Query psy7710
Match_columns 473
No_of_seqs 446 out of 4559
Neff 10.1
Searched_HMMs 46136
Date Fri Aug 16 16:50:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7710.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7710hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2665|consensus 100.0 2.4E-48 5.2E-53 341.0 24.3 370 55-425 46-421 (453)
2 PRK11728 hydroxyglutarate oxid 100.0 2.4E-46 5.3E-51 367.8 39.3 387 57-445 2-392 (393)
3 COG0579 Predicted dehydrogenas 100.0 2.1E-41 4.5E-46 322.4 31.7 274 56-329 2-280 (429)
4 PTZ00383 malate:quinone oxidor 100.0 2.9E-40 6.2E-45 326.9 28.1 387 56-459 44-476 (497)
5 TIGR01373 soxB sarcosine oxida 100.0 1.9E-38 4.1E-43 313.9 36.1 352 55-459 28-400 (407)
6 PRK00711 D-amino acid dehydrog 100.0 1.7E-38 3.7E-43 315.5 30.7 350 59-458 2-416 (416)
7 TIGR03329 Phn_aa_oxid putative 100.0 7E-38 1.5E-42 313.1 30.7 345 55-442 22-391 (460)
8 PF01266 DAO: FAD dependent ox 100.0 2.2E-37 4.7E-42 301.8 31.2 345 59-445 1-358 (358)
9 TIGR03364 HpnW_proposed FAD de 100.0 6.6E-37 1.4E-41 298.7 30.7 327 58-439 1-363 (365)
10 PRK05257 malate:quinone oxidor 100.0 1.7E-36 3.8E-41 301.4 34.1 381 56-445 4-446 (494)
11 PRK12409 D-amino acid dehydrog 100.0 8.7E-37 1.9E-41 302.3 31.5 340 58-443 2-404 (410)
12 PRK11259 solA N-methyltryptoph 100.0 3.7E-36 8.1E-41 294.9 34.9 357 56-458 2-374 (376)
13 TIGR01320 mal_quin_oxido malat 100.0 5.9E-36 1.3E-40 297.6 35.1 344 58-410 1-397 (483)
14 TIGR01377 soxA_mon sarcosine o 100.0 1.6E-35 3.5E-40 290.8 36.0 360 58-460 1-376 (380)
15 PRK13339 malate:quinone oxidor 100.0 1.6E-34 3.4E-39 284.8 36.4 354 56-419 5-413 (497)
16 KOG2844|consensus 100.0 3.3E-35 7.2E-40 281.8 28.8 366 54-459 36-416 (856)
17 PRK01747 mnmC bifunctional tRN 100.0 4.2E-35 9.2E-40 305.2 27.1 346 57-459 260-651 (662)
18 PRK11101 glpA sn-glycerol-3-ph 100.0 9.3E-34 2E-38 287.4 35.0 302 56-405 5-316 (546)
19 COG0665 DadA Glycine/D-amino a 100.0 2E-33 4.3E-38 276.8 30.3 349 56-446 3-368 (387)
20 TIGR02352 thiamin_ThiO glycine 100.0 1.2E-32 2.7E-37 266.1 26.4 316 74-443 1-334 (337)
21 TIGR03197 MnmC_Cterm tRNA U-34 100.0 7.5E-33 1.6E-37 271.2 23.3 316 72-444 1-361 (381)
22 KOG2853|consensus 100.0 1.3E-31 2.8E-36 238.2 27.8 360 56-458 85-497 (509)
23 PLN02464 glycerol-3-phosphate 100.0 9.5E-31 2.1E-35 268.1 31.7 315 56-412 70-410 (627)
24 PRK13369 glycerol-3-phosphate 100.0 5.5E-31 1.2E-35 265.6 28.0 308 55-405 4-325 (502)
25 PRK12266 glpD glycerol-3-phosp 100.0 1.5E-29 3.3E-34 254.8 32.5 317 55-420 4-344 (508)
26 TIGR03377 glycerol3P_GlpA glyc 100.0 9.4E-28 2E-32 243.4 29.8 283 73-405 1-293 (516)
27 COG0578 GlpA Glycerol-3-phosph 100.0 3.4E-27 7.5E-32 229.4 30.2 309 56-405 11-336 (532)
28 KOG2820|consensus 100.0 1.1E-25 2.3E-30 201.0 25.9 346 56-447 6-376 (399)
29 PF06039 Mqo: Malate:quinone o 99.9 4.2E-24 9E-29 201.1 29.0 349 56-410 2-401 (488)
30 KOG3923|consensus 99.9 1.6E-21 3.6E-26 171.4 21.2 277 56-404 2-288 (342)
31 KOG0042|consensus 99.9 1.8E-22 4E-27 190.5 12.2 303 56-408 66-401 (680)
32 KOG2852|consensus 99.9 6.6E-21 1.4E-25 166.5 20.5 325 56-445 9-363 (380)
33 COG2081 Predicted flavoprotein 99.7 8.4E-16 1.8E-20 142.6 16.1 166 56-271 2-188 (408)
34 PF03486 HI0933_like: HI0933-l 99.6 1.1E-14 2.4E-19 141.3 15.4 163 58-271 1-187 (409)
35 TIGR02032 GG-red-SF geranylger 99.6 5.1E-13 1.1E-17 126.4 23.9 162 200-404 87-251 (295)
36 PRK08773 2-octaprenyl-3-methyl 99.6 1.4E-13 3.1E-18 135.6 19.6 86 200-286 109-194 (392)
37 PRK07333 2-octaprenyl-6-methox 99.5 1.2E-12 2.7E-17 129.6 23.2 86 200-286 107-192 (403)
38 COG0644 FixC Dehydrogenases (f 99.5 5.2E-13 1.1E-17 131.3 20.0 211 56-325 2-215 (396)
39 PRK07608 ubiquinone biosynthes 99.5 1E-12 2.2E-17 129.5 19.4 70 200-271 107-177 (388)
40 PF05834 Lycopene_cycl: Lycope 99.5 6.8E-12 1.5E-16 122.3 23.4 118 200-325 83-202 (374)
41 PRK06481 fumarate reductase fl 99.5 2.8E-12 6E-17 129.9 20.8 193 54-266 58-259 (506)
42 PLN02463 lycopene beta cyclase 99.5 3.2E-11 6.8E-16 119.2 26.2 61 200-261 110-170 (447)
43 PLN02697 lycopene epsilon cycl 99.5 1.1E-11 2.4E-16 124.2 22.3 121 200-322 188-319 (529)
44 TIGR01988 Ubi-OHases Ubiquinon 99.4 1.8E-11 3.9E-16 120.5 22.7 71 200-271 102-173 (385)
45 TIGR01790 carotene-cycl lycope 99.4 4E-11 8.7E-16 118.1 25.0 123 200-325 81-212 (388)
46 TIGR00292 thiazole biosynthesi 99.4 4.4E-12 9.5E-17 115.8 16.6 137 56-260 20-170 (254)
47 COG1635 THI4 Ribulose 1,5-bisp 99.4 2.4E-12 5.2E-17 109.3 13.5 137 56-260 29-178 (262)
48 PRK04176 ribulose-1,5-biphosph 99.4 4.3E-12 9.4E-17 116.2 15.8 138 56-261 24-174 (257)
49 PRK07121 hypothetical protein; 99.4 1.7E-11 3.6E-16 124.2 21.4 197 55-266 18-247 (492)
50 PRK05714 2-octaprenyl-3-methyl 99.4 8.5E-12 1.8E-16 123.6 17.9 71 200-271 108-178 (405)
51 TIGR01813 flavo_cyto_c flavocy 99.4 1.3E-11 2.8E-16 123.5 19.1 188 59-265 1-199 (439)
52 PRK10157 putative oxidoreducta 99.4 7.2E-12 1.6E-16 124.3 17.1 69 200-270 104-173 (428)
53 PRK08274 tricarballylate dehyd 99.4 1.1E-11 2.3E-16 125.0 17.7 184 55-260 2-192 (466)
54 PRK06847 hypothetical protein; 99.4 2.9E-11 6.2E-16 118.6 20.3 64 200-263 103-166 (375)
55 TIGR01984 UbiH 2-polyprenyl-6- 99.4 7.2E-11 1.6E-15 116.1 23.1 71 200-271 101-172 (382)
56 PF00890 FAD_binding_2: FAD bi 99.4 1.1E-11 2.4E-16 123.3 16.7 188 59-264 1-207 (417)
57 PRK07494 2-octaprenyl-6-methox 99.4 2E-11 4.3E-16 120.3 18.3 70 201-271 108-177 (388)
58 PRK06185 hypothetical protein; 99.4 2.3E-11 5E-16 120.6 18.7 82 201-285 105-191 (407)
59 PRK08020 ubiF 2-octaprenyl-3-m 99.4 1.1E-11 2.4E-16 122.2 16.1 85 201-286 109-194 (391)
60 PF01946 Thi4: Thi4 family; PD 99.4 1.9E-11 4.1E-16 104.7 14.6 137 56-260 16-165 (230)
61 PRK08244 hypothetical protein; 99.4 8.9E-11 1.9E-15 119.2 22.2 69 202-271 98-169 (493)
62 PRK07804 L-aspartate oxidase; 99.4 3.4E-11 7.4E-16 122.7 19.2 180 55-261 14-211 (541)
63 PRK06184 hypothetical protein; 99.4 9.5E-11 2.1E-15 119.2 22.4 68 203-271 108-178 (502)
64 TIGR02023 BchP-ChlP geranylger 99.4 1.6E-10 3.5E-15 113.6 23.2 69 200-270 88-164 (388)
65 PRK06834 hypothetical protein; 99.4 2.1E-11 4.4E-16 122.8 16.6 68 204-272 100-167 (488)
66 PRK05945 sdhA succinate dehydr 99.4 3.3E-11 7.1E-16 123.9 18.2 188 56-261 2-198 (575)
67 COG0654 UbiH 2-polyprenyl-6-me 99.4 4.4E-11 9.5E-16 117.5 18.4 67 201-268 101-169 (387)
68 PRK07573 sdhA succinate dehydr 99.3 3.1E-11 6.6E-16 125.0 17.8 194 52-261 30-233 (640)
69 PRK07190 hypothetical protein; 99.3 2E-11 4.4E-16 122.6 15.7 67 204-271 109-175 (487)
70 TIGR00275 flavoprotein, HI0933 99.3 1.1E-10 2.4E-15 114.7 20.0 77 203-281 104-190 (400)
71 PRK08013 oxidoreductase; Provi 99.3 2.6E-11 5.7E-16 119.7 15.5 70 201-271 108-178 (400)
72 PRK10015 oxidoreductase; Provi 99.3 2E-11 4.3E-16 121.0 14.1 68 201-270 105-173 (429)
73 PTZ00139 Succinate dehydrogena 99.3 8.4E-11 1.8E-15 121.4 19.0 185 56-260 28-229 (617)
74 PRK07364 2-octaprenyl-6-methox 99.3 7.1E-11 1.5E-15 117.5 17.5 67 203-270 120-190 (415)
75 PRK06175 L-aspartate oxidase; 99.3 7.1E-11 1.5E-15 117.1 17.1 181 56-260 3-189 (433)
76 PRK09126 hypothetical protein; 99.3 1.1E-10 2.5E-15 115.1 18.3 69 202-271 108-177 (392)
77 PF13738 Pyr_redox_3: Pyridine 99.3 1.8E-11 4E-16 109.0 11.5 59 202-260 80-138 (203)
78 PRK05732 2-octaprenyl-6-methox 99.3 6E-10 1.3E-14 110.1 23.3 70 201-271 109-179 (395)
79 TIGR01812 sdhA_frdA_Gneg succi 99.3 1.8E-10 3.9E-15 118.7 19.7 183 59-260 1-191 (566)
80 COG1233 Phytoene dehydrogenase 99.3 2.6E-11 5.7E-16 122.0 13.2 64 192-258 215-279 (487)
81 TIGR00551 nadB L-aspartate oxi 99.3 1.4E-10 3E-15 117.2 18.1 183 57-261 2-190 (488)
82 PRK09231 fumarate reductase fl 99.3 1.3E-10 2.9E-15 119.3 18.0 182 56-261 3-197 (582)
83 PRK06452 sdhA succinate dehydr 99.3 1.7E-10 3.6E-15 118.3 18.6 185 56-260 4-198 (566)
84 PRK05192 tRNA uridine 5-carbox 99.3 3.5E-11 7.5E-16 120.7 13.0 152 56-260 3-157 (618)
85 PRK09078 sdhA succinate dehydr 99.3 2.8E-10 6E-15 117.4 19.5 178 56-261 11-213 (598)
86 PRK06134 putative FAD-binding 99.3 2.6E-10 5.7E-15 117.3 19.3 67 198-264 211-282 (581)
87 PRK08850 2-octaprenyl-6-methox 99.3 3.6E-10 7.8E-15 111.9 19.5 68 203-271 110-178 (405)
88 TIGR01176 fum_red_Fp fumarate 99.3 2.4E-10 5.2E-15 117.1 18.7 180 56-261 2-196 (580)
89 PRK08163 salicylate hydroxylas 99.3 2.6E-10 5.6E-15 112.7 18.2 69 200-268 105-174 (396)
90 PRK06183 mhpA 3-(3-hydroxyphen 99.3 2.3E-10 5E-15 117.3 18.1 69 202-271 111-184 (538)
91 PLN00128 Succinate dehydrogena 99.3 3E-10 6.5E-15 117.3 18.9 189 56-261 49-251 (635)
92 PRK07803 sdhA succinate dehydr 99.3 2.9E-10 6.3E-15 117.7 18.9 185 56-260 7-213 (626)
93 TIGR01989 COQ6 Ubiquinone bios 99.3 2.8E-10 6E-15 113.6 18.1 70 201-271 114-193 (437)
94 PRK06263 sdhA succinate dehydr 99.3 3.6E-10 7.9E-15 115.6 19.2 177 56-260 6-197 (543)
95 PRK12842 putative succinate de 99.2 1.9E-10 4E-15 118.5 16.5 59 203-261 213-276 (574)
96 PLN02815 L-aspartate oxidase 99.2 2.4E-10 5.3E-15 116.9 16.8 184 55-261 27-223 (594)
97 PRK12835 3-ketosteroid-delta-1 99.2 3.9E-10 8.6E-15 115.8 18.1 50 54-106 8-57 (584)
98 PRK08958 sdhA succinate dehydr 99.2 3.2E-10 6.9E-15 116.6 17.3 187 56-261 6-207 (588)
99 PF01494 FAD_binding_3: FAD bi 99.2 2.2E-10 4.8E-15 111.4 15.5 70 200-270 107-181 (356)
100 TIGR02730 carot_isom carotene 99.2 4.3E-10 9.3E-15 114.1 17.8 67 191-260 219-286 (493)
101 PLN00093 geranylgeranyl diphos 99.2 7.7E-10 1.7E-14 110.0 19.1 69 200-270 128-208 (450)
102 PRK06069 sdhA succinate dehydr 99.2 5.2E-10 1.1E-14 115.2 18.6 184 56-260 4-200 (577)
103 PRK12845 3-ketosteroid-delta-1 99.2 2.4E-10 5.2E-15 116.6 15.8 50 54-107 13-62 (564)
104 PLN02172 flavin-containing mon 99.2 1.9E-10 4E-15 114.5 14.7 58 203-260 110-173 (461)
105 PRK07588 hypothetical protein; 99.2 1.2E-10 2.6E-15 114.8 13.3 59 202-261 101-159 (391)
106 PRK07395 L-aspartate oxidase; 99.2 5.2E-10 1.1E-14 114.0 18.1 183 54-260 6-197 (553)
107 PRK08275 putative oxidoreducta 99.2 5.9E-10 1.3E-14 114.3 18.5 187 56-261 8-201 (554)
108 PRK08849 2-octaprenyl-3-methyl 99.2 2.9E-10 6.2E-15 111.7 15.4 66 204-270 110-176 (384)
109 PRK06126 hypothetical protein; 99.2 5E-10 1.1E-14 115.2 17.7 69 202-271 124-198 (545)
110 PRK08205 sdhA succinate dehydr 99.2 6.6E-10 1.4E-14 114.4 18.3 181 56-261 4-207 (583)
111 TIGR01810 betA choline dehydro 99.2 5.9E-10 1.3E-14 114.0 17.7 56 215-270 205-266 (532)
112 PRK07057 sdhA succinate dehydr 99.2 8.5E-10 1.8E-14 113.6 18.9 186 56-261 11-212 (591)
113 PRK06617 2-octaprenyl-6-methox 99.2 1.3E-09 2.7E-14 106.8 19.2 69 200-270 100-169 (374)
114 PRK06854 adenylylsulfate reduc 99.2 1.2E-09 2.7E-14 112.7 19.7 180 56-261 10-196 (608)
115 PRK12843 putative FAD-binding 99.2 6E-10 1.3E-14 114.6 17.1 67 201-267 218-291 (578)
116 TIGR01789 lycopene_cycl lycope 99.2 3.1E-09 6.8E-14 103.2 21.1 111 200-325 85-196 (370)
117 PRK12837 3-ketosteroid-delta-1 99.2 5.6E-10 1.2E-14 113.4 16.6 64 204-267 173-244 (513)
118 TIGR03378 glycerol3P_GlpB glyc 99.2 2.8E-09 6E-14 102.9 20.3 66 202-267 261-330 (419)
119 PRK12844 3-ketosteroid-delta-1 99.2 3.4E-10 7.5E-15 115.8 14.9 49 56-107 5-53 (557)
120 PRK08641 sdhA succinate dehydr 99.2 1.1E-09 2.3E-14 112.8 18.5 185 56-261 2-201 (589)
121 PRK08626 fumarate reductase fl 99.2 8.2E-10 1.8E-14 114.7 17.6 58 204-261 158-221 (657)
122 PRK06753 hypothetical protein; 99.2 1.2E-09 2.6E-14 107.0 17.9 67 201-270 95-161 (373)
123 PRK08132 FAD-dependent oxidore 99.2 6E-09 1.3E-13 107.2 23.5 67 204-271 125-195 (547)
124 PRK08071 L-aspartate oxidase; 99.2 9.1E-10 2E-14 111.5 17.0 183 57-261 3-191 (510)
125 PRK07512 L-aspartate oxidase; 99.2 8.8E-10 1.9E-14 111.7 16.8 177 56-260 8-197 (513)
126 PF00732 GMC_oxred_N: GMC oxid 99.2 1.9E-10 4.2E-15 108.9 11.3 64 207-270 196-269 (296)
127 TIGR01292 TRX_reduct thioredox 99.2 4.6E-10 9.9E-15 106.5 13.9 56 204-260 57-112 (300)
128 PRK08401 L-aspartate oxidase; 99.2 2.1E-09 4.5E-14 107.9 19.2 175 58-262 2-177 (466)
129 PRK02106 choline dehydrogenase 99.2 7.4E-10 1.6E-14 114.0 15.6 57 215-271 212-274 (560)
130 PRK07233 hypothetical protein; 99.1 1.6E-09 3.6E-14 108.4 17.7 56 204-259 198-253 (434)
131 PRK06996 hypothetical protein; 99.1 5.5E-10 1.2E-14 110.2 13.4 72 200-271 111-185 (398)
132 TIGR02028 ChlP geranylgeranyl 99.1 2.3E-09 4.9E-14 105.5 17.6 69 200-270 89-169 (398)
133 PTZ00306 NADH-dependent fumara 99.1 2.8E-09 6E-14 117.8 20.0 190 54-261 406-621 (1167)
134 PRK07045 putative monooxygenas 99.1 1.8E-09 3.8E-14 106.4 16.8 67 203-270 105-175 (388)
135 PRK12834 putative FAD-binding 99.1 6.1E-10 1.3E-14 114.1 13.9 48 56-106 3-52 (549)
136 PRK08243 4-hydroxybenzoate 3-m 99.1 1.5E-09 3.3E-14 106.9 16.2 66 204-270 103-172 (392)
137 PRK12839 hypothetical protein; 99.1 5.3E-10 1.2E-14 114.4 13.2 61 201-261 211-277 (572)
138 PRK07843 3-ketosteroid-delta-1 99.1 1.6E-09 3.4E-14 111.0 16.6 48 56-106 6-53 (557)
139 TIGR02734 crtI_fam phytoene de 99.1 7.3E-10 1.6E-14 112.9 14.1 65 192-259 210-275 (502)
140 PRK09754 phenylpropionate diox 99.1 4.9E-09 1.1E-13 103.3 19.4 64 207-271 189-253 (396)
141 PRK05868 hypothetical protein; 99.1 1E-09 2.2E-14 107.1 14.3 62 204-267 105-166 (372)
142 PRK04965 NADH:flavorubredoxin 99.1 5.9E-09 1.3E-13 102.2 19.6 65 207-271 186-251 (377)
143 PRK07236 hypothetical protein; 99.1 1.6E-09 3.4E-14 106.7 15.6 60 205-267 101-160 (386)
144 PLN02661 Putative thiazole syn 99.1 2.1E-09 4.6E-14 100.8 15.4 42 55-97 90-131 (357)
145 PLN02985 squalene monooxygenas 99.1 3.9E-09 8.5E-14 106.7 18.6 69 200-270 143-217 (514)
146 PRK05249 soluble pyridine nucl 99.1 2.1E-09 4.6E-14 108.3 16.6 57 204-260 216-272 (461)
147 TIGR01811 sdhA_Bsu succinate d 99.1 2E-09 4.4E-14 110.9 16.5 44 60-105 1-44 (603)
148 COG3380 Predicted NAD/FAD-depe 99.1 6.8E-10 1.5E-14 97.5 10.5 156 58-264 2-165 (331)
149 PRK09077 L-aspartate oxidase; 99.1 7.2E-09 1.6E-13 105.8 19.4 176 56-260 7-207 (536)
150 PRK11445 putative oxidoreducta 99.1 4.9E-09 1.1E-13 101.6 17.4 67 201-269 96-165 (351)
151 COG0492 TrxB Thioredoxin reduc 99.1 1.1E-09 2.4E-14 102.2 12.1 58 202-261 59-116 (305)
152 PTZ00363 rab-GDP dissociation 99.1 2.4E-09 5.2E-14 105.5 14.6 57 204-260 232-290 (443)
153 TIGR00136 gidA glucose-inhibit 99.1 1.3E-09 2.8E-14 109.4 12.8 65 193-259 86-153 (617)
154 PF12831 FAD_oxidored: FAD dep 99.1 9.3E-11 2E-15 116.3 4.5 155 59-271 1-159 (428)
155 PRK06116 glutathione reductase 99.1 2.1E-09 4.5E-14 107.9 14.1 57 204-260 208-265 (450)
156 TIGR03143 AhpF_homolog putativ 99.1 1.9E-09 4.1E-14 110.5 13.7 112 56-260 3-114 (555)
157 PF01134 GIDA: Glucose inhibit 99.0 1.6E-09 3.5E-14 103.3 11.8 58 200-258 91-150 (392)
158 PRK13977 myosin-cross-reactive 99.0 8.8E-09 1.9E-13 102.7 17.3 45 56-100 21-67 (576)
159 COG1231 Monoamine oxidase [Ami 99.0 3.3E-09 7.1E-14 100.8 13.0 44 55-100 5-48 (450)
160 PRK15317 alkyl hydroperoxide r 99.0 3.8E-09 8.2E-14 107.6 14.3 58 203-260 265-322 (517)
161 TIGR02485 CobZ_N-term precorri 99.0 2.7E-09 5.9E-14 106.4 12.8 184 62-266 1-191 (432)
162 TIGR01424 gluta_reduc_2 glutat 99.0 9.4E-09 2E-13 102.9 16.6 45 57-106 2-46 (446)
163 TIGR03219 salicylate_mono sali 99.0 5E-09 1.1E-13 104.1 14.5 59 201-261 102-160 (414)
