BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7710
(473 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DME|A Chain A, Crystal Structure Of Conserved Exported Protein From
Bordetella Pertussis. Northeast Structural Genomics
Target Ber141
pdb|3DME|B Chain B, Crystal Structure Of Conserved Exported Protein From
Bordetella Pertussis. Northeast Structural Genomics
Target Ber141
Length = 369
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 124/263 (47%), Gaps = 15/263 (5%)
Query: 71 ATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAY 130
A AR L ++ + E + +G + NS V+HAGIYY +LKA+LCV G +L Y
Sbjct: 18 AIARALAAG--GHEVLVAEAAEGIGTGTSSRNSEVIHAGIYYPADSLKARLCVRGKHLLY 75
Query: 131 EYFDKRNIPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKG 189
EY R +P+++ GKLIVA ++ + L + R+ N V D++ + + +EP
Sbjct: 76 EYCAARGVPHQRLGKLIVATSDAEASQLDSIARRAGANGVDDLQHIDGAAARRLEPALHC 135
Query: 190 VKAIHSPNTGIVD-WGLVTRVMGEEFCELGGEIRLNQQVESFKENPES---VTISTKQGD 245
A+ SP+TGIVD L+ G+ + G ++ + + + + PE + +
Sbjct: 136 TAALVSPSTGIVDSHALMLAYQGDAESD-GAQLVFHTPLIAGRVRPEGGFELDFGGAEPM 194
Query: 246 HLESSYALVCAGLQADEMALKSGCSLEPAIVP---FRGEYLLLNPAKQHLVRGNIYPVPD 302
L + AGL A +A + +I P +G Y L A + IYPV
Sbjct: 195 TLSCRVLINAAGLHAPGLARRIEGIPRDSIPPEYLCKGSYFTL--AGRAPFSRLIYPV-- 250
Query: 303 PNFPFLGVHFTPRMDGSVWLGPN 325
P LGVH T + G GP+
Sbjct: 251 PQHAGLGVHLTLDLGGQAKFGPD 273
>pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
pdb|2CDU|B Chain B, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
Length = 452
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/160 (20%), Positives = 63/160 (39%), Gaps = 13/160 (8%)
Query: 207 TRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALK 266
T ++ +++ G + L +V +F+E + + T G ++S A++C G + + LK
Sbjct: 194 TDILAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTLDGKEIKSDIAILCIGFRPNTELLK 253
Query: 267 SGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTP-RMDGSVWLGPN 325
++ EY+ H +I+ D VH+ P + + L N
Sbjct: 254 GKVAMLDNGAIITDEYM-------HSSNRDIFAAGDS----AAVHYNPTNSNAYIPLATN 302
Query: 326 AVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYG 365
AV + G + V+++ T G G Y G
Sbjct: 303 AVRQGRLVGLNLTEDKVKDM-GTQSSSGLKLYGRTYVSTG 341
>pdb|3NN3|A Chain A, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii R173a Mutant
pdb|3NN3|B Chain B, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii R173a Mutant
pdb|3NN3|C Chain C, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii R173a Mutant
pdb|3NN3|D Chain D, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii R173a Mutant
pdb|3NN3|E Chain E, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii R173a Mutant
Length = 241
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%)
Query: 178 EEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKEN 233
E + PY K VKA +TG+ D +T E + +R QQV+ F+ N
Sbjct: 162 EHTQAALPYLKTVKAKLYHSTGLDDVDFITYFETERLEDFHNLVRALQQVKEFRHN 217
>pdb|3FMW|A Chain A, The Crystal Structure Of Mtmoiv, A Baeyer-Villiger
Monooxygenase From The Mithramycin Biosynthetic Pathway
In Streptomyces Argillaceus.
pdb|3FMW|B Chain B, The Crystal Structure Of Mtmoiv, A Baeyer-Villiger
Monooxygenase From The Mithramycin Biosynthetic Pathway
In Streptomyces Argillaceus.
