Query psy7709
Match_columns 336
No_of_seqs 161 out of 256
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 16:48:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7709.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7709hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gdk_B Autophagy protein 5; pr 100.0 1.5E-91 5E-96 663.0 23.3 270 46-336 1-273 (275)
2 3vqi_A ATG5; autophagy, E3-lik 100.0 3.3E-86 1.1E-90 626.4 17.8 257 47-333 2-274 (274)
3 2dyo_A Autophagy protein 5; ub 100.0 9.3E-84 3.2E-88 615.8 19.3 260 48-335 3-287 (297)
4 4gdk_B Autophagy protein 5; pr 99.5 2.4E-14 8.1E-19 135.3 4.5 61 1-62 1-61 (275)
5 2dyo_A Autophagy protein 5; ub 99.2 5.5E-12 1.9E-16 120.4 5.1 59 2-61 2-63 (297)
6 3vqi_A ATG5; autophagy, E3-lik 99.2 1.4E-11 4.7E-16 116.4 4.2 60 4-63 4-65 (274)
7 2r2q_A Gamma-aminobutyric acid 98.6 2E-07 6.9E-12 76.6 8.4 95 223-333 6-109 (110)
8 1eo6_A GATE-16, golgi-associat 98.3 1.9E-06 6.5E-11 71.5 8.0 95 224-334 8-111 (117)
9 3h9d_A ATG8, microtubule-assoc 95.9 0.028 9.5E-07 46.6 7.9 75 247-333 30-113 (119)
10 3rui_B Autophagy-related prote 95.8 0.032 1.1E-06 46.1 8.1 76 247-334 29-113 (118)
11 1wz3_A Autophagy 12B, ATG12B, 95.5 0.044 1.5E-06 43.7 7.6 78 246-333 11-90 (96)
12 3m95_A Autophagy related prote 95.2 0.06 2E-06 44.9 7.7 75 247-333 35-118 (125)
13 2zjd_A Microtubule-associated 94.7 0.08 2.8E-06 44.4 7.1 94 224-333 15-119 (130)
14 4gdk_A Ubiquitin-like protein 90.1 1.1 3.6E-05 35.2 7.4 77 247-333 4-85 (91)
15 3w1s_C Ubiquitin-like protein 85.2 2.1 7.2E-05 33.5 6.4 74 247-333 7-85 (91)
16 1c1y_B Proto-onkogene serine/t 25.8 46 0.0016 25.2 2.8 30 250-285 3-32 (77)
17 2kmm_A Guanosine-3',5'-BIS(dip 25.4 67 0.0023 22.5 3.6 51 251-315 3-53 (73)
18 1wxm_A A-RAF proto-oncogene se 23.7 48 0.0016 25.6 2.6 30 250-285 9-38 (86)
19 1yyp_B DNA polymerase, POL; pr 23.7 21 0.00072 21.6 0.4 9 249-257 1-9 (26)
20 2l05_A Serine/threonine-protei 22.4 56 0.0019 25.7 2.8 28 250-285 19-48 (95)
21 3ny5_A Serine/threonine-protei 21.9 58 0.002 25.7 2.8 56 250-318 15-77 (96)
No 1
>4gdk_B Autophagy protein 5; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_B
Probab=100.00 E-value=1.5e-91 Score=663.04 Aligned_cols=270 Identities=50% Similarity=0.954 Sum_probs=247.7
Q ss_pred hhhhHHHHHHhhCCceeEEEEEecCCcCCCCCCCceEEEecCccchhhhhhhhccccccccccccccccccccccccCCC
Q psy7709 46 ILLDREVLREVWDGKLPVCFTLLADQVSTVGEPDPSYLMVPRLSYFPLVLEKSYPFVGIGTTHVQHCFTSVIHHAIVNKH 125 (336)
Q Consensus 46 l~l~~ei~~~iW~G~Ipv~i~L~~~e~~~~~~p~p~~~~vPR~SYLpl~~p~i~~~~~~~~~~~~~~F~~~~~~~~~~~~ 125 (336)
|+.+.||+|++|+|+|||||+|+++|++. .+|.|||+++||+||||+++|+|+ +| |.+++. .+.
T Consensus 1 m~~d~ei~r~vW~G~Ipv~i~l~~~e~~~-~~~~p~~~~vPR~sYLpl~~p~i~-------~~----F~~~~~----~~~ 64 (275)
T 4gdk_B 1 MTDDKDVLRDVWFGRIPTCFTLYQDEITE-REAEPYYLLLPRVSYLTLVTDKVK-------KH----FQKVMR----QED 64 (275)
T ss_dssp --CHHHHHHHHHTCEEEEEEEECTTSCCS-SCCCCEEEEEETTSCHHHHCHHHH-------HH----HHTTSC----GGG
T ss_pred CCchHHHHHHHhCCCceEEEEECcccccc-CCCCcEEEEcchhhHHHHHHHHHH-------HH----HHhhcc----ccc
Confidence 46799999999999999999999999976 468899999999999999999999 99 988773 224
Q ss_pred CCccccccccccCCcccccccceeEeeeecCCCCCCceEEEEecCCCCCCccccCCcHHHHHHHHHHHhhhhhHHhccch
Q psy7709 126 PARNFFLSRTEALSQSSGRHYPIGLLYDLHVTDNQLPWNITVHFDKFPANEILHCPSREAVESHFMSCIKEADVLKHRSQ 205 (336)
Q Consensus 126 ~~~~Wfe~~~~~~g~PLkWh~PiGvLyDl~~~~~~lPW~Ltlhf~~~P~~~l~~~~~~~~i~~~fmn~lKEA~fi~~Gsk 205 (336)
.+++||| |||+|||||||||||||+++++..+||+|||||++||++.|++|++++++|++||||||||||+|||||
T Consensus 65 ~~~~Wfe----~eg~PLkWh~PiGvLyDl~~~~~~lPW~Ltvhf~~~P~~~l~~~~~~~~i~~~fmn~lKEAd~ir~~sk 140 (275)
T 4gdk_B 65 ISEIWFE----YEGTPLKWHYPIGLLFDLLASSSALPWNITVHFKSFPEKDLLHCPSKDAIEAHFMSCMKEADALKHKSQ 140 (275)
T ss_dssp CCCCEEE----ETTEECCTTSCHHHHHHHHHTTSCSSEEEEEECSSCCTTTCCCCCCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cCCccEe----ECCEEeccccccEEEEEecCCCCCCCeEEEEEcCCCCccccccCCcHHHHHHHHHHHHHHHHHHhcCCH