164 TIGR02360 pbenz_hydroxyl 4-hyd 99.0 9.1E-09 2E-13 101.1 16.2 65 204-269 103-171 (390)
165 PRK06475 salicylate hydroxylas 99.0 3.6E-09 7.8E-14 104.6 13.1 68 201-269 104-175 (400)
166 TIGR02061 aprA adenosine phosp 99.0 1.3E-08 2.7E-13 104.4 17.4 175 59-261 1-192 (614)
167 PRK08294 phenol 2-monooxygenas 99.0 4.1E-08 8.9E-13 101.9 21.1 70 201-271 138-220 (634)
168 PRK06467 dihydrolipoamide dehy 99.0 1.8E-08 3.9E-13 101.4 17.9 47 56-106 3-49 (471)
169 PRK08010 pyridine nucleotide-d 99.0 4.6E-09 9.9E-14 105.1 13.3 57 204-261 199-255 (441)
170 PLN02676 polyamine oxidase 99.0 1E-08 2.2E-13 103.2 15.4 56 204-259 224-285 (487)
171 PRK07538 hypothetical protein; 99.0 6.1E-09 1.3E-13 103.4 13.7 67 201-268 99-172 (413)
172 PRK12416 protoporphyrinogen ox 99.0 1E-08 2.2E-13 103.5 15.1 54 204-259 226-279 (463)
173 PLN02927 antheraxanthin epoxid 99.0 9.1E-09 2E-13 105.3 14.6 66 201-269 191-257 (668)
174 PRK14694 putative mercuric red 99.0 2.2E-08 4.7E-13 100.9 17.2 56 204-260 218-273 (468)
175 TIGR03140 AhpF alkyl hydropero 99.0 1E-08 2.2E-13 104.3 14.8 57 204-260 267-323 (515)
176 PRK07208 hypothetical protein; 99.0 2.6E-08 5.6E-13 101.0 17.7 56 204-259 218-279 (479)
177 PRK09897 hypothetical protein; 99.0 2.2E-08 4.8E-13 100.7 16.4 53 208-260 111-166 (534)
178 PRK07251 pyridine nucleotide-d 98.9 2.3E-08 4.9E-13 100.0 16.2 56 204-260 198-253 (438)
179 PRK05976 dihydrolipoamide dehy 98.9 3.4E-08 7.3E-13 99.7 17.5 45 56-105 3-47 (472)
180 TIGR01350 lipoamide_DH dihydro 98.9 5.3E-08 1.2E-12 98.2 18.9 57 204-260 211-269 (461)
181 PRK11883 protoporphyrinogen ox 98.9 2E-08 4.4E-13 101.1 15.6 53 205-259 222-274 (451)
182 TIGR02733 desat_CrtD C-3',4' d 98.9 2.2E-08 4.7E-13 101.8 15.8 56 204-259 232-293 (492)
183 TIGR01421 gluta_reduc_1 glutat 98.9 3E-08 6.5E-13 99.2 16.4 38 57-97 2-39 (450)
184 PRK06416 dihydrolipoamide dehy 98.9 3.8E-08 8.3E-13 99.2 17.3 57 204-260 213-272 (462)
185 COG1249 Lpd Pyruvate/2-oxoglut 98.9 2.3E-08 4.9E-13 98.4 14.9 70 203-272 213-287 (454)
186 COG1053 SdhA Succinate dehydro 98.9 1.4E-08 3.1E-13 102.6 13.7 186 56-260 5-202 (562)
187 TIGR00562 proto_IX_ox protopor 98.9 9.4E-09 2E-13 103.8 12.1 44 57-100 2-47 (462)
188 COG0029 NadB Aspartate oxidase 98.9 8.2E-09 1.8E-13 98.8 10.8 174 59-261 9-197 (518)
189 COG2509 Uncharacterized FAD-de 98.9 6.6E-08 1.4E-12 91.6 16.4 78 195-272 164-246 (486)
190 PLN02268 probable polyamine ox 98.9 1.1E-08 2.3E-13 102.5 12.0 41 58-100 1-41 (435)
191 PLN02568 polyamine oxidase 98.9 5.6E-08 1.2E-12 98.7 17.2 54 204-259 242-295 (539)
192 PRK13800 putative oxidoreducta 98.9 8.2E-08 1.8E-12 103.8 19.2 35 56-92 12-46 (897)
193 KOG1399|consensus 98.9 1.4E-08 3.1E-13 99.3 12.1 63 204-266 90-160 (448)
194 PTZ00058 glutathione reductase 98.9 2.3E-08 5E-13 101.7 13.8 46 56-106 47-92 (561)
195 PRK06370 mercuric reductase; V 98.9 2.6E-08 5.7E-13 100.3 14.2 40 56-98 4-43 (463)
196 COG2303 BetA Choline dehydroge 98.9 3.1E-08 6.8E-13 100.8 14.7 58 213-270 212-277 (542)
197 PTZ00367 squalene epoxidase; P 98.9 3.5E-07 7.5E-12 93.2 22.1 35 56-92 32-66 (567)
198 PRK10262 thioredoxin reductase 98.9 3.6E-08 7.8E-13 94.4 14.3 54 205-260 64-117 (321)
199 PRK14727 putative mercuric red 98.9 1.1E-07 2.5E-12 95.9 18.3 57 204-261 228-284 (479)
200 PF00070 Pyr_redox: Pyridine n 98.9 3.3E-08 7E-13 73.3 10.6 33 59-93 1-33 (80)
201 PLN02785 Protein HOTHEAD 98.9 4.1E-08 8.8E-13 100.6 14.9 62 210-271 226-302 (587)
202 PRK05329 anaerobic glycerol-3- 98.9 6.4E-07 1.4E-11 87.8 22.5 58 203-260 258-318 (422)
203 KOG2415|consensus 98.9 2.8E-08 6.1E-13 92.5 12.1 171 56-270 75-269 (621)
204 KOG1298|consensus 98.8 6.1E-08 1.3E-12 89.5 13.3 161 55-267 43-214 (509)
205 KOG2614|consensus 98.8 5.4E-07 1.2E-11 84.8 19.7 36 57-94 2-37 (420)
206 PRK06115 dihydrolipoamide dehy 98.8 1.9E-07 4.1E-12 94.0 18.1 46 57-106 3-48 (466)
207 PRK13748 putative mercuric red 98.8 1.5E-07 3.3E-12 97.3 17.7 66 204-270 310-378 (561)
208 COG2072 TrkA Predicted flavopr 98.8 2.8E-08 6.1E-13 98.6 11.8 39 55-95 6-45 (443)
209 COG1232 HemY Protoporphyrinoge 98.8 8.5E-08 1.9E-12 93.4 14.7 53 204-259 215-267 (444)
210 PLN02507 glutathione reductase 98.8 9.2E-08 2E-12 96.8 15.4 33 56-90 24-56 (499)
211 COG1252 Ndh NADH dehydrogenase 98.8 9.1E-09 2E-13 98.6 7.6 60 204-267 209-269 (405)
212 PF04820 Trp_halogenase: Trypt 98.8 4.5E-08 9.7E-13 97.5 12.8 64 197-261 147-212 (454)
213 PLN02612 phytoene desaturase 98.8 8.5E-08 1.8E-12 98.4 14.9 56 204-259 308-365 (567)
214 TIGR02731 phytoene_desat phyto 98.8 1.2E-07 2.7E-12 95.3 15.8 57 203-259 212-275 (453)
215 PF13454 NAD_binding_9: FAD-NA 98.8 1.6E-07 3.5E-12 79.5 13.7 42 217-258 113-155 (156)
216 PF00743 FMO-like: Flavin-bind 98.8 4E-08 8.6E-13 99.3 11.6 60 201-260 81-150 (531)
217 TIGR02053 MerA mercuric reduct 98.8 2.5E-07 5.4E-12 93.3 17.4 57 204-260 207-266 (463)
218 COG3075 GlpB Anaerobic glycero 98.8 1.8E-07 3.8E-12 84.8 14.1 62 204-265 258-323 (421)
219 PRK06327 dihydrolipoamide dehy 98.8 2.1E-07 4.6E-12 93.9 16.6 33 56-90 3-35 (475)
220 KOG2404|consensus 98.8 8.8E-08 1.9E-12 86.3 11.8 48 59-108 11-58 (477)
221 PLN02546 glutathione reductase 98.8 2.9E-07 6.2E-12 93.8 17.1 33 56-90 78-110 (558)
222 PTZ00052 thioredoxin reductase 98.8 5.3E-07 1.2E-11 91.3 18.4 57 204-260 222-278 (499)
223 PLN02529 lysine-specific histo 98.7 3E-07 6.6E-12 95.5 16.8 43 56-100 159-201 (738)
224 PRK07845 flavoprotein disulfid 98.7 5.7E-07 1.2E-11 90.5 18.0 44 58-106 2-45 (466)
225 PRK07818 dihydrolipoamide dehy 98.7 1.8E-07 4E-12 94.2 14.4 39 57-98 4-42 (466)
226 TIGR02374 nitri_red_nirB nitri 98.7 8E-08 1.7E-12 102.4 11.8 64 208-271 186-250 (785)
227 TIGR02732 zeta_caro_desat caro 98.7 2.6E-07 5.7E-12 92.9 14.8 61 205-265 220-290 (474)
228 PLN02576 protoporphyrinogen ox 98.7 3E-07 6.6E-12 93.7 14.7 45 56-101 11-55 (496)
229 PRK09564 coenzyme A disulfide 98.7 1.3E-07 2.9E-12 94.8 11.7 65 206-271 193-258 (444)
230 PRK14989 nitrite reductase sub 98.7 9.8E-08 2.1E-12 101.7 11.1 66 207-272 190-258 (847)
231 PF13450 NAD_binding_8: NAD(P) 98.6 3.7E-08 7.9E-13 70.1 4.6 37 62-100 1-37 (68)
232 KOG1335|consensus 98.6 7.2E-07 1.6E-11 82.5 13.8 56 204-259 252-313 (506)
233 COG2907 Predicted NAD/FAD-bind 98.6 1.6E-07 3.5E-12 85.7 9.5 43 56-101 7-49 (447)
234 TIGR01423 trypano_reduc trypan 98.6 1.3E-06 2.9E-11 87.9 17.2 49 56-107 2-58 (486)
235 PRK09564 coenzyme A disulfide 98.6 2.3E-07 5E-12 93.1 11.8 50 211-260 63-115 (444)
236 TIGR01438 TGR thioredoxin and 98.6 5.5E-07 1.2E-11 90.8 14.5 33 57-91 2-34 (484)
237 PRK12779 putative bifunctional 98.6 1.4E-07 2.9E-12 101.7 10.2 38 56-95 305-342 (944)
238 PRK13512 coenzyme A disulfide 98.6 3E-07 6.5E-12 91.8 12.1 61 207-271 192-253 (438)
239 KOG1238|consensus 98.6 1.9E-06 4E-11 85.9 17.0 245 7-271 55-330 (623)
240 PTZ00153 lipoamide dehydrogena 98.6 1.3E-06 2.9E-11 90.3 16.8 47 56-106 115-162 (659)
241 PF07992 Pyr_redox_2: Pyridine 98.6 5.1E-07 1.1E-11 80.1 11.6 52 209-260 63-122 (201)
242 PLN02328 lysine-specific histo 98.6 8.5E-07 1.8E-11 92.8 14.7 43 56-100 237-279 (808)
243 COG3573 Predicted oxidoreducta 98.6 7.8E-07 1.7E-11 80.8 12.5 48 56-105 4-53 (552)
244 TIGR02462 pyranose_ox pyranose 98.6 1.9E-06 4E-11 86.9 16.7 36 58-95 1-36 (544)
245 PLN02487 zeta-carotene desatur 98.5 1.5E-06 3.3E-11 88.4 14.6 60 205-264 296-365 (569)
246 TIGR01424 gluta_reduc_2 glutat 98.5 1.4E-06 3.1E-11 87.2 14.3 53 208-260 211-263 (446)
247 PRK06912 acoL dihydrolipoamide 98.5 4.5E-06 9.8E-11 84.0 17.9 43 59-106 2-44 (458)
248 PRK06292 dihydrolipoamide dehy 98.5 2.7E-06 5.8E-11 85.8 16.3 39 56-97 2-40 (460)
249 KOG0685|consensus 98.5 5.4E-07 1.2E-11 86.0 10.3 54 56-110 20-75 (498)
250 KOG2960|consensus 98.5 2E-07 4.4E-12 79.0 5.9 42 57-98 76-117 (328)
251 TIGR03452 mycothione_red mycot 98.5 1.7E-06 3.7E-11 86.7 13.6 43 57-106 2-44 (452)
252 PRK07846 mycothione reductase; 98.5 1.7E-06 3.6E-11 86.7 13.4 44 57-107 1-44 (451)
253 COG0445 GidA Flavin-dependent 98.5 8.1E-07 1.8E-11 86.3 10.1 151 56-260 3-158 (621)
254 KOG0404|consensus 98.5 6.3E-07 1.4E-11 76.7 8.2 57 204-262 70-126 (322)
255 PRK13512 coenzyme A disulfide 98.5 1.2E-06 2.7E-11 87.4 11.7 46 215-260 69-117 (438)
256 PLN03000 amine oxidase 98.5 6.3E-06 1.4E-10 86.4 17.1 43 56-100 183-225 (881)
257 PRK04965 NADH:flavorubredoxin 98.5 1.3E-06 2.7E-11 85.7 11.5 35 58-92 3-37 (377)
258 KOG4254|consensus 98.5 4.7E-07 1E-11 85.5 7.9 57 204-260 264-321 (561)
259 PRK08255 salicylyl-CoA 5-hydro 98.4 6.7E-07 1.5E-11 95.2 9.6 49 201-261 94-142 (765)
260 PLN02976 amine oxidase 98.4 2.4E-06 5.3E-11 92.6 13.6 42 56-99 692-733 (1713)
261 TIGR01372 soxA sarcosine oxida 98.4 1.9E-06 4.2E-11 94.2 12.7 38 56-95 162-199 (985)
262 PRK09853 putative selenate red 98.4 1.8E-06 3.8E-11 92.1 11.5 38 56-95 538-575 (1019)
263 PRK09754 phenylpropionate diox 98.4 2.2E-06 4.8E-11 84.6 11.2 45 214-260 68-112 (396)
264 TIGR03169 Nterm_to_SelD pyridi 98.4 1.3E-06 2.9E-11 85.2 9.5 48 210-260 60-107 (364)
265 PRK07845 flavoprotein disulfid 98.4 3.8E-06 8.2E-11 84.6 12.8 63 208-270 222-287 (466)
266 TIGR03385 CoA_CoA_reduc CoA-di 98.4 6E-06 1.3E-10 82.5 14.0 62 208-271 183-245 (427)
267 PRK12831 putative oxidoreducta 98.4 8.6E-07 1.9E-11 88.9 7.8 38 56-95 139-176 (464)
268 TIGR03862 flavo_PP4765 unchara 98.4 9.9E-06 2.1E-10 77.9 14.3 73 203-278 85-168 (376)
269 PLN02507 glutathione reductase 98.4 5.7E-06 1.2E-10 83.9 13.3 55 206-260 246-300 (499)
270 TIGR01421 gluta_reduc_1 glutat 98.4 5E-06 1.1E-10 83.3 12.8 56 206-261 209-266 (450)
271 PRK12775 putative trifunctiona 98.3 1E-06 2.2E-11 95.9 8.0 38 56-95 429-466 (1006)
272 PTZ00318 NADH dehydrogenase-li 98.3 3.6E-06 7.7E-11 83.8 11.1 51 209-260 67-125 (424)
273 PLN02852 ferredoxin-NADP+ redu 98.3 3E-06 6.4E-11 84.5 10.2 40 56-95 25-64 (491)
274 TIGR01316 gltA glutamate synth 98.3 1.1E-06 2.3E-11 88.1 6.9 38 56-95 132-169 (449)
275 PRK12778 putative bifunctional 98.3 1.4E-06 3E-11 93.0 8.1 38 56-95 430-467 (752)
276 PRK07818 dihydrolipoamide dehy 98.3 8.2E-06 1.8E-10 82.3 13.1 54 207-260 216-273 (466)
277 COG1251 NirB NAD(P)H-nitrite r 98.3 1.7E-06 3.7E-11 86.9 7.9 158 7-273 99-257 (793)
278 PRK05976 dihydrolipoamide dehy 98.3 8.4E-06 1.8E-10 82.4 13.1 54 207-260 224-281 (472)
279 TIGR03315 Se_ygfK putative sel 98.3 2.4E-06 5.2E-11 91.5 9.4 38 56-95 536-573 (1012)
280 COG0446 HcaD Uncharacterized N 98.3 5.1E-06 1.1E-10 82.6 11.2 106 57-267 136-245 (415)
281 PRK06467 dihydrolipoamide dehy 98.3 7.4E-06 1.6E-10 82.6 12.3 52 208-260 219-274 (471)
282 KOG0029|consensus 98.3 8.9E-07 1.9E-11 88.4 5.4 42 56-99 14-55 (501)
283 PTZ00318 NADH dehydrogenase-li 98.3 9.7E-06 2.1E-10 80.7 12.8 61 206-270 230-290 (424)
284 PRK06370 mercuric reductase; V 98.3 1.2E-05 2.5E-10 81.2 13.5 53 208-260 216-271 (463)
285 PRK06912 acoL dihydrolipoamide 98.3 1.2E-05 2.7E-10 80.8 13.6 54 207-260 214-268 (458)
286 PRK11749 dihydropyrimidine deh 98.3 2.9E-06 6.4E-11 85.3 9.1 38 56-95 139-176 (457)
287 TIGR02374 nitri_red_nirB nitri 98.3 4.4E-06 9.4E-11 89.2 10.3 47 212-260 62-108 (785)
288 PRK06327 dihydrolipoamide dehy 98.2 1.3E-05 2.9E-10 80.9 12.9 54 207-260 227-284 (475)
289 PRK06115 dihydrolipoamide dehy 98.2 1.8E-05 3.9E-10 79.8 13.3 53 208-260 219-276 (466)
290 KOG1336|consensus 98.2 9.6E-06 2.1E-10 77.8 10.5 55 206-260 257-313 (478)
291 PRK07846 mycothione reductase; 98.2 1.7E-05 3.6E-10 79.6 12.9 45 216-260 218-262 (451)
292 COG4529 Uncharacterized protei 98.2 2.9E-05 6.2E-10 75.1 13.5 43 57-99 1-44 (474)
293 COG0562 Glf UDP-galactopyranos 98.2 2.6E-06 5.7E-11 77.2 5.2 42 57-100 1-42 (374)
294 PRK12770 putative glutamate sy 98.1 1.3E-05 2.7E-10 77.9 10.1 38 56-95 17-54 (352)
295 KOG1346|consensus 98.1 1.5E-05 3.3E-10 74.6 9.7 78 200-277 389-467 (659)
296 TIGR01423 trypano_reduc trypan 98.1 2.8E-05 6E-10 78.4 12.5 55 206-260 233-288 (486)
297 TIGR00137 gid_trmFO tRNA:m(5)U 98.1 3.2E-05 7E-10 75.4 12.3 36 58-95 1-36 (433)
298 TIGR01438 TGR thioredoxin and 98.1 3.3E-05 7E-10 78.1 12.8 54 207-260 223-279 (484)
299 TIGR03452 mycothione_red mycot 98.1 3.6E-05 7.9E-10 77.2 13.0 45 216-260 221-265 (452)
300 PRK14989 nitrite reductase sub 98.1 1.8E-05 3.9E-10 84.7 11.2 47 212-260 67-113 (847)
301 PLN02546 glutathione reductase 98.1 4.2E-05 9.1E-10 78.2 13.2 65 207-271 296-364 (558)
302 PRK12814 putative NADPH-depend 98.1 8.6E-06 1.9E-10 85.2 8.3 38 56-95 192-229 (652)
303 TIGR01318 gltD_gamma_fam gluta 98.1 1.1E-05 2.3E-10 81.2 8.6 38 56-95 140-177 (467)
304 PTZ00058 glutathione reductase 98.1 4.5E-05 9.7E-10 78.0 13.1 54 207-260 281-336 (561)
305 KOG2311|consensus 98.1 1.6E-05 3.5E-10 75.8 8.9 151 55-259 26-185 (679)
306 PRK12810 gltD glutamate syntha 98.1 1.2E-05 2.7E-10 81.0 8.7 38 56-95 142-179 (471)
307 PRK12769 putative oxidoreducta 98.1 1.1E-05 2.4E-10 84.7 8.4 38 56-95 326-363 (654)
308 TIGR00031 UDP-GALP_mutase UDP- 98.1 4.9E-06 1.1E-10 80.3 5.2 40 58-99 2-41 (377)
309 COG1252 Ndh NADH dehydrogenase 98.0 1.8E-05 3.9E-10 76.2 8.8 52 206-260 59-111 (405)
310 COG3349 Uncharacterized conser 98.0 5.5E-06 1.2E-10 80.8 4.6 38 59-98 2-39 (485)
311 COG3634 AhpF Alkyl hydroperoxi 98.0 1.5E-05 3.2E-10 73.1 6.6 57 204-260 266-325 (520)
312 PRK05675 sdhA succinate dehydr 98.0 0.00015 3.4E-09 74.7 15.1 59 203-261 125-190 (570)
313 KOG0405|consensus 98.0 9.3E-05 2E-09 68.0 11.7 49 56-108 19-67 (478)
314 TIGR01292 TRX_reduct thioredox 98.0 9.9E-05 2.2E-09 69.8 12.6 32 58-91 142-173 (300)
315 PF06100 Strep_67kDa_ant: Stre 98.0 0.0012 2.5E-08 64.7 19.4 40 58-97 3-44 (500)
316 PRK12809 putative oxidoreducta 98.0 1.8E-05 3.8E-10 82.8 7.6 38 56-95 309-346 (639)
317 TIGR01317 GOGAT_sm_gam glutama 98.0 2.4E-05 5.1E-10 79.1 8.2 37 57-95 143-179 (485)
318 KOG1276|consensus 98.0 1E-05 2.2E-10 76.3 5.1 42 56-97 10-51 (491)
319 PF13434 K_oxygenase: L-lysine 98.0 1.3E-05 2.8E-10 76.7 6.0 37 57-94 2-38 (341)
320 PRK06292 dihydrolipoamide dehy 97.9 0.00015 3.3E-09 73.2 13.2 53 207-260 213-268 (460)
321 TIGR03169 Nterm_to_SelD pyridi 97.9 0.0002 4.3E-09 69.9 13.3 59 208-270 195-253 (364)
322 COG1148 HdrA Heterodisulfide r 97.9 1.7E-05 3.7E-10 75.9 4.8 40 57-98 124-163 (622)
323 PTZ00153 lipoamide dehydrogena 97.8 0.00017 3.7E-09 74.9 12.3 34 58-93 313-346 (659)
324 PF01593 Amino_oxidase: Flavin 97.8 5.2E-05 1.1E-09 75.8 8.4 53 208-260 213-265 (450)
325 PRK10262 thioredoxin reductase 97.8 0.00033 7.1E-09 67.1 12.9 33 58-92 147-179 (321)
326 COG0493 GltD NADPH-dependent g 97.8 2.8E-05 6.1E-10 76.8 5.5 36 58-95 124-159 (457)
327 PRK13984 putative oxidoreducta 97.8 7E-05 1.5E-09 78.2 8.8 38 56-95 282-319 (604)
328 TIGR03140 AhpF alkyl hydropero 97.8 0.00027 5.9E-09 72.1 12.4 33 58-92 353-385 (515)
329 PRK12771 putative glutamate sy 97.7 7.6E-05 1.6E-09 77.1 7.9 38 56-95 136-173 (564)
330 PRK12770 putative glutamate sy 97.7 0.00022 4.8E-09 69.2 10.2 32 58-91 173-205 (352)
331 KOG4716|consensus 97.7 0.00097 2.1E-08 61.2 13.2 35 55-91 17-51 (503)
332 TIGR01816 sdhA_forward succina 97.7 0.00098 2.1E-08 68.8 14.9 59 203-261 118-182 (565)