pdb|3FMW|C Chain C, The Crystal Structure Of Mtmoiv, A Baeyer-Villiger
Monooxygenase From The Mithramycin Biosynthetic Pathway
In Streptomyces Argillaceus
Length = 570
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 415 DFGVKAIHSPHTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPEMVD 466
DFG+ P+TG+V ++ E E G EI +V +++ E V+
Sbjct: 131 DFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVE 182
>pdb|3BHF|A Chain A, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Peg As Precipitant
pdb|3BHF|B Chain B, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Peg As Precipitant
pdb|3BHK|A Chain A, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Phosphate As Precipitant
pdb|3BHK|B Chain B, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Phosphate As Precipitant
Length = 390
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 6/111 (5%)
Query: 172 VRLVSAEEIKTIEPYC---KGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVE 228
V L+ +EI P + AI PN+G++ R E G ++ + +VE
Sbjct: 116 VDLLEGDEINKRWPGITVPENYNAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVE 175
Query: 229 SFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFR 279
F +P+SV I T G + + + A L S +L+ + P+R
Sbjct: 176 DFDISPDSVKIETANGSYTADK---LIVSMGAWNSKLLSKLNLDIPLQPYR 223
>pdb|3M0O|A Chain A, Crystal Structure Of The Lys265met Mutant Of Monomeric
Sarcosine Oxidase
pdb|3M0O|B Chain B, Crystal Structure Of The Lys265met Mutant Of Monomeric
Sarcosine Oxidase
Length = 389
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 6/111 (5%)
Query: 172 VRLVSAEEIKTIEPYC---KGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVE 228
V L+ +EI P + AI PN+G++ R E G ++ + +VE
Sbjct: 115 VDLLEGDEINKRWPGITVPENYNAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVE 174
Query: 229 SFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFR 279
F +P+SV I T G + + + A L S +L+ + P+R
Sbjct: 175 DFDISPDSVKIETANGSYTADK---LIVSMGAWNSKLLSKLNLDIPLQPYR 222
>pdb|3M12|A Chain A, Crystal Structure Of The Lys265arg Phosphate-Crytsallized
Mu Monomeric Sarcosine Oxidase
pdb|3M12|B Chain B, Crystal Structure Of The Lys265arg Phosphate-Crytsallized
Mu Monomeric Sarcosine Oxidase
pdb|3M13|A Chain A, Crystal Structure Of The Lys265arg Peg-crystallized Mutant
Of Monomeric Sarcosine Oxidase
pdb|3M13|B Chain B, Crystal Structure Of The Lys265arg Peg-crystallized Mutant
Of Monomeric Sarcosine Oxidase
pdb|3M13|C Chain C, Crystal Structure Of The Lys265arg Peg-crystallized Mutant
Of Monomeric Sarcosine Oxidase
pdb|3M13|D Chain D, Crystal Structure Of The Lys265arg Peg-crystallized Mutant
Of Monomeric Sarcosine Oxidase
Length = 389
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 6/111 (5%)
Query: 172 VRLVSAEEIKTIEPYC---KGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVE 228
V L+ +EI P + AI PN+G++ R E G ++ + +VE
Sbjct: 115 VDLLEGDEINKRWPGITVPENYNAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVE 174
Query: 229 SFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFR 279
F +P+SV I T G + + + A L S +L+ + P+R
Sbjct: 175 DFDISPDSVKIETANGSYTADK---LIVSMGAWNSKLLSKLNLDIPLQPYR 222
>pdb|1L9C|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
pdb|1L9C|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
pdb|1L9D|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
pdb|1L9D|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
Length = 389
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 6/111 (5%)
Query: 172 VRLVSAEEIKTIEPYC---KGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVE 228
V L+ +EI P + AI PN+G++ R E G ++ + +VE
Sbjct: 115 VDLLEGDEINKRWPGITVPENYNAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVE 174
Query: 229 SFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFR 279
F +P+SV I T G + + + A L S +L+ + P+R
Sbjct: 175 DFDISPDSVKIETANGSYTADK---LIVSMGAWNSKLLSKLNLDIPLQPYR 222
>pdb|1EL5|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
Dimethylglycine
pdb|1EL5|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
Dimethylglycine
pdb|1EL7|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methytelluro]acetate
pdb|1EL7|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methytelluro]acetate
pdb|1EL8|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methylseleno]cetate
pdb|1EL8|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methylseleno]cetate
pdb|1L9E|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
pdb|1L9E|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
pdb|2A89|A Chain A, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2A89|B Chain B, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2GB0|A Chain A, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2GB0|B Chain B, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2GF3|A Chain A, Structure Of The Complex Of Monomeric Sarcosine With Its
Substrate Analogue Inhibitor 2-Furoic Acid At 1.3 A
Resolution.
