BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7710
(473 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A7SMW7|L2HDH_NEMVE L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Nematostella
vectensis GN=v1g172254 PE=3 SV=1
Length = 456
Score = 422 bits (1085), Expect = e-117, Method: Compositional matrix adjust.
Identities = 206/373 (55%), Positives = 262/373 (70%), Gaps = 14/373 (3%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTL 117
YDV +VGGGIVG+ATAREL L +PK+ C++EKEKEL MHQ+GHNSGV+H GIYY PG+L
Sbjct: 40 YDVAIVGGGIVGLATARELILRHPKLTFCVLEKEKELSMHQSGHNSGVIHCGIYYTPGSL 99
Query: 118 KAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNEQLEPL-HDLYERSIQNNVKDVRLVS 176
KAKLCV+G++L Y+Y D+ NIPYKKCGKLIVA+ ++ PL ++LYER +N VKD+ +V
Sbjct: 100 KAKLCVQGLDLTYQYCDEHNIPYKKCGKLIVAVEDKEIPLLNNLYERGKKNGVKDLTMVD 159
Query: 177 AEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPES 236
IK IEP+C+G+ AI SPNTGIVDW V G++F + GG+I +V FK ES
Sbjct: 160 KRGIKEIEPHCEGMFAIVSPNTGIVDWAQVALAYGDDFRKGGGDIFTGYEVTDFKCASES 219
Query: 237 -------------VTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYL 283
VT+ + ++ Y + C GL +D +A KSGC+ EP IVPFRG+YL
Sbjct: 220 GKSQEKEAGLTHPVTVFSNNKQTIKCRYVITCGGLYSDRLAEKSGCNREPRIVPFRGDYL 279
Query: 284 LLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVR 343
+L P K HLV+GNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAF +EGY D ++R
Sbjct: 280 VLKPEKCHLVKGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFAREGYNLLDINLR 339
Query: 344 ELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRA 403
+L L + G +L KY +G E + +V +L++YI + A D+ GPSGVRA
Sbjct: 340 DLADALAFRGLRQLMFKYFSFGVGEYYRGLNHAAQVKQLQKYIPSVTADDVVSGPSGVRA 399
Query: 404 QALSSSGDLVDDF 416
QAL G+LVDDF
Sbjct: 400 QALDRDGNLVDDF 412
Score = 40.8 bits (94), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 417 GVKAIHSPHTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFK 459
G+ AI SP+TGIVDW V G++F + GG+I +V FK
Sbjct: 172 GMFAIVSPNTGIVDWAQVALAYGDDFRKGGGDIFTGYEVTDFK 214
>sp|A8X2R1|L2HDH_CAEBR L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Caenorhabditis
briggsae GN=CBG06643 PE=3 SV=2
Length = 434
Score = 419 bits (1077), Expect = e-116, Method: Compositional matrix adjust.
Identities = 200/366 (54%), Positives = 268/366 (73%), Gaps = 8/366 (2%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTL 117
YD+V+VGGGIVG ATAR+L + P +KI LVEKEKEL +HQ+GHNSGV+HAGIYY PG+L
Sbjct: 26 YDLVIVGGGIVGCATARQLLIEKPNLKIALVEKEKELAVHQSGHNSGVIHAGIYYTPGSL 85
Query: 118 KAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNEQLEP-LHDLYERSIQNNVKDVRLVS 176
KAKLCVEG++L+YE+FDK IPYKK GKLIVA+ ++ P L L+ R+ N +D+ ++
Sbjct: 86 KAKLCVEGLDLSYEFFDKEKIPYKKTGKLIVAVEQEEVPRLDALFARAQTNGCRDIEMID 145
Query: 177 AEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKEN--- 233
++ I IEP+CKG+KA+ SP+TGIVDWG VT+ GE+F + GG+I + +E ++N
Sbjct: 146 SKRITDIEPHCKGLKALWSPHTGIVDWGYVTKKFGEDFEKRGGKIYTSYPLEKIEDNLKD 205
Query: 234 ---PESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQ 290
P V+ D E+ + CAGLQ+D +A SGCS +P IVPFRGEYLLL P K+
Sbjct: 206 SNYPIRVSSDPSYAD-FETKNLITCAGLQSDRVAALSGCSTDPKIVPFRGEYLLLKPEKR 264
Query: 291 HLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLR 350
HLV+ NIYPVPDP FPFLGVHFTPRM+G +WLGPNAVLA+K+EGY + S +L +L
Sbjct: 265 HLVKTNIYPVPDPRFPFLGVHFTPRMNGDIWLGPNAVLAYKREGYSYFSISPSDLLESLS 324
Query: 351 YPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSG 410
Y G +L K+ +G KE+ + + +V +L+++I E++ D+ RGPSGVRAQA+ S+G
Sbjct: 325 YSGMQKLVKKHFTFGIKELYRGIWIAAQVKQLQRFIPELKYSDVTRGPSGVRAQAMDSAG 384
Query: 411 DLVDDF 416
+LVDDF
Sbjct: 385 NLVDDF 390
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 33/45 (73%)
Query: 417 GVKAIHSPHTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKEN 461
G+KA+ SPHTGIVDWG VT+ GE+F + GG+I + +E ++N
Sbjct: 158 GLKALWSPHTGIVDWGYVTKKFGEDFEKRGGKIYTSYPLEKIEDN 202
>sp|Q9N4Z0|L2HDH_CAEEL L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Caenorhabditis
elegans GN=Y45G12B.3 PE=3 SV=2
Length = 433
Score = 412 bits (1059), Expect = e-114, Method: Compositional matrix adjust.
Identities = 194/364 (53%), Positives = 268/364 (73%), Gaps = 5/364 (1%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTL 117
YD+V+VGGGIVG ATAR+L + P++K+ L+EKEKEL +HQ+GHNSGV+HAGIYY PG+L
Sbjct: 26 YDLVIVGGGIVGCATARQLLIEKPQLKVALIEKEKELAVHQSGHNSGVIHAGIYYTPGSL 85
Query: 118 KAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALN-EQLEPLHDLYERSIQNNVKDVRLVS 176
KAKLCVEG++L+YE+FDK +PYKK GKLIVA+ E++ L L+ R+ N +D+ ++
Sbjct: 86 KAKLCVEGLDLSYEFFDKEKVPYKKTGKLIVAVEPEEVPRLDALFSRAQTNGCRDIEMID 145
Query: 177 AEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPE- 235
+ +I +EP+C+G+KA+ SP+TGIVDWG VT+ GE+F + GG+I + +E +N +
Sbjct: 146 SSKITELEPHCRGLKALWSPHTGIVDWGYVTKRFGEDFEKRGGKIYTSYPLEKISDNHDP 205
Query: 236 SVTISTKQGDHL---ESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHL 292
I G L E+ + CAGLQ+D +A SGCS +P IVPFRGEYLLL P K+HL
Sbjct: 206 GYPIRVSSGPALAEFETKNLITCAGLQSDRVAALSGCSTDPKIVPFRGEYLLLKPEKRHL 265
Query: 293 VRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYP 352
V+ NIYPVPDP FPFLGVHFTPRM+G +WLGPNAVLA+K+EGY + S +L +L Y
Sbjct: 266 VKTNIYPVPDPRFPFLGVHFTPRMNGDIWLGPNAVLAYKREGYSYFSISPSDLLESLSYS 325
Query: 353 GFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDL 412
G +L K+ +G KE+ + + +V +L+++I E++ D+ RGP+GVRAQA+ S+G+L
Sbjct: 326 GMQKLVKKHFTFGIKELYRGVWIAAQVKQLQRFIPELKLSDVTRGPAGVRAQAMDSAGNL 385
Query: 413 VDDF 416
VDDF
Sbjct: 386 VDDF 389
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 32/45 (71%)
Query: 417 GVKAIHSPHTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKEN 461
G+KA+ SPHTGIVDWG VT+ GE+F + GG+I + +E +N
Sbjct: 158 GLKALWSPHTGIVDWGYVTKRFGEDFEKRGGKIYTSYPLEKISDN 202
>sp|A7MBI3|L2HDH_BOVIN L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Bos taurus
GN=L2HGDH PE=2 SV=1
Length = 463
Score = 370 bits (950), Expect = e-101, Method: Compositional matrix adjust.
Identities = 180/359 (50%), Positives = 243/359 (67%), Gaps = 12/359 (3%)
Query: 70 VATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLA 129
+A+AR L L +P + I ++EKEK L +HQTGHNSGV+H+GIYYKP +LKAKLCV+G L
Sbjct: 61 LASARALILRHPALSIGVLEKEKNLAVHQTGHNSGVIHSGIYYKPESLKAKLCVQGAALI 120
Query: 130 YEYFDKRNIPYKKCGKLIVAL-NEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCK 188
YEY +++ I YK+CGKLIVA+ E++ L LYER +QN V+ +RL+ E+IK EPYC+
Sbjct: 121 YEYCNQKGISYKQCGKLIVAVEQEEIPRLQALYERGLQNGVQGLRLIQQEDIKKKEPYCR 180
Query: 189 GVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPES-----------V 237
G+ AI P TGIVD+ V ++F E GG + N +VE + ES +
Sbjct: 181 GLMAIDCPYTGIVDYRQVAFSFAKDFQEAGGSVLTNFEVEDIEMARESPSRSKDGMKYPI 240
Query: 238 TISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNI 297
I +G+ + Y + CAGL +D ++ SGC+ P IVPFRG+YL+L P K++LV+GNI
Sbjct: 241 VIRNTKGEEVRCQYVVTCAGLYSDRISELSGCNPNPRIVPFRGDYLVLKPEKRYLVKGNI 300
Query: 298 YPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRL 357
YPVPD FPFLGVHFTPRMDG++WLGPNA+LAFK+EGYR DFS R++ + G +L
Sbjct: 301 YPVPDSRFPFLGVHFTPRMDGNIWLGPNAILAFKREGYRPFDFSARDIMDIIIKSGLIKL 360
Query: 358 GLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDF 416
+ YG EM + F S V L+++I EI D+ RGP+GVRAQAL G+L++DF
Sbjct: 361 VFQNFSYGVNEMYKACFLSATVKHLQKFIPEITISDVLRGPAGVRAQALDRDGNLIEDF 419
Score = 35.8 bits (81), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 417 GVKAIHSPHTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESF---KENP 462
G+ AI P+TGIVD+ V ++F E GG + N +VE +E+P
Sbjct: 181 GLMAIDCPYTGIVDYRQVAFSFAKDFQEAGGSVLTNFEVEDIEMARESP 229
>sp|Q9H9P8|L2HDH_HUMAN L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Homo sapiens
GN=L2HGDH PE=1 SV=3
Length = 463
Score = 369 bits (948), Expect = e-101, Method: Compositional matrix adjust.