Confidence 5789999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccHHHHHHHHHHhHhCChHhHHHHHhhhCCCC-CCCCccceeEEEEeC--CCCceecccccccCCCCcccHHHHHH
Q psy7709 206 IVSNMQKKEHNQLWLGLQNDKFDQFWVINKKLMEPG-EGGGFKHIPFRCYQG--DLPFSQCLVKPITNEGNPKTLQNLFE 282 (336)
Q Consensus 206 ~im~ls~~d~~~LW~si~~~d~~~f~~in~kL~~~~-~~~~~r~IPiRIy~~--~~~~iQ~~v~p~~~~g~~~TL~d~L~ 282 (336)
+||+||++||++||+||++|||++||+||+||+++. +++.+|+||||||++ +.+++|++|+|.+++|+++||||+|+
T Consensus 141 ~im~lsk~d~~~LW~sv~~~d~~~F~~in~kL~~~~~~~~~~r~IPvRiY~~~~~~~~iQ~~v~p~~~~g~~~TLg~~L~ 220 (275)
T 4gdk_B 141 VINEMQKKDHKQLWMGLQNDRFDQFWAINRKLMEYPAEENGFRYIPFRIYQTTTERPFIQKLFRPVAADGQLHTLGDLLK 220 (275)
T ss_dssp TTTSSCHHHHHHHHHHHHTTCHHHHHHHHTGGGCCCTTSSSCSSCCEEEECTTSSSSEECCCCCSBCTTSCBCBHHHHHH
T ss_pred HhhhcCHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCCccCccccceEEEEecCCCCCccccCcCCcCCCCCcccHHHHHH
Confidence 999999999999999999999999999999999853 456899999999987 46899999999999999999999999
Q ss_pred HhcCCCCccccccCCeeeEEEeeecCCCCCcHHHHHhhCCCCCceEEEEEEecC
Q psy7709 283 EVYPKISIDKCKLNGILVILVHGIAIPLDTPLQWMSEHLSYPDNFLHIVVNVNS 336 (336)
Q Consensus 283 ~~lP~lf~~~~~~~~~~~viihGI~vpld~pL~~L~~~l~~~DgFLhIvv~~~~ 336 (336)
+++|++|+++ +++..+++++|||++|+|+||+||+++|+|+||||||||+..+
T Consensus 221 ~~lP~lf~~~-~~~~~~~viihGI~~pl~~pl~~l~~~l~y~DgFLhI~v~~~~ 273 (275)
T 4gdk_B 221 EVCPSAIDPE-DGEKKNQVMIHGIEPMLETPLQWLSEHLSYPDNFLHISIIPQP 273 (275)
T ss_dssp HHCGGGCC-------CEEEEBTTBCCCTTSBHHHHHHHSCCTTSCEEEEEEECC
T ss_pred HhcccccCCC-cccccceEEEeCCcCCCCCCHHHHHHhccCCCceEEEEEEeCC
Confidence 9999999875 4556899999999999999999999999999999999998653
No 2
>3vqi_A ATG5; autophagy, E3-like, ubiquitin-fold, PRE-autoph structure, protein turnover, protein transport; HET: EPE; 2.50A {Kluyveromyces marxianus}
Probab=100.00 E-value=3.3e-86 Score=626.41 Aligned_cols=257 Identities=16% Similarity=0.304 Sum_probs=228.8
Q ss_pred hhhHHHHHHhhCCceeEEEEEecCCcCCC--CCCCceEEEecCccchhhhhhhhccccccccccccccccccccccccCC
Q psy7709 47 LLDREVLREVWDGKLPVCFTLLADQVSTV--GEPDPSYLMVPRLSYFPLVLEKSYPFVGIGTTHVQHCFTSVIHHAIVNK 124 (336)
Q Consensus 47 ~l~~ei~~~iW~G~Ipv~i~L~~~e~~~~--~~p~p~~~~vPR~SYLpl~~p~i~~~~~~~~~~~~~~F~~~~~~~~~~~ 124 (336)
|.+.|++|++|+|+|||||+|+++|+++. .+|+|||+++||+||||+++|+|+ +| |.+++..++ .+
T Consensus 2 ~~~~ei~~~vW~G~Ipv~i~l~~~e~~~~~~~~~~p~~~~vPR~SYLpl~~p~i~-------~~----F~~~~~~~~-~~ 69 (274)
T 3vqi_A 2 PHMEELRERVWNGTINVEVVVSDAIVVPNTTLADKSCHIVMLRDAYLGFYLPTVV-------RK----LADTIKVPY-ES 69 (274)
T ss_dssp --CCHHHHHHHTCEEEEEEEECTTTBCSSCCTGGGEEEEEEETTSCHHHHHHHHH-------HH----HGGGBCSCC-SC
T ss_pred CcHHHHHHHHhCCCceEEEEEChHHhcccCCCCCCcEEEEcchHhHHHHHHHHHH-------HH----HHhhccccc-cc
Confidence 45789999999999999999999999764 468999999999999999999999 99 988874221 12
Q ss_pred CCCccccccccccCCcccccccceeEeeeecCCCC-----------CCceEEEEecCC-CCCCcccc-CCcHHHHHHHHH
Q psy7709 125 HPARNFFLSRTEALSQSSGRHYPIGLLYDLHVTDN-----------QLPWNITVHFDK-FPANEILH-CPSREAVESHFM 191 (336)
Q Consensus 125 ~~~~~Wfe~~~~~~g~PLkWh~PiGvLyDl~~~~~-----------~lPW~Ltlhf~~-~P~~~l~~-~~~~~~i~~~fm 191 (336)
..+++||| |||+|||||||||||||++++.. .+||+|||||++ ||++ +++ |++++++|++||
T Consensus 70 ~~~~~WFe----~eg~PLkWh~PiGvLyDl~~~~~~~~~~~~~~~~~lpW~Ltvh~~~~~P~~-li~~~~~~~~i~~~fm 144 (274)
T 3vqi_A 70 DYRNWWFE----YNGEGVPWEYPCGVLFDLLNKKRKKQGNELDDTSLQMWELQLCHGDKYPRG-ILPLVDGHSQIKDYWR 144 (274)
T ss_dssp SSTTEEEE----ETTEECCTTSCHHHHHHHHCC--------------CEEEEEEEECSSCCTT-CCCCCSHHHHHHHHHH
T ss_pred ccCcccEE----ECCEeccccccceEEEEeccCCCcccccccccCCCCCEEEEEEeCCCCCcc-ccccCCcHHHHHHHHH
Confidence 36789999 99999999999999999998654 789999999998 9999 665 799999999999
Q ss_pred HHhhhhhHHhccc-hhhhcccHHHHHHHHHHhHhCChHhHHHHHhhhCCCCCCCCccceeEEEEeCCCCceecccccccC
