RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7704
(124 letters)
>d1tqna_ a.104.1.1 (A:) Mammalian cytochrome P450 3a4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 472
Score = 42.0 bits (97), Expect = 5e-06
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 3 ALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRHITS 62
A HP +QQ++ +EI VL + PTYD + ++ L V+ ETLRL+P A + R
Sbjct: 295 ATHPDVQQKLQEEIDAVLPNKAP--PTYDTVLQMEYLDMVVNETLRLFPIAMRLERVCKK 352
Query: 63 EIQADKYTIPIG 74
+++ + IP G
Sbjct: 353 DVEINGMFIPKG 364
>d1ogya2 c.81.1.1 (A:12-681) Periplasmic nitrate reductase alpha
chain {Rhodobacter sphaeroides [TaxId: 1063]}
Length = 670
Score = 29.6 bits (65), Expect = 0.095
Identities = 12/46 (26%), Positives = 17/46 (36%)
Query: 5 HPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLY 50
K E Y + G D TY +++ LH +ET Y
Sbjct: 588 PQKGLFEEYAAFGRGHGHDLAPFDTYHEVRGLHWPVVEGEETRWRY 633
>d1mswd_ e.8.1.3 (D:) T7 RNA polymerase {Bacteriophage T7 [TaxId:
10760]}
Length = 882
Score = 28.6 bits (63), Expect = 0.24
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 6/68 (8%)
Query: 56 IGRHITSEIQADKYTIPIGRKENKKKKQKKKQTKKQKKQKKKKQKKQKMKKQKKTKKKKK 115
IGR I E + + ++ + K KK ++ K+ KK M+ + K
Sbjct: 140 IGRAIEDEARFGRI------RDLEAKHFKKNVEEQLNKRVGHVYKKAFMQVVEADMLSKG 193
Query: 116 KKQKKQKK 123
+
Sbjct: 194 LLGGEAWS 201
>d1ohta_ d.118.1.1 (A:) Peptidoglycan recognition protein-lb
(Cg14704) {Fruit fly (Drosophila melanogaster) [TaxId:
7227]}
Length = 174
Score = 25.5 bits (55), Expect = 1.5
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 17 VQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIG 57
+ ++GD +P + L + PA ++G
Sbjct: 100 IVLIGDWRTELPPKQMLDAAKNLIAFGVFKGYIDPAYKLLG 140
>d1jeta_ c.94.1.1 (A:) Oligo-peptide binding protein (OPPA)
{Salmonella typhimurium [TaxId: 90371]}
Length = 517
Score = 25.8 bits (55), Expect = 1.6
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 5/64 (7%)
Query: 6 PKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRHITSEIQ 65
+ E+Y + Q L D VP Y + R++K + Y + +
Sbjct: 459 DTQRSELYAKAEQQLDKDSAIVPVYYYVN-----ARLVKPWVGGYTGKDPLDNIYVKNLY 513
Query: 66 ADKY 69
K+
Sbjct: 514 IIKH 517
>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 25.6 bits (55), Expect = 1.7
Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 2/40 (5%)
Query: 4 LHPKIQQEVYDEIVQVLGDDPETVPTYDQIQEL--HLLTR 41
L E + + P Y +++L +L R
Sbjct: 240 LCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHR 279
>d1zlqa1 c.94.1.1 (A:3-501) Nickel-binding periplasmic protein NikA
{Escherichia coli [TaxId: 562]}
Length = 499
Score = 25.5 bits (54), Expect = 1.9
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 6 PKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRHITSEIQ 65
+Q +Y +I+ L D+ +P V K L P API +I+
Sbjct: 442 ETQRQALYRDILTRLHDEAVYLPISYISM-----MVVSKPELGNIPYAPIATEIPFEQIK 496
Query: 66 ADK 68
K
Sbjct: 497 PVK 499
>d2f2lx1 d.118.1.1 (X:335-499) Peptidoglycan-recognition protein-LC
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 165
Score = 24.7 bits (53), Expect = 3.3
Identities = 7/42 (16%), Positives = 14/42 (33%)
Query: 16 IVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIG 57
+ +G P Q++ LL + +L + G
Sbjct: 97 GISFIGTFTTRKPNERQLEACQLLLQEGVRLKKLTTNYRLYG 138