333 PRK05335 tRNA (uracil-5-)-meth 97.7 4.8E-05 1E-09 73.7 5.0 35 58-94 3-37 (436)
334 TIGR03315 Se_ygfK putative sel 97.6 0.0042 9.2E-08 67.2 19.2 33 8-42 536-568 (1012)
335 TIGR01316 gltA glutamate synth 97.6 0.00097 2.1E-08 66.9 12.6 32 58-91 273-304 (449)
336 PF13434 K_oxygenase: L-lysine 97.5 0.0016 3.4E-08 62.5 12.7 37 56-92 189-225 (341)
337 COG0492 TrxB Thioredoxin reduc 97.5 0.0096 2.1E-07 56.0 17.6 60 210-269 184-248 (305)
338 PRK11749 dihydropyrimidine deh 97.4 0.0014 3E-08 66.0 11.4 32 58-91 274-306 (457)
339 PF00996 GDI: GDP dissociation 97.4 0.0011 2.4E-08 65.0 10.1 45 55-101 2-46 (438)
340 TIGR01372 soxA sarcosine oxida 97.4 0.0018 3.9E-08 71.2 12.7 61 210-270 357-422 (985)
341 KOG0405|consensus 97.4 0.0033 7.2E-08 58.1 11.9 54 206-259 232-286 (478)
342 PTZ00188 adrenodoxin reductase 97.3 0.00034 7.4E-09 69.1 5.7 38 56-95 38-76 (506)
343 PRK15317 alkyl hydroperoxide r 97.3 0.0021 4.5E-08 65.8 11.3 33 58-92 352-384 (517)
344 PRK06567 putative bifunctional 97.2 0.0004 8.6E-09 73.8 5.5 35 56-92 382-416 (1028)
345 PRK12810 gltD glutamate syntha 97.2 0.0029 6.2E-08 64.0 11.5 60 211-270 336-412 (471)
346 KOG3855|consensus 97.2 0.044 9.5E-07 52.2 17.7 56 215-271 164-227 (481)
347 COG1206 Gid NAD(FAD)-utilizing 97.2 0.0069 1.5E-07 55.7 11.9 33 58-92 4-36 (439)
348 KOG1800|consensus 97.2 0.0006 1.3E-08 63.7 5.1 39 56-94 19-57 (468)
349 PRK12831 putative oxidoreducta 97.1 0.0045 9.8E-08 62.3 11.8 32 58-91 282-313 (464)
350 COG3634 AhpF Alkyl hydroperoxi 97.1 0.0013 2.7E-08 60.7 6.2 33 57-91 354-386 (520)
351 PLN02172 flavin-containing mon 97.0 0.0013 2.8E-08 65.9 6.6 34 56-91 203-236 (461)
352 COG3486 IucD Lysine/ornithine 96.9 0.006 1.3E-07 57.9 9.7 38 56-94 4-41 (436)
353 PRK12814 putative NADPH-depend 96.9 0.0064 1.4E-07 63.9 11.1 32 58-91 324-356 (652)
354 PRK09853 putative selenate red 96.8 0.015 3.3E-07 62.9 12.9 33 58-91 669-702 (1019)
355 TIGR03143 AhpF_homolog putativ 96.8 0.015 3.2E-07 60.1 11.8 33 58-92 144-176 (555)
356 KOG3851|consensus 96.7 0.016 3.5E-07 53.1 10.0 37 55-91 37-73 (446)
357 KOG1238|consensus 96.6 0.0022 4.7E-08 64.6 4.5 40 54-94 54-93 (623)
358 KOG2495|consensus 96.5 0.013 2.8E-07 56.0 8.3 60 206-267 275-336 (491)
359 KOG1336|consensus 96.4 0.016 3.5E-07 56.2 8.9 44 213-258 136-179 (478)
360 PRK12778 putative bifunctional 96.4 0.026 5.7E-07 60.6 11.2 32 58-91 571-603 (752)
361 PRK12769 putative oxidoreducta 96.3 0.027 5.8E-07 59.5 10.9 31 59-91 470-501 (654)
362 PLN02852 ferredoxin-NADP+ redu 96.2 0.29 6.4E-06 49.3 16.6 36 8-43 25-60 (491)
363 TIGR01318 gltD_gamma_fam gluta 96.1 0.055 1.2E-06 54.6 11.5 32 58-91 283-315 (467)
364 PRK12779 putative bifunctional 96.1 0.05 1.1E-06 59.5 11.6 32 58-91 448-479 (944)
365 KOG0399|consensus 96.0 0.0075 1.6E-07 63.9 4.4 37 57-95 1785-1821(2142)
366 COG2072 TrkA Predicted flavopr 95.9 0.071 1.5E-06 53.3 10.9 33 58-92 176-208 (443)
367 KOG2665|consensus 95.7 0.01 2.3E-07 54.2 3.7 46 6-51 45-90 (453)
368 KOG1439|consensus 95.4 0.17 3.7E-06 48.1 10.6 44 56-101 3-46 (440)
369 PF01210 NAD_Gly3P_dh_N: NAD-d 95.4 0.022 4.7E-07 48.1 4.3 31 59-91 1-31 (157)
370 PRK13984 putative oxidoreducta 95.4 0.11 2.5E-06 54.3 10.6 22 58-79 419-440 (604)
371 TIGR03385 CoA_CoA_reduc CoA-di 95.3 0.074 1.6E-06 53.1 8.7 47 214-260 54-103 (427)
372 PF02737 3HCDH_N: 3-hydroxyacy 95.2 0.028 6E-07 48.6 4.6 32 59-92 1-32 (180)
373 KOG2755|consensus 95.1 0.019 4.2E-07 51.1 3.1 33 60-92 2-34 (334)
374 COG1251 NirB NAD(P)H-nitrite r 95.0 0.15 3.2E-06 52.5 9.6 47 212-260 67-113 (793)
375 PF02558 ApbA: Ketopantoate re 95.0 0.036 7.7E-07 46.4 4.5 30 60-91 1-30 (151)
376 COG0446 HcaD Uncharacterized N 94.9 0.13 2.7E-06 51.0 9.1 43 215-260 64-106 (415)
377 cd05292 LDH_2 A subgroup of L- 94.9 0.11 2.3E-06 49.3 8.0 34 59-92 2-35 (308)
378 KOG0029|consensus 94.9 0.47 1E-05 48.0 12.9 39 6-46 12-50 (501)
379 PF03721 UDPG_MGDP_dh_N: UDP-g 94.9 0.032 7E-07 48.4 4.1 33 58-92 1-33 (185)
380 KOG1346|consensus 94.9 0.1 2.2E-06 49.7 7.4 61 193-260 251-311 (659)
381 PRK12809 putative oxidoreducta 94.8 0.22 4.8E-06 52.4 10.8 32 58-91 452-484 (639)
382 PRK14727 putative mercuric red 94.8 0.051 1.1E-06 55.1 5.8 32 58-91 189-220 (479)
383 PF00732 GMC_oxred_N: GMC oxid 94.7 0.037 7.9E-07 52.2 4.2 36 10-46 1-36 (296)
384 COG1249 Lpd Pyruvate/2-oxoglut 94.6 0.044 9.5E-07 54.5 4.7 35 58-94 174-208 (454)
385 COG0579 Predicted dehydrogenas 94.5 0.059 1.3E-06 52.8 5.3 46 7-52 1-46 (429)
386 COG4716 Myosin-crossreactive a 94.5 0.2 4.3E-06 47.3 8.3 57 203-259 226-291 (587)
387 TIGR03467 HpnE squalene-associ 94.5 0.084 1.8E-06 52.4 6.5 53 207-259 200-253 (419)
388 PRK12775 putative trifunctiona 94.4 0.34 7.4E-06 53.6 11.4 32 58-91 572-604 (1006)
389 PRK07251 pyridine nucleotide-d 94.1 0.071 1.5E-06 53.5 5.1 35 58-94 158-192 (438)
390 PF00743 FMO-like: Flavin-bind 94.1 0.15 3.3E-06 52.1 7.3 34 56-91 182-215 (531)
391 PRK13339 malate:quinone oxidor 94.0 0.09 1.9E-06 53.1 5.5 47 6-52 3-49 (497)
392 COG0569 TrkA K+ transport syst 94.0 0.073 1.6E-06 47.8 4.4 32 59-92 2-33 (225)
393 PRK06129 3-hydroxyacyl-CoA deh 94.0 0.069 1.5E-06 50.7 4.4 32 59-92 4-35 (308)
394 KOG4405|consensus 94.0 0.06 1.3E-06 51.1 3.8 49 54-104 5-53 (547)
395 TIGR01350 lipoamide_DH dihydro 93.7 0.081 1.8E-06 53.4 4.7 35 58-94 171-205 (461)
396 TIGR02053 MerA mercuric reduct 93.7 0.083 1.8E-06 53.4 4.7 35 58-94 167-201 (463)
397 PRK12771 putative glutamate sy 93.7 0.6 1.3E-05 48.5 11.1 52 214-265 315-386 (564)
398 PRK05708 2-dehydropantoate 2-r 93.6 0.097 2.1E-06 49.6 4.6 32 58-91 3-34 (305)
399 PRK01438 murD UDP-N-acetylmura 93.6 0.088 1.9E-06 53.5 4.6 32 58-91 17-48 (480)
400 KOG2495|consensus 93.5 0.65 1.4E-05 44.8 9.7 36 55-92 53-88 (491)
401 PRK06249 2-dehydropantoate 2-r 93.5 0.12 2.6E-06 49.1 5.2 34 57-92 5-38 (313)
402 PRK06416 dihydrolipoamide dehy 93.4 0.1 2.3E-06 52.7 4.8 35 58-94 173-207 (462)
403 COG3486 IucD Lysine/ornithine 93.3 2.2 4.7E-05 41.2 12.9 43 217-259 291-339 (436)
404 PF13241 NAD_binding_7: Putati 93.2 0.11 2.4E-06 40.2 3.7 34 56-91 6-39 (103)
405 PRK02705 murD UDP-N-acetylmura 93.2 0.11 2.3E-06 52.5 4.5 32 59-92 2-33 (459)
406 PRK07819 3-hydroxybutyryl-CoA 93.2 0.15 3.3E-06 47.7 5.1 33 58-92 6-38 (286)
407 PF13738 Pyr_redox_3: Pyridine 93.1 0.12 2.6E-06 45.5 4.3 35 56-92 166-200 (203)
408 COG0686 Ald Alanine dehydrogen 93.1 0.22 4.8E-06 45.8 5.8 34 56-91 167-200 (371)
409 TIGR02354 thiF_fam2 thiamine b 93.1 0.15 3.2E-06 44.9 4.7 34 56-91 20-54 (200)
410 PRK05249 soluble pyridine nucl 93.1 0.12 2.7E-06 52.1 4.8 35 58-94 176-210 (461)
411 PRK08293 3-hydroxybutyryl-CoA 93.0 0.13 2.9E-06 48.2 4.6 32 58-91 4-35 (287)
412 PRK07066 3-hydroxybutyryl-CoA 93.0 0.14 3E-06 48.6 4.6 33 58-92 8-40 (321)
413 TIGR01320 mal_quin_oxido malat 93.0 0.14 3E-06 51.8 4.9 41 10-50 1-41 (483)
414 PRK11728 hydroxyglutarate oxid 92.9 0.18 3.8E-06 49.8 5.5 37 9-45 2-38 (393)
415 PF01488 Shikimate_DH: Shikima 92.8 0.2 4.3E-06 41.0 4.8 34 56-91 11-45 (135)
416 PRK09260 3-hydroxybutyryl-CoA 92.8 0.14 3E-06 48.1 4.4 32 59-92 3-34 (288)
417 PRK09424 pntA NAD(P) transhydr 92.8 0.39 8.6E-06 48.4 7.7 73 9-92 126-198 (509)
418 PRK02106 choline dehydrogenase 92.8 0.16 3.5E-06 52.6 5.3 38 7-45 3-40 (560)
419 TIGR01470 cysG_Nterm siroheme 92.7 0.17 3.7E-06 44.7 4.6 32 58-91 10-41 (205)
420 PRK07530 3-hydroxybutyryl-CoA 92.7 0.19 4E-06 47.4 5.1 32 58-91 5-36 (292)
421 PLN02353 probable UDP-glucose 92.6 0.18 3.8E-06 50.6 5.0 35 58-92 2-36 (473)
422 PF00056 Ldh_1_N: lactate/mala 92.6 0.25 5.5E-06 40.7 5.1 33 59-91 2-35 (141)
423 PF01262 AlaDh_PNT_C: Alanine 92.5 0.21 4.6E-06 42.6 4.8 34 56-91 19-52 (168)
424 COG1648 CysG Siroheme synthase 92.5 1.2 2.7E-05 39.3 9.6 33 57-91 12-44 (210)
425 PLN02785 Protein HOTHEAD 92.4 0.19 4.1E-06 52.1 5.1 36 7-45 53-88 (587)
426 PRK06719 precorrin-2 dehydroge 92.4 0.23 5.1E-06 41.7 4.8 33 57-91 13-45 (157)
427 PRK05257 malate:quinone oxidor 92.4 0.2 4.4E-06 50.8 5.1 41 7-47 3-43 (494)
428 COG1004 Ugd Predicted UDP-gluc 92.3 0.19 4.1E-06 48.1 4.4 32 58-91 1-32 (414)
429 PRK06718 precorrin-2 dehydroge 92.3 0.23 5E-06 43.7 4.8 33 57-91 10-42 (202)
430 PRK12921 2-dehydropantoate 2-r 92.1 0.18 4E-06 47.7 4.4 31 59-91 2-32 (305)
431 TIGR01763 MalateDH_bact malate 92.1 0.21 4.5E-06 47.2 4.6 32 58-91 2-34 (305)
432 PRK06035 3-hydroxyacyl-CoA deh 92.0 0.21 4.6E-06 46.9 4.6 32 59-92 5-36 (291)
433 COG5044 MRS6 RAB proteins gera 92.0 0.29 6.3E-06 46.2 5.2 41 56-98 5-45 (434)
434 PRK08229 2-dehydropantoate 2-r 91.9 0.21 4.6E-06 48.1 4.6 32 58-91 3-34 (341)
435 PRK06522 2-dehydropantoate 2-r 91.9 0.22 4.7E-06 47.1 4.6 31 59-91 2-32 (304)
436 PRK08010 pyridine nucleotide-d 91.8 0.23 5.1E-06 49.8 4.9 35 58-94 159-193 (441)
437 PRK06116 glutathione reductase 91.7 0.24 5.1E-06 49.9 4.8 34 58-93 168-201 (450)
438 PF00899 ThiF: ThiF family; I 91.7 0.31 6.7E-06 39.9 4.7 35 57-94 2-37 (135)
439 PRK05808 3-hydroxybutyryl-CoA 91.5 0.24 5.2E-06 46.4 4.4 32 59-92 5-36 (282)
440 PRK14106 murD UDP-N-acetylmura 91.5 0.26 5.5E-06 49.7 4.9 33 57-91 5-37 (450)
441 COG1748 LYS9 Saccharopine dehy 91.5 0.27 5.8E-06 47.6 4.6 32 58-91 2-34 (389)
442 PRK07688 thiamine/molybdopteri 91.3 0.31 6.6E-06 46.8 4.9 34 56-91 23-57 (339)
443 cd01080 NAD_bind_m-THF_DH_Cycl 91.3 0.37 8E-06 41.0 4.8 34 56-91 43-77 (168)
444 COG0562 Glf UDP-galactopyranos 91.2 0.58 1.3E-05 43.4 6.2 35 9-45 1-35 (374)
445 PRK14618 NAD(P)H-dependent gly 91.2 0.34 7.3E-06 46.5 5.1 32 58-91 5-36 (328)
446 PF02254 TrkA_N: TrkA-N domain 91.2 0.39 8.5E-06 37.9 4.7 31 60-92 1-31 (116)
447 PLN02545 3-hydroxybutyryl-CoA 91.2 0.34 7.4E-06 45.6 5.1 32 58-91 5-36 (295)
448 PRK15116 sulfur acceptor prote 91.2 0.35 7.6E-06 44.4 4.9 34 56-91 29-63 (268)
449 PTZ00383 malate:quinone oxidor 91.1 0.39 8.5E-06 48.6 5.6 40 7-46 43-82 (497)
450 PRK06130 3-hydroxybutyryl-CoA 91.0 0.36 7.7E-06 45.9 5.1 32 58-91 5-36 (311)
451 TIGR00518 alaDH alanine dehydr 91.0 0.34 7.3E-06 47.2 4.9 33 57-91 167-199 (370)
452 PRK13748 putative mercuric red 91.0 0.28 6.1E-06 50.9 4.6 32 58-91 271-302 (561)
453 COG0644 FixC Dehydrogenases (f 91.0 0.31 6.7E-06 48.1 4.7 37 8-46 2-38 (396)
454 PTZ00052 thioredoxin reductase 91.0 0.27 5.8E-06 50.1 4.4 31 59-91 184-214 (499)
455 PTZ00082 L-lactate dehydrogena 90.9 0.44 9.6E-06 45.3 5.5 35 56-92 5-40 (321)
456 PLN00093 geranylgeranyl diphos 90.8 0.43 9.3E-06 47.9 5.6 37 6-44 36-72 (450)
457 PRK14694 putative mercuric red 90.7 0.32 7E-06 49.2 4.7 32 58-91 179-210 (468)
458 PRK12475 thiamine/molybdopteri 90.6 0.38 8.2E-06 46.1 4.8 34 56-91 23-57 (338)
459 PRK14620 NAD(P)H-dependent gly 90.5 0.37 8E-06 46.2 4.6 31 59-91 2-32 (326)
460 TIGR02356 adenyl_thiF thiazole 90.4 0.46 1E-05 41.9 4.8 34 56-91 20-54 (202)
461 COG2303 BetA Choline dehydroge 90.3 0.38 8.3E-06 49.4 4.8 37 7-45 5-41 (542)
462 PRK07333 2-octaprenyl-6-methox 90.3 0.38 8.2E-06 47.6 4.7 36 9-44 1-36 (403)
463 PRK14619 NAD(P)H-dependent gly 90.2 0.45 9.7E-06 45.2 4.9 33 57-91 4-36 (308)
464 KOG2304|consensus 90.2 0.35 7.6E-06 42.3 3.7 35 56-92 10-44 (298)
465 PRK11259 solA N-methyltryptoph 90.1 0.41 8.9E-06 46.8 4.8 37 7-45 1-37 (376)
466 cd01487 E1_ThiF_like E1_ThiF_l 90.1 0.46 1E-05 40.8 4.5 31 59-91 1-32 (174)
467 PRK04148 hypothetical protein; 90.1 0.35 7.6E-06 39.1 3.4 32 58-92 18-49 (134)
468 PRK00094 gpsA NAD(P)H-dependen 90.0 0.45 9.8E-06 45.5 4.8 31 59-91 3-33 (325)
469 TIGR00561 pntA NAD(P) transhyd 89.9 0.87 1.9E-05 45.9 6.7 72 9-91 125-196 (511)
470 TIGR03026 NDP-sugDHase nucleot 89.9 0.39 8.5E-06 47.6 4.4 32 59-92 2-33 (411)
471 PRK11064 wecC UDP-N-acetyl-D-m 89.8 0.46 1E-05 47.1 4.8 33 58-92 4-36 (415)
472 cd05293 LDH_1 A subgroup of L- 89.7 0.6 1.3E-05 44.2 5.3 36 57-92 3-38 (312)
473 PF03446 NAD_binding_2: NAD bi 89.6 0.59 1.3E-05 39.6 4.7 32 58-91 2-33 (163)
474 cd01483 E1_enzyme_family Super 89.6 0.6 1.3E-05 38.5 4.6 31 59-91 1-32 (143)
475 PRK07417 arogenate dehydrogena 89.5 0.47 1E-05 44.3 4.4 31 59-91 2-32 (279)
476 PRK12549 shikimate 5-dehydroge 89.5 0.5 1.1E-05 44.1 4.5 33 57-91 127-160 (284)
477 PRK08644 thiamine biosynthesis 89.4 0.57 1.2E-05 41.6 4.6 34 56-91 27-61 (212)
478 cd00401 AdoHcyase S-adenosyl-L 89.4 0.51 1.1E-05 46.3 4.6 34 57-92 202-235 (413)
479 PRK00066 ldh L-lactate dehydro 89.1 0.74 1.6E-05 43.7 5.4 34 56-91 5-40 (315)
480 PRK13369 glycerol-3-phosphate 89.0 0.65 1.4E-05 47.5 5.3 36 7-44 4-39 (502)
481 TIGR02279 PaaC-3OHAcCoADH 3-hy 89.0 0.52 1.1E-05 47.8 4.5 33 58-92 6-38 (503)
482 PRK06223 malate dehydrogenase; 88.9 0.6 1.3E-05 44.3 4.7 32 58-91 3-35 (307)
483 cd01075 NAD_bind_Leu_Phe_Val_D 88.9 0.71 1.5E-05 40.6 4.8 33 57-91 28-60 (200)
484 PRK10015 oxidoreductase; Provi 88.7 0.69 1.5E-05 46.2 5.2 36 8-45 4-39 (429)
485 PRK12266 glpD glycerol-3-phosp 88.6 0.71 1.5E-05 47.2 5.3 36 7-44 4-39 (508)
486 PRK06567 putative bifunctional 88.6 2.5 5.3E-05 46.1 9.3 33 58-90 551-584 (1028)
487 PRK07531 bifunctional 3-hydrox 88.6 0.66 1.4E-05 47.2 5.0 32 59-92 6-37 (495)
488 cd05311 NAD_bind_2_malic_enz N 88.6 0.65 1.4E-05 41.8 4.4 33 57-91 25-60 (226)
489 PRK08773 2-octaprenyl-3-methyl 88.4 0.74 1.6E-05 45.3 5.1 36 7-44 4-39 (392)
490 COG1893 ApbA Ketopantoate redu 88.4 0.63 1.4E-05 44.0 4.4 32 59-92 2-33 (307)
491 cd01339 LDH-like_MDH L-lactate 88.3 0.57 1.2E-05 44.2 4.1 31 60-92 1-32 (300)
492 TIGR02355 moeB molybdopterin s 88.3 0.78 1.7E-05 41.6 4.8 35 56-91 23-57 (240)
493 PRK08268 3-hydroxy-acyl-CoA de 88.2 0.64 1.4E-05 47.3 4.6 33 58-92 8-40 (507)
494 COG4529 Uncharacterized protei 88.1 15 0.00034 36.4 13.6 36 57-92 196-231 (474)
495 cd05291 HicDH_like L-2-hydroxy 88.0 0.73 1.6E-05 43.6 4.6 34 59-92 2-35 (306)
496 KOG4716|consensus 88.0 1 2.2E-05 42.2 5.2 63 206-270 240-308 (503)
497 PF13478 XdhC_C: XdhC Rossmann 87.8 0.74 1.6E-05 37.6 3.9 31 60-92 1-31 (136)
498 TIGR01915 npdG NADPH-dependent 87.7 0.86 1.9E-05 40.8 4.7 31 59-91 2-33 (219)
499 PRK11730 fadB multifunctional 87.6 0.65 1.4E-05 49.5 4.4 33 58-92 314-346 (715)
500 cd05191 NAD_bind_amino_acid_DH 87.6 1.5 3.3E-05 32.5 5.2 33 57-90 23-55 (86)
No 1
>KOG2665|consensus
Probab=100.00 E-value=2.4e-48 Score=340.97 Aligned_cols=370 Identities=55% Similarity=0.963 Sum_probs=349.8
Q ss_pred CCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHH
Q psy7710 55 PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFD 134 (473)
Q Consensus 55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (473)
..++|+||||||+.|++.|.+|.-+.|+.+|.|+|+...++-..|++|+|.+|+|++|.|+++++++|.++.++.+++++
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~yc~ 125 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEYCD 125 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHHHHHHhh
Confidence 46799999999999999999999998999999999998999999999999999999999999999999999999999999
Q ss_pred hcCCCCcccCeEEEEeCc-ChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHH
Q psy7710 135 KRNIPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEE 213 (473)
Q Consensus 135 ~~~~~~~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 213 (473)
+..+++.+.|.+.++... +...++.+++...++++++.++++..++.+++|......++++|..|.+|...++..+.+.
