RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy7709
         (336 letters)



>gnl|CDD|217897 pfam04106, APG5, Autophagy protein Apg5.  Apg5 is directly required
           for the import of aminopeptidase I via the
           cytoplasm-to-vacuole targeting pathway.
          Length = 195

 Score =  230 bits (589), Expect = 1e-75
 Identities = 86/195 (44%), Positives = 126/195 (64%), Gaps = 11/195 (5%)

Query: 145 HYPIGLLYDLHVTDNQ-----LPWNITVHFDKFPANEILHCPSREAVESHFMSCIKEADV 199
           HYP+G+LYDL    +      LPW +TVHF  +P++E++ C S ++V+ HFM+ +KEAD 
Sbjct: 2   HYPVGVLYDLLAGASPLTKSSLPWRLTVHFSDYPSDELIPCDSEDSVKDHFMNSLKEADF 61

Query: 200 LKHR-SQIVSNMQKKEHNQLWLGLQNDKFDQFWVINKKLMEPGEGGGFKHIPFRCYQGDL 258
           L++  S+++ N+ K +  QLW  + N  FD FW IN KLMEP     F+HIP R Y  + 
Sbjct: 62  LRNGTSKVIMNLSKADSKQLWKSVVNHNFDDFWRINNKLMEPP-SSKFRHIPVRIYLPNT 120

Query: 259 -PFSQCLVKPITNEGNPKTLQNLFEEVYPKISIDKCKLNGILVILVHGIAIPLDTPLQWM 317
            P  Q L+ P++ EG P+TL +   E+ P++   + +   +   ++HGI +PLD PLQW+
Sbjct: 121 APVIQALIPPLSEEGQPQTLGDALSELLPELFPSEEE---LAKPIIHGIEVPLDAPLQWL 177

Query: 318 SEHLSYPDNFLHIVV 332
            E+LSYPDNFLHIVV
Sbjct: 178 YENLSYPDNFLHIVV 192


>gnl|CDD|202449 pfam02886, LBP_BPI_CETP_C, LBP / BPI / CETP family, C-terminal
           domain.  The N and C terminal domains of the
           LBP/BPI/CETP family are structurally similar.
          Length = 238

 Score = 31.2 bits (71), Expect = 0.56
 Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 5/65 (7%)

Query: 270 NEGNPKTLQNLFEEVYPKISIDKCKLNGILVILVHGIAIPLDTPLQWMSEHLSYPDNFLH 329
              + ++LQ L   +             +   L  G  +PL   +Q    HL   D FL 
Sbjct: 177 GLFSVESLQALLNYMITIFLEPL-----VNEKLQKGFPLPLPKGVQLKDLHLQIHDGFLL 231

Query: 330 IVVNV 334
           +  +V
Sbjct: 232 LGADV 236


>gnl|CDD|150957 pfam10367, Vps39_2, Vacuolar sorting protein 39 domain 2.  This
           domain is found on the vacuolar sorting protein Vps39
           which is a component of the C-Vps complex. Vps39 is
           thought to be required for the fusion of endosomes and
           other types of transport intermediates with the vacuole.
           In Saccharomyces cerevisiae, Vps39 has been shown to
           stimulate nucleotide exchange. This domain is involved
           in localisation and in mediating the interactions of
           Vps39 with Vps11.
          Length = 109

 Score = 29.1 bits (66), Expect = 1.3
 Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 168 HFDKFPANEILHCPSRE----AVESHFMSCIKEADVLKHRSQIVSNMQKKEHNQL 218
           H ++     +L     +     +ES     ++ +   K  +Q+V N+ K E+ Q+
Sbjct: 7   HGERIDPASVLDLLPDDVPLQLLESFLERALRNSTEQKREAQVVKNLLKAENLQV 61


>gnl|CDD|226406 COG3889, COG3889, Predicted solute binding protein [General
           function prediction only].
          Length = 872

 Score = 28.7 bits (64), Expect = 5.6
 Identities = 10/37 (27%), Positives = 16/37 (43%)

Query: 131 FLSRTEALSQSSGRHYPIGLLYDLHVTDNQLPWNITV 167
           F+ R E   +  G      + Y L  T  ++PWN+  
Sbjct: 204 FVIRVEDERKDEGFQPFKWIEYYLGFTVTRIPWNLQK 240


>gnl|CDD|214514 smart00094, TR_FER, Transferrin. 
          Length = 332

 Score = 28.4 bits (64), Expect = 5.6
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 19/70 (27%)

Query: 137 ALSQSSGRHYPIGLLYDLHVTDNQLPWNITVHFDKFPANEILHCPSREAVESHF-MSCIK 195
            + +++G + P+GLLY      N+L                 +CP  +AV   F  SC  
Sbjct: 113 GVGRTAGWNIPMGLLY------NKLVI------------RPPNCPFEKAVSKFFSASCAP 154

Query: 196 EADVLKHRSQ 205
            AD     S 
Sbjct: 155 GADKPDPNSN 164


>gnl|CDD|224818 COG1906, COG1906, Uncharacterized conserved protein [Function
           unknown].
          Length = 388

 Score = 28.2 bits (63), Expect = 6.9
 Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 14/68 (20%)

Query: 256 GDLPFSQCLVKPITNEGNPKTLQNLFEEVYPKISIDKCKLNGILVILVHGIAIPLDTPLQ 315
           G L F+  L +        + L++L   +YP           I ++LV  + + LD    
Sbjct: 184 GYLFFNGPLKE---RLSKSRNLRDLLINLYP-----------IAIVLVLSVLLGLDLLYG 229

Query: 316 WMSEHLSY 323
                LS 
Sbjct: 230 SFVAFLSI 237


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.323    0.140    0.446 

Gapped
Lambda     K      H
   0.267   0.0733    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,416,130
Number of extensions: 1659156
Number of successful extensions: 991
Number of sequences better than 10.0: 1
Number of HSP's gapped: 986
Number of HSP's successfully gapped: 13
Length of query: 336
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 239
Effective length of database: 6,635,264
Effective search space: 1585828096
Effective search space used: 1585828096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)