Identities = 195/379 (51%), Positives = 258/379 (68%), Gaps = 12/379 (3%)
Query: 50 SSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAG 109
S S S + +D+V+VGGGIVG+A+AR L L +P + I ++EKEK+L +HQTGHNSGV+H+G
Sbjct: 41 SRSASTSSFDIVIVGGGIVGLASARALILRHPSLSIGVLEKEKDLAVHQTGHNSGVIHSG 100
Query: 110 IYYKPGTLKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVAL-NEQLEPLHDLYERSIQNN 168
IYYKP +LKAKLCV+G L YEY ++ I YK+CGKLIVA+ E++ L LYE+ +QN
Sbjct: 101 IYYKPESLKAKLCVQGAALLYEYCQQKGISYKQCGKLIVAVEQEEIPRLQALYEKGLQNG 160
Query: 169 VKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQV- 227
V +RL+ E+IK EPYC+G+ AI P+TGIVD+ V ++F E GG + N +V
Sbjct: 161 VPGLRLIQQEDIKKKEPYCRGLMAIDCPHTGIVDYRQVALSFAQDFQEAGGSVLTNFEVK 220
Query: 228 --ESFKENPES--------VTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVP 277
E KE+P + I +G+ + Y + CAGL +D ++ SGC+ +P IVP
Sbjct: 221 GIEMAKESPSRSIDGMQYPIVIKNTKGEEIRCQYVVTCAGLYSDRISELSGCTPDPRIVP 280
Query: 278 FRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRW 337
FRG+YLLL P K +LV+GNIYPVPD FPFLGVHFTPRMDGS+WLGPNAVLAFK+EGYR
Sbjct: 281 FRGDYLLLKPEKCYLVKGNIYPVPDSRFPFLGVHFTPRMDGSIWLGPNAVLAFKREGYRP 340
Query: 338 RDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRG 397
DFS ++ + G +L + YG EM + F V L+++I EI DI RG
Sbjct: 341 FDFSATDVMDIIINSGLIKLASQNFSYGVTEMYKACFLGATVKYLQKFIPEITISDILRG 400
Query: 398 PSGVRAQALSSSGDLVDDF 416
P+GVRAQAL G+LV+DF
Sbjct: 401 PAGVRAQALDRDGNLVEDF 419
Score = 39.3 bits (90), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 417 GVKAIHSPHTGIVDWGLVTRVMGEEFCELGGEIRLNQQV---ESFKENPEM-VDSMN 469
G+ AI PHTGIVD+ V ++F E GG + N +V E KE+P +D M
Sbjct: 181 GLMAIDCPHTGIVDYRQVALSFAQDFQEAGGSVLTNFEVKGIEMAKESPSRSIDGMQ 237
>sp|Q91YP0|L2HDH_MOUSE L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Mus musculus
GN=L2hgdh PE=2 SV=1
Length = 464
Score = 367 bits (943), Expect = e-101, Method: Compositional matrix adjust.
Identities = 181/359 (50%), Positives = 243/359 (67%), Gaps = 12/359 (3%)
Query: 70 VATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLA 129
+A+AR L L +P + I +VEKEK+L +HQTGHNSGV+H+GIYYKP +LKAKLCVEG L
Sbjct: 62 LASARTLILKHPGLSIGVVEKEKDLALHQTGHNSGVIHSGIYYKPESLKAKLCVEGAALI 121
Query: 130 YEYFDKRNIPYKKCGKLIVAL-NEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCK 188
YEY + + IPY++CGKLIVA+ E++ L LYER +QN V+ +RL+ E+IK EPYC+
Sbjct: 122 YEYCNLKGIPYRQCGKLIVAVEQEEIPRLQALYERGLQNGVEGLRLIQQEDIKKKEPYCR 181
Query: 189 GVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESF---KENPES--------V 237
G+ AI P TGIV++ V ++F E GG I + +V+ KEN +
Sbjct: 182 GLMAIDCPYTGIVNYQQVALSFAQDFQEAGGSILRDFEVKGIEIAKENSSRSKDGMNYPI 241
Query: 238 TISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNI 297
+ +G + Y + CAGL +D ++ SGC+ +P IVPFRG+YL+L P K +LV+GNI
Sbjct: 242 AVKNSKGKEIRCRYVVTCAGLYSDRISELSGCNPDPQIVPFRGDYLVLKPEKGYLVKGNI 301
Query: 298 YPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRL 357
YPVPD FPFLGVHFTPR+DG++WLGPNAVLAFK+EGYR DF R++ + GF L
Sbjct: 302 YPVPDSRFPFLGVHFTPRLDGTIWLGPNAVLAFKREGYRPFDFDARDVMEVILKSGFINL 361
Query: 358 GLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDF 416
++ YG EM + F S V L+++I EI D+ RGP+GVRAQAL G+LV+DF
Sbjct: 362 VFQHFSYGVNEMYKACFLSETVKHLQKFIPEITISDVLRGPAGVRAQALDRDGNLVEDF 420
>sp|Q55GI5|L2HDH_DICDI L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Dictyostelium
discoideum GN=l2hgdh PE=3 SV=1
Length = 446
Score = 340 bits (872), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 169/400 (42%), Positives = 258/400 (64%), Gaps = 17/400 (4%)
Query: 34 KMKTCLVEKEKEFFSMSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKE 93
K + +++ K F + +YDV +VGGGIVG+AT REL PK+KI ++EKE E
Sbjct: 2 KNSSSMLKGVKSFIGSGIYTNKPIYDVAIVGGGIVGLATGRELLKRNPKLKIVILEKENE 61
Query: 94 LGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALN-E 152
+ HQ+ HNSGV+H GIYYKPG+L+AKLC +G L Y+Y ++ I Y+ CGKLIVA E
Sbjct: 62 IAPHQSSHNSGVIHCGIYYKPGSLRAKLCTKGSKLMYDYCNENQINYENCGKLIVATKKE 121
Query: 153 QLEPLHDLYERSIQNNVKDVRLV-SAEEIKTIEPYCKG-VKAIHSPNTGIVDWGLVTRVM 210
+ + L LY+R I+N V +++L+ S E++ +IEP+ G ++AIH+P+TGI+D+ V++
Sbjct: 122 EFQQLEQLYKRGIENGVPNIKLLESKEQLLSIEPFINGGLRAIHTPSTGIIDYKEVSKSF 181
Query: 211 GEEFCELGG-----EIRLNQQVESFKENPESVTISTKQGD---------HLESSYALVCA 256
G + E G EI+LN ++FK N + GD + + Y++VC
Sbjct: 182 GNDITEKFGKDSKSEIKLNFNAKNFKYNSNDKLLLISTGDDDDDEEQQQSILTKYSIVCG 241
Query: 257 GLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRM 316
G+ +D +A + + EP+IVPFRG +L P +HL++GN+YP+P+ +FPFLGVHFT R+
Sbjct: 242 GMNSDRIAKVAYGNDEPSIVPFRGSFLQFKPEFRHLIKGNVYPLPNASFPFLGVHFTKRI 301
Query: 317 DGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPS 376
+G VWLGPNAVL+F +EGY++ DF++ + ++ PG ++L K+ +YG E+ +
Sbjct: 302 NGEVWLGPNAVLSFDREGYKFTDFNLHDTIDLIKNPGLFKLAKKHWKYGLGELYRDFNKD 361
Query: 377 MRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDF 416
+ LK Y+ I ++ G SGVR+QA+S SGDL++DF
Sbjct: 362 HFIQLLKPYMPNITVDMLEYGGSGVRSQAISKSGDLIEDF 401
Score = 41.2 bits (95), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 5/50 (10%)
Query: 417 GVKAIHSPHTGIVDWGLVTRVMGEEFCELGG-----EIRLNQQVESFKEN 461
G++AIH+P TGI+D+ V++ G + E G EI+LN ++FK N
Sbjct: 160 GLRAIHTPSTGIIDYKEVSKSFGNDITEKFGKDSKSEIKLNFNAKNFKYN 209
>sp|Q5R9N7|L2HDH_PONAB L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Pongo abelii
GN=L2HGDH PE=2 SV=1
Length = 419
Score = 326 bits (835), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 179/379 (47%), Positives = 237/379 (62%), Gaps = 56/379 (14%)
Query: 50 SSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAG 109
S S S + +D+V+VGGGIVG+A+AR L L +P + I ++EKEK+L +HQTGHNSGV+H+G
Sbjct: 41 SRSASTSSFDIVIVGGGIVGLASARALILRHPSLSIGVLEKEKDLAVHQTGHNSGVIHSG 100
Query: 110 IYYKPGTLKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVAL-NEQLEPLHDLYERSIQNN 168
IYYKP +LKAKLCV+G L YEY ++ I YK+CGKLIVA+ E++ L LYER +QN
Sbjct: 101 IYYKPESLKAKLCVQGAALLYEYCQQKGISYKQCGKLIVAVEQEEIPRLQALYERGLQNG 160
Query: 169 VKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVE 228
V+ +RL+ ++IK EPYC+G+ AI P+TGIVD+ V ++F + GG + N +V+
Sbjct: 161 VQGLRLIQQDDIKKKEPYCRGLMAIDCPHTGIVDYRQVALSFAQDFQDAGGSVLTNFEVK 220
Query: 229 SFKENPES-----------VTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVP 277
+ ES + I +G+ + Y + CAGL +D ++ SGCS +P IV
Sbjct: 221 DIEMAKESLSRSIDGMQYPIVIKNIKGEEIRCQYVVTCAGLYSDRISELSGCSPDPRIVS 280
Query: 278 FRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRW 337
FRG+YLLL P K +LV+GNIYPVPD FPFLGVHFT RMDGS+WLGPNAVLAFK+EGYR
Sbjct: 281 FRGDYLLLKPEKCYLVKGNIYPVPDSRFPFLGVHFTLRMDGSIWLGPNAVLAFKREGYRP 340
Query: 338 RDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRG 397
DFS ++ + I RG
Sbjct: 341 FDFSATDVMDII--------------------------------------------INRG 356
Query: 398 PSGVRAQALSSSGDLVDDF 416
P+GVRAQAL G+LVDDF
Sbjct: 357 PAGVRAQALDRDGNLVDDF 375
Score = 36.2 bits (82), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 417 GVKAIHSPHTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPE 463
G+ AI PHTGIVD+ V ++F + GG + N +V+ + E
Sbjct: 181 GLMAIDCPHTGIVDYRQVALSFAQDFQDAGGSVLTNFEVKDIEMAKE 227
>sp|P37339|LHGO_ECOLI L-2-hydroxyglutarate oxidase LhgO OS=Escherichia coli (strain K12)
GN=lhgO PE=1 SV=3
Length = 422
Score = 282 bits (721), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 158/363 (43%), Positives = 219/363 (60%), Gaps = 6/363 (1%)
Query: 57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGT 116
+YD V++GGGI+G++TA +L YP +I L+EKE HQTGHNSGV+HAG+YY PG+