T Consensus 126 e~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls~~ed 205 (453)
T KOG2665|consen 126 EKKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSPHTGIVDWGSVTLSFGED 205 (453)
T ss_pred hcCCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhcCCCcceeehHHHHHHHHHH
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCcEEEeCceEEEEEEcCCe-----EEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEeCcC
Q psy7710 214 FCELGGEIRLNQQVESFKENPES-----VTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPA 288 (473)
Q Consensus 214 ~~~~Gv~i~~~~~V~~i~~~~~~-----v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~~~~ 288 (473)
++..|.++.+|-++..+..++.. +.|....+++++++.||-|+|..++.+....|++.++.+.|.+|.++.+.+.
T Consensus 206 F~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~aa~sgc~~dPriVpfrG~ylll~~e 285 (453)
T KOG2665|consen 206 FDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRCAALSGCELDPRIVPFRGEYLLLKPE 285 (453)
T ss_pred HHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHhHHHHHhCCCCCCeeeeccchhhhcChH
Confidence 99999999999999999876542 4566666789999999999999999999999999999999999999999999
Q ss_pred cccCcccccccCCCCCCCccEEEEecCCCCeEEECCCccccccccCcccccchhHHHhhhccCCcchhccchhhhhchHH
Q psy7710 289 KQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKE 368 (473)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (473)
+...+++.+||.|++++|+.|+++.|+.+|.+++|+.+...+++++|.+.++++.++.+.+++.++.++.++++.+++.+
T Consensus 286 k~h~vk~niyPvpd~RFpflGvhftPrm~g~iwlgpnavLa~kregy~~g~i~~~~~~e~i~~sg~~k~~~k~f~ygv~e 365 (453)
T KOG2665|consen 286 KLHLVKGNIYPVPDPRFPFLGVHFTPRMDGSIWLGPNAVLAVKREGYLNGDISFGDLVEWIEYSGDTKLASKKFDYGVNE 365 (453)
T ss_pred HhccccCceeeCCCCCCccccccccCcCCCceecCCCceEEEEEEeeccccccccchhhheecCchHHHHHhhcCcccch
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcchhHHHHHhhcccCCCCCCcccCCCeeceEeeCCCCccccccceeeeecCC
Q psy7710 369 MIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFGVKAIHSPH 425 (473)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~t~d~~p~~g~~~~~g~~~~ 425 (473)
+....|....+..+++++|+|.+.+|.+..+|+|.+.++.||..+++|.+..| .+|
T Consensus 366 ~~k~~f~~aqvk~lqkyiPdlk~~di~rGpaGvRaqald~~gnlv~DFVfd~g-~g~ 421 (453)
T KOG2665|consen 366 MYKEKFIAAQVKELQKYIPDLKDSDIERGPAGVRAQALDGDGNLVDDFVFDGG-EGH 421 (453)
T ss_pred HhhhhhhhhhhHHHHHhCccccccccccCcccccchhccCCCCCchheEEecC-ccc
Confidence 99999999999999999999999999999999998888999998999988876 444
No 2
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=100.00 E-value=2.4e-46 Score=367.77 Aligned_cols=387 Identities=47% Similarity=0.781 Sum_probs=324.5
Q ss_pred cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHhc
Q psy7710 57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDKR 136 (473)
Q Consensus 57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (473)
++||+|||||++|+++|++|+++.+|.+|+|+||+..++.++|++|.|++++++.+.+...+.+++..+.+.|.++.++.
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~aS~~~~g~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 81 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKAFCDQH 81 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcccccccccCcceEccccccCcHHHHHHHHHHHHHHHHHHHHHc
Confidence 47999999999999999999998678999999998668899999999999998766676667889999999999999999
Q ss_pred CCCCcccCeEEEEeCc-ChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHHH
Q psy7710 137 NIPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFC 215 (473)
Q Consensus 137 ~~~~~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 215 (473)
++++.++|.+.++.++ +.+.+...++.....|. ..++++.+++.+++|.+...++++.+.++++++..+++.|.+.++
T Consensus 82 ~~~~~~~G~l~~~~~~~~~~~l~~~~~~~~~~g~-~~~~l~~~el~~~~P~l~~~~al~~p~~g~vd~~~l~~aL~~~~~ 160 (393)
T PRK11728 82 GIPYEECGKLLVATSELELERMEALYERARANGI-EVERLDAEELREREPNIRGLGAIFVPSTGIVDYRAVAEAMAELIQ 160 (393)
T ss_pred CCCcccCCEEEEEcCHHHHHHHHHHHHHHHHCCC-cEEEeCHHHHHHhCCCccccceEEcCCceEECHHHHHHHHHHHHH
Confidence 9999999999999887 78888888888888888 689999999999999887788999999999999999999999999
Q ss_pred HcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEeCcCcccCccc
Q psy7710 216 ELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRG 295 (473)
Q Consensus 216 ~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~~~~~~~~~~~ 295 (473)
+.|++++++++|.++..+++++.|++.++ +++||.||+|+|.|+..+++.+|++.+.++.|+|||++.++......+.+
T Consensus 161 ~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s~~l~~~~g~~~~~~v~p~rGq~~~~~~~~~~~~~~ 239 (393)
T PRK11728 161 ARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMSDRLAKMAGLEPDFRIVPFRGEYYRLAPEKNQLVNH 239 (393)
T ss_pred hCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcchHHHHHHhCCCCCCceEEeeeEEEEeccccccccCC
Confidence 99999999999999998888888888887 89999999999999999999999876678999999999998664445667
Q ss_pred ccccCCCCCCCccEEEEecCCCCeEEECCCccccccccCcccccchhHHHhhhccCCcchhccchhhhhchHHHHhhhcc
Q psy7710 296 NIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFP 375 (473)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (473)
.+|+.|+...+..++|++|+.+|++++|++.....++++|++...+..++.+..+..+++.+..+++.+++.+++.+...
T Consensus 240 ~v~~~p~~~~~~~g~~~~p~~~G~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (393)
T PRK11728 240 LIYPVPDPAFPFLGVHLTRMIDGSVTVGPNAVLAFKREGYRKRDFSLRDLLEILTYPGFWKLAQKHWRSGLGEMKNSLSK 319 (393)
T ss_pred ceecCCCCCCCcceEEeecCCCCCEEECCCcceehhhcCccccCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhH
Confidence 78888887777778999999999999999766555556666543455566677777788777767788888877555556
Q ss_pred hhHHHHHhhcccCCCCCCcccCCCeeceEeeCCCCccccccceeeeecC-C-ccccchH-HHHHHHHHHHHhh
Q psy7710 376 SMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFGVKAIHSP-H-TGIVDWG-LVTRVMGEEFCEL 445 (473)
Q Consensus 376 ~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~t~d~~p~~g~~~~~g~~~-~-~gi~~~~-~~a~~~g~~~~~~ 445 (473)
...++.+.+++|.|...++.+.|+|+||...++|+.|+.+|+|...... | .||-+.| ..++.+|+.+++.
T Consensus 320 ~~~~~~a~~~~P~l~~~~i~~~~~G~Rp~~~~~d~~~~~d~~i~~~~~~~~~~~~~spg~t~s~~ia~~v~~~ 392 (393)
T PRK11728 320 SGYLRLVQKYCPSLTLSDLQPYPAGVRAQAVSRDGKLVDDFLFVETPRSLHVCNAPSPAATSSLPIGEHIVSK 392 (393)
T ss_pred HHHHHHHHHhCCCCCHHHcccCCCceeeeeeCCCCCccCceEEecCCCEEEEcCCCCchHHccHHHHHHHHhh
Confidence 6778999999999999999999999999555899999999988753110 0 1111222 4466777777653
No 3
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=100.00 E-value=2.1e-41 Score=322.40 Aligned_cols=274 Identities=44% Similarity=0.749 Sum_probs=257.6
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHh
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDK 135 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (473)
.++||+|||||++|+++|++|++..|+++|+|+||.+.++..+|++|+|.+|.+.+|.++++..+++..+.+.+.+++++
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq 81 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ 81 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999976699999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccCeEEEEeCc-ChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcc--cceeEecCCccceeHHHHHHHHHH
Q psy7710 136 RNIPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCK--GVKAIHSPNTGIVDWGLVTRVMGE 212 (473)
Q Consensus 136 ~~~~~~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~~~~~~l~~ 212 (473)
++++|..+|.+.+++++ +.+.++.+++.+.+.++...+.++++++.+++|.+. ..++++.|..+.+|+..++..|.+
T Consensus 82 ~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~e 161 (429)
T COG0579 82 LGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALAE 161 (429)
T ss_pred hCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHHH
Confidence 99999999999999999 999999999999999995589999999999999998 589999999999999999999999
Q ss_pred HHHHcCcEEEeCceEEEEEEcCC-eEEEEcCCCcE-EEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEeCcCcc
Q psy7710 213 EFCELGGEIRLNQQVESFKENPE-SVTISTKQGDH-LESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQ 290 (473)
Q Consensus 213 ~~~~~Gv~i~~~~~V~~i~~~~~-~v~v~~~~g~~-i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~~~~~~ 290 (473)
.++++|+++++|++|+.|++.++ .+.+.+++|++ ++|+.||+|+|.+|..|++++|++.+..+.|++|+++.+++...
T Consensus 162 ~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g~~~~~~~~P~~G~y~~~~~~~~ 241 (429)
T COG0579 162 EAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAGIPEDFKIFPVRGEYLVLDNEVK 241 (429)
T ss_pred HHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHHhCCCcccccCccceEEEEEccccc
Confidence 99999999999999999999887 56678888855 99999999999999999999999977889999999999998666
Q ss_pred cCcccccccCCCCCCCccEEEEecCCCCeEEECCCcccc
Q psy7710 291 HLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLA 329 (473)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~ 329 (473)
..+++.+|+.|.+..|+.++++.|+.||.+++|+++.+.
T Consensus 242 ~~~~~~Iy~~p~~~~p~~gV~~~~~idG~~l~GP~A~~~ 280 (429)
T COG0579 242 ALLRHKIYPVPNPGLPGLGVHHTPTIDGSLLFGPNALDS 280 (429)
T ss_pred ccccceeecCCCCCCCCCcceeecccCCeEEECCCcccc
Confidence 678889999999999999999999999999999998876
No 4
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=100.00 E-value=2.9e-40 Score=326.88 Aligned_cols=387 Identities=22% Similarity=0.327 Sum_probs=297.6
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCccc--CCCcceEEeeccCC-CchhHHHHHHHhHHHHHHH
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQT--GHNSGVVHAGIYYK-PGTLKAKLCVEGMNLAYEY 132 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s--~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 132 (473)
..+||+|||||++|+++|++|++..++.+|+||||.+.++.++| .+|++.+|.+..+. ....+.+++..+.+.+.++
T Consensus 44 ~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~~a~~aS~~~nnsg~iHag~~~~~y~~~kA~~~~~~~~~~~~~ 123 (497)
T PTZ00383 44 DVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSDFALVASHGKNNSQTIHCGDIETNYTLEKARKVKRQADMLRNY 123 (497)
T ss_pred CcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcchhhcccCCCCCCccccceeehhcCCHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999754579999999866776666 55777777765321 2234567778888888888
Q ss_pred HHhcCC-----CCcccCeEEEEeCc-ChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcc----------cceeEecC
Q psy7710 133 FDKRNI-----PYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCK----------GVKAIHSP 196 (473)
Q Consensus 133 ~~~~~~-----~~~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~----------~~~~~~~~ 196 (473)
++++.. .+.++|.+.++.++ +.+.+++.++.+++.+. ++++++++++.+++|.+. ..++++.|
T Consensus 124 ~~~L~~~~~~~~~~~~G~l~va~~e~e~~~L~~~~~~~~~~~~-~~e~ld~~el~e~eP~v~~~~~~~~~~e~~~Al~~p 202 (497)
T PTZ00383 124 LTKLPPSERDSIIFKMQKMVLGVGEKECEFLEKRYPVFKELFP-SMQLLDKKEIHRVEPRVVLKNNHTLREEPLAALYVP 202 (497)
T ss_pred HHHhcccccccceeeCCEEEEEECHHHHHHHHHHHHHHHccCC-CeEEECHHHHHHhCcccccCccccccccceEEEEeC
Confidence 876432 35678999999888 88889888888887665 789999999999999863 36889999
Q ss_pred Cc-cceeHHHHHHHHHHHHHH----cC--cEEEeCceEEEEEEc-CCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcC
Q psy7710 197 NT-GIVDWGLVTRVMGEEFCE----LG--GEIRLNQQVESFKEN-PESVTISTKQGDHLESSYALVCAGLQADEMALKSG 268 (473)
Q Consensus 197 ~~-~~~~~~~~~~~l~~~~~~----~G--v~i~~~~~V~~i~~~-~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g 268 (473)
.+ +.+||..++..|.+.+++ +| ++|+++++|++|..+ ++.+.|+|.+| +++||.||+|+|+|+..|++++|
T Consensus 203 ~~g~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~~La~~~G 281 (497)
T PTZ00383 203 NELTTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSLLFAQKMG 281 (497)
T ss_pred CCCEEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHHHHHHHhC
Confidence 87 589999999999999998 78 789999999999987 55678999988 89999999999999999999999
Q ss_pred CCCCCceeeeeeEEEEeCcCcccCcccccccCCCCCCCccEEEEecCC--CCeEEECCCccccccccCcccccchhHHHh
Q psy7710 269 CSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRM--DGSVWLGPNAVLAFKKEGYRWRDFSVRELF 346 (473)
Q Consensus 269 ~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~ 346 (473)
+..+.++.|++|+++.+.. .+++.+|+.+++..|+.++|+.|+. +|.+++|+++.+.+.++.|+..+. .|++
T Consensus 282 i~~~~~i~Pv~G~~~~~~~----~~~~kVY~v~~p~~Pf~~vH~d~~i~~~g~~~~GP~A~~~~~~e~y~~~~~--~d~~ 355 (497)
T PTZ00383 282 YGLEYSCLPVAGSFYFSGN----ILNGKVYTVQNPALPFAAVHGDPDIIAKGKTRFGPTALPLPLLERYNMSSL--PDFL 355 (497)
T ss_pred CCCCCCEEecCceEEEcCh----hhcCceecCCCCCCCCcCccCCCccCCCCeEEEccCcccchHHhCCCCCch--HHHH
Confidence 9878899999999988852 5678899999999999999999994 888999999999988888865443 2222
Q ss_pred --------------hhccCCcchhccchhhhhchHHHHhhhcchhHHHHHhhcccCCCCCCccc--CCCeeceEeeCCCC
Q psy7710 347 --------------STLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQR--GPSGVRAQALSSSG 410 (473)
Q Consensus 347 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~--~w~G~rp~~~t~d~ 410 (473)
+.+.+..+++++.+++.+++.. ......++.+++++|.+...++.. .++|+||+..++|.
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~----~~k~~~~~~~~~~~P~~~~~d~~~~~~~~GvR~Q~i~~~~ 431 (497)
T PTZ00383 356 KVWNPDLNLLAVYFDLFKDSTMRKYVLRNFLFEVPL----LNKYLFLKDARKIVPSLTRKDLRYCVGYGGVRPQLIDKVS 431 (497)
T ss_pred HhcCCChhHHHhHHHHhhChhHHHHHHHHHHHHHHh----cCHHHHHHHHHHhCCCCCHHHeeeccCCCceEEEEEECCC
Confidence 2345556666666665443322 235667899999999999888875 46799999887764
Q ss_pred ccccccceeee-ecCCccccchHHHHHHHHHHHHhhCCeEecccceeecc
Q psy7710 411 DLVDDFGVKAI-HSPHTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFK 459 (473)
Q Consensus 411 ~p~~g~~~~~g-~~~~~gi~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 459 (473)
.-+ .+-+. .....|+++ .++|.-|...|-.+.+.|+...|+++-
T Consensus 432 ~~L---~~g~~~i~~~~~~i~--~~~~spgast~l~~~~~d~~~~~~~~~ 476 (497)
T PTZ00383 432 KKL---LLGEGKIDPGKGIIF--NITPSPGATTCLGNAESDMREICERLG 476 (497)
T ss_pred CeE---ecCceEEecCCCcEE--eccCCCcHHHHHHHHHHHHHHHHHHhC
Confidence 322 11111 112234444 456666666665566666555555554
No 5
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=100.00 E-value=1.9e-38 Score=313.87 Aligned_cols=352 Identities=18% Similarity=0.190 Sum_probs=271.8
Q ss_pred CCcccEEEEcCChHHHHHHHHHHhcCCC-CeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHH
Q psy7710 55 PALYDVVVVGGGIVGVATARELKLNYPK-MKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYF 133 (473)
Q Consensus 55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G-~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (473)
..++||+|||||++|+++|++|+++. | .+|+||||+ .++.++|+++.++++....... ...+...+.+.|.++.
