++ K KK
Sbjct: 383 QNKAARLQISMCQKKAKEHNERDRRIYANMFKKFAEQDAKEEANKAMGKK 432
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide,
hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP:
a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Length = 324
Score = 25.6 bits (57), Expect = 4.8
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
Query: 33 IQELHLLTRVIKETLRLYPA 52
I E+H L+R +E LYPA
Sbjct: 96 IDEIHRLSRQAEEH--LYPA 113
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A
{Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Length = 522
Score = 25.8 bits (56), Expect = 5.3
Identities = 11/75 (14%), Positives = 25/75 (33%), Gaps = 5/75 (6%)
Query: 55 IIGRHITSEIQADKYT-----IPIGRKENKKKKQKKKQTKKQKKQKKKKQKKQKMKKQKK 109
+ I +Q+ +Y I RK+ + KK + + + + K + +
Sbjct: 73 LGEDRIELTLQSGRYVRVHDAIFRLRKQLAEALGKKYKIGIRGIEVESFIIKVPADHELR 132
Query: 110 TKKKKKKKQKKQKKK 124
K K + +
Sbjct: 133 MLKVPYIKSMENIEG 147
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable
holliday junction DNA helicase; HET: ADP; 2.69A
{Campylobacter jejuni subsp}
Length = 338
Score = 25.6 bits (57), Expect = 5.4
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
Query: 33 IQELHLLTRVIKETLRLYPA 52
I E+H L+ I+E LYPA
Sbjct: 112 IDEIHRLSPAIEEV--LYPA 129
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 25.2 bits (56), Expect = 5.5
Identities = 6/45 (13%), Positives = 23/45 (51%)
Query: 76 KENKKKKQKKKQTKKQKKQKKKKQKKQKMKKQKKTKKKKKKKQKK 120
K ++ +++ +++++ + +++++ K K KK +K
Sbjct: 217 KTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
>1taz_A Calcium/calmodulin-dependent 3',5'-cyclic nucleot phosphodiesterase
1B; PDE1B, hydrolase; HET: CME; 1.77A {Homo sapiens}
SCOP: a.211.1.2
Length = 365
Score = 25.6 bits (56), Expect = 5.8
Identities = 6/47 (12%), Positives = 16/47 (34%)
Query: 78 NKKKKQKKKQTKKQKKQKKKKQKKQKMKKQKKTKKKKKKKQKKQKKK 124
N+ Q ++ + + K ++ K+K K++
Sbjct: 315 NQPSFQWRQPSLDVEVGDPNPDVVSFRSTWVKRIQENKQKWKERAAS 361
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 25.5 bits (55), Expect = 5.9
Identities = 15/73 (20%), Positives = 33/73 (45%)
Query: 52 AAPIIGRHITSEIQADKYTIPIGRKENKKKKQKKKQTKKQKKQKKKKQKKQKMKKQKKTK 111
A I+ H + + + ++ + + KK++ ++ K K K K K KK
Sbjct: 451 AVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVV 510
Query: 112 KKKKKKQKKQKKK 124
+ KKK ++ +++
Sbjct: 511 ESKKKAVQRLEEQ 523
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo
sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Length = 323
Score = 25.4 bits (55), Expect = 6.2
Identities = 11/51 (21%), Positives = 20/51 (39%)
Query: 72 PIGRKENKKKKQKKKQTKKQKKQKKKKQKKQKMKKQKKTKKKKKKKQKKQK 122
P +E KQK + + KK+K + KK K ++++
Sbjct: 264 PPRSEEVAVLKQKLDRCHSAELALNVITKKRKGYEDDDYVSKKSKHEEEEW 314
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 25.1 bits (55), Expect = 7.2
Identities = 8/39 (20%), Positives = 19/39 (48%)
Query: 76 KENKKKKQKKKQTKKQKKQKKKKQKKQKMKKQKKTKKKK 114
K +++ K+ KKQ + KKK + + + + + +
Sbjct: 472 KPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQNME 510
Score = 25.1 bits (55), Expect = 9.2
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 79 KKKKQKKKQTKKQKKQKKKKQKKQKMKKQKKTKKKKKKK 117
K +++ +KKQKKQ + +KK + + + +
Sbjct: 472 KPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQNME 510