Sbjct: 1 MYDFVIIGGGIIGMSTAMQLIDVYPDARIALLEKESAPACHQTGHNSGVIHAGVYYTPGS 60
Query: 117 LKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLV 175
LKA+ C+ G + D+ I Y CGK++VA ++ ++E + L+ER+ N ++ +
Sbjct: 61 LKAQFCLAGNRATKAFCDQNGIRYDNCGKMLVATSDLEMERMRALWERTAANGIER-EWL 119
Query: 176 SAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPE 235
+A+E++ EP G+ I P++GIV + VT M + F GGEI N +V E+
Sbjct: 120 NADELREREPNITGLGGIFVPSSGIVSYRDVTAAMAKIFQSRGGEIIYNAEVSGLNEHKN 179
Query: 236 SVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPA--IVPFRGEYLLLNPAKQHLV 293
V I T+QG E+S + C+GL AD + G LEP I PFRGEY L P +V
Sbjct: 180 GVVIRTRQGGEYEASTLISCSGLMADRLVKMLG--LEPGFIICPFRGEYFRLAPEHNQIV 237
Query: 294 RGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPG 353
IYP+PDP PFLGVH T +DGSV +GPNAVLAFK+EGYR RDFS + L G
Sbjct: 238 NHLIYPIPDPAMPFLGVHLTRMIDGSVTVGPNAVLAFKREGYRKRDFSFSDTLEILGSSG 297
Query: 354 FWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLV 413
R+ + R G EM S S + +++Y + D+Q P+GVRAQA+S G L+
Sbjct: 298 IRRVLQNHLRSGLGEMKNSLCKSGYLRLVQKYCPRLSLSDLQPWPAGVRAQAVSPDGKLI 357
Query: 414 DDF 416
DDF
Sbjct: 358 DDF 360
>sp|P75063|Y051_MYCPN Uncharacterized protein MG039 homolog OS=Mycoplasma pneumoniae
(strain ATCC 29342 / M129) GN=MPN_051 PE=4 SV=1
Length = 384
Score = 99.0 bits (245), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 139/289 (48%), Gaps = 16/289 (5%)
Query: 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLK 118
DV++VGGG++G ATA EL + K+K+ LVEK L + NSGV+H GI P L
Sbjct: 5 DVLIVGGGVIGCATAYEL--SQYKLKVTLVEKHHYLAQETSHANSGVIHTGIDPNPHKLT 62
Query: 119 AKLCVEGMNLAYE-YFDKRNIPYKKCGKLIVALNE-QLEPLHDLYERSIQN--NVKDVRL 174
AK + G L YF + P +K LIVA NE + E L L +R I N N++D+++
Sbjct: 63 AKYNILGKKLWLNTYFKRLGFPRQKIRTLIVAFNEMEREQLEVLKQRGIANQINLEDIQM 122
Query: 175 VSAEEIKTIEPYCKG--VKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKE 232
+S EE +EPY V + + +D L ++ + + +I N +V + +
Sbjct: 123 LSKEETLKLEPYVNPEIVAGLKIEGSWAIDPVLASKCLALAAQQNKVQICTNTEVTNISK 182
Query: 233 NPES---VTISTKQGDHLESSYALVCAGLQADEMA-LKSGCSLEPAIVPFRGEYLLLNPA 288
+ V + + + + AG AD +A L E RG+Y+++
Sbjct: 183 QVDGTYLVWTNNETTPSFKVKKIIDAAGHYADYLAHLAKADDFEQTT--RRGQYVVVTNQ 240
Query: 289 KQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRW 337
+ + ++ VP + GV +P +DG+ +GP A+ KE R+
Sbjct: 241 GELHLNSMVFMVPTIHGK--GVIVSPMLDGNFLVGPTALDGVDKEATRY 287
>sp|P47285|Y039_MYCGE Uncharacterized protein MG039 OS=Mycoplasma genitalium (strain ATCC
33530 / G-37 / NCTC 10195) GN=MG039 PE=4 SV=1
Length = 384
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 142/291 (48%), Gaps = 14/291 (4%)
Query: 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLK 118
DV++VGGG++G + A EL + K+K+ L+EK LG + NSGV+H+GI P L
Sbjct: 5 DVLIVGGGVIGTSCAYEL--SQYKLKVALLEKNAFLGCETSQANSGVIHSGIDPNPNKLT 62
Query: 119 AKLCVEGMNLAYE-YFDKRNIPYKKCGKLIVAL-NEQLEPLHDLYERSIQNN--VKDVRL 174
AK + G + E +F K P KK LIVA NE+ L+ L ER I+N+ V+++++
Sbjct: 63 AKYNILGRKIWIEDWFKKLIFPRKKIATLIVAFNNEEKLQLNLLKERGIKNSIPVENIQI 122
Query: 175 VSAEEIKTIEPYCKG--VKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKE 232
+ ++ EP+ V ++ + ++D + T+ + + I N++V +
Sbjct: 123 LDQQQTLLQEPFINPNVVASLKVEGSWLIDPLIATKCLALASLQNNVAIYSNKKVTKIEI 182
Query: 233 NPES---VTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAK 289
+ + V I+ + ++ + AG AD +A + +G+YL+L
Sbjct: 183 DSDDDFLVFINNETTPQFKTKKLIDAAGHYADWLAETTQVD-NFKQTTRKGQYLVLKNQN 241
Query: 290 QHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDF 340
+ I+ VP + GV +DG++ +GPNAV +K R D
Sbjct: 242 NLKINTIIFMVPTIHGK--GVVVAEMLDGNILVGPNAVEGIEKNKTRSIDL 290
>sp|O24913|MQO_HELPY Malate:quinone oxidoreductase OS=Helicobacter pylori (strain ATCC
700392 / 26695) GN=mqo PE=1 SV=1
Length = 450
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 123/293 (41%), Gaps = 29/293 (9%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGH--NSGVVHAG---IYY 112
+D V++GGG+ G AT L ++ +VEK +L + NS +H G Y
Sbjct: 5 FDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIETNY 64
Query: 113 KPGTLKAKLCVEGMNLAYEYFDK--RNIPYKKCGKLIVAL-NEQLEPLHDLYERSIQNNV 169
P K K+ + +K +N + K+ + + +E+ E + YE S +
Sbjct: 65 TPEKAK-KVRLSAYKTRQYALNKGLQNEVIFETQKMAIGVGDEECEFMKKRYE-SFKEIF 122
Query: 170 KDVRLVSAEEIKTIEP-YCKGVKAIHSPNTGI-----VDWGLVTRV-MGEEFCELG---- 218
+ ++IK +EP G I I DW + + E F E
Sbjct: 123 VGLEEFDKQKIKELEPNVILGANGIDRHENIIGHGYRKDWSTMNFAKLSENFVEEALKLK 182
Query: 219 --GEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIV 276
++ LN +V+ ++ ++ + ++ + + + + LV AG A +A G L+ +
Sbjct: 183 PNNQVFLNFKVKKIEKRNDTYAVISEDAEEVYAKFVLVNAGSYALPLAQSMGYGLDLGCL 242
Query: 277 PFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPR--MDGSVWLGPNAV 327
P G + + L+RG +Y V +P PF VH P + G +GP A+
Sbjct: 243 PVAGSFYFV----PDLLRGKVYTVQNPKLPFAAVHGDPDAVIKGKTRIGPTAL 291
>sp|Q9ZMY5|MQO_HELPJ Malate:quinone oxidoreductase OS=Helicobacter pylori (strain J99)
GN=mqo PE=3 SV=1
Length = 450
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 123/293 (41%), Gaps = 29/293 (9%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGH--NSGVVHAG---IYY 112
+D V++GGG+ G AT L ++ +VEK +L + NS +H G Y
Sbjct: 5 FDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIETNY 64
Query: 113 KPGTLKAKLCVEGMNLAYEYFDK--RNIPYKKCGKLIVAL-NEQLEPLHDLYERSIQNNV 169
P K K+ + +K +N + K+ + + +E+ E + YE S +
Sbjct: 65 TPEKAK-KVRLSAYKTRQYALNKGLQNEVIFETQKMAIGVGDEECEFMKKRYE-SFKEIF 122
Query: 170 KDVRLVSAEEIKTIEP-YCKGVKAIHSPNTGI-----VDWGLVTRV-MGEEFCELG---- 218
+ ++IK +EP G I I DW + + E F E
Sbjct: 123 VGLEEFDKQKIKELEPNVILGANGIDRHENIIGHGYRKDWSTMNFAKLSENFVEEALKLK 182
Query: 219 --GEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIV 276
++ LN +V+ ++ ++ + ++ + + + + LV AG A +A G L+ +
Sbjct: 183 PNNQVFLNFKVKKIEKRNDTYAVISEDAEEVYAKFVLVNAGSYALPLAQSMGYGLDLGCL 242
Query: 277 PFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPR--MDGSVWLGPNAV 327
P G + + L+RG +Y V +P PF VH P + G +GP A+
Sbjct: 243 PVAGSFYFV----PDLLRGKVYTVQNPKLPFAAVHGDPDAVIKGKTRIGPTAL 291
>sp|Q1CV68|MQO_HELPH Probable malate:quinone oxidoreductase OS=Helicobacter pylori
(strain HPAG1) GN=mqo PE=3 SV=1
Length = 450
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 123/293 (41%), Gaps = 29/293 (9%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGH--NSGVVHAG---IYY 112
+D V++GGG+ G AT L ++ +VEK +L + NS +H G Y
Sbjct: 5 FDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIETNY 64
Query: 113 KPGTLKAKLCVEGMNLAYEYFDK--RNIPYKKCGKLIVAL-NEQLEPLHDLYERSIQNNV 169
P K K+ + +K +N + K+ + + +E+ E + YE S +
Sbjct: 65 TPEKAK-KVRLSAYKTRQYALNKGLQNEVIFETQKMAIGVGDEECEFMKKRYE-SFKEIF 122
Query: 170 KDVRLVSAEEIKTIEP-YCKGVKAIHSPNTGI-----VDWGLVTRV-MGEEFCELG---- 218
+ ++IK +EP G I I DW + + E F E
Sbjct: 123 VGLEEFDKQKIKELEPNVILGANGIDRHENIIGHGYQKDWSTMNFAKLSENFVEEALKLK 182
Query: 219 --GEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIV 276
++ LN +V+ ++ ++ + ++ + + + + LV AG A +A G L+ +
Sbjct: 183 PNNQVFLNFKVKKIEKRNDTYAVISEDAEEVYAKFVLVNAGSYALPLAQSMGYGLDLGCL 242
Query: 277 PFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPR--MDGSVWLGPNAV 327
P G + + L+RG +Y V +P PF VH P + G +GP A+
Sbjct: 243 PVAGSFYFV----PDLLRGKVYTVQNPKLPFAAVHGDPDAVIKGKTRIGPTAL 291
>sp|Q17VT7|MQO_HELAH Probable malate:quinone oxidoreductase OS=Helicobacter acinonychis
(strain Sheeba) GN=mqo PE=3 SV=1
Length = 450
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/293 (23%), Positives = 123/293 (41%), Gaps = 29/293 (9%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG--HNSGVVHAG---IYY 112