T Consensus 28 ~~~~dvvIIGgGi~G~s~A~~L~~~~-g~~~V~vle~~-~~~~gas~~~~g~~~~~~~~~~---~~~~~~~s~~l~~~l~ 102 (407)
T TIGR01373 28 KPTYDVIIVGGGGHGLATAYYLAKEH-GITNVAVLEKG-WLGGGNTGRNTTIVRSNYLYPE---SAELYEHAMKLWEGLS 102 (407)
T ss_pred CccCCEEEECCcHHHHHHHHHHHHhc-CCCeEEEEEcc-cccCcccccccceeeecccCcc---ccHHHHHHHHHHHHHH
Confidence 36789999999999999999999842 6 499999998 6999999999999987654322 2356677888999998
Q ss_pred HhcCCC--CcccCeEEEEeCc-ChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCccc--------ceeEecCCcccee
Q psy7710 134 DKRNIP--YKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKG--------VKAIHSPNTGIVD 202 (473)
Q Consensus 134 ~~~~~~--~~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~--------~~~~~~~~~~~~~ 202 (473)
++.+++ +.++|.+.++.++ +.+.+.+.++.++..|+ +.++++++++.+.+|.+.. .++++.+.++.++
T Consensus 103 ~~~~~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~g~-~~~~l~~~el~~~~P~l~~~~~~~~~~~ga~~~~~~g~v~ 181 (407)
T TIGR01373 103 QDLNYNVMFSQRGVLNLCHSTADMDDGARRVNAMRLNGV-DAELLSPEQVRRVIPILDFSPDARFPVVGGLLQRRGGTAR 181 (407)
T ss_pred HHhCCCcCEEeccEEEEeCCHHHHHHHHHHHHHHHHcCC-CeEEeCHHHHHHhCCCCccccccccceeEEEEcCCCCcCC
Confidence 887654 6889999999888 77888888888888898 7899999999999997652 4788999999999
Q ss_pred HHHHHHHHHHHHHHcCcEEEeCceEEEEEEc-CCe-EEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeee
Q psy7710 203 WGLVTRVMGEEFCELGGEIRLNQQVESFKEN-PES-VTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRG 280 (473)
Q Consensus 203 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~-v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g 280 (473)
|..++..|.+.++++|++++.+++|+++... ++. +.|+|++| ++.|+.||+|+|+|+..+.+.+|++. ++.|.++
T Consensus 182 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~g~~~--~~~~~~~ 258 (407)
T TIGR01373 182 HDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAAMAGFRL--PIESHPL 258 (407)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHHHHcCCCC--CcCcccc
Confidence 9999999999999999999999999999754 344 45888888 89999999999999988998888764 7788899
Q ss_pred EEEEeCcCcccCcccccccCCCCCCCccEEEEecCCCCeEEECCCccccccccCcccccchhHHHhhhccCCcchhccch
Q psy7710 281 EYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLK 360 (473)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (473)
+++.+++.... ....+.. +...+|++|+.+|++++|++.+.. ..++... +.
T Consensus 259 ~~~~~~~~~~~-~~~~~~~------~~~~~y~~p~~~g~~~ig~~~~~~---~~~~~~~-~~------------------ 309 (407)
T TIGR01373 259 QALVSEPLKPI-IDTVVMS------NAVHFYVSQSDKGELVIGGGIDGY---NSYAQRG-NL------------------ 309 (407)
T ss_pred eEEEecCCCCC-cCCeEEe------CCCceEEEEcCCceEEEecCCCCC---CccCcCC-CH------------------
Confidence 98877644321 1111110 122579999988999999764210 1111000 00
Q ss_pred hhhhchHHHHhhhcchhHHHHHhhcccCCCCCCcccCCCeeceEeeCCCCccc------cccceeeeecCCccccchHHH
Q psy7710 361 YTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLV------DDFGVKAIHSPHTGIVDWGLV 434 (473)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~t~d~~p~------~g~~~~~g~~~~~gi~~~~~~ 434 (473)
...+.+++.+.+++|.+.+.++.+.|+|+||+ |+|+.|+ .|+|+++||++| |+..++.+
T Consensus 310 ------------~~~~~l~~~~~~~~P~l~~~~~~~~w~G~~~~--t~D~~PiIg~~~~~gl~~a~G~~g~-G~~~ap~~ 374 (407)
T TIGR01373 310 ------------PTLEHVLAAILEMFPILSRVRMLRSWGGIVDV--TPDGSPIIGKTPLPNLYLNCGWGTG-GFKATPAS 374 (407)
T ss_pred ------------HHHHHHHHHHHHhCCCcCCCCeEEEecccccc--CCCCCceeCCCCCCCeEEEeccCCc-chhhchHH
Confidence 01235568999999999999999999999987 8999987 488999999876 57666666
Q ss_pred HHHHHHHHHhhCCeEe-cccceeecc
Q psy7710 435 TRVMGEEFCELGGEIR-LNQQVESFK 459 (473)
Q Consensus 435 a~~~g~~~~~~~~~~~-~~~~~~~~~ 459 (473)
|..++++|.....+.+ .+++..||.
T Consensus 375 G~~la~li~~~~~~~~~~~f~~~Rf~ 400 (407)
T TIGR01373 375 GTVFAHTLARGEPHDINAPFTLDRFH 400 (407)
T ss_pred HHHHHHHHhCCCCCCCCcccCHhHhc
Confidence 6666666655433333 347777775
No 6
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=100.00 E-value=1.7e-38 Score=315.52 Aligned_cols=350 Identities=16% Similarity=0.194 Sum_probs=259.9
Q ss_pred cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCC---c--------------------
Q psy7710 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKP---G-------------------- 115 (473)
Q Consensus 59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~---~-------------------- 115 (473)
||+|||||++|+++|++|+++ |.+|+|+|+...++.++|++|+|++++++.+.. .
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~--g~~V~vle~~~~~~~~aS~~n~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQA--GHEVTVIDRQPGPALETSFANAGQISPGYAAPWAAPGVPLKAIKWLFQRHAPLAIRP 79 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHC--CCEEEEEeCCCchhhhheeccCcccccccccccCCCchhhhhhhhccCCCCCeEecC
Confidence 799999999999999999999 899999999866889999999999988753211 0
Q ss_pred --------------------------hhHHHHHHHhHHHHHHHHHhcCCC--CcccCeEEEEeCc-ChhhHHHHHHHHHh
Q psy7710 116 --------------------------TLKAKLCVEGMNLAYEYFDKRNIP--YKKCGKLIVALNE-QLEPLHDLYERSIQ 166 (473)
Q Consensus 116 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~l~~~~~~-~~~~~~~~~~~~~~ 166 (473)
....++...+.+.|.++.++.+++ +.+.|.+.++.++ +.+.+.+.++.++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~ 159 (416)
T PRK00711 80 DGDPFQLRWMWQMLRNCTASRYAVNKSRMVRLAEYSRDCLKALRAETGIQYEGRQGGTLQLFRTQQQLDAAAKDIAVLEE 159 (416)
T ss_pred CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccCcEEEEECCHHHHHHHHHHHHHHHH
Confidence 011234456677888888877764 5788999999888 77888888888888
Q ss_pred CCCCcceeeCHHHHHhhcCCcc----c-ceeEecCCccceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeE-EEE
Q psy7710 167 NNVKDVRLVSAEEIKTIEPYCK----G-VKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESV-TIS 240 (473)
Q Consensus 167 ~g~~~~~~l~~~~~~~~~p~~~----~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v-~v~ 240 (473)
.|+ ++++++.+++.+.+|.+. . .++++.|.++.++|..++..|.+.++++|++|+++++|+++..+++.+ .|+
T Consensus 160 ~g~-~~~~l~~~e~~~~~P~l~~~~~~~~ga~~~p~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~ 238 (416)
T PRK00711 160 AGV-PYELLDRDELAAVEPALAGVRHKLVGGLRLPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQ 238 (416)
T ss_pred cCC-CceecCHHHHHHhCCCccCCCccceeEEECCCcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEE
Confidence 998 789999999999998764 2 578999999999999999999999999999999999999998877765 477
Q ss_pred cCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEeCcCcccCcccccccCCCCCCCccEEEEecCCCCeE
Q psy7710 241 TKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSV 320 (473)
Q Consensus 241 ~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~ 320 (473)
++++ +++||.||+|+|.|+..+++.+|++ .++.|++||.+.++...... .......+. . ..+..++.+|++
T Consensus 239 t~~~-~~~a~~VV~a~G~~~~~l~~~~g~~--~pi~p~rg~~~~~~~~~~~~--~p~~~~~~~---~-~~~~~~~~~~~~ 309 (416)
T PRK00711 239 TGGG-VITADAYVVALGSYSTALLKPLGVD--IPVYPLKGYSLTVPITDEDR--APVSTVLDE---T-YKIAITRFDDRI 309 (416)
T ss_pred eCCc-EEeCCEEEECCCcchHHHHHHhCCC--cccCCccceEEEEecCCCCC--CCceeEEec---c-cCEEEeecCCce
Confidence 7776 8999999999999999998888875 47899999988664322110 000011111 1 123345557889
Q ss_pred EECCCccccccccCcccccchhHHHhhhccCCcchhccchhhhhchHHHHhhhcchhHHHHHhhcccCCCCCCcccCCCe
Q psy7710 321 WLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSG 400 (473)
Q Consensus 321 ~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G 400 (473)
++|++.+.. +++. ..+.. ..+.+.+.+.++||.+.+.++.+.|+|
T Consensus 310 ~iG~~~~~~----~~~~-~~~~~------------------------------~~~~l~~~~~~~~P~l~~~~~~~~w~G 354 (416)
T PRK00711 310 RVGGMAEIV----GFDL-RLDPA------------------------------RRETLEMVVRDLFPGGGDLSQATFWTG 354 (416)
T ss_pred EEEEEEEec----CCCC-CCCHH------------------------------HHHHHHHHHHHHCCCcccccccceeec
Confidence 999864321 1110 00100 023445789999999999999999999
Q ss_pred eceEeeCCCCccc------cccceeeeecCCccccchHHHHHHHHHHHHhhCCeEecc-cceeec
Q psy7710 401 VRAQALSSSGDLV------DDFGVKAIHSPHTGIVDWGLVTRVMGEEFCELGGEIRLN-QQVESF 458 (473)
Q Consensus 401 ~rp~~~t~d~~p~------~g~~~~~g~~~~~gi~~~~~~a~~~g~~~~~~~~~~~~~-~~~~~~ 458 (473)
+||+ |+|+.|+ .|+|+++||++| |+..++.+|..+++++.....+++.. |+.+||
T Consensus 355 ~r~~--t~D~~PiIG~~~~~gl~~a~G~~g~-G~~~ap~~g~~la~li~g~~~~~~~~~f~~~Rf 416 (416)
T PRK00711 355 LRPM--TPDGTPIVGATRYKNLWLNTGHGTL-GWTMACGSGQLLADLISGRKPAIDADDLSVARY 416 (416)
T ss_pred cCCC--CCCCCCEeCCcCCCCEEEecCCchh-hhhhhhhHHHHHHHHHcCCCCCCCccccCccCC
Confidence 9987 8999987 478999999876 57554555555555554433333332 555554
No 7
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=100.00 E-value=7e-38 Score=313.06 Aligned_cols=345 Identities=18% Similarity=0.219 Sum_probs=250.6
Q ss_pred CCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCch--------hHHHH---HH
Q psy7710 55 PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGT--------LKAKL---CV 123 (473)
Q Consensus 55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~--------~~~~~---~~ 123 (473)
+.++||+|||||++|+++|++|+++.+|.+|+|+|++ .+|.++|++|+|++.+.. ..... ...++ ..
T Consensus 22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~-~~g~GaSgrn~G~~~~~~-~~~~~~~~~~g~~~~~~l~~~~~ 99 (460)
T TIGR03329 22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEAD-LCGAGASGRNGGCMLTWS-TKFFTLKRLFGEAEAARLVKASE 99 (460)
T ss_pred CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCC-ccccccccccCccccccc-cCHHHHHHhhCHHHHHHHHHHHH
Confidence 3568999999999999999999998678999999998 789999999999765321 11111 11122 23
Q ss_pred HhHHHHHHHHHhcCCC--CcccCeEEEEeCc-ChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccc
Q psy7710 124 EGMNLAYEYFDKRNIP--YKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGI 200 (473)
Q Consensus 124 ~~~~~~~~~~~~~~~~--~~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~ 200 (473)
...+.+.++.++.+++ +.++|.+.++.++ +.+.++...+.+++.|++.+++++.+++.+.+|.....++++.+.+++
T Consensus 100 ~~~~~~~~l~~~~~i~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~G~~~~~~l~~~e~~~~~~~~~~~~g~~~~~~g~ 179 (460)
T TIGR03329 100 QAVLEIAAFCEQHNIDAQLRLDGTLYTATNPAQVGSMDPVVDALERRGINSWQRLSEGELARRTGSARHLEGFYSPVAAS 179 (460)
T ss_pred HHHHHHHHHHHHhCCCCCcccCCEEEEecCHHHHHHHHHHHHHHHHhCCCCeEEcCHHHHHHHhCCCcceEEEEeCCCeE
Confidence 3445556666666654 6778999999887 778888888888888874368999999999888655568899999999
Q ss_pred eeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeee
Q psy7710 201 VDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRG 280 (473)
Q Consensus 201 ~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g 280 (473)
+||.+++..|.+.+++.|++|+++++|++|.. ++.+.|+|.+| +++||.||+|+|+|+..+...++ ..+.|+++
T Consensus 180 i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~s~~l~~~~~----~~~~p~~~ 253 (460)
T TIGR03329 180 VQPGLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAWMASHFPQFE----RSIAIVSS 253 (460)
T ss_pred ECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEcccccccccChhhc----CeEEEecc
Confidence 99999999999999999999999999999975 45577888888 89999999999999888777554 25778899
Q ss_pred EEEEeCcCcccCccccccc----CCCCCCCccEEEEecCCCCeEEECCCccccccccCcccccchhHHHhhhccCCcchh
Q psy7710 281 EYLLLNPAKQHLVRGNIYP----VPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWR 356 (473)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (473)
|++.+++..... ....++ ..+.. ....|++|..+|++++|+..... .+... .++. ...
T Consensus 254 ~~~~t~pl~~~~-~~~~~~~~~~~~d~~--~~~~y~r~~~dgrll~G~~~~~~----~~~~~-~~~~-----~~~----- 315 (460)
T TIGR03329 254 DMVITEPAPDLL-AATGLDHGTSVLDSR--IFVHYYRSTPDGRLMLGKGGNTF----AYGGR-MLPV-----FNQ----- 315 (460)
T ss_pred ceEecCCCcHHH-HhhcCCCCceEecch--hhhhheeECCCCcEEEcCCcccc----ccCcc-cccc-----cCC-----
Confidence 988887654211 111111 11111 11258999889999999753210 00000 0000 000
Q ss_pred ccchhhhhchHHHHhhhcchhHHHHHhhcccCCCCCCcccCCCeeceEeeCCCCccc-------cccceeeeecCCcccc
Q psy7710 357 LGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLV-------DDFGVKAIHSPHTGIV 429 (473)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~t~d~~p~-------~g~~~~~g~~~~~gi~ 429 (473)
.. .+.+.+.+.+.++||.|.+.++.+.|+|+||+ |+|+.|+ .|+|+++||++| |+.
T Consensus 316 ---------~~-----~~~~~l~~~~~~~fP~L~~~~i~~~W~G~~~~--t~D~~P~iG~~~~~~gl~~a~G~~G~-Gv~ 378 (460)
T TIGR03329 316 ---------PS-----PYEALLTRSLRKFFPALAEVPIAASWNGPSDR--SVTGLPFFGRLNGQPNVFYGFGYSGN-GVA 378 (460)
T ss_pred ---------ch-----HHHHHHHHHHHHhCCCcCCCeeeEEEeceeCC--CCCCCceeeeecCCCCEEEEeCcCCC-Chh
Confidence 00 01234568899999999999999999999987 8999987 478999999886 564
Q ss_pred chHHHHHHHHHHH
Q psy7710 430 DWGLVTRVMGEEF 442 (473)
Q Consensus 430 ~~~~~a~~~g~~~ 442 (473)
.++.+|+.+++++
T Consensus 379 ~a~~~G~~lA~li 391 (460)
T TIGR03329 379 PSRMGGQILSSLV 391 (460)
T ss_pred HHHHHHHHHHHHh
Confidence 4444444444444
No 8
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=100.00 E-value=2.2e-37 Score=301.84 Aligned_cols=345 Identities=26% Similarity=0.407 Sum_probs=273.2
Q ss_pred cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHhcCC
Q psy7710 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDKRNI 138 (473)
Q Consensus 59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (473)
||+|||||++|+++|++|+++ |.+|+|+|++ .+++++|..+.|++++.....+.....++...+.+.|+++.++.+.
T Consensus 1 DvvIIGaGi~G~~~A~~La~~--G~~V~l~e~~-~~~~~aS~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 77 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARR--GHSVTLLERG-DIGSGASGRSGGLVRPGISSYPDPQYARLARESVEFWRELAEEYGI 77 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHT--TSEEEEEESS-STTSSGGGSSSEEEECSGSHHSSHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CEEEECcCHHHHHHHHHHHHC--CCeEEEEeec-cccccccccccccccccccccccccccchhhhhccchhhhhhhcCc
Confidence 799999999999999999999 9999999999 8999999999999998743334445678999999999999998886
Q ss_pred CC--cccCeEEEEeCc-ChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCccc--ceeEecCCccceeHHHHHHHHHHH
Q psy7710 139 PY--KKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKG--VKAIHSPNTGIVDWGLVTRVMGEE 213 (473)
Q Consensus 139 ~~--~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~l~~~ 213 (473)
+. .+.|.+.+..++ +.+.+++....+...++ ..++++.+++...+|.+.. ..+++.+.++.++|..+++.|.+.
T Consensus 78 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~i~~~~l~~~l~~~ 156 (358)
T PF01266_consen 78 PVGFRPCGSLYLAEDEEDAESLERLLDRLRRNGI-PYELLSPEELRELFPFLNPRIEGGVFFPEGGVIDPRRLIQALAAE 156 (358)
T ss_dssp SCEEEECEEEEEESSHHHHHHHHHHHHHHHHTTT-TEEEEEHHHHHHHSTTSSTTTEEEEEETTEEEEEHHHHHHHHHHH
T ss_pred ccccccccccccccchhhhhhccccccccccccc-cccccchhhhhhhhcccccchhhhhcccccccccccchhhhhHHH
Confidence 64 588999999777 77788888888888998 8999999999999987765 678999999999999999999999
Q ss_pred HHHcCcEEEeCceEEEEEEcCCeEE-EEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEeCcCcccC
Q psy7710 214 FCELGGEIRLNQQVESFKENPESVT-ISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHL 292 (473)
Q Consensus 214 ~~~~Gv~i~~~~~V~~i~~~~~~v~-v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~~~~~~~~ 292 (473)
+++.|++|+++++|++|..++++|. |++.+| .++||.||+|+|.|+..|++.++.+. ++.|.+++++.+++.....
T Consensus 157 ~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g-~i~ad~vV~a~G~~s~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 233 (358)
T PF01266_consen 157 AQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDG-EIRADRVVLAAGAWSPQLLPLLGLDL--PLRPVRGQVLVLEPPESPL 233 (358)
T ss_dssp HHHTT-EEEESEEEEEEEEETTEEEEEEETTE-EEEECEEEE--GGGHHHHHHTTTTSS--TEEEEEEEEEEEEGCCSGS
T ss_pred HHHhhhhccccccccchhhccccccccccccc-ccccceeEecccccceeeeecccccc--cccccceEEEEEccCCccc
Confidence 9999999999999999999999988 999999 59999999999999999999998764 7999999999998654332
Q ss_pred cccccccCCCCCCCccEEEEecCCCCeEEECCCccccccccCcccccchhHHHhhhccCCcchhccchhhhhchHHHHhh
Q psy7710 293 VRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMS 372 (473)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (473)
. ..+...+....+...+|+.|+. |.+++|.+.. . +.... +... ....+...+.
T Consensus 234 ~-~~~~~~~~~~~~~~~~~~~p~~-g~~~ig~~~~-~-----~~~~~-~~~~------------------~~~~~~~~~~ 286 (358)
T PF01266_consen 234 A-PAILFPPVIFGPSDGVYIRPRP-GGVLIGTADG-N-----YDPGP-SPED------------------SSGEDPDVDE 286 (358)
T ss_dssp S-SEEEEEEECESSCTEEEEEEET-TEEEEEESEC-E-----EEESS-SHHH------------------HSHHHHHHHH
T ss_pred c-cccccccccccccccceecccc-cccccccccc-c-----ccccc-cccc------------------cccccccccH
Confidence 1 1111111112223468899987 8889994421 1 11000 1100 0000111122
Q ss_pred hcchhHHHHHhhcccCCCCCCcccCCCeeceEeeCCCCccc-------cccceeeeecCCccccchHHHHHHHHHHHHhh
Q psy7710 373 WFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLV-------DDFGVKAIHSPHTGIVDWGLVTRVMGEEFCEL 445 (473)
Q Consensus 373 ~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~t~d~~p~-------~g~~~~~g~~~~~gi~~~~~~a~~~g~~~~~~ 445 (473)
. .+.+++.+.+++|.|.+.++.+.|+|+||+ ++|+.|+ .|+|+++|++++ |+ .+|+.+|++++++
T Consensus 287 ~-~~~l~~~~~~~~p~l~~~~v~~~~~g~r~~--t~d~~p~ig~~~~~~~l~~~~g~~~~-G~----~~a~~~a~~~a~~ 358 (358)
T PF01266_consen 287 E-IDELLERLARLLPGLGDAEVVRSWAGIRPF--TPDGRPIIGELPGSPNLYLAGGHGGH-GF----TLAPGLAELLADL 358 (358)
T ss_dssp H-HHHHHHHHHHHSGGGGGSEEEEEEEEEEEE--ETTSECEEEEESSEEEEEEEECETTC-HH----HHHHHHHHHHHHH
T ss_pred H-HHHhHHHHHHHHHHhhhccccccccceeee--ccCCCeeeeecCCCCCEEEEECCCch-HH----HHHHHHHHHHhcC
Confidence 2 457789999999999999999999999988 7999984 688999998775 45 5788888888764
No 9
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=100.00 E-value=6.6e-37 Score=298.65 Aligned_cols=327 Identities=19% Similarity=0.248 Sum_probs=245.4
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHhcC
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDKRN 137 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (473)
+||+|||||++|+++|++|+++ |.+|+|+|++ .++.++|+++.|++.+.... +. ....+...+.+.|.++.++.+
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~--G~~V~vle~~-~~~~gaS~~~~G~~~~~~~~-~~-~~~~l~~~~~~~~~~l~~~~~ 75 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARR--GLSVTVIERS-SRAQGASVRNFGQVWPTGQA-PG-PAWDRARRSREIWLELAAKAG 75 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHC--CCeEEEEeCC-CCCCCcccccCceEEecCCC-Cc-cHHHHHHHHHHHHHHHHHHcC
Confidence 5899999999999999999999 8999999998 67889999999998753221 11 234578888999999998888
Q ss_pred CCCcccCeEEEEeCc-ChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcc--c-ceeEecCCccceeHHHHHHHHHHH
Q psy7710 138 IPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCK--G-VKAIHSPNTGIVDWGLVTRVMGEE 213 (473)
Q Consensus 138 ~~~~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~--~-~~~~~~~~~~~~~~~~~~~~l~~~ 213 (473)
+.+.+.|.+.+..++ +.+.+....+.....+. ..++++++++.+.+|.+. . .++++.+.++++||..++..|.+.