Q psy7709 192 SCIKEADVLKHRS-QIVSNMQKKEHNQLWLGLQNDKFDQFWVINKKLMEPGEGGGFKHIPFRCYQGDLPFSQCLVKPITN 270 (336)
Q Consensus 192 n~lKEA~fi~~Gs-k~im~ls~~d~~~LW~si~~~d~~~f~~in~kL~~~~~~~~~r~IPiRIy~~~~~~iQ~~v~p~~~ 270 (336)
||||||||||||| |+||+||++|+++||+||++|||++||+||+||+++. ++|+||||||+++.+++|.+|+|.+
T Consensus 145 n~lKEAdfir~Gsak~im~lsk~d~~~LW~sv~~~~~~~F~~i~~kL~~~~---~~r~IPiRIy~~~~~~iQ~~i~~~~- 220 (274)
T 3vqi_A 145 HQWKQACFILNGSAKRIMSLSIPDFENFWVSILSRNRSDFMAVRSKLFSMN---KAKSLPVRVWTSNYAVLQPTVPVTD- 220 (274)
T ss_dssp HHHHHHHHHHHSBSCTTTTSCHHHHHHHHHHHHHTCHHHHHHHHHTTCCGG---GCSBCCEEEECTTSCEECCCCBCC--
T ss_pred HHHHHHHHHHhCChHHhhccCHHHHHHHHHHHHHhcHHHHHHHHHHhcCCC---cccceeEEEEcCCCCeEecccCCCC-
Confidence 9999999999998 9999999999999999999999999999999999432 6899999999999999999999864
Q ss_pred CCCcccHHHHHHHhcCCCCccccccCCeeeEEEeeecCCCCCcHHHHHhhCCCCCceEEEEEE
Q psy7709 271 EGNPKTLQNLFEEVYPKISIDKCKLNGILVILVHGIAIPLDTPLQWMSEHLSYPDNFLHIVVN 333 (336)
Q Consensus 271 ~g~~~TL~d~L~~~lP~lf~~~~~~~~~~~viihGI~vpld~pL~~L~~~l~~~DgFLhIvv~ 333 (336)
+++||||+|++++|++| ..+++++|||++|+++||+|||++|+|+||||||||+
T Consensus 221 --~~~TLg~~L~~~lp~l~-------~~~~~iihGi~vp~~~pl~~l~~~~~y~DgFLhivi~ 274 (274)
T 3vqi_A 221 --KELSVAELLDSIKLSSD-------GVKSVIIQGIDVSIEDNIFELYDIFASIDGFLYLVTK 274 (274)
T ss_dssp ----CBHHHHHHTTTCCC---------CCEEEETTEEEETTSBHHHHHHHHCCTTSCEEEECC
T ss_pred --ccccHHHHHHHhccccc-------cceEEEEeCccCCCCCcHHHHHHHccCCCceEEEEeC
Confidence 88999999999999887 4789999999999999999999999999999999873
No 3
>2dyo_A Autophagy protein 5; ubiquitin-fold, herix-bundle, protein turnover/protein turnover complex; 1.97A {Saccharomyces cerevisiae} PDB: 2dym_A
Probab=100.00 E-value=9.3e-84 Score=615.76 Aligned_cols=260 Identities=18% Similarity=0.254 Sum_probs=226.5
Q ss_pred hhHHHHHHhhCCceeEEEEEecCCcCCCCCCCc---eEEEecCccchhhhhhhhccccccccccccccccccccccccCC
Q psy7709 48 LDREVLREVWDGKLPVCFTLLADQVSTVGEPDP---SYLMVPRLSYFPLVLEKSYPFVGIGTTHVQHCFTSVIHHAIVNK 124 (336)
Q Consensus 48 l~~ei~~~iW~G~Ipv~i~L~~~e~~~~~~p~p---~~~~vPR~SYLpl~~p~i~~~~~~~~~~~~~~F~~~~~~~~~~~ 124 (336)
-+.+|+|++|+|+|||+|+|++++++. ++|+| ||+++||+||||+++|+|+ +| |.+++..+....
T Consensus 3 ~~~~i~r~vW~G~IPv~i~L~~~~~~~-~~p~p~~~~~~~vPR~SYLpl~~p~v~-------~~----F~~~l~~~~~~~ 70 (297)
T 2dyo_A 3 HMNDIKQLLWNGELNVLVSIDPSFLMK-GSPREIAVLRIRVPRETYLVNYMPLIW-------NK----IKSFLSFDPLTD 70 (297)
T ss_dssp CHHHHHHHHHTCEEEEEEEECGGGBCT-TCCGGGGEEEEEEESSSCGGGGHHHHH-------HH----HGGGBSSCC---
T ss_pred cHHHHHHHHHCCCceEEEEECcccccC-CCCCCcceEEEEcchHhHHHHHHHHHH-------HH----HHhhcccccccc
Confidence 378999999999999999999776654 68889 9999999999999999999 99 988763211111
Q ss_pred CCCccccccccccCCcccccccceeEeeeecCCC--------------CCCceEEEEecCCCCCCccccC-CcHHHHHHH
Q psy7709 125 HPARNFFLSRTEALSQSSGRHYPIGLLYDLHVTD--------------NQLPWNITVHFDKFPANEILHC-PSREAVESH 189 (336)
Q Consensus 125 ~~~~~Wfe~~~~~~g~PLkWh~PiGvLyDl~~~~--------------~~lPW~Ltlhf~~~P~~~l~~~-~~~~~i~~~ 189 (336)
....+||| |||+|||||||||||||++++. ..+||+|||||++||++.+++| ++++++|++
T Consensus 71 ~~~~~WFe----~eg~PLkWh~PiGvLyDl~~~~~p~~~~~~~~~~~~~~lPW~Ltvhf~~~P~~~li~~~~~~~~i~~~ 146 (297)
T 2dyo_A 71 SEKYFWFE----HNKTPIPWNYPVGVLFDCLAGKSATFTTSFENQVKDVLTFLRIHLVMGDSLPPTIIPIASSKTQAEKF 146 (297)
T ss_dssp -CCEEEEE----ETTEEECTTSCHHHHHHHHHGGGC---------CCCCCCEEEEEEEEESSCCTTCCCCCSCTTHHHHH
T ss_pred ccCcccee----ECCEEccccccceEEEEeccCCCcccccccccccccCCCCEEEEEEeCCCCccceeecCChHHHHHHH
Confidence 23458999 9999999999999999999852 2379999999999999999999 899999999
Q ss_pred HHHHhhhhhHHhccc-hhhhcccHHHHHHHHHHhHhCChHhHHHHHhhhCCCCCCCCccceeEEEEeCCC----Cceecc
Q psy7709 190 FMSCIKEADVLKHRS-QIVSNMQKKEHNQLWLGLQNDKFDQFWVINKKLMEPGEGGGFKHIPFRCYQGDL----PFSQCL 264 (336)
Q Consensus 190 fmn~lKEA~fi~~Gs-k~im~ls~~d~~~LW~si~~~d~~~f~~in~kL~~~~~~~~~r~IPiRIy~~~~----~~iQ~~ 264 (336)
||||||||||||||+ |+||+||++|+++||+||++|||++||+||+||++.+ +|+||||||+++. +++|+.