+D V++GGG+ G AT L ++ +VEK +L + NS +H G Y
Sbjct: 5 FDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIETNY 64
Query: 113 KPGTLKAKLCVEGMNLAYEYFDK--RNIPYKKCGKLIVAL-NEQLEPLHDLYERSIQNNV 169
P K K+ + +K +N + K+ + + +E+ E + YE S +
Sbjct: 65 TPEKAK-KVRLSAYKTRQYALNKGLQNKAIFETQKMAIGVGDEECEFMKKRYE-SFKEIF 122
Query: 170 KDVRLVSAEEIKTIEP-YCKGVKAIHSPNTGI-----VDWGLVTRV-MGEEFCELG---- 218
+ + IK +EP G I + I DW + + E F E
Sbjct: 123 VGLEEFDKQTIKELEPNVILGASGIDRHESIIGHGFRKDWSTMNYAKLSENFVEEALKLK 182
Query: 219 --GEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIV 276
++ LN +V+ ++ ++ + ++ + + + + LV AG A +A G L+ +
Sbjct: 183 PNNQVFLNFKVKKIEKRNDTYALISEDAEEVYAKFVLVNAGSYALPLAQSMGYGLDLGCL 242
Query: 277 PFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPR--MDGSVWLGPNAV 327
P G + + L++G +Y V +P PF VH P + G +GP A+
Sbjct: 243 PVAGSFYFV----PDLLKGKVYTVQNPKLPFAAVHGDPDAIIKGKTRIGPTAL 291
>sp|B6JPI8|MQO_HELP2 Probable malate:quinone oxidoreductase OS=Helicobacter pylori
(strain P12) GN=mqo PE=3 SV=1
Length = 450
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 126/294 (42%), Gaps = 31/294 (10%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG--HNSGVVHAG---IYY 112
+D V++GGG+ G AT L ++ +VEK +L + NS +H G Y
Sbjct: 5 FDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIETNY 64
Query: 113 KPGTLKAKLCVEGMNLAYEYFDK--RNIPYKKCGKLIVAL-NEQLEPLHDLYERSIQNNV 169
P K K+ + +K +N + K+ + + +E+ E + YE S +
Sbjct: 65 TPEKAK-KVRLSAYKTRQYALNKGLQNEVIFETQKMAIGVGDEECEFMKKRYE-SFKEIF 122
Query: 170 KDVRLVSAEEIKTIEP-YCKGVKAIHSPNTGIV------DWGLVTRV-MGEEFCELGGEI 221
+ ++IK +EP G I + IV DW + + E F E ++
Sbjct: 123 VGLEEFDKQKIKELEPNVILGANGIDR-HENIVGHGYQKDWSTMNFAKLSENFVEEALKL 181
Query: 222 R------LNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAI 275
R LN +V+ ++ ++ + ++ + + + + LV AG A +A G L+
Sbjct: 182 RPNNQVFLNFKVKKIEKRNDTYAVISEDAEEVYAKFVLVNAGSYALPLAQSMGYGLDLGC 241
Query: 276 VPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPR--MDGSVWLGPNAV 327
+P G + + L++G +Y V +P PF VH P + G +GP A+
Sbjct: 242 LPVAGSFYFV----PDLLKGKVYTVQNPKLPFAAVHGDPDAVIKGKTRIGPTAL 291
>sp|P56954|MQO_CAMJE Probable malate:quinone oxidoreductase OS=Campylobacter jejuni
subsp. jejuni serotype O:2 (strain NCTC 11168) GN=mqo
PE=3 SV=1
Length = 448
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 101/451 (22%), Positives = 174/451 (38%), Gaps = 80/451 (17%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMK-ICLVEKEKELGMHQT--GHNSGVVHAGIYYKP 114
+DV+V+G GI G A EL Y +K I L+EK + NS +H G
Sbjct: 6 FDVLVIGAGISGAALFYELA-RYTNIKNIALIEKYNTAATLNSKGTSNSQTIHCGDIETN 64
Query: 115 GTL-KAKLCVEGMNLAYEY---FDKRNIPYKKCGKLIVA--------LNEQLEPLHDLYE 162
TL KA+ ++ +Y + +N K+ +A + ++ E +LY
Sbjct: 65 YTLEKARKVKRTADMIVKYGLMQNAQNNFMFSHQKMALAVGDIECDYMKKRYEEFKELYP 124
Query: 163 RSIQNNVKDVRLVSAEEIKTIEPY------CKGVKAIHSPNTGI--------VDWGLVTR 208
++ +IK IEP C + + G+ VD+G ++
Sbjct: 125 Y--------IKFFDKAKIKQIEPKVVLGEDCNQDRPENICAMGVESGEVFTTVDFGKMSI 176
Query: 209 VMGEEFCELGGE--IRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALK 266
+ E+ + + NQ++ ++ + + T + +V AG + +A K
Sbjct: 177 NLIEQAQKQNKNTFVAFNQEIIHIEKKDDIFILKTSNHQEYHAKSVVVNAGAHSLYLAHK 236
Query: 267 SGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRM--DGSVWLGP 324
++ + P G + L KQ L+ G +Y V +P PF +H P + D + GP
Sbjct: 237 MNLGMDKSCWPVAGSFYL---TKQKLLNGKVYMVQNPKLPFAALHGDPDLLADMNTRFGP 293
Query: 325 NAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWF---------- 374
A++ K E Y SV E F L+ + LK T K+ + +
Sbjct: 294 TALVIPKLERYHGLK-SVPEFFEALKLD---KTVLKVTFNMFKDATIRNYIFYNYLFELP 349
Query: 375 ---PSMRVNELKQYIEEIEAGDI--QRGPSGVRAQALSSS--------GDLVDDFGVKAI 421
S+ V + K+ + ++A DI +G GVR Q + + + + G+
Sbjct: 350 FVDKSLFVKDAKKIVPSLKASDIYYAKGFGGVRPQVIDKTKGELMLGEASITETPGIIFN 409
Query: 422 HSPHTGIV--------DWGLVTRVMGEEFCE 444
+P G D LV +G EF E
Sbjct: 410 MTPSPGATSCLGNAERDAKLVCNYLGMEFNE 440
>sp|Q52671|SOXB_RHOCB Sarcosine oxidase subunit beta OS=Rhodobacter capsulatus (strain
ATCC BAA-309 / NBRC 16581 / SB1003) GN=soxB PE=3 SV=2
Length = 414
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 101/235 (42%), Gaps = 44/235 (18%)
Query: 48 SMSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVH 107
+ +S + YDV+VVG G G+ATA L + + ++EK LG TG N+ ++
Sbjct: 23 AWASPEPKKRYDVIVVGAGGHGLATAYYLGKVHGIKNVAIIEK-GWLGGGNTGRNTTIIR 81
Query: 108 AGIYYKPGTL---KAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNEQLEPLHDL--YE 162
+ P KA+ EG++ Y N+ + G L++A +E H++ Y+
Sbjct: 82 SNYLQDPSAAIYEKARSLYEGLSQDLNY----NVMFSPRGLLMLAQSE-----HEMRGYK 132
Query: 163 RSI-QNNVKDV--RLVSAEEIKTIEPYC----------------KGVKAIHSPNTGIVDW 203
R++ NN+++V R + +E+K + P KG A H V W
Sbjct: 133 RTVYANNLQNVETRWIEPKEVKKLVPILNIAGPRYPVLGALLQEKGGTARHDA----VAW 188
Query: 204 GLVTRVMGEEFCELGGEIRLNQQVESFK-ENPESVTISTKQGDHLESSYALVCAG 257
G ++G ++ N +V + E V + T +G A+V AG
Sbjct: 189 GYA-----RACSDMGMDLLQNTEVTGVRTEGGRVVGVDTSRGSIDCGKLAIVVAG 238
>sp|P32318|THI4_YEAST Thiamine thiazole synthase OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=THI4 PE=1 SV=1
Length = 326
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 73/162 (45%), Gaps = 22/162 (13%)
Query: 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPG 115
A+ DV++VG G G++ A + N P +K+C++E S V G + G
Sbjct: 64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIE-------------SSVAPGGGSWLGG 110
Query: 116 TLKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQ-NNVKDVRL 174
L + + + A+ + + IPY+ G +V + L + + + +Q NVK
Sbjct: 111 QLFSAMVMR--KPAHLFLQELEIPYEDEGDYVVVKHAALF-ISTVLSKVLQLPNVKLFNA 167
Query: 175 VSAEEIKTIEPYCKGVKAIHSPNTGIV-DWGLVTRVMGEEFC 215
E++ T P KG + G+V +W LVT+ G + C
Sbjct: 168 TCVEDLVTRPPTEKGEVTV----AGVVTNWTLVTQAHGTQCC 205
>sp|A9RHW6|THI43_PHYPA Thiamine thiazole synthase 3, chloroplastic OS=Physcomitrella
patens subsp. patens GN=THI1-3 PE=3 SV=1
Length = 357
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 78/185 (42%), Gaps = 25/185 (13%)
Query: 31 KYPKMKTCLVEKEKEFFSMSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEK 90
K+ +K +V +E M+ + A DVVVVG G G++ A EL N P +K+ +VE+
Sbjct: 66 KFAPIKESIVAREMTRRYMTDMITHADTDVVVVGAGSAGLSCAYELSKN-PNVKVAIVEQ 124
Query: 91 EKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVAL 150
G G + G L + + V A+ + D+ +PY++ +V
Sbjct: 125 SVSPG-------------GGAWLGGQLFSAMIVR--KPAHRFLDEIEVPYEEMENYVVIK 169
Query: 151 NEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVM 210
+ L + + + NVK V+AE++ GV + +W LV +
Sbjct: 170 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIIRGDRVSGV---------VTNWALVAQNH 220
Query: 211 GEEFC 215
+ C
Sbjct: 221 NTQSC 225
>sp|A9RHX1|THI41_PHYPA Thiamine thiazole synthase 1, chloroplastic OS=Physcomitrella
patens subsp. patens GN=THI1-1 PE=3 SV=1
Length = 357
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 78/185 (42%), Gaps = 25/185 (13%)
Query: 31 KYPKMKTCLVEKEKEFFSMSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEK 90
K+ +K +V +E M+ + A DVVVVG G G++ A EL N P +K+ +VE+
Sbjct: 66 KFAPIKESIVAREMTRRYMTDMITHADTDVVVVGAGSAGLSCAYELSKN-PNVKVAIVEQ 124
Query: 91 EKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVAL 150
G G + G L + + V A+ + D+ +PY++ +V
Sbjct: 125 SVSPG-------------GGAWLGGQLFSAMIVR--KPAHRFLDEIEVPYEEMENYVVIK 169
Query: 151 NEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVM 210
+ L + + + NVK V+AE++ GV + +W LV +