>3pe5_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati northeast structural genomics
consortium, NESG; 2.38A {Clostridium leptum}
Length = 403
Score = 25.3 bits (55), Expect = 7.4
Identities = 2/33 (6%), Positives = 11/33 (33%)
Query: 88 TKKQKKQKKKKQKKQKMKKQKKTKKKKKKKQKK 120
++ ++ + + + K + +K
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 24.9 bits (54), Expect = 8.9
Identities = 2/33 (6%), Positives = 13/33 (39%)
Query: 88 TKKQKKQKKKKQKKQKMKKQKKTKKKKKKKQKK 120
+ ++ ++ + + + + K+ +K
Sbjct: 3 SNRRYQEPQNRDISSRSNGKNPFKRSTGRKVSN 35
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase;
HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1
Length = 389
Score = 25.0 bits (55), Expect = 8.0
Identities = 1/18 (5%), Positives = 7/18 (38%)
Query: 6 PKIQQEVYDEIVQVLGDD 23
++ + +V ++
Sbjct: 305 WINMLDISYTLAEVTLEE 322
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR
family, hydrolase; 2.35A {Escherichia coli} SCOP:
b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Length = 644
Score = 25.2 bits (56), Expect = 8.1
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 12 VYDEIVQVLGDDPETVPTY----DQIQELHLLTRVIKE 45
VYD++ L + + P +Q++ L + + E
Sbjct: 312 VYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGE 349
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase,
rossmann fold, LEFT-handed-beta-helix, cell shape; HET:
COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB:
3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Length = 501
Score = 24.8 bits (55), Expect = 8.7
Identities = 9/72 (12%), Positives = 25/72 (34%), Gaps = 9/72 (12%)
Query: 53 API-IGRH--------ITSEIQADKYTIPIGRKENKKKKQKKKQTKKQKKQKKKKQKKQK 103
AP+ IG + ++ + G + N + ++K+ Q K+ +
Sbjct: 428 APVTIGDGAYTGAGTVVREDVPPGALAVSAGPQRNIENWVQRKRPGSPAAQASKRASEMA 487
Query: 104 MKKQKKTKKKKK 115
++ + +
Sbjct: 488 CQQPTQPPDADQ 499
>1rl4_A Formylmethionine deformylase; crystal engineering, drug design,
malaria, PDF, peptide DEFO plasmodium, hydrolase; HET:
BRR BL5; 2.18A {Plasmodium falciparum} SCOP: d.167.1.1
PDB: 1rqc_A 1jym_A
Length = 188
Score = 24.4 bits (54), Expect = 9.4
Identities = 4/27 (14%), Positives = 10/27 (37%)
Query: 96 KKKQKKQKMKKQKKTKKKKKKKQKKQK 122
KK+ + K+ + + K +
Sbjct: 160 DKKKVRPKLNELIRDYKATHSLEHHHH 186
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics,
NPPSFA, NAT project on protein structural and functional
analyses; 1.90A {Geobacillus kaustophilus}
Length = 308
Score = 24.8 bits (55), Expect = 9.5
Identities = 5/19 (26%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Query: 6 PKI-QQEVYDEIVQVLGDD 23
P I +YD ++ V ++
Sbjct: 229 PDILDTSIYDGVITVTTEE 247
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.308 0.126 0.331
Gapped
Lambda K H
0.267 0.0713 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,683,490
Number of extensions: 96400
Number of successful extensions: 3223
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2160
Number of HSP's successfully gapped: 924
Length of query: 124
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 42
Effective length of database: 4,412,271
Effective search space: 185315382
Effective search space used: 185315382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (23.5 bits)