T Consensus 147 f~n~lKEAdfir~G~~k~im~Lsk~d~~~LW~~v~~~d~~~F~~i~~kL~~~~----~r~IPvRIy~~~~~~~~~~iqp~ 222 (297)
T 2dyo_A 147 WFHQWKQVCFILNGSSKAIMSLSVNEARKFWGSVITRNFQDFIEISNKISSSR----PRHIPLIIQTSRTSGTFRISQPT 222 (297)
T ss_dssp HHHHHHHHHHHHHSSSHHHHTSCHHHHHHHHHHHHHTCHHHHHHHHHHHCCSC----CSBCCEEEECCSSSSSCCEECCC
T ss_pred HHHHHHHHHHHHhCCcHHhhhcCHHHHHHHHHHHHhhhHHHHHHHHHhccCCC----cceeeEEEEecCCCCceeeeecc
Confidence 999999999999998 9999999999999999999999999999999999863 6999999999965 588866
Q ss_pred cccccCCCCcccHHHHH--HHhcCCCCccccccCCeeeEEEeeecCCCCCcHHHHHhhCCCCCceEEEEEEec
Q psy7709 265 VKPITNEGNPKTLQNLF--EEVYPKISIDKCKLNGILVILVHGIAIPLDTPLQWMSEHLSYPDNFLHIVVNVN 335 (336)
Q Consensus 265 v~p~~~~g~~~TL~d~L--~~~lP~lf~~~~~~~~~~~viihGI~vpld~pL~~L~~~l~~~DgFLhIvv~~~ 335 (336)
+++ +++.+||||+| +.++|++|+++ ..+|++|||++|+|+||+||+++|+|+||||||||++.
T Consensus 223 ~~~---~~~~~TLgd~L~~~~~lp~lf~~~-----~~~viihGI~vpl~~pl~wl~~~l~~pDgFLhIvv~~~ 287 (297)
T 2dyo_A 223 ISM---TGVNPTLKDIEGDILDVKEGINGN-----DVMVICQGIEIPWHMLLYDLYSKLRSFDGFLYITLVPI 287 (297)
T ss_dssp CBC---TTCCCBTGGGHHHHSCTTTC---------CEEEEETTEEECTTCBHHHHHHHHCCTTSCEEEEEEEC
T ss_pred cCC---CCCCcCHHHHHhhhhhccccCCCC-----CCeEEEeCccCCCCCcHHHHHHHhcCCCcEEEEEEEEc
Confidence 543 33445999999 99999999865 24899999999999999999999999999999999874
No 4
>4gdk_B Autophagy protein 5; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_B
Probab=99.46 E-value=2.4e-14 Score=135.33 Aligned_cols=61 Identities=34% Similarity=0.828 Sum_probs=53.5
Q ss_pred CcchHHHHHhhcCCCcceEEEeecCcccccCCCCCeeeeecchhhhhhhHHHHHHhhCCcee
Q psy7709 1 MASDREVLREVWDGKLPVCFTLLADQVSTVGEPDPSYLMVPRYVWILLDREVLREVWDGKLP 62 (336)
Q Consensus 1 ~~~~~e~~~~~w~g~ip~~~~l~~~e~~~~~~~~p~~~~~pr~~yl~l~~ei~~~iW~G~Ip 62 (336)
||+|+||+|+||+|+|||||+|+++|+++ .+|+|||+|+||+||||+..+..+..+...++
T Consensus 1 m~~d~ei~r~vW~G~Ipv~i~l~~~e~~~-~~~~p~~~~vPR~sYLpl~~p~i~~~F~~~~~ 61 (275)
T 4gdk_B 1 MTDDKDVLRDVWFGRIPTCFTLYQDEITE-REAEPYYLLLPRVSYLTLVTDKVKKHFQKVMR 61 (275)
T ss_dssp --CHHHHHHHHHTCEEEEEEEECTTSCCS-SCCCCEEEEEETTSCHHHHCHHHHHHHHTTSC
T ss_pred CCchHHHHHHHhCCCceEEEEECcccccc-CCCCcEEEEcchhhHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999955 57899999999999999988888888876543
No 5
>2dyo_A Autophagy protein 5; ubiquitin-fold, herix-bundle, protein turnover/protein turnover complex; 1.97A {Saccharomyces cerevisiae} PDB: 2dym_A
Probab=99.22 E-value=5.5e-12 Score=120.37 Aligned_cols=59 Identities=19% Similarity=0.326 Sum_probs=52.8
Q ss_pred cchHHHHHhhcCCCcceEEEeecCcccccCCCCC---eeeeecchhhhhhhHHHHHHhhCCce
Q psy7709 2 ASDREVLREVWDGKLPVCFTLLADQVSTVGEPDP---SYLMVPRYVWILLDREVLREVWDGKL 61 (336)
Q Consensus 2 ~~~~e~~~~~w~g~ip~~~~l~~~e~~~~~~~~p---~~~~~pr~~yl~l~~ei~~~iW~G~I 61 (336)
|.|+|++|+||+|+||+||+|+++|+ +.++|+| ||+|+||+||||+..+..+..+...+
T Consensus 2 ~~~~~i~r~vW~G~IPv~i~L~~~~~-~~~~p~p~~~~~~~vPR~SYLpl~~p~v~~~F~~~l 63 (297)
T 2dyo_A 2 AHMNDIKQLLWNGELNVLVSIDPSFL-MKGSPREIAVLRIRVPRETYLVNYMPLIWNKIKSFL 63 (297)
T ss_dssp -CHHHHHHHHHTCEEEEEEEECGGGB-CTTCCGGGGEEEEEEESSSCGGGGHHHHHHHHGGGB
T ss_pred ccHHHHHHHHHCCCceEEEEECcccc-cCCCCCCcceEEEEcchHhHHHHHHHHHHHHHHhhc
Confidence 57999999999999999999997776 5578999 99999999999999998899988765
No 6
>3vqi_A ATG5; autophagy, E3-like, ubiquitin-fold, PRE-autoph structure, protein turnover, protein transport; HET: EPE; 2.50A {Kluyveromyces marxianus}
Probab=99.15 E-value=1.4e-11 Score=116.45 Aligned_cols=60 Identities=13% Similarity=0.166 Sum_probs=53.5
Q ss_pred hHHHHHhhcCCCcceEEEeecCccccc--CCCCCeeeeecchhhhhhhHHHHHHhhCCceeE
Q psy7709 4 DREVLREVWDGKLPVCFTLLADQVSTV--GEPDPSYLMVPRYVWILLDREVLREVWDGKLPV 63 (336)
Q Consensus 4 ~~e~~~~~w~g~ip~~~~l~~~e~~~~--~~~~p~~~~~pr~~yl~l~~ei~~~iW~G~Ipv 63 (336)
-.|++|+||+|+|||||+|+++|++.. ++|+|||+|+||+||||+..+..+..+...++.
