RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7709
         (336 letters)



>d1wzua1 c.145.1.1 (A:1-298) Quinolinate synthetase A, NadA
           {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 298

 Score = 29.2 bits (65), Expect = 0.60
 Identities = 12/108 (11%), Positives = 32/108 (29%), Gaps = 14/108 (12%)

Query: 42  RYVWILLDREVLREVWDGKLPVCFTLLADQVSTVGE--PDPSYLMVPRLSYFPLVLEKSY 99
            YV  +  ++++     G   V      D V    +  P+   ++ P             
Sbjct: 151 HYVAKMTGKKIIPVPSKGHCYVHQKFTLDDVERAKKLHPNAKLMIHPECIPEVQEKAD-- 208

Query: 100 PFVGIGTTHVQHCFTSV---------IHHAIVNKHPARNFFLSRTEAL 138
             +      ++               + + +   +P + F+ +R +A 
Sbjct: 209 -IIASTGGMIKRACEWDEWVVFTEREMVYRLRKLYPQKKFYPAREDAF 255


>d1g61a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6)
           {Archaeon Methanococcus jannaschii [TaxId: 2190]}
          Length = 225

 Score = 27.8 bits (62), Expect = 1.7
 Identities = 14/76 (18%), Positives = 30/76 (39%), Gaps = 6/76 (7%)

Query: 263 CLVKPITNEGNPKTLQNLFEEVYPKISIDKCKLNGILVILV-HGIAIP---LDTPLQWMS 318
            L+    ++ +   +  + E    + +I    L G L +   +G+ +P    D  L  + 
Sbjct: 24  TLLPIFLDKDDVNEVSEVLETKCLQTNIGGSSLVGSLSVANKYGLLLPKIVEDEELDRIK 83

Query: 319 EHLSYPDNFLHIVVNV 334
             L   +N L + V +
Sbjct: 84  NFL--KENNLDLNVEI 97


>d2ap9a1 c.73.1.2 (A:6-296) N-acetyl-l-glutamate kinase
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 291

 Score = 26.4 bits (57), Expect = 5.1
 Identities = 6/45 (13%), Positives = 16/45 (35%), Gaps = 6/45 (13%)

Query: 273 NPKTLQNLFEEVYPKISIDKCKLNGILVILVHGIAIPLDTPLQWM 317
           +    +    +      +   +  GI  ++VHG    +   L+ +
Sbjct: 39  DDTLRRAFAAD------MAFLRNCGIHPVVVHGGGPQITAMLRRL 77


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.140    0.446 

Gapped
Lambda     K      H
   0.267   0.0607    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,322,876
Number of extensions: 61798
Number of successful extensions: 130
Number of sequences better than 10.0: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 4
Length of query: 336
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 250
Effective length of database: 1,226,816
Effective search space: 306704000
Effective search space used: 306704000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.5 bits)