Sbjct: 170 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIIRGDRVSGV---------VTNWALVAQNH 220
Query: 211 GEEFC 215
+ C
Sbjct: 221 NTQSC 225
>sp|B2HJU4|MQO_MYCMM Probable malate:quinone oxidoreductase OS=Mycobacterium marinum
(strain ATCC BAA-535 / M) GN=mqo PE=3 SV=1
Length = 493
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 76/327 (23%), Positives = 123/327 (37%), Gaps = 48/327 (14%)
Query: 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG--HNSGVVHAGI--- 110
A DVV+VG GI+ L+ P I L+E+ + +G +N+G H+ +
Sbjct: 5 ARTDVVLVGAGIMSATLGAMLRRLEPDWSITLIERLDAVAAESSGPWNNAGTGHSALCEL 64
Query: 111 YYKPGTLKAKLCVEGMNLAYEYFD--KRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNN 168
Y P + + E F ++ Y ++ + L PL +
Sbjct: 65 NYTPQRPDGSIDISKAVRINEEFQVTRQFWAYAAENGILNDVRSFLNPLPHVSFVHGAER 124
Query: 169 VKDVR-----------LVSAEEIKTIEPYCK-----GVKAIHSPNTGI--------VDWG 204
V +R AE I + + + K + S + VD+G
Sbjct: 125 VHQLRRRRDALAGNPLFAGAEWIDDPDEFARRLPLMAAKRVFSEPIALNWAADGTDVDFG 184
Query: 205 LVTRVMGEEFCELGGEIRL-NQQVESFKENPES------VTISTKQGDHLESSYALVCAG 257
++R + +C G + L Q+V + P+ V T + L++ + V AG
Sbjct: 185 ALSRQL-IGYCVRNGAVALFGQEVRNLVRQPDGGWMLTVVNRRTGEKRKLKTKFVFVGAG 243
Query: 258 LQADEMALKSGCSLEPAIV--PFRGEYL-LLNPAKQHLVRGNIYPVPDPNFPFLG-VHFT 313
A + +SG P G +L NPA R +Y VP P P LG +H
Sbjct: 244 GNALSLLQRSGIKEINGFAGFPIGGRFLRTANPALTAAHRAKVYGVPAPGAPPLGALHLD 303
Query: 314 PR-MDGSVWL--GPNAVLA--FKKEGY 335
R ++G WL GP A + F K G+
Sbjct: 304 LRYVNGKSWLMFGPFAGWSPKFLKRGH 330
>sp|A9SME1|THI42_PHYPA Thiamine thiazole synthase 2, chloroplastic OS=Physcomitrella
patens subsp. patens GN=THI1-2 PE=3 SV=1
Length = 356
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 78/185 (42%), Gaps = 25/185 (13%)
Query: 31 KYPKMKTCLVEKEKEFFSMSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEK 90
K+ +K +V +E M+ + A DVVVVG G G++ A EL N P +K+ ++E+
Sbjct: 65 KFEPIKESIVAREMTRRYMTDMITHADTDVVVVGAGSAGLSCAYELSKN-PNVKVAIIEQ 123
Query: 91 EKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVAL 150
G G + G L + + V A+ + D+ +PY++ +V
Sbjct: 124 SVSPG-------------GGAWLGGQLFSAMVVR--KPAHRFLDEIEVPYEELENYVVIK 168
Query: 151 NEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVM 210
+ L + + + NVK V+AE++ GV + +W LV +
Sbjct: 169 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIIRGDRVSGV---------VTNWALVAQNH 219
Query: 211 GEEFC 215
+ C
Sbjct: 220 NTQSC 224
>sp|A9SMC8|THI44_PHYPA Thiamine thiazole synthase 4, chloroplastic OS=Physcomitrella
patens subsp. patens GN=THI1-4 PE=3 SV=1
Length = 343
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 78/185 (42%), Gaps = 25/185 (13%)
Query: 31 KYPKMKTCLVEKEKEFFSMSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEK 90
K+ +K +V +E M+ + A DVVVVG G G++ A EL N P +K+ ++E+
Sbjct: 52 KFEPIKESIVAREMTRRYMTEMITHADTDVVVVGAGSAGLSCAYELSKN-PNVKVAIIEQ 110
Query: 91 EKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVAL 150
G G + G L + + V A+ + D+ +PY++ +V
Sbjct: 111 SVSPG-------------GGAWLGGQLFSAMVVR--KPAHRFLDEIEVPYEELENYVVIK 155
Query: 151 NEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVM 210
+ L + + + NVK V+AE++ GV + +W LV +
Sbjct: 156 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIIRGDRVSGV---------VTNWALVAQNH 206
Query: 211 GEEFC 215
+ C
Sbjct: 207 NTQSC 211
>sp|A8J9T5|THI4_CHLRE Thiamine thiazole synthase, chloroplastic OS=Chlamydomonas
reinhardtii GN=THI1 PE=3 SV=1
Length = 357
Score = 41.6 bits (96), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 67/163 (41%), Gaps = 28/163 (17%)
Query: 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLK 118
DVV+VG G G+A A EL P +K+ L+E+ V G + G L
Sbjct: 93 DVVIVGAGSAGLACAFELGRIAPHLKVALMEQS-------------VAPGGGAWLGGQLF 139
Query: 119 AKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQN-NVKDVRLVSA 177
+ + V A+E D +PY+ G +V + L L ++N NVK +
Sbjct: 140 SAMVVR--KPAHEMLDALQVPYEDEGHYVVVRHAALL-TSTLMSHVLKNPNVKLFNATAV 196
Query: 178 EEI-----KTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFC 215
E++ + P + V + + +W LV + G + C
Sbjct: 197 EDLIVKPDPALGPGGRRVAGV------VTNWSLVAQAHGTQSC 233
>sp|P40859|MSOX_BACB0 Monomeric sarcosine oxidase OS=Bacillus sp. (strain B-0618) GN=soxA
PE=1 SV=2
Length = 390
Score = 40.8 bits (94), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 13/227 (5%)
Query: 58 YDVVVVGGGIVGVATAREL-KLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGT 116
+DV+VVG G +G+A +L K + + + G H G + HA Y G
Sbjct: 5 FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHH-GDTRIIRHA---YGEGR 60
Query: 117 LKAKLCVEGMNLAYEY-FDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLV 175
L + L YE + + + K G L+ + + + E + ++++ V L+
Sbjct: 61 EYVPLALRSQELWYELEKETHHKIFTKTGVLVFGPKGESAFVAETMEAAKEHSLT-VDLL 119
Query: 176 SAEEIKTIEPYC---KGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKE 232
+EI P + AI PN+G++ R E G ++ + +VE F
Sbjct: 120 EGDEINKRWPGITVPENYNAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDI 179
Query: 233 NPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFR 279
+P+SV I T G + + + A L S +L+ + P+R
Sbjct: 180 SPDSVKIETANGSYTADK---LIVSMGAWNSKLLSKLNLDIPLQPYR 223
>sp|Q3K8R9|MNMC_PSEPF tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Pseudomonas fluorescens (strain Pf0-1)
GN=mnmC PE=3 SV=1
Length = 659
Score = 40.0 bits (92), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 60 VVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKA 119
+V+G G+ G ATA L ++ L+E+ + +G+ GV++ + GT +
Sbjct: 264 ALVIGAGLAGCATAASLAAR--GWQVSLLERHDAVAQEASGNPQGVLYLKLSAH-GTALS 320
Query: 120 KLCVEGMNLAYEYFD--KRNIPYKKCGKLIVALNEQ 153
+L V G + +R + CG L +A NE+
Sbjct: 321 QLIVSGFGYTRRVLETLQRGTDWDDCGVLQLAFNEK 356
>sp|A3PBD7|MQO_PROM0 Probable malate:quinone oxidoreductase OS=Prochlorococcus marinus
(strain MIT 9301) GN=mqo PE=3 SV=1
Length = 498
Score = 40.0 bits (92), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 12/95 (12%)
Query: 49 MSSSQSP----ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG--HN 102
M+SS++P + +D V+VGGGI+ A + P +K ++EK G TG +N
Sbjct: 1 MTSSKNPTNDNSYFDAVLVGGGIMSSTLALLISEVLPDIKFLIIEKLNAPGSESTGAFNN 60
Query: 103 SGVVHAG---IYYKPGTLKAKLCVE---GMNLAYE 131
+G HA + Y P K L ++ +N ++E
Sbjct: 61 AGTGHAANCELNYTPLDEKGNLKIDKALSINRSFE 95
>sp|A8G3D1|MQO_PROM2 Probable malate:quinone oxidoreductase OS=Prochlorococcus marinus
(strain MIT 9215) GN=mqo PE=3 SV=1
Length = 498
Score = 40.0 bits (92), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 12/95 (12%)
Query: 49 MSSSQSP----ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG--HN 102
M+SS++P + +D V+VGGGI+ A + P +K ++EK G TG +N
Sbjct: 1 MTSSKNPTNDNSYFDAVLVGGGIMSSTLALLISEVLPDIKFLIIEKLNAPGSESTGAFNN 60
Query: 103 SGVVHAG---IYYKPGTLKAKLCVE---GMNLAYE 131
+G HA + Y P K L ++ +N ++E
Sbjct: 61 AGTGHAANCELNYTPLDEKGNLKIDKALSINRSFE 95
>sp|Q63342|M2GD_RAT Dimethylglycine dehydrogenase, mitochondrial OS=Rattus norvegicus
GN=Dmgdh PE=1 SV=1
Length = 857
Score = 40.0 bits (92), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 108/235 (45%), Gaps = 20/235 (8%)
Query: 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLK 118
+ V++GGG VGV+ A L M+ ++ ++ EL T H +G+ Y+ PG
Sbjct: 44 ETVIIGGGCVGVSLAYHLA--KAGMRDVVLLEKSELTAGSTWHAAGLT---TYFHPGINL 98
Query: 119 AKLCVEGMNLAYEYFDKRN---IPYKKCGKLIVALN-EQLEPLHDLYERSIQN-NVKDVR 173
K+ + + L YE ++ + + + G + +A E+++ Y+ + N + +
Sbjct: 99 KKIHYDSIKL-YERLEEETGQVVGFHQPGSIRLATTPERVDEFK--YQMTRTNWHATEQY 155
Query: 174 LVSAEEIKTIEPYC---KGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESF 230