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 24.9 bits (54), Expect = 3.6
Identities = 8/28 (28%), Positives = 21/28 (75%)
Query: 75 RKENKKKKQKKKQTKKQKKQKKKKQKKQ 102
KEN+K+++ +++ ++ K K+K +K++
Sbjct: 304 VKENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 24.2 bits (52), Expect = 5.0
Identities = 7/31 (22%), Positives = 19/31 (61%)
Query: 86 KQTKKQKKQKKKKQKKQKMKKQKKTKKKKKK 116
Q K+ +++++ ++K + K K K +K++
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKER 331
>d1sk4a_ d.118.1.1 (A:) Peptidoglycan recognition protein I-alpha
{Human (Homo sapiens) [TaxId: 9606]}
Length = 163
Score = 24.3 bits (52), Expect = 4.9
Identities = 7/41 (17%), Positives = 14/41 (34%)
Query: 17 VQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIG 57
+ +G E P ++ L + L P ++G
Sbjct: 97 IAFIGYFVEKPPNAAALEAAQDLIQCAVVEGYLTPNYLLMG 137
>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 293
Score = 24.4 bits (52), Expect = 5.3
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 4 LHPKIQQEVYDEIVQVLGDDPETVPTYDQIQEL 36
L +E Y + + P YD +Q L
Sbjct: 240 LCAGFPEEFYKYMHYARNLAFDATPDYDYLQGL 272
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 24.3 bits (53), Expect = 5.4
Identities = 6/28 (21%), Positives = 19/28 (67%)
Query: 79 KKKKQKKKQTKKQKKQKKKKQKKQKMKK 106
+ +K++KKQ Q+K++ + ++++ +
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 23.5 bits (51), Expect = 9.6
Identities = 4/28 (14%), Positives = 20/28 (71%)
Query: 95 KKKKQKKQKMKKQKKTKKKKKKKQKKQK 122
+ +K++K+++ Q+K + + ++++ ++
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
>d1om4a_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 418
Score = 23.9 bits (52), Expect = 6.2
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 22/73 (30%)
Query: 16 IVQVLGDDPE--------------TVPTYDQIQELHL----LTRVIKETLRL----YPAA 53
++Q G+DPE P +D ++L L L V L + + A
Sbjct: 225 LLQANGNDPELFQIPPELVLEVPIRHPKFDWFKDLGLKWYGLPAVSNMLLEIGGLEFSAC 284
Query: 54 PIIGRHITSEIQA 66
P G ++ +EI
Sbjct: 285 PFSGWYMGTEIGV 297
>d1q2oa_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
{Cow (Bos taurus) [TaxId: 9913]}
Length = 416
Score = 23.9 bits (52), Expect = 6.5
Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 22/73 (30%)
Query: 16 IVQVLGDDPETV--------------PTYDQIQELHLLTRV--IKETLRL------YPAA 53
++Q + PE PT + L L + L + AA
Sbjct: 228 LLQAPDEAPELFVLPPELVLEVPLEHPTLEWFAALGLRWYALPAVSNMLLEIGGLEFSAA 287
Query: 54 PIIGRHITSEIQA 66
P G ++++EI
Sbjct: 288 PFSGWYMSTEIGT 300
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 23.5 bits (51), Expect = 8.7
Identities = 8/28 (28%), Positives = 19/28 (67%)
Query: 79 KKKKQKKKQTKKQKKQKKKKQKKQKMKK 106
K + + +KQ K++K K K++ ++ +K+
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKE 137
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.308 0.126 0.331
Gapped
Lambda K H
0.267 0.0567 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 420,746
Number of extensions: 20008
Number of successful extensions: 705
Number of sequences better than 10.0: 1
Number of HSP's gapped: 496
Number of HSP's successfully gapped: 234
Length of query: 124
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 49
Effective length of database: 1,377,846
Effective search space: 67514454
Effective search space used: 67514454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 47 (22.2 bits)