T Consensus 76 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~p~l~~~~~~~~~~~~~~g~v~p~~~~~~l~~~ 154 (365)
T TIGR03364 76 IWVRENGSLHLARTEEELAVLEEFAATREPAEY-RVELLTPAEVAAKFPALRLDGLRGGLHSPDELRVEPREAIPALAAY 154 (365)
T ss_pred CCEEeCCEEEEeCCHHHHHHHHHHHHhhhhcCC-CeEEECHHHHHHhCCCCCccCceEEEEcCCCeeECHHHHHHHHHHH
Confidence 888889999998776 65666666665556676 689999999999999664 2 678999999999999999999999
Q ss_pred HHHc-CcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEeCcCcccC
Q psy7710 214 FCEL-GGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHL 292 (473)
Q Consensus 214 ~~~~-Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~~~~~~~~ 292 (473)
+.++ |++++++++|.+|... .|+|.+| .++||.||+|+|+|+..|++.++.+ .++.|+|||++.+++.....
T Consensus 155 ~~~~~Gv~i~~~t~V~~i~~~----~v~t~~g-~i~a~~VV~A~G~~s~~l~~~~~~~--~~~~p~~~q~~~~~p~~~~~ 227 (365)
T TIGR03364 155 LAEQHGVEFHWNTAVTSVETG----TVRTSRG-DVHADQVFVCPGADFETLFPELFAA--SGVRRCKLQMMRTAPQPRLP 227 (365)
T ss_pred HHhcCCCEEEeCCeEEEEecC----eEEeCCC-cEEeCEEEECCCCChhhhCcchhhc--cCcceEEEEeeeccCCCCCc
Confidence 8875 9999999999999643 5778887 6899999999999998887665543 37899999999998754211
Q ss_pred cccccc--------------------------cCCCCCCCccEEEEecCCCCeEEECCCccccccccCcccccchhHHHh
Q psy7710 293 VRGNIY--------------------------PVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELF 346 (473)
Q Consensus 293 ~~~~~~--------------------------~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~ 346 (473)
...... +.+........+|++|+.+|++++|++.+.....+.+ +..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~~~~~~-----~~~--- 299 (365)
T TIGR03364 228 LGTALLTGLSLRRYEGFAELPSAAALKARLQEEEPELLEWGIHLMVSQNPDGELIIGDSHEYGLAPDPF-----DDE--- 299 (365)
T ss_pred CCccccccceeeechhHhhCcchHHHHhhhcccCchhhhcCeEEEEEECCCCCEEecCcccccCCCCCc-----chH---
Confidence 111000 0000001123579999999999999986532111110 000
Q ss_pred hhccCCcchhccchhhhhchHHHHhhhcchhHHHHHhhcccCCCCCCcccCCCeeceEeeCCCCccc-----cccceeee
Q psy7710 347 STLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLV-----DDFGVKAI 421 (473)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~t~d~~p~-----~g~~~~~g 421 (473)
.. .+.+.+.+.+++ .+.+.++.+.|+|+||+ |+|..|+ .|+|+++|
T Consensus 300 ------------------~~--------~~~l~~~~~~~~-~l~~~~~~~~w~G~r~~--t~d~~~v~~~~~~g~~~a~G 350 (365)
T TIGR03364 300 ------------------EI--------DNLILAEAKTIL-GLPDLDIVERWQGVYAS--SPPAPIFLERPDDGVTVVVV 350 (365)
T ss_pred ------------------HH--------HHHHHHHHHHhc-CCCCCceEEEEeEEecC--CCCCCceecCCCCCeEEEEe
Confidence 01 123345666665 78889999999999998 6887776 68999999
Q ss_pred ecCCccccchHHHHHHHH
Q psy7710 422 HSPHTGIVDWGLVTRVMG 439 (473)
Q Consensus 422 ~~~~~gi~~~~~~a~~~g 439 (473)
|++| |+. +||.+|
T Consensus 351 ~~g~-G~~----~ap~~~ 363 (365)
T TIGR03364 351 TSGA-GMT----LSFGLA 363 (365)
T ss_pred cCCC-ccc----cccccc
Confidence 9886 564 455444
No 10
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=100.00 E-value=1.7e-36 Score=301.43 Aligned_cols=381 Identities=22% Similarity=0.301 Sum_probs=288.9
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccC--CCcceEEeec---cCCC----chhHHHHH----
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG--HNSGVVHAGI---YYKP----GTLKAKLC---- 122 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~--~~~g~~~~~~---~~~~----~~~~~~~~---- 122 (473)
.++||+|||||++|+++||+|++..++.+|+|+||...++.++|+ +|+|..|.+. +|.+ +.+....+
T Consensus 4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~~sS~~~~NaG~ghag~~e~~y~~~~~~g~~~~~~a~~~~ 83 (494)
T PRK05257 4 SKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVALESSNGWNNAGTGHSALCELNYTPEKADGSIDISKAVKIN 83 (494)
T ss_pred ccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhhhcCCCcCccccccccchhhcCCCCCCCCchhHHHHHHHH
Confidence 568999999999999999999997678999999998667878777 7888888773 5555 34443333
Q ss_pred ---HHhHHHHHHHHHhcCC-----CC-cccCeEEEEeCc-ChhhHHHHHHHHHhCCC-Ccceee-CHHHHHhhcCCcc--
Q psy7710 123 ---VEGMNLAYEYFDKRNI-----PY-KKCGKLIVALNE-QLEPLHDLYERSIQNNV-KDVRLV-SAEEIKTIEPYCK-- 188 (473)
Q Consensus 123 ---~~~~~~~~~~~~~~~~-----~~-~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~-~~~~~l-~~~~~~~~~p~~~-- 188 (473)
..+.++|..+.++ ++ .+ .++|.+.++.++ +.+.+...++.++++|+ ..++++ +.+++.+++|.+.
T Consensus 84 ~~~~~s~~~~~~l~~~-g~~~~~~~~~~~~G~l~la~~e~e~~~l~~~~~~~~~~g~~~~~~~~~d~~el~e~eP~l~~~ 162 (494)
T PRK05257 84 EQFQISRQFWAYLVEK-GVLPDPRSFINPVPHMSFVWGEDNVAFLKKRYEALKANPLFAGMEFSEDPAQIKEWAPLMMEG 162 (494)
T ss_pred HHHHHHHHHHHHHHHc-CCCCCcccccccCCeEEEEECHHHHHHHHHHHHHHHhCCCCCCCEEeCCHHHHHHhCcccccC
Confidence 3444555554443 33 13 588999999888 88889999988888885 246674 8999999999873
Q ss_pred -----cceeEecCCccceeHHHHHHHHHHHHHHcC-cEEEeCceEEEEEEcCC-eEEEEc---CCCc--EEEcCEEEEcC
Q psy7710 189 -----GVKAIHSPNTGIVDWGLVTRVMGEEFCELG-GEIRLNQQVESFKENPE-SVTIST---KQGD--HLESSYALVCA 256 (473)
Q Consensus 189 -----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~-~v~v~~---~~g~--~i~ad~VV~aa 256 (473)
..+++|+|.++.+|+..+++.|.+.+++.| ++|+++++|++|..+++ .|.|.+ .+|. +++|++||+|+
T Consensus 163 r~~~~~~~Al~~p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaA 242 (494)
T PRK05257 163 RDPSQKVAATRIEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGA 242 (494)
T ss_pred CCCCcceeEEEcCCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECC
Confidence 378999999999999999999999999987 89999999999997554 366553 3352 68999999999
Q ss_pred CcChHHHHHhcCCCC--CCceeeeeeEEEEeCcCcccCcccc--cccCCCCCCCccEE-EE-ecCCCCe--EEECCCccc
Q psy7710 257 GLQADEMALKSGCSL--EPAIVPFRGEYLLLNPAKQHLVRGN--IYPVPDPNFPFLGV-HF-TPRMDGS--VWLGPNAVL 328 (473)
Q Consensus 257 G~~s~~l~~~~g~~~--~~~~~p~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~-~p~~~g~--~~iG~~~~~ 328 (473)
|+|+..+++++|+.. +.++.|++||++.++++.. ..++. +|+.+++..|..++ ++ .+..+|. +.+|+++.+
T Consensus 243 Gg~s~~L~~~~Gi~~~~~~~i~PvrGq~l~~~~~~~-v~~~~~kvY~~~~~~~P~~~vPh~dtr~i~G~~~~~~GP~A~~ 321 (494)
T PRK05257 243 GGGALPLLQKSGIPEAKGYGGFPVSGQFLVCENPEV-VAQHHAKVYGKASVGAPPMSVPHLDTRVIDGKRSLLFGPFAGF 321 (494)
T ss_pred CcchHHHHHHcCCCccCCCCeeeeeEEEEEcCCHHH-HhcCCeEEecCCCCCCCCCCCCCCCCcEECCceeEEECCCccc
Confidence 999999999999873 4578999999999986532 11233 88888866664333 33 2223564 889999886
Q ss_pred cccccCcccccchhHHHhhhccCCcchhcc---chhh---hhchHHHHhhhcchhHHHHHhhcccCCCCCCcccCCCeec
Q psy7710 329 AFKKEGYRWRDFSVRELFSTLRYPGFWRLG---LKYT---RYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVR 402 (473)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~r 402 (473)
.+.. ..+.+..|+++.+.+.+++.++ .+|+ ++.+.+++.. ....++.+++++|.++..++....+|+|
T Consensus 322 ~~~~----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~d~~~~~aG~R 395 (494)
T PRK05257 322 STKF----LKNGSLLDLFSSVRPSNLLPMLAVGLDNFDLTKYLISQVMLS--DEDRFEALREFYPNAKPEDWELIVAGQR 395 (494)
T ss_pred cHHh----ccCCCHHHHHHhcCccccHHHHHHHhhhhHHHHHHHHHHhhC--HHHHHHHHHHhCCCCCHHHceEcCCceE
Confidence 6433 3456788899999999999999 8885 8888887754 5577899999999999999999999999
Q ss_pred eEeeCCC----Ccccccc-ceeeeecCCccccch--H--HHHHHHHHHHHhh
Q psy7710 403 AQALSSS----GDLVDDF-GVKAIHSPHTGIVDW--G--LVTRVMGEEFCEL 445 (473)
Q Consensus 403 p~~~t~d----~~p~~g~-~~~~g~~~~~gi~~~--~--~~a~~~g~~~~~~ 445 (473)
++..++| |..+.|+ .+..+. +.-.++++ | ..+..++..+.+.
T Consensus 396 ~Q~i~~~~~~~g~L~~~~~~i~~~~-~~~~~l~~~SPgat~s~~i~~~v~~~ 446 (494)
T PRK05257 396 VQIIKKDPKKGGVLQFGTEVVSSAD-GSIAALLGASPGASTAVPIMLEVLEK 446 (494)
T ss_pred eEEEccCCCCCCEEECCcEEEecCC-CeEEEEcCCCchHHHHHHHHHHHHHH
Confidence 9999888 8888886 554331 11112222 2 4455667766654
No 11
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=100.00 E-value=8.7e-37 Score=302.26 Aligned_cols=340 Identities=17% Similarity=0.204 Sum_probs=249.3
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccC---CC--------------------
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYY---KP-------------------- 114 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~---~~-------------------- 114 (473)
+||+|||||++|+++|++|+++ |.+|+|+||++.++.++|++|+|++.+.... .+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~--g~~V~vle~~~~~~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR--GYQVTVFDRHRYAAMETSFANGGQLSASNAEVWNHWATVLKGLKWMLRKDAPLLLN 79 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCCCCCcCcccccCCEEeecccccccChHHHHhhhHHhcCCCCCeEec
Confidence 5899999999999999999999 9999999999658999999999999764211 00
Q ss_pred -c-----------------------hhHHHHHHHhHHHHHHHHHhcCCC--CcccCeEEEEeCc-ChhhHHHHHHHHHhC
Q psy7710 115 -G-----------------------TLKAKLCVEGMNLAYEYFDKRNIP--YKKCGKLIVALNE-QLEPLHDLYERSIQN 167 (473)
Q Consensus 115 -~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~l~~~~~~-~~~~~~~~~~~~~~~ 167 (473)
. ....+++..+.+.|.++.++.+++ +.++|.+.++.++ +.+.+.+..+.++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~ 159 (410)
T PRK12409 80 PKPSWHKYSWLAEFLAHIPNYRANTIETVRLAIAARKHLFDIAEREGIDFDLERRGILHIYHDKAGFDHAKRVNALLAEG 159 (410)
T ss_pred CCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcceeecCcEEEEECCHHHHHhccHHHHHHHhc
Confidence 0 001345667778888888887764 5789999999877 777777788888888
Q ss_pred CCCcceeeCHHHHHhhcCCccc--ceeEecCCccceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCC-
Q psy7710 168 NVKDVRLVSAEEIKTIEPYCKG--VKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQG- 244 (473)
Q Consensus 168 g~~~~~~l~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g- 244 (473)
++ ..++++++++.+++|.+.. .++++.+.++.+++..++..|.+.+++.|++++++++|+++..+++.+.+.+.++
T Consensus 160 g~-~~~~l~~~e~~~~~P~l~~~~~ga~~~~~~g~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~ 238 (410)
T PRK12409 160 GL-ERRAVTPEEMRAIEPTLTGEYYGGYYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSA 238 (410)
T ss_pred CC-CeEEcCHHHHHHhCCCCccccceEEEcCCCCccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCC
Confidence 88 7899999999999998754 6789999999999999999999999999999999999999998777776544322
Q ss_pred ----cEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEeCcCcccCcccccccCCCCCCCccEEEEecCCCCeE
Q psy7710 245 ----DHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSV 320 (473)
Q Consensus 245 ----~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~ 320 (473)
.+++||.||+|+|+|+..+.++++.. .++.|++||++.+........ ...|..........++..+...+++
T Consensus 239 ~~~~~~i~a~~vV~a~G~~s~~l~~~~~~~--~~i~p~~g~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~ 314 (410)
T PRK12409 239 EHPSRTLEFDGVVVCAGVGSRALAAMLGDR--VNVYPVKGYSITVNLDDEASR--AAAPWVSLLDDSAKIVTSRLGADRF 314 (410)
T ss_pred CCccceEecCEEEECCCcChHHHHHHhCCC--CccccCCceEEEeecCCcccc--ccCCceeeeecCCcEEEEecCCCcE
Confidence 37899999999999999999888764 478999999987753321110 0011000000001122222235678
Q ss_pred EECCCccccccccCcccccchhHHHhhhccCCcchhccchhhhhchHHHHhhhcchhHHHHHhhcccCCCCCCcccCCCe
Q psy7710 321 WLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSG 400 (473)
Q Consensus 321 ~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G 400 (473)
++|++.++. +++. +.++ ...+.+++.+.++||.|.+..+. .|+|
T Consensus 315 ~igg~~~~~----~~~~-~~~~------------------------------~~~~~l~~~~~~~~P~l~~~~~~-~w~G 358 (410)
T PRK12409 315 RVAGTAEFN----GYNR-DIRA------------------------------DRIRPLVDWVRRNFPDVSTRRVV-PWAG 358 (410)
T ss_pred EEEEEEEec----CCCC-CCCH------------------------------HHHHHHHHHHHHhCCCCCccccc-eecc
Confidence 888875431 1110 1010 01345568999999999988776 7999
Q ss_pred eceEeeCCCCccc------cccceeeeecCCccccchHHHHHHHHHHHH
Q psy7710 401 VRAQALSSSGDLV------DDFGVKAIHSPHTGIVDWGLVTRVMGEEFC 443 (473)
Q Consensus 401 ~rp~~~t~d~~p~------~g~~~~~g~~~~~gi~~~~~~a~~~g~~~~ 443 (473)
+||+ |+|+.|+ .|+|+++||+ |.|+..++.+|..++++|.
T Consensus 359 ~r~~--t~D~~PiiG~~~~~~l~~~~G~~-~~G~~~ap~~g~~lA~~i~ 404 (410)
T PRK12409 359 LRPM--MPNMMPRVGRGRRPGVFYNTGHG-HLGWTLSAATADLVAQVVA 404 (410)
T ss_pred cCCC--CCCCCCeeCCCCCCCEEEecCCc-ccchhhcccHHHHHHHHHc
Confidence 9987 8999986 5789999975 4577655555555555554
No 12
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=100.00 E-value=3.7e-36 Score=294.86 Aligned_cols=357 Identities=17% Similarity=0.159 Sum_probs=257.4
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc--CcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHH
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG--MHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYF 133 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g--~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (473)
.++||+|||||++|+++|++|+++ |.+|+|||++ .++ .+++..+.++++..+.. .....++...+.+.|.++.
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~~--g~~V~lie~~-~~~~~~~ss~~~~~~~~~~~~~--~~~~~~l~~~s~~~~~~l~ 76 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARR--GLRVLGLDRF-MPPHQQGSSHGDTRIIRHAYGE--GPAYVPLVLRAQELWRELE 76 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHHC--CCeEEEEecc-cCCCCCcCcCCcceEEEeeccC--CchhhHHHHHHHHHHHHHH
Confidence 358999999999999999999999 9999999998 444 24455555666543321 1234568888999999998
Q ss_pred HhcCCC-CcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCccc---ceeEecCCccceeHHHHHHH
Q psy7710 134 DKRNIP-YKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKG---VKAIHSPNTGIVDWGLVTRV 209 (473)
Q Consensus 134 ~~~~~~-~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~~ 209 (473)
++.+.+ +.++|.+.+..++ .+.+....+.+++.|+ +.++++.+++.+++|.+.. ..+++.+.+++++|..++..
T Consensus 77 ~~~~~~~~~~~G~l~~~~~~-~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~P~l~~~~~~~a~~~~~~g~v~p~~~~~~ 154 (376)
T PRK11259 77 RESGEPLFVRTGVLNLGPAD-SDFLANSIRSARQHGL-PHEVLDAAEIRRRFPQFRLPDGYIALFEPDGGFLRPELAIKA 154 (376)
T ss_pred HHhCCccEEEECCEEEcCCC-CHHHHHHHHHHHHcCC-CcEEECHHHHHHhCCCCcCCCCceEEEcCCCCEEcHHHHHHH
Confidence 887765 5678888886443 3345566677778888 7899999999999997752 57889999999999999999
Q ss_pred HHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEeCcCc
Q psy7710 210 MGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAK 289 (473)
Q Consensus 210 l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~~~~~ 289 (473)
+.+.+.+.|++++++++|+++..+++.+.|++++| .++||.||+|+|.|+..++..+ ..++.|.+++++.+++..
T Consensus 155 ~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~~l~~~~----~~~i~~~~~~~~~~~~~~ 229 (376)
T PRK11259 155 HLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVKDLLPPL----ELPLTPVRQVLAWFQADG 229 (376)
T ss_pred HHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchhhhcccc----cCCceEEEEEEEEEecCC
Confidence 99999999999999999999998888888999888 8999999999999998887753 247899999999987643
Q ss_pred ccCcccccccCCCC-CCCccEEEEecCCCCe-EEECCCccccccccCcccccchhHHHhhhccCCcchhccchhhhhchH
Q psy7710 290 QHLVRGNIYPVPDP-NFPFLGVHFTPRMDGS-VWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSK 367 (473)
Q Consensus 290 ~~~~~~~~~~~~~~-~~~~~~~~~~p~~~g~-~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (473)
..... ..++.... ......+|++|+.+++ +++|++..... .. ++.+. +.. . ...