++ E+I + P K + +++P G +D +T + + G ++ V S
Sbjct: 156 IIEPEKIHELFPLLNMDKILAGLYNPGDGHIDPYSLTMALATGARKYGVLLKYPAPVTSL 215
Query: 231 KENPESV-TISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLL 284
K P+ + T QG + ++ + AG A E+ G L+ ++P + +Y++
Sbjct: 216 KPRPDGTWDVETPQGS-VRANRIVNAAGFWAREVGKMIG--LDHPLIPVQHQYVV 267
>sp|F6H7K5|THI42_VITVI Thiamine thiazole synthase 2, chloroplastic OS=Vitis vinifera
GN=THI1-2 PE=3 SV=1
Length = 355
Score = 39.7 bits (91), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 76/187 (40%), Gaps = 25/187 (13%)
Query: 29 KLKYPKMKTCLVEKEKEFFSMSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLV 88
K+ +K +V +E M + A DVV+VG G G++ A EL N P +++ ++
Sbjct: 59 SFKFEPIKESIVAREMTRRYMMDMITYADTDVVIVGAGSAGLSCAYELSKN-PSIRVAII 117
Query: 89 EKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIV 148
E+ G G + G L + + V A+ + D+ I Y + +V
Sbjct: 118 EQSVSPG-------------GGAWLGGQLFSAMVVR--KPAHHFLDELGIEYDEQDNYVV 162
Query: 149 ALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTR 208
+ L + + + NVK V+AE++ E GV + +W LV+
Sbjct: 163 IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKEERVAGV---------VTNWALVSM 213
Query: 209 VMGEEFC 215
+ C
Sbjct: 214 NHDTQSC 220
>sp|Q31CB9|MQO_PROM9 Probable malate:quinone oxidoreductase OS=Prochlorococcus marinus
(strain MIT 9312) GN=mqo PE=3 SV=1
Length = 498
Score = 39.7 bits (91), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 12/95 (12%)
Query: 49 MSSSQSP----ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG--HN 102
M+SS++P + +D V+VG GI+ A + P +K ++EK K G TG +N
Sbjct: 1 MTSSKNPTNDNSYFDAVLVGAGIMSSTLALLISEVLPDIKFLIIEKLKAPGSESTGAFNN 60
Query: 103 SGVVHAG---IYYKPGTLKAKLCVE---GMNLAYE 131
+G HA + Y P K L ++ +N ++E
Sbjct: 61 AGTGHAANCELNYTPLDEKGNLKIDKALSINRSFE 95
>sp|Q9DBT9|M2GD_MOUSE Dimethylglycine dehydrogenase, mitochondrial OS=Mus musculus
GN=Dmgdh PE=1 SV=1
Length = 869
Score = 39.7 bits (91), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 107/235 (45%), Gaps = 20/235 (8%)
Query: 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLK 118
+ V++GGG VGV+ A L M+ ++ ++ EL T H +G+ Y+ PG
Sbjct: 44 ETVIIGGGCVGVSLAYHLA--KAGMRDVVLMEKSELTAGSTWHAAGLT---TYFHPGINL 98
Query: 119 AKLCVEGMNLAYEYFDKRN---IPYKKCGKLIVALNE-QLEPLHDLYERSIQN-NVKDVR 173
K+ + + L YE ++ + + + G + +A +++ Y+ + N + +
Sbjct: 99 KKIHYDSIKL-YERLEEETGQVVGFHQPGSIRLATTPVRVDEFK--YQMTRTNWHATEQY 155
Query: 174 LVSAEEIKTIEPYC---KGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESF 230
++ E+I + P K + +++P G +D +T + + G ++ V S
Sbjct: 156 IIEPEKIHELFPLLNMNKILAGLYNPGDGHIDPYSLTMALAAGARKYGALLKYPAPVTSL 215
Query: 231 KENPESV-TISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLL 284
K P+ + T QG + ++ + AG A E+ G L+ ++P + +Y++
Sbjct: 216 KPRPDGTWDVETPQGS-VRANRIVNAAGFWAREVGKMIG--LDHPLIPVQHQYVV 267
>sp|Q9UVF8|THI4_UROFA Thiamine thiazole synthase OS=Uromyces fabae GN=THI2 PE=2 SV=1
Length = 338
Score = 39.3 bits (90), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 65/160 (40%), Gaps = 17/160 (10%)
Query: 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPG 115
A+ DV++VG G G++ A L P +KI ++E G G +
Sbjct: 79 AISDVIIVGAGSAGLSCAYALGTARPDLKITILESNVAPG------------GGCWLGGQ 126
Query: 116 TLKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLV 175
+ A +C + A E+ D+ +PY+ G +V + L L + NVK
Sbjct: 127 LMSAMVCRKP---ADEFLDQVGVPYEDEGNFVVVKHAALFTSTVLSKVLAMPNVKMFNAT 183
Query: 176 SAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFC 215
+ E++ I+P C + + +W LV+ + C
Sbjct: 184 ACEDL-IIKP-CPINPGVQRIAGCVTNWTLVSLNHDHQSC 221
>sp|C4LEV7|MQO_TOLAT Probable malate:quinone oxidoreductase OS=Tolumonas auensis (strain
DSM 9187 / TA4) GN=mqo PE=3 SV=1
Length = 497
Score = 38.9 bits (89), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 89/417 (21%), Positives = 161/417 (38%), Gaps = 90/417 (21%)
Query: 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG--HNSGVVHAG---IYYK 113
DV +VGGGI+ A + P + IC++E+ ++ + +G +N+G HAG + Y
Sbjct: 7 DVTLVGGGIMSATLAMLIHRLDPALHICMIEQLPDIALESSGALNNAGTGHAGYCELNYT 66
Query: 114 PGTLKAKLCVEG---MNLAYEYFDKRNIPYKKCGKLIVALNEQLEP---LHDLYERSIQN 167
P + ++ +N A+E + + L+ A E + P ++ + S
Sbjct: 67 PHDKDGNVLIQRALEINAAFE------VSLQFWSHLVNADRENITPSSFINRVPHLSAVW 120
Query: 168 NVKDVRLVSA-----------------EEIKTI-------------EPYCKGVKAIHSPN 197
KD+ + A E+ +T+ EP + H +
Sbjct: 121 GQKDIDFLKARYTLLKSHHLFSEMKWSEDEQTLADWMPLMMKGRQAEPKLAATRVEHGAD 180
Query: 198 TGIVDWGLVTRVMGEEFCELGG-EIRLNQQVESFK-----ENPESVTISTKQG---DHLE 248
V++G +TR++ + E+ N +V + P +V + + +E
Sbjct: 181 ---VNFGALTRILVSYLQKNANFELLTNTRVVDLHRAHGAKKPWAVKVKNQNSAAKQTIE 237
Query: 249 SSYALVCAGLQADEMALKSGCSLEPAI----VPFRGEYLLLNPAKQHLVR---GNIYPVP 301
S + + AG A + SG +E A P G++L+ Q L+R +Y +
Sbjct: 238 SPFVFLGAGGVALHLLQNSG--IEEAAGYGGFPVSGQWLICQ--NQDLIRQHHAKVYSLA 293
Query: 302 DPNFPFLGV-HFTPRMDG---SVWLGPNA--VLAFKKEGYRW------RDFSVRELFSTL 349
P + V H R+ S+ GP A F K G + R +++ L
Sbjct: 294 AVGAPPMSVPHLDTRIINGKPSLLFGPYAGFTTKFLKHGSPFDLAKSVRPHNLKSLI--- 350
Query: 350 RYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQAL 406
G + T+Y KE+ + S R+ L+ +I A D Q +G R Q +
Sbjct: 351 ---GAGKNNFDLTKYLVKEVFQT--HSQRMQSLEAFIPNARAEDWQLAHAGKRVQII 402
>sp|Q8CV11|MQO_OCEIH Probable malate:quinone oxidoreductase OS=Oceanobacillus iheyensis
(strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831)
GN=mqo PE=3 SV=1
Length = 502
Score = 38.9 bits (89), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 106/234 (45%), Gaps = 33/234 (14%)
Query: 201 VDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESV------TISTKQGDHLESSYALV 254
V++G +TR++ +EF G ++ N VE K N E + ++ ++ ++ + + +
Sbjct: 182 VNFGALTRLLFQEFDHKGIDVNYNHSVEDIKRNSEGLWEVKVHDMNDEKIEYHTAKFVFI 241
Query: 255 CAGLQADEMALKSGCSLEPAI--VPFRGEYLLLNPA---KQHLVRGNIYPVPDPNFPFLG 309
AG + + K+G I P G +++ N +QH +Y P +
Sbjct: 242 GAGGGSLPLLQKTGIKESKHIGGFPVSGLFMVCNNPEVIEQH--HAKVYGKAKVGAPPMS 299
Query: 310 V-HFTPR-MDG--SVWLGPNAVLA--FKKEGYRWRDFSVRELFSTLRYPGFWRL---GLK 360
V H R +DG S+ GP A + F K G S+ +L +++ + + G+K
Sbjct: 300 VPHLDTRFIDGKKSLLFGPFAGFSPKFLKTG------SLFDLMHSVKSDNLFTMLSAGMK 353
Query: 361 ---YTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGD 411
T+Y +++++S R+ EL+++I ++ D +G R Q + + D
Sbjct: 354 ELPLTKYLIQQVVLS--NEKRMEELREFIPNAQSKDWDIVIAGQRVQVIKDTED 405
>sp|A3M361|MQO_ACIBT Probable malate:quinone oxidoreductase OS=Acinetobacter baumannii
(strain ATCC 17978 / NCDC KC 755) GN=mqo PE=3 SV=2
Length = 546
Score = 38.9 bits (89), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 88/427 (20%), Positives = 158/427 (37%), Gaps = 95/427 (22%)
Query: 49 MSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG--HNSGVV 106
+ +++ + D V+VGGGI+ P +I + E+ ++ + +N+G
Sbjct: 32 VQTAKDEPVVDAVLVGGGIMSATLGTYFTELEPNWQIRMFERLDQVAQESSNGFNNAGTG 91
Query: 107 HAGIYYKPGTLKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNE----QLEPLHDLYE 162
H+G F + N +K GK+ +A E Q E +
Sbjct: 92 HSG-----------------------FMEMNYTEEKNGKMEIAKAEKVASQFEVAKQFWS 128
Query: 163 RSIQ-----------NNVKDVRLVSAEEIKTIE---------PYCKGVKAIHSPNTGIVD 202
++ N V + V + +K +E P KG+K P I
Sbjct: 129 YQVKQGVLAEPKTFINPVPHIAFVWGDNVKFLEKRYAAMIQSPLFKGMKFTEDPAV-IKQ 187
Query: 203 WGLV-------TRVMGEEFCELGGEIR----LNQQVESFKENP----------------- 234
W + T+ + E+G ++ Q V +NP
Sbjct: 188 WAPLVMTDRDPTQKVAATRMEVGSDVNYGSITKQLVNHLNQNPNFKLQTSTEVTGISQND 247
Query: 235 -ESVTIS-----TKQGDHLESSYALVCAGLQADEMALKSGC--SLEPAIVPFRGEYLLL- 285