pdb|2GF3|B Chain B, Structure Of The Complex Of Monomeric Sarcosine With Its
Substrate Analogue Inhibitor 2-Furoic Acid At 1.3 A
Resolution.
pdb|3QSE|A Chain A, Crystal Structure For The Complex Of Substrate-Reduced
Msox With Sarcosine
pdb|3QSE|B Chain B, Crystal Structure For The Complex Of Substrate-Reduced
Msox With Sarcosine
pdb|3QSM|A Chain A, Crystal Structure For The Msox.Chloride Binary Complex
pdb|3QSM|B Chain B, Crystal Structure For The Msox.Chloride Binary Complex
pdb|3QSS|A Chain A, Crystal Structure For The Msox.Chloride.Mta Ternary
Complex
pdb|3QSS|B Chain B, Crystal Structure For The Msox.Chloride.Mta Ternary
Complex
Length = 389
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 6/111 (5%)
Query: 172 VRLVSAEEIKTIEPYC---KGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVE 228
V L+ +EI P + AI PN+G++ R E G ++ + +VE
Sbjct: 115 VDLLEGDEINKRWPGITVPENYNAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVE 174
Query: 229 SFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFR 279
F +P+SV I T G + + + A L S +L+ + P+R
Sbjct: 175 DFDISPDSVKIETANGSYTADK---LIVSMGAWNSKLLSKLNLDIPLQPYR 222
>pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase
pdb|4EMI|A Chain A, Toluene Dioxygenase Reductase In Reduced State In Complex
With Nad+
pdb|4EMJ|A Chain A, Complex Between The Reductase And Ferredoxin Components Of
Toluene Dioxygenase
Length = 410
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
Query: 205 LVTRVMGEE--------FCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCA 256
L+ RV+G ELG ++ L V F + + G + AL+C
Sbjct: 178 LLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICV 237
Query: 257 GLQ-ADEMALKSGCSLEPAIV 276
G + AD++A ++G + + ++
Sbjct: 238 GAEPADQLARQAGLACDRGVI 258
>pdb|1EL9|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methylthio]acetate
pdb|1EL9|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methylthio]acetate
pdb|1ELI|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
Pyrrole-2- Carboxylate
pdb|1ELI|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
Pyrrole-2- Carboxylate
Length = 389
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 191 KAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESS 250
AI PN+G++ R E G ++ + +VE F +P+SV I T G + +
Sbjct: 137 NAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANGSYT-AD 195
Query: 251 YALVCAGLQADEMALKSGCSLEPAIVPFR 279
+V G A L S +L+ + P+R
Sbjct: 196 KLIVSXG--AWNSKLLSKLNLDIPLQPYR 222
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,961,706
Number of Sequences: 62578
Number of extensions: 592684
Number of successful extensions: 1164
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1156
Number of HSP's gapped (non-prelim): 15
length of query: 473
length of database: 14,973,337
effective HSP length: 102
effective length of query: 371
effective length of database: 8,590,381
effective search space: 3187031351
effective search space used: 3187031351
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)