T Consensus 4 ~~ei~~~vW~G~Ipv~i~l~~~e~~~~~~~~~~p~~~~vPR~SYLpl~~p~i~~~F~~~~~~ 65 (274)
T 3vqi_A 4 MEELRERVWNGTINVEVVVSDAIVVPNTTLADKSCHIVMLRDAYLGFYLPTVVRKLADTIKV 65 (274)
T ss_dssp CCHHHHHHHTCEEEEEEEECTTTBCSSCCTGGGEEEEEEETTSCHHHHHHHHHHHHGGGBCS
T ss_pred HHHHHHHHhCCCceEEEEEChHHhcccCCCCCCcEEEEcchHhHHHHHHHHHHHHHHhhccc
Confidence 469999999999999999999999543 479999999999999999999999999887663
No 7
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=98.55 E-value=2e-07 Score=76.62 Aligned_cols=95 Identities=15% Similarity=0.203 Sum_probs=73.0
Q ss_pred HhCChHhHHHHHhhhCCCCCCCCccceeEEEEeCC---CCceec---ccccccCCCCcccHHHHH---HHhcCCCCcccc
Q psy7709 223 QNDKFDQFWVINKKLMEPGEGGGFKHIPFRCYQGD---LPFSQC---LVKPITNEGNPKTLQNLF---EEVYPKISIDKC 293 (336)
Q Consensus 223 ~~~d~~~f~~in~kL~~~~~~~~~r~IPiRIy~~~---~~~iQ~---~v~p~~~~g~~~TL~d~L---~~~lP~lf~~~~ 293 (336)
..|.|++....+.+|....+ .+|||++...+ .+.++. +|+- ..|+++++ +..+ .+.+++
T Consensus 6 ~~~~~e~R~~e~~~ir~k~p----~~IPVive~~~~~~~p~l~k~KflVp~------~~tv~~~~~~iRk~l-~l~~~~- 73 (110)
T 2r2q_A 6 EDHPFEYRKKEGEKIRKKYP----DRVPVIVEKAPKARVPDLDKRKYLVPS------DLTVGQFYFLIRKRI-HLRPED- 73 (110)
T ss_dssp HHSCHHHHHHHHHHHHHHCT----TEEEEEEEECTTCCSCCCSCCEEEEET------TCBHHHHHHHHHHHT-TCCTTS-
T ss_pred ccCCHHHHHHHHHHHHHhCC----CceEEEEEecCCCCCCccceeEEEeCC------CCcHHHHHHHHHHHh-cCCCCC-
Confidence 46889999999999987544 68999999874 366655 4542 35888876 5555 343322
Q ss_pred ccCCeeeEEEeeecCCCCCcHHHHHhhCCCCCceEEEEEE
Q psy7709 294 KLNGILVILVHGIAIPLDTPLQWMSEHLSYPDNFLHIVVN 333 (336)
Q Consensus 294 ~~~~~~~viihGI~vpld~pL~~L~~~l~~~DgFLhIvv~ 333 (336)
...++++|+.+|+++.+.+||++++..||||||+..
T Consensus 74 ----alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys 109 (110)
T 2r2q_A 74 ----ALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYS 109 (110)
T ss_dssp ----CCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred ----cEEEEECCEecCccChHHHHHHHcCCCCCEEEEEEe
Confidence 346899999999999999999999999999999753
No 8
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=98.29 E-value=1.9e-06 Score=71.54 Aligned_cols=95 Identities=12% Similarity=0.123 Sum_probs=69.2
Q ss_pred hCChHhHHHHHhhhCCCCCCCCccceeEEEEeCC---CCceec---ccccccCCCCcccHHHHH---HHhcCCCCccccc
Q psy7709 224 NDKFDQFWVINKKLMEPGEGGGFKHIPFRCYQGD---LPFSQC---LVKPITNEGNPKTLQNLF---EEVYPKISIDKCK 294 (336)
Q Consensus 224 ~~d~~~f~~in~kL~~~~~~~~~r~IPiRIy~~~---~~~iQ~---~v~p~~~~g~~~TL~d~L---~~~lP~lf~~~~~ 294 (336)
.|.|++=...+.+|....+ .+|||+|.... .+.++. +|+. ..|+++++ +..+ .+.++
T Consensus 8 ~~~~e~R~~e~~~ir~kyP----~~IPVIve~~~~s~~p~l~k~KflVp~------~~tv~~f~~~iRk~l-~l~~~--- 73 (117)
T 1eo6_A 8 DHSLEHRCVESAKIRAKYP----DRVPVIVEKVSGSQIVDIDKRKYLVPS------DITVAQFMWIIRKRI-QLPSE--- 73 (117)
T ss_dssp HSCHHHHHHHHHHHHHHCT----TEEEEEEEECTTCSSCCCSCCEEEEET------TSBHHHHHHHHHHHH-TCCTT---
T ss_pred cCCHHHHHHHHHHHHHHCC----CeEEEEEEecCCCCCCcccceEEEcCC------CCCHHHHHHhhHHhh-cCCCC---
Confidence 4666666666777765433 68999999763 366665 4542 35788776 5555 34332
Q ss_pred cCCeeeEEEeeecCCCCCcHHHHHhhCCCCCceEEEEEEe
Q psy7709 295 LNGILVILVHGIAIPLDTPLQWMSEHLSYPDNFLHIVVNV 334 (336)
Q Consensus 295 ~~~~~~viihGI~vpld~pL~~L~~~l~~~DgFLhIvv~~ 334 (336)
....++|+|+.+|.++.+.+||++++..||||||....
T Consensus 74 --~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys~ 111 (117)
T 1eo6_A 74 --KAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSG 111 (117)
T ss_dssp --SCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEEC
T ss_pred --CcEEEEECCEecCccchHHHHHHHhCCCCCEEEEEEeC
Confidence 23468999999999999999999999999999998753
No 9
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=95.86 E-value=0.028 Score=46.55 Aligned_cols=75 Identities=13% Similarity=0.213 Sum_probs=52.6
Q ss_pred cceeEEEEeCC---CCceec---ccccccCCCCcccHHHHH---HHhcCCCCccccccCCeeeEEEeeecCCCCCcHHHH
Q psy7709 247 KHIPFRCYQGD---LPFSQC---LVKPITNEGNPKTLQNLF---EEVYPKISIDKCKLNGILVILVHGIAIPLDTPLQWM 317 (336)
Q Consensus 247 r~IPiRIy~~~---~~~iQ~---~v~p~~~~g~~~TL~d~L---~~~lP~lf~~~~~~~~~~~viihGI~vpld~pL~~L 317 (336)
.+|||.+-... .|.++. +|+ ...|+++++ +..+- +-+ .....+.|++..++.++.+..|
T Consensus 30 ~rIPVIvEr~~~~~~P~Ldk~KflVp------~~~tv~qf~~~iRkrl~-l~~-----~~alFl~Vn~~~p~~~~~m~~l 97 (119)
T 3h9d_A 30 DRLPIICEKVYNSDIGELDRCKFLVP------SDLTVGQFVSVLRKRVQ-LEA-----ESALFVYTNDTVLPSSAQMADI 97 (119)
T ss_dssp TEEEEEEEECTTSSCCCCSSCEEEEE------TTCBHHHHHHHHHHHHT-CCT-----TSCCEEEETTEECCTTSBHHHH
T ss_pred CeEEEEEEecCCCCCCccCcceEEcC------CCCCHHHHHHHHHHHhC-CCc-----cceEEEEECCcCCCccchHHHH
Confidence 47999998763 244443 233 235777765 44441 211 2345788899988999999999
Q ss_pred HhhCCCCCceEEEEEE
Q psy7709 318 SEHLSYPDNFLHIVVN 333 (336)
Q Consensus 318 ~~~l~~~DgFLhIvv~ 333 (336)
|++++.-||||||...