T Consensus 230 ~~~~~-~~~p~~~~~~~~~~~~y~~p~~~~~~l~ig~~~~~~~-~~-------~~~~~-~~~--~------------~~~ 285 (376)
T PRK11259 230 RYSEP-NRFPAFIWEVPDGDQYYGFPAENGPGLKIGKHNGGQE-IT-------SPDER-DRF--V------------TVA 285 (376)
T ss_pred ccCCc-cCCCEEEEecCCCceeEeccCCCCCceEEEECCCCCC-CC-------Chhhc-cCC--C------------CcH
Confidence 21000 00010000 0011247889998888 99998743110 00 00000 000 0 000
Q ss_pred HHHhhhcchhHHHHHhhcccCCCCCCcccCCCeeceEeeCCCCccc-------cccceeeeecCCccccchHHHHHHHHH
Q psy7710 368 EMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLV-------DDFGVKAIHSPHTGIVDWGLVTRVMGE 440 (473)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~t~d~~p~-------~g~~~~~g~~~~~gi~~~~~~a~~~g~ 440 (473)
...+.+++.+.++||.+.+ +.+.|+|+||+ |||+.|+ .|+|+++||++| |+..++.+|..+++
T Consensus 286 -----~~~~~l~~~~~~~~P~~~~--~~~~~~g~~~~--t~D~~P~ig~~~~~~gl~~~~G~~g~-G~~~ap~~g~~la~ 355 (376)
T PRK11259 286 -----EDGAELRPFLRNYLPGVGP--CLRGAACTYTN--TPDEHFIIDTLPGHPNVLVASGCSGH-GFKFASVLGEILAD 355 (376)
T ss_pred -----HHHHHHHHHHHHHCCCCCc--cccceEEeccc--CCCCCceeecCCCCCCEEEEecccch-hhhccHHHHHHHHH
Confidence 1134556889999998876 88999999987 8999987 489999999876 57665566666666
Q ss_pred HHHhhCCeEec-ccceeec
Q psy7710 441 EFCELGGEIRL-NQQVESF 458 (473)
Q Consensus 441 ~~~~~~~~~~~-~~~~~~~ 458 (473)
+|.....+.++ ++..+||
T Consensus 356 li~~~~~~~~~~~~~~~Rf 374 (376)
T PRK11259 356 LAQDGTSDFDLSPFSLSRF 374 (376)
T ss_pred HHhcCCCCCCcCccCcccc
Confidence 66554443332 3666666
No 13
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=100.00 E-value=5.9e-36 Score=297.58 Aligned_cols=344 Identities=23% Similarity=0.312 Sum_probs=265.0
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccC--CCcceEEeec---cCCCchh-------HHHHHHHh
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG--HNSGVVHAGI---YYKPGTL-------KAKLCVEG 125 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~--~~~g~~~~~~---~~~~~~~-------~~~~~~~~ 125 (473)
+||+|||||++|+++|++|++..||.+|+|+||...++.++|+ +|+|..|.+. +|.+... +...+...
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a~~~S~~~~naG~~hag~~e~~y~~~~~~~~~~l~~a~~~~~~ 80 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVAAESSNPWNNAGTGHSALCELNYTPEMADGSIDIAKAVGINEQ 80 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcchhhhCCCCCcccccccchhhccCCCccCCCchhHHHHHHHHHH
Confidence 5899999999999999999998779999999998678988888 6888888877 5666422 22233333
Q ss_pred ----HHHHHHHHHhcCC-----CC-cccCeEEEEeCc-ChhhHHHHHHHHHhCCCC-ccee-eCHHHHHhhcCCcc----
Q psy7710 126 ----MNLAYEYFDKRNI-----PY-KKCGKLIVALNE-QLEPLHDLYERSIQNNVK-DVRL-VSAEEIKTIEPYCK---- 188 (473)
Q Consensus 126 ----~~~~~~~~~~~~~-----~~-~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~-~~~~-l~~~~~~~~~p~~~---- 188 (473)
.++|..+.++ ++ +| .++|.+.++.++ +.+.+++.++.+++.++. .+++ ++++++.+++|.+.
T Consensus 81 ~~~s~~~~~~l~~~-g~~~~~~~~~~~~G~L~va~~e~e~~~L~~~~~~~~~~g~~~~~~~~l~~~el~~~eP~l~~~r~ 159 (483)
T TIGR01320 81 FQVSRQFWAHLVEE-GILTDPKSFINPVPHVSFVHGSDGVAYLKKRYEALKGHPLFEGMEFSEDPATFAEWLPLMAAGRD 159 (483)
T ss_pred HHHHHHHHHHHHHc-CCCCChhhhccCCCeEEEEEChHHHHHHHHHHHHHhcCCCccCceEeCCHHHHHHhCCCcccCCC
Confidence 4444444443 32 23 359999999888 899999999998888763 3565 79999999999875
Q ss_pred ---cceeEecCCccceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcC-CeEEEEc---CCC--cEEEcCEEEEcCCcC
Q psy7710 189 ---GVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENP-ESVTIST---KQG--DHLESSYALVCAGLQ 259 (473)
Q Consensus 189 ---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~-~~v~v~~---~~g--~~i~ad~VV~aaG~~ 259 (473)
..+++|.|.++.+||..++..|.+.++++|++|+++++|++|..++ +.|.+++ .+| .+++||+||+|+|+|
T Consensus 160 ~~~~~gAl~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~ 239 (483)
T TIGR01320 160 FSEPVAANWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGG 239 (483)
T ss_pred CCCceEEEEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcc
Confidence 3689999999999999999999999999999999999999998854 4566543 333 368999999999999
Q ss_pred hHHHHHhcCCCC--CCceeeeeeEEEEeCcC-cccCcccccccCCCCCCCccEE-EE-ecCCCCeEE--ECCCcc--ccc
Q psy7710 260 ADEMALKSGCSL--EPAIVPFRGEYLLLNPA-KQHLVRGNIYPVPDPNFPFLGV-HF-TPRMDGSVW--LGPNAV--LAF 330 (473)
Q Consensus 260 s~~l~~~~g~~~--~~~~~p~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~-~p~~~g~~~--iG~~~~--~~~ 330 (473)
+..|++++|+.. ..++.|++||++.++.+ .....+..+|+.+++..|+.++ ++ .+..+|... +|+++. +.+
T Consensus 240 s~~La~~~Gi~~~~~~~i~P~~Gq~l~l~~~~~~~~~~~~IY~v~~p~~p~~~Vph~Dtr~i~G~~~~~~GP~A~~~~~~ 319 (483)
T TIGR01320 240 ALPLLQKSGIPEVKGFAGFPVSGLFLRCGNPELTEQHRAKVYGQASVGAPPMSVPHLDTRVVDGKKWLLFGPYAGWSPKF 319 (483)
T ss_pred hHHHHHHcCCCcCCCCceeeeeEEEEEeCCHHHHhhcCeEEEecCCCCCCCcEEecCCCccccCCEEEEECcCCCcchHh
Confidence 999999999873 56889999999999765 2334456689999887775555 55 333456554 999998 556
Q ss_pred cccCcccccchhHHHhhhccCCcchhc---cchh---hhhchHHHHhhhcchhHHHHHhhcccCCCCCCcccCCCeeceE
Q psy7710 331 KKEGYRWRDFSVRELFSTLRYPGFWRL---GLKY---TRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQ 404 (473)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~ 404 (473)
.++++ ..|++..+...+++++ ..+| +.+.+.++..... ..++.+++++|.+...++....+|+|++
T Consensus 320 ~reg~------~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~--~~~~~~~~~~p~~~~~d~~~~~~GiR~Q 391 (483)
T TIGR01320 320 LKHGS------ILDLPLSIRPDNLLSMLGVGLTEMDLTKYLIGQLRKSEE--ERVSALREFYPEAIDSDWELIVAGQRVQ 391 (483)
T ss_pred hcCCc------hhHHhhcCCHhhHHHHHHHHHhhhHHHHHHHHHHHHhHH--HHHHHHHHhCCCCCHHHcEEccCceEEE
Confidence 66653 2344455666667666 4555 5666666654332 4478999999999999999999999999
Q ss_pred eeCCCC
Q psy7710 405 ALSSSG 410 (473)
Q Consensus 405 ~~t~d~ 410 (473)
..++|+
T Consensus 392 ~i~~~~ 397 (483)
T TIGR01320 392 VIKKDP 397 (483)
T ss_pred EEecCC
Confidence 998883
No 14
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=100.00 E-value=1.6e-35 Score=290.78 Aligned_cols=360 Identities=16% Similarity=0.161 Sum_probs=256.7
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccC-cccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHhc
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGM-HQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDKR 136 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~-~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (473)
+||+|||||++|+++|++|+++ |.+|+|+|+....++ +++..+.+.+.... .......+...+.+.|.++.++.
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~--g~~V~l~e~~~~~~~~~ss~~~~~~~~~~~---~~~~~~~l~~~s~~~~~~l~~~~ 75 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKH--GKKTLLLEQFDLPHSRGSSHGQSRIIRKAY---PEDFYTPMMLECYQLWAQLEKEA 75 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHC--CCeEEEEeccCCCCCCCCCCCCCeeeeecc---CchhHhHHHHHHHHHHHHHHHHh
Confidence 5899999999999999999999 899999999743322 34444555554431 22345678888999999998877
Q ss_pred CCC-CcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcc---cceeEecCCccceeHHHHHHHHHH
Q psy7710 137 NIP-YKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCK---GVKAIHSPNTGIVDWGLVTRVMGE 212 (473)
Q Consensus 137 ~~~-~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~---~~~~~~~~~~~~~~~~~~~~~l~~ 212 (473)
+++ +.++|.+.+...++ +.+.+..+.+.+.|+ +.++++++++.+.+|.+. ...+++.+.++.++|..+++.|.+
T Consensus 76 ~~~~~~~~G~l~~~~~~~-~~~~~~~~~~~~~g~-~~~~l~~~e~~~~~P~l~~~~~~~~~~~~~~g~i~p~~~~~~l~~ 153 (380)
T TIGR01377 76 GTKLHRQTGLLLLGPKEN-QFLKTIQATLSRHGL-EHELLSSKQLKQRFPNIRVPRNEVGLLDPNGGVLYAEKALRALQE 153 (380)
T ss_pred CCeeEeecCeEEEcCCCc-HHHHHHHHHHHHcCC-CeEEcCHHHHHHhCCCCcCCCCceEEEcCCCcEEcHHHHHHHHHH
Confidence 765 46778888765444 566667777778888 789999999999999765 256899999999999999999999
Q ss_pred HHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEeCcCcccC
Q psy7710 213 EFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHL 292 (473)
Q Consensus 213 ~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~~~~~~~~ 292 (473)
.+++.|++++.+++|+++..+++.+.|++.++ +++||.||+|+|.|+..+++++|+.. ++.|.++|++.+.......
T Consensus 154 ~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~~~l~~~~g~~~--~~~~~~~~~~~~~~~~~~~ 230 (380)
T TIGR01377 154 LAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWTSKLLSPLGIEI--PLQPLRINVCYWREKEPGS 230 (380)
T ss_pred HHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcchHHHhhhcccCC--CceEEEEEEEEEecCCccc
Confidence 99999999999999999998888888888877 89999999999999889999888754 7899999987765432211
Q ss_pred cc-cccccCCCCCCCccEEEEecCCCC-eEEECCCcc-ccccccCcccccchhHHHhhhccCCcchhccchhhhhchHHH
Q psy7710 293 VR-GNIYPVPDPNFPFLGVHFTPRMDG-SVWLGPNAV-LAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEM 369 (473)
Q Consensus 293 ~~-~~~~~~~~~~~~~~~~~~~p~~~g-~~~iG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (473)
.. ...+|......+...+|++|..++ .+++|+... ...+++..+... .+ ..
T Consensus 231 ~~~~~~~p~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------------------~~------ 284 (380)
T TIGR01377 231 YGVSQAFPCFLVLGLNPHIYGLPSFEYPGLMKVYYHHGQQIDPDERDCPF-GA-------------------DI------ 284 (380)
T ss_pred cCccCCCCEEEEeCCCCceEecCCCCCCceEEEEeCCCCccCcccccCCC-CC-------------------CH------
Confidence 00 000111000000124788888542 355554321 100000000000 00 00
Q ss_pred HhhhcchhHHHHHhhcccCCCCCCcccCCCeeceEeeCCCCccc-------cccceeeeecCCccccchHHHHHHHHHHH
Q psy7710 370 IMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLV-------DDFGVKAIHSPHTGIVDWGLVTRVMGEEF 442 (473)
Q Consensus 370 ~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~t~d~~p~-------~g~~~~~g~~~~~gi~~~~~~a~~~g~~~ 442 (473)
...+.+.+.+.+++|.+.... .+.|+|+||+ |||+.|+ .|+|+++||++| |+..++.+|..++++|
T Consensus 285 ---~~~~~l~~~~~~~~P~l~~~~-~~~~~~~~~~--t~D~~piIg~~p~~~~l~va~G~~g~-G~~~~p~~g~~la~li 357 (380)
T TIGR01377 285 ---EDVQILRKFVRDHLPGLNGEP-KKGEVCMYTN--TPDEHFVIDLHPKYDNVVIGAGFSGH-GFKLAPVVGKILAELA 357 (380)
T ss_pred ---HHHHHHHHHHHHHCCCCCCCc-ceeeEEEecc--CCCCCeeeecCCCCCCEEEEecCCcc-ceeccHHHHHHHHHHH
Confidence 113455689999999998644 5789999976 8999986 578999999876 5766667777777777
Q ss_pred HhhCCeEecc-cceeeccc
Q psy7710 443 CELGGEIRLN-QQVESFKE 460 (473)
Q Consensus 443 ~~~~~~~~~~-~~~~~~~~ 460 (473)
.......++. ++.+||..
T Consensus 358 ~~~~~~~~~~~f~~~Rf~~ 376 (380)
T TIGR01377 358 MKLKPSYDLAIFSLNRFAL 376 (380)
T ss_pred hcCCCCCCccccChhhccc
Confidence 6665555554 77888864
No 15
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=100.00 E-value=1.6e-34 Score=284.83 Aligned_cols=354 Identities=21% Similarity=0.282 Sum_probs=274.8
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccC--CCcceEEeec---cCCCch----h---HHHHH-
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG--HNSGVVHAGI---YYKPGT----L---KAKLC- 122 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~--~~~g~~~~~~---~~~~~~----~---~~~~~- 122 (473)
..+||+|||||++|+++|+.|++..|+.+|+|+||.+.++..+|+ +|+|..|.+. .|.+.. . ++.-.
T Consensus 5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~sS~~~nNagt~hag~~e~nY~~~~~~g~~~~~ka~~i~ 84 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESSNEWNNAGTGHAALCELNYTVQQPDGSIDIEKAKEIN 84 (497)
T ss_pred ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchhcCCCccccCcceeeehhhccCCcccCCcccHHHHHHHH
Confidence 567999999999999999999999889999999994489999985 5888887775 444422 1 12222
Q ss_pred ---HHhHHHHHHHHHh--cC--CC-CcccCeEEEEeCc-ChhhHHHHHHHHHhCCC-Ccceee-CHHHHHhhcCCcc---
Q psy7710 123 ---VEGMNLAYEYFDK--RN--IP-YKKCGKLIVALNE-QLEPLHDLYERSIQNNV-KDVRLV-SAEEIKTIEPYCK--- 188 (473)
Q Consensus 123 ---~~~~~~~~~~~~~--~~--~~-~~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~-~~~~~l-~~~~~~~~~p~~~--- 188 (473)
..+.++|..+.+. ++ -+ +.+.+++.+...+ +.+.++..++.++..++ +.++++ +++++.+++|.+.
T Consensus 85 ~~~~~s~~f~~~~~~~~~~~~~~~~i~~~~~m~~~~~~~~~~~L~~r~~~~~~~~~f~~~~~~~d~~el~~~~P~l~~~r 164 (497)
T PRK13339 85 EQFEISKQFWGHLVKSGTIGNPREFINPLPHISFVRGKNNVKFLKKRYEALKQHPMFDNIEYTEDIEVMAKWMPLMMPGR 164 (497)
T ss_pred HHHHHHHHHHHhhhhhcCCCChHhhcccCCeEEEEEChHHHHHHHHHHHHhhccCCCCCcEEecCHHHHHHhCCcccCCC
Confidence 3344455444442 11 12 5678999999777 88899999998888764 567999 7999999999875
Q ss_pred ----cceeEecCCccceeHHHHHHHHHHHHHH-cCcEEEeCceEEEEEEc-CCeEEEE---cCCCc--EEEcCEEEEcCC
Q psy7710 189 ----GVKAIHSPNTGIVDWGLVTRVMGEEFCE-LGGEIRLNQQVESFKEN-PESVTIS---TKQGD--HLESSYALVCAG 257 (473)
Q Consensus 189 ----~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~-~~~v~v~---~~~g~--~i~ad~VV~aaG 257 (473)
..+++|.|.++.+|+..+++.|.+.+.+ .|++++++++|++|..+ ++.|.++ +.++. +++||+||+|+|
T Consensus 165 ~~~~~~~Al~~p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAG 244 (497)
T PRK13339 165 EANEIMAASKIDEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAG 244 (497)
T ss_pred CCCcceeEEECCCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCC
Confidence 2789999999999999999999999965 59999999999999877 6677765 44452 689999999999
Q ss_pred cChHHHHHhcCCCC--CCceeeeeeEEEEeCcCcccCcc---cccccCCCCCCCccEE-EE-ecCCCCe--EEECCCccc
Q psy7710 258 LQADEMALKSGCSL--EPAIVPFRGEYLLLNPAKQHLVR---GNIYPVPDPNFPFLGV-HF-TPRMDGS--VWLGPNAVL 328 (473)
Q Consensus 258 ~~s~~l~~~~g~~~--~~~~~p~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~-~p~~~g~--~~iG~~~~~ 328 (473)
+|+..|++++|+.. ..++.|++||++.++++. .+. ..+|+.+++..|..++ ++ .+..+|. +.+|+++.+
T Consensus 245 awS~~La~~~Gi~~~~~~~i~PvkGq~l~l~~~~--~v~~h~~~VY~v~~~~~P~~~VPhlDtr~i~G~~~v~~GP~A~~ 322 (497)
T PRK13339 245 GGAIPLLQKSGIPESKHLGGFPISGQFLRCTNPE--VVKQHQAKVYSKEPVGTPPMTVPHLDTRYIDGKRSLLFGPYAGF 322 (497)
T ss_pred cchHHHHHHcCCCccCCCceEeeeEEEEEecCHH--HhhhcCceEeCCCCCCCCCCcCCCCCCcEEcCceeEEECCCccc
Confidence 99999999999874 268999999999998632 222 3589998877664343 33 3334664 789999886
Q ss_pred c--ccccCcccccchhHHHhhhccCCcc---hhccchhh---hhchHHHHhhhcchhHHHHHhhcccCCCCCCcccCCCe
Q psy7710 329 A--FKKEGYRWRDFSVRELFSTLRYPGF---WRLGLKYT---RYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSG 400 (473)
Q Consensus 329 ~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G 400 (473)
. +.+ ..+..|+++.+.+.++ +....+|. ++.+.+++.. ....++.+++++|.+...++....+|
T Consensus 323 ~~~~~r------~~~~~d~~~~l~~~~~~~~~~~~~~~~~l~~~~~~e~~~~--k~~~~~~~~~~~P~~~~~D~~~~~aG 394 (497)
T PRK13339 323 GPKFLK------HGSNLDLFKSVKPYNITTMLAVAVKNMPLIKYSIDQVMQT--KEGRMNHLRTFYPEARAEDWRLYTAG 394 (497)
T ss_pred hHHHhc------cCCHHHHHHHhCccCcHHHHHHHHhccHHHHHHHHHHhhC--HHHHHHHHHHhCCCCCHHHeeEcCCc
Confidence 5 322 3467778888888666 66667775 7778877754 45678999999999999999999999
Q ss_pred eceEeeCCCCcccccccee
Q psy7710 401 VRAQALSSSGDLVDDFGVK 419 (473)
Q Consensus 401 ~rp~~~t~d~~p~~g~~~~ 419 (473)
+|++..++|+..++||.+-
T Consensus 395 iR~Q~i~~~~~~~~dfl~~ 413 (497)
T PRK13339 395 KRVQVIKDTPEHGKGFIQF 413 (497)
T ss_pred eEEEEEeCCCCccCCEEEe
Confidence 9999999999888888443
No 16
>KOG2844|consensus
Probab=100.00 E-value=3.3e-35 Score=281.83 Aligned_cols=366 Identities=19% Similarity=0.207 Sum_probs=287.5
Q ss_pred CCCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHH
Q psy7710 54 SPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYF 133 (473)
Q Consensus 54 ~~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (473)
.+...||+|||+|..|+++||+|++. |.++.++........+++..+.|.+...+. . +.....+...+...+.++.
T Consensus 36 ~~~~A~vvViggG~~g~~~~yhlak~--g~k~avlle~~~ltsgttwhtagl~~~lr~-~-dv~~qlia~~~~~l~~~le 111 (856)
T KOG2844|consen 36 LPSTADVVVIGGGSLGCSTAYHLAKR--GMKGAVLLERSRLTSGTTWHTAGLLWQLFP-S-DVELQLIAHTSRVLYRELE 111 (856)
T ss_pred CCCcccEEEEcCCchhHHHHHHHHHc--cccceEEEeeeeeccccccccccceeeccC-C-chhHHHHHHHHHHHHHHHH
Confidence 34568999999999999999999999 888555444447888999999999887432 2 2222345556667777888
Q ss_pred HhcCCC--CcccCeEEEEeCc-ChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCccc---ceeEecCCccceeHHHHH
Q psy7710 134 DKRNIP--YKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKG---VKAIHSPNTGIVDWGLVT 207 (473)
Q Consensus 134 ~~~~~~--~~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~ 207 (473)
++.+.. |.++|.+.++.+. ....++.+......+|. ..+++++++..+++|.++. .+++|.|.+|.+||..++
T Consensus 112 eEtgl~tGwiq~G~~~lAs~~~R~de~kR~~S~g~a~g~-e~~lLsPee~~~~~pLLn~d~v~g~Ly~P~DG~~DP~~lC 190 (856)
T KOG2844|consen 112 EETGLHTGWIQNGGIFLASNRQRLDEYKRLMSRGKAHGV-ESELLSPEETQELFPLLNVDDVYGGLYSPGDGVMDPAGLC 190 (856)
T ss_pred HhcCCCcceecCCceEEecCHHHHHHHHHHHHhhhhccc-eeeecCHHHHHHhCcccchhHheeeeecCCCcccCHHHHH
Confidence 888865 9999999999999 88888888888888998 8999999999999999875 789999999999999999
Q ss_pred HHHHHHHHHcCcEEEeCceEEEEEEcC-CeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEeC
Q psy7710 208 RVMGEEFCELGGEIRLNQQVESFKENP-ESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLN 286 (473)
Q Consensus 208 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~-~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~~ 286 (473)
.+|+..+++.|+.|+.+|+|++|.... +.+.|+|..| .++|.+||+|||.|+..+..+.|++. |++|+..++++++
T Consensus 191 ~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWAr~Vg~m~gvkv--PL~p~~H~YvvT~ 267 (856)
T KOG2844|consen 191 QALARAASALGALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWAREVGAMAGVKV--PLVPMHHAYVVTS 267 (856)
T ss_pred HHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHHHHhhhhcCCcc--cceeeeeeEEEec
Confidence 999999999999999999999998655 4457999999 89999999999999999999999775 8999999999998
Q ss_pred cCcccCcccccccCCCCCCCccEEEEecCCCCeEEECCCccccccccCcccccchhHHHhhhccCCcchhccchhhhhch
Q psy7710 287 PAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGS 366 (473)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (473)
+.+..... +.|..+.-...+|++.+.++ +..|+........++... .+....