++ T+S T + DH+++ + + AG A ++ +G + + A P GE+L+
Sbjct: 248 DKTWTVSFKNLKTGKTDHVKTRFVFIGAGGAAVKLLQLTGLPEAKQYAGFPVGGEFLITD 307
Query: 286 NPAKQHLVRGNIYPVPDPNFPFLGV-HFTPR-MDGS--VWLGPNAVLA--FKKEGYRWRD 339
NPA +Y + P + V H R +DG V GP A + F K G +
Sbjct: 308 NPAITAQHTAKVYGRAELGAPPMSVPHIDTRYIDGKKYVLFGPFATYSNKFLKNGSQLDL 367
Query: 340 FSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPS 399
+ + L L +Y +++MS R+NEL++Y + +A D +
Sbjct: 368 LASTNKSNVLPMTTVGLENLDLVKYLVSQVMMS--DEDRLNELRKYYPDAKAEDWRLSQG 425
Query: 400 GVRAQAL 406
G R Q +
Sbjct: 426 GQRVQII 432
>sp|B2HV78|MQO_ACIBC Probable malate:quinone oxidoreductase OS=Acinetobacter baumannii
(strain ACICU) GN=mqo PE=3 SV=1
Length = 546
Score = 38.9 bits (89), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 88/427 (20%), Positives = 158/427 (37%), Gaps = 95/427 (22%)
Query: 49 MSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG--HNSGVV 106
+ +++ + D V+VGGGI+ P +I + E+ ++ + +N+G
Sbjct: 32 VQTAKDEPVVDAVLVGGGIMSATLGTYFTELEPNWQIRMFERLDQVAQESSNGFNNAGTG 91
Query: 107 HAGIYYKPGTLKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNE----QLEPLHDLYE 162
H+G F + N +K GK+ +A E Q E +
Sbjct: 92 HSG-----------------------FMEMNYTEEKNGKMEIAKAEKVASQFEVAKQFWS 128
Query: 163 RSIQ-----------NNVKDVRLVSAEEIKTIE---------PYCKGVKAIHSPNTGIVD 202
++ N V + V + +K +E P KG+K P I
Sbjct: 129 YQVKQGVLAEPKTFINPVPHIAFVWGDNVKFLEKRYAAMIQSPLFKGMKFTEDPAV-IKQ 187
Query: 203 WGLV-------TRVMGEEFCELGGEIR----LNQQVESFKENP----------------- 234
W + T+ + E+G ++ Q V +NP
Sbjct: 188 WAPLVMTDRDPTQKVAATRMEVGSDVNYGSITKQLVNHLNQNPNFKLQTSTEVTGISQND 247
Query: 235 -ESVTIS-----TKQGDHLESSYALVCAGLQADEMALKSGC--SLEPAIVPFRGEYLLL- 285
++ T+S T + DH+++ + + AG A ++ +G + + A P GE+L+
Sbjct: 248 DKTWTVSFKNLKTGKTDHVKTRFVFIGAGGAAVKLLQLTGLPEAKQYAGFPVGGEFLITD 307
Query: 286 NPAKQHLVRGNIYPVPDPNFPFLGV-HFTPR-MDGS--VWLGPNAVLA--FKKEGYRWRD 339
NPA +Y + P + V H R +DG V GP A + F K G +
Sbjct: 308 NPAITAQHTAKVYGRAELGAPPMSVPHIDTRYIDGKKYVLFGPFATYSNKFLKNGSQLDL 367
Query: 340 FSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPS 399
+ + L L +Y +++MS R+NEL++Y + +A D +
Sbjct: 368 LASTNKSNVLPMTTVGLENLDLVKYLVSQVMMS--DEDRLNELRKYYPDAKAEDWRLSQG 425
Query: 400 GVRAQAL 406
G R Q +
Sbjct: 426 GQRVQII 432
>sp|P94132|ETFD_ACIAD Probable electron transfer flavoprotein-ubiquinone oxidoreductase
OS=Acinetobacter sp. (strain ADP1) GN=etfD PE=4 SV=1
Length = 570
Score = 38.9 bits (89), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 5/45 (11%)
Query: 58 YDVVVVGGGIVGVATA---RELKL--NYPKMKICLVEKEKELGMH 97
+DVV+VG G G++ A R+L + N P + +C+VEK E+G H
Sbjct: 11 FDVVIVGAGPAGLSAAIKIRQLAIENNLPDLSVCVVEKGSEVGAH 55
>sp|B0V946|MQO_ACIBY Probable malate:quinone oxidoreductase OS=Acinetobacter baumannii
(strain AYE) GN=mqo PE=3 SV=1
Length = 546
Score = 38.5 bits (88), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 88/427 (20%), Positives = 158/427 (37%), Gaps = 95/427 (22%)
Query: 49 MSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG--HNSGVV 106
+ +++ + D V+VGGGI+ P +I + E+ ++ + +N+G
Sbjct: 32 VQTAKDEPVVDAVLVGGGIMSATLGTYFTELEPNWQIRMYERLDQVAQESSNGFNNAGTG 91
Query: 107 HAGIYYKPGTLKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNE----QLEPLHDLYE 162
H+G F + N +K GK+ +A E Q E +
Sbjct: 92 HSG-----------------------FMEMNYTEEKNGKMEIAKAEKVASQFEVAKQFWS 128
Query: 163 RSIQ-----------NNVKDVRLVSAEEIKTIE---------PYCKGVKAIHSPNTGIVD 202
++ N V + V + +K +E P KG+K P I
Sbjct: 129 YQVKQGVLAEPKTFINPVPHIAFVWGDNVKFLEKRYAAMIQSPLFKGMKFTEDPAV-IKQ 187
Query: 203 WGLV-------TRVMGEEFCELGGEIR----LNQQVESFKENP----------------- 234
W + T+ + E+G ++ Q V +NP
Sbjct: 188 WAPLVMTDRDPTQKVAATRMEVGSDVNYGSITKQLVNHLNQNPNFKLQTSTEVTGISQND 247
Query: 235 -ESVTIS-----TKQGDHLESSYALVCAGLQADEMALKSGC--SLEPAIVPFRGEYLLL- 285
++ T+S T + DH+++ + + AG A ++ +G + + A P GE+L+
Sbjct: 248 DKTWTVSFKNLKTGKTDHVKTRFVFIGAGGAAVKLLQLTGLPEAKQYAGFPVGGEFLITD 307
Query: 286 NPAKQHLVRGNIYPVPDPNFPFLGV-HFTPR-MDGS--VWLGPNAVLA--FKKEGYRWRD 339
NPA +Y + P + V H R +DG V GP A + F K G +
Sbjct: 308 NPAITAQHTAKVYGRAELGAPPMSVPHIDTRYIDGKKYVLFGPFATYSNKFLKNGSQLDL 367
Query: 340 FSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPS 399
+ + L L +Y +++MS R+NEL++Y + +A D +
Sbjct: 368 LASTNKSNVLPMTTVGLENLDLVKYLVSQVMMS--DEDRLNELRKYYPDAKAEDWRLSQG 425
Query: 400 GVRAQAL 406
G R Q +
Sbjct: 426 GQRVQII 432
>sp|B7I894|MQO_ACIB5 Probable malate:quinone oxidoreductase OS=Acinetobacter baumannii
(strain AB0057) GN=mqo PE=3 SV=1
Length = 546
Score = 38.5 bits (88), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 88/427 (20%), Positives = 158/427 (37%), Gaps = 95/427 (22%)
Query: 49 MSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG--HNSGVV 106
+ +++ + D V+VGGGI+ P +I + E+ ++ + +N+G
Sbjct: 32 VQTAKDEPVVDAVLVGGGIMSATLGTYFTELEPNWQIRMYERLDQVAQESSNGFNNAGTG 91
Query: 107 HAGIYYKPGTLKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNE----QLEPLHDLYE 162
H+G F + N +K GK+ +A E Q E +
Sbjct: 92 HSG-----------------------FMEMNYTEEKNGKMEIAKAEKVASQFEVAKQFWS 128
Query: 163 RSIQ-----------NNVKDVRLVSAEEIKTIE---------PYCKGVKAIHSPNTGIVD 202
++ N V + V + +K +E P KG+K P I
Sbjct: 129 YQVKQGVLAEPKTFINPVPHIAFVWGDNVKFLEKRYAAMIQSPLFKGMKFTEDPAV-IKQ 187
Query: 203 WGLV-------TRVMGEEFCELGGEIR----LNQQVESFKENP----------------- 234
W + T+ + E+G ++ Q V +NP
Sbjct: 188 WAPLVMTDRDPTQKVAATRMEVGSDVNYGSITKQLVNHLNQNPNFKLQTSTEVTGISQND 247
Query: 235 -ESVTIS-----TKQGDHLESSYALVCAGLQADEMALKSGC--SLEPAIVPFRGEYLLL- 285
++ T+S T + DH+++ + + AG A ++ +G + + A P GE+L+
Sbjct: 248 DKTWTVSFKNLKTGKTDHVKTRFVFIGAGGAAVKLLQLTGLPEAKQYAGFPVGGEFLITD 307
Query: 286 NPAKQHLVRGNIYPVPDPNFPFLGV-HFTPR-MDGS--VWLGPNAVLA--FKKEGYRWRD 339
NPA +Y + P + V H R +DG V GP A + F K G +
Sbjct: 308 NPAITAQHTAKVYGRAELGAPPMSVPHIDTRYIDGKKYVLFGPFATYSNKFLKNGSQLDL 367
Query: 340 FSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPS 399
+ + L L +Y +++MS R+NEL++Y + +A D +
Sbjct: 368 LASTNKSNVLPMTTVGLENLDLVKYLVSQVMMS--DEDRLNELRKYYPDAKAEDWRLSQG 425
Query: 400 GVRAQAL 406
G R Q +
Sbjct: 426 GQRVQII 432
>sp|B7GYG6|MQO_ACIB3 Probable malate:quinone oxidoreductase OS=Acinetobacter baumannii
(strain AB307-0294) GN=mqo PE=3 SV=1
Length = 546
Score = 38.5 bits (88), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 90/429 (20%), Positives = 161/429 (37%), Gaps = 99/429 (23%)
Query: 49 MSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG--HNSGVV 106
+ +++ + D V+VGGGI+ P +I + E+ ++ + +N+G
Sbjct: 32 VQTAKDEPVVDAVLVGGGIMSATLGTYFTELEPNWQIRMYERLDQVAQESSNGFNNAGTG 91
Query: 107 HAGIYYKPGTLKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNE----QLEPLHDLYE 162
H+G F + N +K GK+ +A E Q E +
Sbjct: 92 HSG-----------------------FMEMNYTEEKNGKMEIAKAEKVASQFEVAKQFWS 128
Query: 163 RSIQ-----------NNVKDVRLVSAEEIKTIE---------PYCKGVKAIHSPNTGIVD 202
++ N V + V + +K +E P KG+K P I
Sbjct: 129 YQVKQGVLAEPKTFINPVPHIAFVWGDNVKFLEKRYAAMIQSPLFKGMKFTEDPAV-IKQ 187
Query: 203 WGLV-------TRVMGEEFCELGGEIR----LNQQVESFKENP----------------- 234
W + T+ + E+G ++ Q V +NP
Sbjct: 188 WAPLVMTDRDPTQKVAATRMEVGSDVNYGSITKQLVNHLNQNPNFKLQTSTEVTGISQND 247
Query: 235 -ESVTIS-----TKQGDHLESSYALVCAGLQADEMALKSGC--SLEPAIVPFRGEYLLL- 285
++ T+S T + DH+++ + + AG A ++ +G + + A P GE+L+
Sbjct: 248 DKTWTVSFKNLKTGKTDHVKTRFVFIGAGGAAVKLLQLTGLPEAKQYAGFPVGGEFLITD 307
Query: 286 NPA--KQHLVRGNIYPVPDPNFPFLGV-HFTPR-MDGS--VWLGPNAVLA--FKKEGYRW 337
NPA QH + +Y + P + V H R +DG V GP A + F K G +
Sbjct: 308 NPAITAQHTAK--VYGRAELGAPPMSVPHIDTRYIDGKKYVLFGPFATYSNKFLKNGSQL 365