T Consensus 98 Y~~~kd~DGfLyv~Ys 113 (119)
T 3h9d_A 98 YSKYKDEDGFLYMKYS 113 (119)
T ss_dssp HHHHCCTTSCEEEEEE
T ss_pred HHHcCCCCCeEEEEEe
Confidence 9999999999999765
No 10
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=95.82 E-value=0.032 Score=46.11 Aligned_cols=76 Identities=17% Similarity=0.251 Sum_probs=52.6
Q ss_pred cceeEEEEeCC---CCceec---ccccccCCCCcccHHHHH---HHhcCCCCccccccCCeeeEEEeeecCCCCCcHHHH
Q psy7709 247 KHIPFRCYQGD---LPFSQC---LVKPITNEGNPKTLQNLF---EEVYPKISIDKCKLNGILVILVHGIAIPLDTPLQWM 317 (336)
Q Consensus 247 r~IPiRIy~~~---~~~iQ~---~v~p~~~~g~~~TL~d~L---~~~lP~lf~~~~~~~~~~~viihGI~vpld~pL~~L 317 (336)
.+|||.+-... .|.++. +|+ ...|+++++ +..+- +-+ .....+.|++..++.++.+..|
T Consensus 29 ~riPVIvE~~~~~~~P~ldk~KflVp------~~~tv~qf~~~iRkrl~-l~~-----~~alFl~Vn~~~p~~~~~m~~l 96 (118)
T 3rui_B 29 NRIPVICEKAEKSDIPEIDKRKYLVP------ADLTVGQFVYVIRKRIM-LPP-----EKAIFIFVNDTLPPTAALMSAI 96 (118)
T ss_dssp SEEEEEEEECTTCCSCCCSCCEEEEE------TTSBHHHHHHHHHHHTT-CCT-----TCCEEEEBTTBCCCTTSBHHHH
T ss_pred CceEEEEEeCCCCCCCccccceEEcC------CCCCHHHHHHHHHHHhC-cCC-----CccEEEEECCccCCccchHHHH
Confidence 47999998763 234433 233 235777664 45542 211 1245677888888999999999
Q ss_pred HhhCCCCCceEEEEEEe
Q psy7709 318 SEHLSYPDNFLHIVVNV 334 (336)
Q Consensus 318 ~~~l~~~DgFLhIvv~~ 334 (336)
|++++.-||||||....
T Consensus 97 Y~~~kdeDGfLyv~Ys~ 113 (118)
T 3rui_B 97 YQEHKDKDGFLYVTYSG 113 (118)
T ss_dssp HHHHCCTTSCEEEEEEE
T ss_pred HHHcCCCCCeEEEEEec
Confidence 99999999999998653
No 11
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=95.54 E-value=0.044 Score=43.66 Aligned_cols=78 Identities=9% Similarity=0.081 Sum_probs=50.8
Q ss_pred ccceeEEEEeCC-CCceecccccccCCCCcccHHHHHHHhcCCCCccccccCCeeeEEEee-ecCCCCCcHHHHHhhCCC
Q psy7709 246 FKHIPFRCYQGD-LPFSQCLVKPITNEGNPKTLQNLFEEVYPKISIDKCKLNGILVILVHG-IAIPLDTPLQWMSEHLSY 323 (336)
Q Consensus 246 ~r~IPiRIy~~~-~~~iQ~~v~p~~~~g~~~TL~d~L~~~lP~lf~~~~~~~~~~~viihG-I~vpld~pL~~L~~~l~~ 323 (336)
-+.|+||+.-.+ .+.++...--...+-+-.++-..|++.+. + + ...++++. ..++.|+.+..||++++.
T Consensus 11 ~~KV~V~~~~~~~~P~l~k~KflV~~~~t~~~~~~~lRkrL~-l------~--alFlyvn~~~~Ps~d~~m~~LY~~~kd 81 (96)
T 1wz3_A 11 VQKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLH-S------D--SLFVYVNSAFSPNPDESVIDLYNNFGF 81 (96)
T ss_dssp -CEEEEEEEECTTCCCCSCCEEEEETTSBTHHHHHHHHHHHT-C------S--SCEEEEEEEECCCTTSBHHHHHHHHCB
T ss_pred CCeEEEEEEECCCCCcccccEEEeCCCCcHHHHHHHHHHhcC-C------c--eEEEEECCcccCChhhHHHHHHHHhCC
Confidence 367999999764 45555432112222233344444555542 1 1 34568888 778899999999999999
Q ss_pred CCceEEEEEE
Q psy7709 324 PDNFLHIVVN 333 (336)
Q Consensus 324 ~DgFLhIvv~ 333 (336)
||||||.-+
T Consensus 82 -DGfLyi~Ys 90 (96)
T 1wz3_A 82 -DGKLVVNYA 90 (96)
T ss_dssp -TTBEEEEEE
T ss_pred -CCEEEEEEe
Confidence 999999765
No 12
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=95.21 E-value=0.06 Score=44.95 Aligned_cols=75 Identities=16% Similarity=0.210 Sum_probs=52.0
Q ss_pred cceeEEEEeCC---CCceec---ccccccCCCCcccHHHHH---HHhcCCCCccccccCCeeeEEEeeecCCCCCcHHHH
Q psy7709 247 KHIPFRCYQGD---LPFSQC---LVKPITNEGNPKTLQNLF---EEVYPKISIDKCKLNGILVILVHGIAIPLDTPLQWM 317 (336)
Q Consensus 247 r~IPiRIy~~~---~~~iQ~---~v~p~~~~g~~~TL~d~L---~~~lP~lf~~~~~~~~~~~viihGI~vpld~pL~~L 317 (336)
.+|||.+-... .|.+.. +|| ...|+++++ +..+- +-+ .....+.|++..++.++.+..|
T Consensus 35 ~rIPVIvEr~~~s~lP~LdK~KflVp------~~~tv~qf~~~IRkrl~-L~~-----~~alFl~Vnn~lPs~s~~m~~l 102 (125)
T 3m95_A 35 DRVPVIVEKAPKARLGDLDKKKYLVP------SDLTVGQFYFLIRKRIH-LRP-----EDALFFFVNNVIPPTSATMGSL 102 (125)
T ss_dssp TEEEEEEEECTTCSSCCCSCCEEEEE------TTSBHHHHHHHHHHHTT-CCT-----TSCCEEEBTTBCCCTTSBHHHH
T ss_pred CeEEEEEEecCCCCCccccCCEEEcC------CCCEeeeehhhhHhhcC-CCc-----cccEEEEECCccCCccchHHHH
Confidence 46999998763 233332 233 235777765 44442 211 2245678888888999999999
Q ss_pred HhhCCCCCceEEEEEE
Q psy7709 318 SEHLSYPDNFLHIVVN 333 (336)
Q Consensus 318 ~~~l~~~DgFLhIvv~ 333 (336)
|++++.-||||||...
T Consensus 103 Y~~~kdeDGfLY~~Ys 118 (125)
T 3m95_A 103 YQEHHDEDFFLYIAFS 118 (125)
T ss_dssp HHHHCCTTSCEEEEEE
T ss_pred HHHcCCCCCeEEEEec
Confidence 9999999999999765
No 13
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=94.68 E-value=0.08 Score=44.42 Aligned_cols=94 Identities=18% Similarity=0.217 Sum_probs=57.5
Q ss_pred hCChHhHHHHHhhhCCCCCCCCccceeEEEEeCC----CCceec---ccccccCCCCcccHHHHH---HHhcCCCCcccc
Q psy7709 224 NDKFDQFWVINKKLMEPGEGGGFKHIPFRCYQGD----LPFSQC---LVKPITNEGNPKTLQNLF---EEVYPKISIDKC 293 (336)
Q Consensus 224 ~~d~~~f~~in~kL~~~~~~~~~r~IPiRIy~~~----~~~iQ~---~v~p~~~~g~~~TL~d~L---~~~lP~lf~~~~ 293 (336)
.|.|++=..-..+|....+ .+|||.+-... .+.+.. +|+ ...|++++. +..+. +-++
T Consensus 15 ~~~~e~R~~e~~~ir~kyP----~kIPVIvEk~~~s~~~P~Ldk~KflVp------~~~tv~qf~~~iRkrL~-l~~~-- 81 (130)
T 2zjd_A 15 RRTFEQRVEDVRLIREQHP----TKIPVIIERYKGEKQLPVLDKTKFLVP------DHVNMSELIKIIRRRLQ-LNAN-- 81 (130)
T ss_dssp HSCHHHHHHHHHHHHHHCT----TEEEEEEEECTTCCSSCCCSCCEEEEE------TTCBHHHHHHHHHHHHT-CCTT--
T ss_pred hCCHHHHHHHHHHHHHhCC----CceEEEEEEcCCCCcCccccccEEEcC------CCCcHHHHHHHHHHHhC-CCCC--
Confidence 3444443333444443222 47999997542 233322 233 235666654 44442 2111
Q ss_pred ccCCeeeE-EEeeecCCCCCcHHHHHhhCCCCCceEEEEEE
Q psy7709 294 KLNGILVI-LVHGIAIPLDTPLQWMSEHLSYPDNFLHIVVN 333 (336)
Q Consensus 294 ~~~~~~~v-iihGI~vpld~pL~~L~~~l~~~DgFLhIvv~ 333 (336)
....+ ++++.-++.++.+..||++++.-||||||...
T Consensus 82 ---~alFl~~vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys 119 (130)
T 2zjd_A 82 ---QAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYA 119 (130)
T ss_dssp ---CCEEEEETTTEECCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred ---ceEEEEEECCccCCccchHHHHHHHhCCCCCEEEEEEe
Confidence 23345 78999889999999999999999999999764
No 14
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=90.14 E-value=1.1 Score=35.22 Aligned_cols=77 Identities=19% Similarity=0.179 Sum_probs=47.9
Q ss_pred cceeEEEEeC-CCCceecccccccCCCCcccHHHHH---HHhcCCCCccccccCCeeeEEEeee-cCCCCCcHHHHHhhC
Q psy7709 247 KHIPFRCYQG-DLPFSQCLVKPITNEGNPKTLQNLF---EEVYPKISIDKCKLNGILVILVHGI-AIPLDTPLQWMSEHL 321 (336)
Q Consensus 247 r~IPiRIy~~-~~~~iQ~~v~p~~~~g~~~TL~d~L---~~~lP~lf~~~~~~~~~~~viihGI-~vpld~pL~~L~~~l 321 (336)
+.|=||+.-. +.|.+....-... ...|+++++ +..+- +-+ .....+.|+.. .+.+|+.+..||+++
T Consensus 4 ~Kv~v~fk~~g~~P~l~k~KflVp---~~~tv~~~~~~lRkrL~-l~~-----~~alFlyVnn~~~P~~d~~~~~Ly~~~ 74 (91)
T 4gdk_A 4 KKIDILLKAVGDTPIMKTKKWAVE---RTRTIQGLIDFIKKFLK-LVA-----SEQLFIYVNQSFAPSPDQEVGTLYECF 74 (91)
T ss_dssp CEEEEEEEECSSSCCCSCCEEEEE---TTCBHHHHHHHHHHHTT-CCS-----SSCCEEEETTTBCCCTTCBHHHHHHHH
T ss_pred ceEEEEEEecCCCCcccccEEEcC---CCCCHHHHHHHHHHHhC-CCC-----CCeEEEEECCccCCChhhHHHHHHHHh
Confidence 3466666654 4455555321111 234666654 55442 211 23457888885 567799999999999
Q ss_pred CCCCceEEEEEE
Q psy7709 322 SYPDNFLHIVVN 333 (336)
Q Consensus 322 ~~~DgFLhIvv~ 333 (336)
+ -||||||.-+
T Consensus 75 k-~DGfLyv~Ys 85 (91)
T 4gdk_A 75 G-SDGKLVLHYC 85 (91)
T ss_dssp C-BTTEEEEEEE
T ss_pred C-CCCEEEEEEe
Confidence 9 9999999764
No 15
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=85.19 E-value=2.1 Score=33.53 Aligned_cols=74 Identities=7% Similarity=0.010 Sum_probs=43.7
Q ss_pred cceeEEEEeC-CCCceecccccccCCCCcccHHHH---HHHhcCCCCccccccCCeeeEEEeee-cCCCCCcHHHHHhhC
Q psy7709 247 KHIPFRCYQG-DLPFSQCLVKPITNEGNPKTLQNL---FEEVYPKISIDKCKLNGILVILVHGI-AIPLDTPLQWMSEHL 321 (336)
Q Consensus 247 r~IPiRIy~~-~~~~iQ~~v~p~~~~g~~~TL~d~---L~~~lP~lf~~~~~~~~~~~viihGI-~vpld~pL~~L~~~l 321 (336)
+.|=||.--. +.|.++...--.. ...|++++ |++.+-. ....+.|+.. .+++|+.+..||+++
T Consensus 7 ~Kv~vrfk~~g~~P~l~k~KflV~---~~~t~~~~v~~lRkrL~l---------~alFlyVNn~f~Ps~d~~~~~Ly~~f 74 (91)
T 3w1s_C 7 QKIQIKFQPIGSIGQLKPSVCKIS---MSQSFAMVILFLKRRLKM---------DHVYCYINNSFAPSPQQNIGELWMQF 74 (91)
T ss_dssp CEEEEEEEECCC-------EEEEE---TTSBHHHHHHHHHHHHTC---------SCCEEEETTTBCCCTTSBHHHHHHHH
T ss_pred CeEEEEEEecCCCCcccccEEEcC---CCCCHHHHHHHHHHhhCC---------ceEEEEECCccCCCcccHHHHHHHHh
Confidence 3466666543 4566665321111 12455554 4555531 1346888884 677899999999999
Q ss_pred CCCCceEEEEEE
Q psy7709 322 SYPDNFLHIVVN 333 (336)
Q Consensus 322 ~~~DgFLhIvv~ 333 (336)
+ -||||||.-+
T Consensus 75 k-~dg~Lyv~Ys 85 (91)
T 3w1s_C 75 K-TNDELIVSYC 85 (91)
T ss_dssp C-BTTEEEEEEE
T ss_pred C-CCCEEEEEEe
Confidence 9 7999999765
No 16
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=25.80 E-value=46 Score=25.20 Aligned_cols=30 Identities=13% Similarity=0.229 Sum_probs=19.6
Q ss_pred eEEEEeCCCCceecccccccCCCCcccHHHHHHHhc
Q psy7709 250 PFRCYQGDLPFSQCLVKPITNEGNPKTLQNLFEEVY 285 (336)
Q Consensus 250 PiRIy~~~~~~iQ~~v~p~~~~g~~~TL~d~L~~~l 285 (336)
-+|+|+|+....---+.| | .||.|||.+.+
T Consensus 3 ~irvhLPn~QrT~V~Vrp----G--~tlrdaL~KaL 32 (77)
T 1c1y_B 3 TIRVFLPNKQRTVVNVRN----G--MSLHDCLMKAL 32 (77)
T ss_dssp EEEEEETTTEEEEEECCT----T--CBHHHHHHHHH
T ss_pred eEEEECCCCceEEEEecC----C--cCHHHHHHHHH
Confidence 489999875222222222 3 79999998876
No 17
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=25.42 E-value=67 Score=22.51 Aligned_cols=51 Identities=10% Similarity=0.087 Sum_probs=32.2
Q ss_pred EEEEeCCCCceecccccccCCCCcccHHHHHHHhcCCCCccccccCCeeeEEEeeecCCCCCcHH
Q psy7709 251 FRCYQGDLPFSQCLVKPITNEGNPKTLQNLFEEVYPKISIDKCKLNGILVILVHGIAIPLDTPLQ 315 (336)
Q Consensus 251 iRIy~~~~~~iQ~~v~p~~~~g~~~TL~d~L~~~lP~lf~~~~~~~~~~~viihGI~vpld~pL~ 315 (336)
++|+++++...+- + . ..|+.|++..+-..+. ....-+.++|--++++++|.