Query: 338 RDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRG 397
+ + L L +Y +++MS R+NEL++Y + +A D +
Sbjct: 366 DLLASTNKSNVLLMTTVGLENLDLVKYLVSQVMMS--DEDRLNELRKYYPDAKAEDWRLS 423
Query: 398 PSGVRAQAL 406
G R Q +
Sbjct: 424 QGGQRVQII 432
>sp|Q9UI17|M2GD_HUMAN Dimethylglycine dehydrogenase, mitochondrial OS=Homo sapiens
GN=DMGDH PE=1 SV=2
Length = 866
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 114/258 (44%), Gaps = 24/258 (9%)
Query: 38 CLVEKEKEFFSMSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMH 97
C E E++ + +Q + V++GGG VGV+ A L MK ++ ++ EL
Sbjct: 30 CGREGEEKPPLSAETQWKDRAETVIIGGGCVGVSLAYHLA--KAGMKDVVLLEKSELTAG 87
Query: 98 QTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDKRN---IPYKKCGKLIVALNEQL 154
T H +G+ Y+ PG K+ + + L YE ++ + + + G + +A
Sbjct: 88 STWHAAGLT---TYFHPGINLKKIHYDSIKL-YEKLEEETGQVVGFHQPGSIRLATT--- 140
Query: 155 EPLH-DLYERSIQN---NVKDVRLVSAEEIKTIEPYC---KGVKAIHSPNTGIVDWGLVT 207
P+ D ++ + + + L+ E+I+ + P K + +++P G +D +T
Sbjct: 141 -PVRVDEFKYQMTRTGWHATEQYLIEPEKIQEMFPLLNMNKVLAGLYNPGDGHIDPYSLT 199
Query: 208 RVMGEEFCELGGEIRLNQQVESFKENPESV-TISTKQGDHLESSYALVCAGLQADEMALK 266
+ + G ++ V S K + + T QG + ++ + AG A E+
Sbjct: 200 MALAAGARKCGALLKYPAPVTSLKARSDGTWDVETPQGS-MRANRIVNAAGFWAREVGKM 258
Query: 267 SGCSLEPAIVPFRGEYLL 284
G LE ++P + +Y++
Sbjct: 259 IG--LEHPLIPVQHQYVV 274
>sp|A4XXB7|MNMC_PSEMY tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Pseudomonas mendocina (strain ymp)
GN=mnmC PE=3 SV=1
Length = 657
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 60 VVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKA 119
VV+G G+ G ATA L ++ L+E+ ++ +G+ GV++ + GT+ +
Sbjct: 258 AVVIGAGLAGCATAASLAAR--GWRVTLLERHDDVAREASGNPQGVLYLKLSAH-GTVLS 314
Query: 120 KLCVEGMNLAYEYFDK--RNIPYKKCGKLIVALNEQ 153
+L V G ++ R + CG L +A + +
Sbjct: 315 RLIVAGFGHTRRLLERLQRGSDWDACGVLQLAFDAK 350
>sp|Q18006|SOX_CAEEL Putative sarcosine oxidase OS=Caenorhabditis elegans GN=C15B12.1
PE=3 SV=2
Length = 384
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 101/248 (40%), Gaps = 16/248 (6%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTL 117
YDVVVVG GI G TA + +K L+E + ELG H+ G + G Y
Sbjct: 5 YDVVVVGAGIFGSCTAYNCQ--KIGLKTLLLE-QFELG-HKNGSSHGKSRITRYAHTEVE 60
Query: 118 KAKLCVEGMNLAYEYFDKRNIP-YKKCGKLIVALNEQLEPLH-DLYERSIQNNVKDVRLV 175
L + N +E R +KK G L V+ ++E +H +L + I++ V +
Sbjct: 61 YVDLVGDAYNQIFELERIRGEKLWKKTGLLWVSTGNEVEKIHTNLKLKGIKHEV-----I 115
Query: 176 SAEEIKTIEPYCK---GVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKE 232
E+ P K + P G++ +EF ++GG I + V S E
Sbjct: 116 KGTEVGKRYPQFKFDDSWNGLIDPMGGVIYADKWLNAFRDEFKKIGGIIHDREIVLSHSE 175
Query: 233 NPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHL 292
++ ++T + + S + G + ++EP + + N + HL
Sbjct: 176 ISNNLFVTTNKSRY-SSKKIIFTVGCWITKFLPDLKFNIEPISISV-CYWKTKNESDSHL 233
Query: 293 VRGNIYPV 300
+ + YPV
Sbjct: 234 LNEDHYPV 241
>sp|Q4JV42|MQO_CORJK Probable malate:quinone oxidoreductase OS=Corynebacterium jeikeium
(strain K411) GN=mqo PE=3 SV=1
Length = 490
Score = 38.1 bits (87), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 106/252 (42%), Gaps = 40/252 (15%)
Query: 201 VDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQ---GDH--LESSYALVC 255
+++G +TR + G E+R +V++ + I+TK GD + +++ +
Sbjct: 180 INYGALTRQYLDAVTAQGVEVRFGNEVKNINRDGSKWKITTKNLHTGDTSMVTANFVFIG 239
Query: 256 AGLQADEMALKSGCSLEPAI-----VPFRGEYL-LLNPAKQHLVRGNIYPVPDPNFPFLG 309
AG A + K+G P I P G++L NP + +Y P +
Sbjct: 240 AGGMALPLLQKAGI---PEIKGYGGFPVSGQWLRCTNPELVEQHQAKVYGKASVGAPPMS 296
Query: 310 VHFTPRMDGSVWLGPNAVLAFKKEGYR---WRDFSVRELFSTLR---YPGFWRLGLK--- 360
V P +D V G +L G+ + S +LF +LR P + +G++
Sbjct: 297 V---PHLDTRVIDGKKGLLFGPYAGWTPKFLKKGSYLDLFKSLRVGNLPSYLGVGVQEMG 353
Query: 361 YTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFGVKA 420
T+Y +E++ + RV L++Y+ E A D + +G R Q +K
Sbjct: 354 LTKYLIEEVLKD--QAARVESLREYMPEARAEDWELVTAGQRVQV------------IKP 399
Query: 421 IHSPHTGIVDWG 432
I +P G +++G
Sbjct: 400 IGAPKFGSLEFG 411
>sp|Q4K8K9|MNMC_PSEF5 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Pseudomonas fluorescens (strain Pf-5 /
ATCC BAA-477) GN=mnmC PE=3 SV=1
Length = 658
Score = 38.1 bits (87), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Query: 55 PALYD--VVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYY 112
PAL + +V+GGG+ G A+A L ++ L+E+ EL +G+ GV++ +
Sbjct: 255 PALGEKTALVIGGGLAGCASAASLAAR--GWQVQLLERHAELAREASGNPQGVLYLKLSA 312
Query: 113 KPGTLKAKLCVEGMNLAYEYFD--KRNIPYKKCGKLIVALNEQ 153
GT +++ + G + +R + CG L +A N +
Sbjct: 313 H-GTALSQMILSGFGYTRRQLEHLQRGQDWDGCGVLQLAFNAK 354
>sp|A2BPP7|MQO_PROMS Probable malate:quinone oxidoreductase OS=Prochlorococcus marinus
(strain AS9601) GN=mqo PE=3 SV=1
Length = 498
Score = 38.1 bits (87), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 12/95 (12%)
Query: 49 MSSSQSP----ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG--HN 102
M+SS++P + +D V+VG GI+ A + P +K ++EK G TG +N
Sbjct: 1 MTSSKNPTNDNSYFDAVLVGAGIMSSTLALLISEVLPDIKFLILEKLNAPGSESTGAFNN 60
Query: 103 SGVVHAG---IYYKPGTLKAKLCVE---GMNLAYE 131
+G HA + Y P K L ++ +N ++E
Sbjct: 61 AGTGHAANCELNYTPLDEKGNLIIDKALSINRSFE 95
>sp|Q75F65|THI4_ASHGO Thiamine thiazole synthase OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=THI4 PE=3 SV=1
Length = 331
Score = 37.4 bits (85), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 21/161 (13%)
Query: 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPG 115
A+ DVV+VG G G++ A L N P ++I ++E + V G + G
Sbjct: 70 AVSDVVIVGAGSSGLSAAYVLAKNRPDLRIAIIE-------------ANVAPGGGAWLGG 116
Query: 116 TLKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLV 175
L + + + + + D+ IPY+ G +V + L L + NVK
Sbjct: 117 QLFSAMIMR--KPTHLFLDELEIPYEDEGDYVVVKHAALFTSTVLSKVLQFPNVKLFNAT 174
Query: 176 SAEEIKTIEPYCKGVKAIHSPNTGIV-DWGLVTRVMGEEFC 215
+ E++ T +P G I G+V +W LVT + C
Sbjct: 175 AVEDLVT-KPSANGGVTI----AGVVTNWTLVTMAHDVQSC 210
>sp|F6H9A9|THI41_VITVI Thiamine thiazole synthase 1, chloroplastic OS=Vitis vinifera
GN=THI1-1 PE=3 SV=1
Length = 353
Score = 37.4 bits (85), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 76/186 (40%), Gaps = 25/186 (13%)
Query: 30 LKYPKMKTCLVEKEKEFFSMSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVE 89
K+ +K +V +E M + A DVVVVG G G++ A EL N P +++ ++E
Sbjct: 59 FKFEPIKESIVSREMTRRYMMDMITYADTDVVVVGAGSAGLSCAYELSKN-PSVQVAIIE 117
Query: 90 KEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVA 149
+ G G + G L + + V A+ + D+ + Y + +V
Sbjct: 118 QSVSPG-------------GGAWLGGQLFSSMVVR--KPAHRFLDELGLEYDEQDNYVVI 162
Query: 150 LNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRV 209
+ L + + + NVK V+AE++ E GV + +W LV+
Sbjct: 163 KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIIKEGKVGGV---------VTNWALVSMN 213
Query: 210 MGEEFC 215
+ C
Sbjct: 214 HDTQSC 219
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 185,203,800
Number of Sequences: 539616
Number of extensions: 8153084
Number of successful extensions: 23493
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 164
Number of HSP's that attempted gapping in prelim test: 23210
Number of HSP's gapped (non-prelim): 425
length of query: 473
length of database: 191,569,459
effective HSP length: 121
effective length of query: 352
effective length of database: 126,275,923
effective search space: 44449124896
effective search space used: 44449124896
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)