T Consensus 3 i~i~~p~g~~~~~--~----~--g~T~~dla~~i~~~l~------~~~vaa~vNg~lvdl~~~L~ 53 (73)
T 2kmm_A 3 VMVFTPKGEIKRL--P----Q--GATALDFAYSLHSDLG------DHCIGAKVNHKLVPLSYVLN 53 (73)
T ss_dssp EEEECTTCCEEEE--C----T--TCBHHHHHHHHCSHHH------HTEEEEEETTEECCTTCBCC
T ss_pred EEEEcCCCCEEEc--C----C--CCcHHHHHHHHhhccc------cceEEEEECCEEeCCCcCcC
Confidence 5666665443332 1 2 3699999987744331 12344678999999998875
No 18
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=23.68 E-value=48 Score=25.61 Aligned_cols=30 Identities=10% Similarity=0.237 Sum_probs=19.8
Q ss_pred eEEEEeCCCCceecccccccCCCCcccHHHHHHHhc
Q psy7709 250 PFRCYQGDLPFSQCLVKPITNEGNPKTLQNLFEEVY 285 (336)
Q Consensus 250 PiRIy~~~~~~iQ~~v~p~~~~g~~~TL~d~L~~~l 285 (336)
=+|+|+|+....---+.| | .||.|||.+.+
T Consensus 9 ~irvhLPn~QrT~V~Vrp----G--~tlrdaL~KaL 38 (86)
T 1wxm_A 9 TVKVYLPNKQRTVVTVRD----G--MSVYDSLDKAL 38 (86)
T ss_dssp EEEEECSSSCEEEEECCS----S--CBSHHHHHHHH
T ss_pred eEEEECCCCCeEEEEecC----C--cCHHHHHHHHH
Confidence 489999875332222332 3 79999998875
No 19
>1yyp_B DNA polymerase, POL; processivity fold (SAME fold AS HSV UL42, PCNA, and homotrim sliding clamps), replication-transferase complex; HET: DNA; 2.50A {Human herpesvirus 5}
Probab=23.66 E-value=21 Score=21.63 Aligned_cols=9 Identities=22% Similarity=0.191 Sum_probs=7.6
Q ss_pred eeEEEEeCC
Q psy7709 249 IPFRCYQGD 257 (336)
Q Consensus 249 IPiRIy~~~ 257 (336)
+|.|||+++
T Consensus 1 lP~RiYl~~ 9 (26)
T 1yyp_B 1 LPRRLHLEP 9 (26)
T ss_pred CCceEecCH
Confidence 589999975
No 20
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=22.42 E-value=56 Score=25.68 Aligned_cols=28 Identities=11% Similarity=0.223 Sum_probs=20.0
Q ss_pred eEEEEeCCC--CceecccccccCCCCcccHHHHHHHhc
Q psy7709 250 PFRCYQGDL--PFSQCLVKPITNEGNPKTLQNLFEEVY 285 (336)
Q Consensus 250 PiRIy~~~~--~~iQ~~v~p~~~~g~~~TL~d~L~~~l 285 (336)
=+|+|+|+. +.+|. .| | .||.|||.+.+
T Consensus 19 ~irvhLPNqQrT~V~V--rp----G--~tlrdAL~KaL 48 (95)
T 2l05_A 19 IVRVFLPNKQRTVVPA--RC----G--VTVRDSLKKAL 48 (95)
T ss_dssp EEEEEETTTEEEEEEC--CT----T--CBHHHHHHHHH
T ss_pred EEEEECCCCCeEEEEe--cC----C--cCHHHHHHHHH
Confidence 689999875 34443 22 3 79999998875
No 21
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=21.94 E-value=58 Score=25.65 Aligned_cols=56 Identities=14% Similarity=0.213 Sum_probs=31.5
Q ss_pred eEEEEeCCC--CceecccccccCCCCcccHHHHHHHhcCCCCccccccCCeeeEEEe-----eecCCCCCcHHHHH
Q psy7709 250 PFRCYQGDL--PFSQCLVKPITNEGNPKTLQNLFEEVYPKISIDKCKLNGILVILVH-----GIAIPLDTPLQWMS 318 (336)
Q Consensus 250 PiRIy~~~~--~~iQ~~v~p~~~~g~~~TL~d~L~~~lP~lf~~~~~~~~~~~viih-----GI~vpld~pL~~L~ 318 (336)
=||+|+|+. +.+|. .| | .||.|+|.+.+-.-- -......+.. +-.|+.|+.+.+|-
T Consensus 15 ~irvhLPNqQrT~V~V--rp----G--~tlrdaL~KaLk~R~-----L~pe~C~Vy~~~~~~~~~I~WdtDi~~L~ 77 (96)
T 3ny5_A 15 IVRVFLPNKQRTVVPA--RC----G--VTVRDSLKKALMMRG-----LIPECCAVYRIQDGEKKPIGWDTDISWLT 77 (96)
T ss_dssp EEEEEETTTEEEEEEC--CT----T--CBHHHHHHHHHHTTT-----CCGGGEEEEECC---CEEECTTBBGGGGT
T ss_pred EEEEECCCCceEEEEe--cC----C--cCHHHHHHHHHHHcC-----CChHHeEEEEccCCCcCcccccccchhcc
Confidence 489999875 33332 22 3 799999988763110 0112222222 23468888887653
Done!