T Consensus 268 ~IeGi~s~----t~p~irD~DgSvylR~~~~g-il~GGyE~n~i~~egv~~-----------------------~~~~~l 319 (856)
T KOG2844|consen 268 RIEGVSSL----TRPNIRDLDGSVYLRQQGDG-ILFGGYESNPIFTEGVPP-----------------------GFATGL 319 (856)
T ss_pred ccCCccCC----CccceecccceEEEEecCCc-eeccccccCceeccccCC-----------------------cccccc
Confidence 76532111 11111111235799888655 667776432211111100 011112
Q ss_pred HHHHhhhcchhHHHHHhhcccCCCCCCcccCCCeeceEeeCCCCccc-------cccceeeeecCCccccchHHHHHHHH
Q psy7710 367 KEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLV-------DDFGVKAIHSPHTGIVDWGLVTRVMG 439 (473)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~t~d~~p~-------~g~~~~~g~~~~~gi~~~~~~a~~~g 439 (473)
+|... ...+..++.+.++.|.|++..|.+.-+|.. ++|||.+|+ .|+|+++|+++ .|++.+|++++.++
T Consensus 320 qE~DW-d~F~~hlesai~r~P~l~k~~i~~~v~gpe--~ftPD~~p~mGe~p~~~gy~v~~G~ns-~G~~~~GG~Gk~la 395 (856)
T KOG2844|consen 320 QEPDW-DHFEPHLEAAIERVPVLEKAGIKSLVNGPE--TFTPDHLPIMGESPEVRGYWVACGFNS-AGLSFGGGCGKYLA 395 (856)
T ss_pred ccccH-hhhHHHHHHHHHhCchhhhcCccceecCcc--ccCCccccccCCCccccceEEeecCCc-cceeccCchhHHHH
Confidence 22111 122566799999999999999999999987 559999986 69999999986 47888999999999
Q ss_pred HHHHhhCCeEecc-cceeecc
Q psy7710 440 EEFCELGGEIRLN-QQVESFK 459 (473)
Q Consensus 440 ~~~~~~~~~~~~~-~~~~~~~ 459 (473)
+||+++.++.++. .++.||-
T Consensus 396 ~wi~~g~p~~d~~~~D~~Rf~ 416 (856)
T KOG2844|consen 396 EWIIHGQPPLDVHELDLRRFG 416 (856)
T ss_pred HHhhcCCCCccchhccHHHhh
Confidence 9999999999888 8999996
No 17
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=100.00 E-value=4.2e-35 Score=305.15 Aligned_cols=346 Identities=14% Similarity=0.151 Sum_probs=250.3
Q ss_pred cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHH----HhHHHHHHH
Q psy7710 57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCV----EGMNLAYEY 132 (473)
Q Consensus 57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 132 (473)
.+||+|||||++|+++|++|+++ |.+|+|+|++..++.++|+++.|++++.+..... ...++.. .+.+.|.++
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~--G~~V~VlE~~~~~~~gaSg~~~G~l~~~~~~~~~-~~~~l~~~a~~~a~~~~~~l 336 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARR--GWQVTLYEADEAPAQGASGNRQGALYPLLSKDDN-ALSRFFRAAFLFARRFYDAL 336 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHC--CCeEEEEecCCCccccCCcCcccccccccCCCCC-HHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999 9999999998668899999999999876533222 2233333 455666666
Q ss_pred HHhcC--CCCcccCeEEEEeCc-ChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHH
Q psy7710 133 FDKRN--IPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRV 209 (473)
Q Consensus 133 ~~~~~--~~~~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 209 (473)
. +.+ ..+..+|.+.++.++ +.+.+.+..+.... +. ..++++.+++.+..+.....++++.+.+++++|..++..
T Consensus 337 ~-~~~~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~-~~-~~~~l~~~e~~~~~~~~~~~~g~~~p~~G~v~p~~l~~a 413 (662)
T PRK01747 337 P-AAGVAFDHDWCGVLQLAWDEKSAEKIAKMLALGLP-AE-LARALDAEEAEELAGLPVPCGGIFYPQGGWLCPAELCRA 413 (662)
T ss_pred H-hcCCCCCCCCCceEEeecCchHHHHHHHHHhccCc-hH-hhhhCCHHHHHHHhCCCCCCCcEEeCCCCeeCHHHHHHH
Confidence 5 334 356778999998877 66556555543322 22 367889999888877555578999999999999999999
Q ss_pred HHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEeCcCc
Q psy7710 210 MGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAK 289 (473)
Q Consensus 210 l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~~~~~ 289 (473)
|.+.+++ |++++++++|+++..++++|.|++++|..++||.||+|+|.|+..+.+.. ..++.|+|||++.++...
T Consensus 414 L~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s~~l~~~~----~lpl~p~RGqv~~~~~~~ 488 (662)
T PRK01747 414 LLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDAARFAQTA----HLPLYSVRGQVSHLPTTP 488 (662)
T ss_pred HHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCcccccccc----CCCcccccceEEeecCCc
Confidence 9999999 99999999999999888888899888866789999999999998776643 347899999999886543
Q ss_pred ccCcccccccCCCCCCCccEEEEec-CCCCeEEECCCccccccccCcccccchhHHHhhhccCCcchhccchhhhhchHH
Q psy7710 290 QHLVRGNIYPVPDPNFPFLGVHFTP-RMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKE 368 (473)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (473)
... ...... ..+.|++| ..+|.+++|++.+.. +.+. ..+.. .
T Consensus 489 ~~~-------~~~~~~-~~~~Y~~p~~~~g~~~iGat~~~~----~~~~-~~~~~---------------------~--- 531 (662)
T PRK01747 489 ALS-------ALKQVL-CYDGYLTPQPANGTHCIGASYDRD----DTDT-AFREA---------------------D--- 531 (662)
T ss_pred ccc-------ccCcee-ECCceeCCCCCCCceEeCcccCCC----CCCC-CCCHH---------------------H---
Confidence 211 000001 12469999 778899999986532 1110 00110 0
Q ss_pred HHhhhcchhHHHHHhhcccCC-----CCCCcccCCCeeceEeeCCCCcccc-----------------------------
Q psy7710 369 MIMSWFPSMRVNELKQYIEEI-----EAGDIQRGPSGVRAQALSSSGDLVD----------------------------- 414 (473)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~P~l-----~~~~i~~~w~G~rp~~~t~d~~p~~----------------------------- 414 (473)
.+.+++.+.+++|.+ .+.++.+.|+|+||+ |+|+.|++
T Consensus 532 ------~~~~~~~l~~~~P~l~~~~~~~~~~~~~~aG~R~~--tpD~~PiIG~~~~~~~~~~~y~~l~~~~~~~~~~~~~ 603 (662)
T PRK01747 532 ------HQENLERLAECLPQALWAKEVDVSALQGRVGFRCA--SRDRLPMVGNVPDEAATLAEYAALANQQPARDAPRLP 603 (662)
T ss_pred ------HHHHHHHHHHhCCCchhhhccCccccCceEEEecc--CCCcccccCCCCCHHHHHHHHHhhhhccccccCCCCC
Confidence 234468899999987 567889999999987 89998864
Q ss_pred ccceeeeecCCccccchHHHHHHHHHHHHhhCCeEe----cccceeecc
Q psy7710 415 DFGVKAIHSPHTGIVDWGLVTRVMGEEFCELGGEIR----LNQQVESFK 459 (473)
Q Consensus 415 g~~~~~g~~~~~gi~~~~~~a~~~g~~~~~~~~~~~----~~~~~~~~~ 459 (473)
|+|+++||+++ |+..++.+|+.++++|+....+++ ..++-.||.
T Consensus 604 gl~v~~G~gs~-Gl~~ap~~a~~lA~li~g~~~p~~~~~~~~~~p~Rf~ 651 (662)
T PRK01747 604 GLYVAGALGSR-GLCSAPLGAELLASQIEGEPLPLERDLLAALHPNRFW 651 (662)
T ss_pred CeEEEeccccc-HHHHHHHHHHHHHHHHhCCCCCCCHHHHHhhChHHHH
Confidence 56899998775 575555556666665543222222 235555664
No 18
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=100.00 E-value=9.3e-34 Score=287.44 Aligned_cols=302 Identities=20% Similarity=0.286 Sum_probs=225.9
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCC-chhHHHHHHHhHHHHHHHHH
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKP-GTLKAKLCVEGMNLAYEYFD 134 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 134 (473)
..+||+|||||++|+++|++|+++ |++|+|||++ .++.++|++|.|++|.+..|.. .....+.+..+.+.+.++..
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~r--G~~V~LlEk~-d~~~GaS~~~~gllh~g~ry~~~~~~~~~~~~~e~~~l~~~a~ 81 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCALR--GLRCILVERH-DIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIAR 81 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHHc--CCeEEEEECC-CCCCCcccccccceeccchhcccCHHHHHHHHHHHHHHHHhch
Confidence 468999999999999999999999 9999999997 7899999999999999876542 33334455555555555544
Q ss_pred hcCCCCcccCeEEEEeCc-ChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCccc--ceeEecCCccceeHHHHHHHHH
Q psy7710 135 KRNIPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKG--VKAIHSPNTGIVDWGLVTRVMG 211 (473)
Q Consensus 135 ~~~~~~~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~l~ 211 (473)
.. +.+.+.+.+...+ +...+...+..+...|+ +.++++++++.+++|.++. .++++.+ ++++||.+++..+.
T Consensus 82 ~~---~~~~g~l~~~~~~~~~~~~~~~~~~~~~~Gi-~~~~l~~~e~~~~eP~l~~~~~ga~~~~-dg~vdp~rl~~al~ 156 (546)
T PRK11101 82 HC---VEPTDGLFITLPEDDLAFQATFIRACEEAGI-EAEAIDPQQALILEPAVNPALIGAVKVP-DGTVDPFRLTAANM 156 (546)
T ss_pred Hh---hcccCCceEEeccccHHHHHHHHHHHHHcCC-CcEEECHHHHHHhCCCcCccceEEEEec-CcEECHHHHHHHHH
Confidence 32 4556667776666 66666677777788888 6899999999999998865 6788888 58999999999999
Q ss_pred HHHHHcCcEEEeCceEEEEEEcCCeEE-EEc---CCC--cEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEe
Q psy7710 212 EEFCELGGEIRLNQQVESFKENPESVT-IST---KQG--DHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLL 285 (473)
Q Consensus 212 ~~~~~~Gv~i~~~~~V~~i~~~~~~v~-v~~---~~g--~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~ 285 (473)
+.++++|++++++++|+++..+++++. |++ .++ .+++||.||+|+|.|+..|.+++|++ .++.|.||+++.+
T Consensus 157 ~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~g~~--~~i~p~kG~~lv~ 234 (546)
T PRK11101 157 LDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYADLR--IRMFPAKGSLLIM 234 (546)
T ss_pred HHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHHhcCCC--CceeecceEEEEE
Confidence 999999999999999999988776542 442 222 37999999999999999999988865 4899999999999
Q ss_pred CcCcccCcccccccCCCCCCCccEEEEecCCCCeEEECCCccccccccCcccccchhHHHhhhccCCcchhccchhhhhc
Q psy7710 286 NPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYG 365 (473)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (473)
+..... ..++.++. |..+.++.|. ++.+++|+|.+... .++. .+..+ +.++
T Consensus 235 ~~~~~~---~vi~~~~~---~~~~~~~vp~-~~~~liGtT~~~~~-~~~~--~~~~~-------------------t~~~ 285 (546)
T PRK11101 235 DHRINN---HVINRCRK---PADADILVPG-DTISLIGTTSTRID-YDQI--DDNRV-------------------TAEE 285 (546)
T ss_pred CCccCc---eeEeccCC---CCCCCEEEec-CCEEEEeeCCCCcc-CCCc--CCCCC-------------------CHHH
Confidence 754321 11222211 1223356674 67789999865321 0000 00011 1111
Q ss_pred hHHHHhhhcchhHHHHHhhcccCCCCCCcccCCCeeceEe
Q psy7710 366 SKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQA 405 (473)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~ 405 (473)
++.+++.+.+++|.|...+|++.|+|+||..
T Consensus 286 ---------i~~Ll~~~~~l~P~l~~~~i~~~~aGvRPl~ 316 (546)
T PRK11101 286 ---------VDILLREGEKLAPVMAKTRILRAYAGVRPLV 316 (546)
T ss_pred ---------HHHHHHHHHHhCCCCCccCEEEEEEEeccCC
Confidence 3456689999999999999999999999974
No 19
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-33 Score=276.78 Aligned_cols=349 Identities=23% Similarity=0.248 Sum_probs=255.1
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCC-chhHHHHHHHhHHHHHHHHH
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKP-GTLKAKLCVEGMNLAYEYFD 134 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 134 (473)
.++||+|||||++|+++||+|+++ |.+|+|+|++ .++.++|+++.+.+...+.... ......+...+...|..+.+
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~--G~~V~vie~~-~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAER--GADVTVLEAG-EAGGGAAGRNAGGILAPWASPGGELEVRPLADLSLALWRELSE 79 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHc--CCEEEEEecC-ccCCcchhcchhhhccccccCCccchhhhhhHHHHHHHHHHHH
Confidence 578999999999999999999999 8899999998 6777888888887776554322 22345567777788888887
Q ss_pred hcCC--CCcccCeEEEEeCcC---hhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCccc---ceeEecCCccceeHHHH
Q psy7710 135 KRNI--PYKKCGKLIVALNEQ---LEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKG---VKAIHSPNTGIVDWGLV 206 (473)
Q Consensus 135 ~~~~--~~~~~g~l~~~~~~~---~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~ 206 (473)
.... .+...+.+....... ........+....... ..+.++..+..+..|.+.. .++++.+..+.++|..+
T Consensus 80 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~l~~~~~~~a~~~~~~~~~~p~~~ 158 (387)
T COG0665 80 ELGTGAGLRRRGLLDLAAREGLKGLAQLERLAAELEAAGE-DAELLDAAEAAELEPALGPDFVCGGLFDPTGGHLDPRLL 158 (387)
T ss_pred HhCcchhcchhhhhhhhhccccchHHHHHHHHHHHHhcCC-CceeCCHHHHHHhCCCCCcccceeeEecCCCCcCCHHHH
Confidence 7664 466777776665542 1233444444444444 3357888899999987764 58899999999999999
Q ss_pred HHHHHHHHHHcC-cEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEe
Q psy7710 207 TRVMGEEFCELG-GEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLL 285 (473)
Q Consensus 207 ~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~ 285 (473)
+..+.+.++++| ..+..++.|..+..+++.+.|.|.+| ++.||.||+|+|+|+..+...++ ....++.|+++|++.+
T Consensus 159 ~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g-~i~a~~vv~a~G~~~~~l~~~~~-~~~~~~~p~~~~~~~~ 236 (387)
T COG0665 159 TRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGG-TIEADKVVLAAGAWAGELAATLG-ELPLPLRPVRGQALTT 236 (387)
T ss_pred HHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCc-cEEeCEEEEcCchHHHHHHHhcC-CCcCccccccceEEEe
Confidence 999999999999 46666889998887435678999999 69999999999999999999998 3345899999999999
Q ss_pred CcCcccCcccccccCCCCCCCccEEEEecCCCCeEEECCCccccccccCcccccchhHHHhhhccCCcchhccchhhhhc
Q psy7710 286 NPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYG 365 (473)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (473)
++.......... + ..........|++|..++++++|++.+... +. +.++. .
T Consensus 237 ~~~~~~~~~~~~-~-~~~~~~~~~~y~~~~~~g~~~~g~~~~~~~-----~~-~~~~~-------------------~-- 287 (387)
T COG0665 237 EPPEGLLADGLA-P-VVLVVDDGGGYIRPRGDGRLRVGGTDEEGG-----DD-PSDPE-------------------R-- 287 (387)
T ss_pred cCCCcccccccc-c-eEEEecCCceEEEEcCCCcEEEeecccccC-----CC-Ccccc-------------------C--
Confidence 877543211100 0 000111235799999899999999865431 00 00000 0
Q ss_pred hHHHHhhhcchhHHHHHhhcccCCCCCCcccCCCeeceEeeCCCCccccc-------cceeeeecCCccccchHHHHHHH
Q psy7710 366 SKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDD-------FGVKAIHSPHTGIVDWGLVTRVM 438 (473)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~t~d~~p~~g-------~~~~~g~~~~~gi~~~~~~a~~~ 438 (473)
.+. ....+++.+.+++|.+.+..+...|+|+||.+ +||+.|++| +|+++||++| |+..++.+|..+
T Consensus 288 ~~~-----~~~~l~~~~~~~~P~l~~~~~~~~w~g~~~~t-~pd~~P~iG~~~~~~~l~~a~G~~~~-G~~~~p~~g~~l 360 (387)
T COG0665 288 EDL-----VIAELLRVARALLPGLADAGIEAAWAGLRPPT-TPDGLPVIGRAAPLPNLYVATGHGGH-GFTLAPALGRLL 360 (387)
T ss_pred cch-----hHHHHHHHHHHhCccccccccceeeeccccCC-CCCCCceeCCCCCCCCEEEEecCCCc-ChhhccHHHHHH
Confidence 000 12355699999999999999999999999872 399999855 8999999876 575555555555
Q ss_pred HHHHHhhC
Q psy7710 439 GEEFCELG 446 (473)
Q Consensus 439 g~~~~~~~ 446 (473)
++++....
T Consensus 361 A~li~g~~ 368 (387)
T COG0665 361 ADLILGGE 368 (387)
T ss_pred HHHHcCCC
Confidence 55555543
No 20
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=100.00 E-value=1.2e-32 Score=266.06 Aligned_cols=316 Identities=20% Similarity=0.289 Sum_probs=242.2
Q ss_pred HHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCC-CchhHHHHHHHhHHHHHHHHHhc----C--CCCcccCeE
Q psy7710 74 RELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYK-PGTLKAKLCVEGMNLAYEYFDKR----N--IPYKKCGKL 146 (473)
Q Consensus 74 ~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~g~l 146 (473)
|+|+++ |.+|+|||++ .++.++|++|+|++.+..... .......+...+.+.|.++.++. + ..+.+.|.+
T Consensus 1 ~~La~~--G~~V~vle~~-~~~~gaS~~~~g~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~~~~~~~~~~G~l 77 (337)
T TIGR02352 1 WELAKR--GHSVTLFDRD-PMGGGASWAAAGMLAPHAECEYAEDPLFDLALESLRLYPEWLEALKELTGLDTGYHQCGTL 77 (337)
T ss_pred ChHHHC--CCceEEEcCC-CCCcccchhhhcCcccccccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCcCeEEccEE
Confidence 578999 8999999998 599999999999987653211 22234667888889998887654 3 456789999
Q ss_pred EEEeCc-ChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCccc--ceeEecCCccceeHHHHHHHHHHHHHHcCcEEEe
Q psy7710 147 IVALNE-QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKG--VKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRL 223 (473)
Q Consensus 147 ~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~ 223 (473)
.++.++ +.+.+++..+..+..+. ..++++.+++.+.+|.+.. .++++.+.+|+++|..++..|.+.++++|+++++
T Consensus 78 ~~a~~~~~~~~l~~~~~~~~~~~~-~~~~l~~~e~~~~~p~l~~~~~~g~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~ 156 (337)
T TIGR02352 78 VVAFDEDDVEHLRQLADLQSATGM-EVEWLSGRALRRLEPYLSGGIRGAVFYPDDAHVDPRALLKALEKALEKLGVEIIE 156 (337)
T ss_pred EEeCCHHHHHHHHHHHHHHHhcCC-ceEEcCHHHHHHhCCCCCcccceEEEcCCCceEChHHHHHHHHHHHHHcCCEEEc
Confidence 999887 88888888888888887 7899999999999988753 6899999999999999999999999999999999
Q ss_pred CceEEEEEEcCCeE-EEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEeCcCcccCcccccccCCC
Q psy7710 224 NQQVESFKENPESV-TISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPD 302 (473)
Q Consensus 224 ~~~V~~i~~~~~~v-~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~ 302 (473)
+++|++|..+++.+ .|.+++| +++||.||+|+|+|+..|.. .++.|++||++.++++....... +...
T Consensus 157 ~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~~l~~-------~~~~~~~g~~~~~~~~~~~~~~~---~~~~ 225 (337)
T TIGR02352 157 HTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAGELLP-------LPLRPVRGQPLRLEAPAVPLLNR---PLRA 225 (337)
T ss_pred cceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhhhccc-------CCccccCceEEEeeccccccCCc---ccce
Confidence 99999999877765 4888888 89999999999999987754 36789999999987552111000 1100
Q ss_pred CCCCccEEEEecCCCCeEEECCCccccccccCcccccchhHHHhhhccCCcchhccchhhhhchHHHHhhhcchhHHHHH
Q psy7710 303 PNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNEL 382 (473)
Q Consensus 303 ~~~~~~~~~~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (473)
.......|++|..+|++++|++.... ..+. ..+. +..+.+++.+
T Consensus 226 -~~~~~~~y~~p~~~g~~~iG~~~~~~----~~~~-~~~~------------------------------~~~~~l~~~~ 269 (337)
T TIGR02352 226 -VVYGRRVYIVPRRDGRLVVGATMEES----GFDT-TPTL------------------------------GGIKELLRDA 269 (337)
T ss_pred -EEEcCCEEEEEcCCCeEEEEEecccc----CccC-CCCH------------------------------HHHHHHHHHH
Confidence 00122479999988999999875421 1110 0000 0134556899
Q ss_pred hhcccCCCCCCcccCCCeeceEeeCCCCccc-------cccceeeeecCCccccchHHHHHHHHHHHH
Q psy7710 383 KQYIEEIEAGDIQRGPSGVRAQALSSSGDLV-------DDFGVKAIHSPHTGIVDWGLVTRVMGEEFC 443 (473)
Q Consensus 383 ~~~~P~l~~~~i~~~w~G~rp~~~t~d~~p~-------~g~~~~~g~~~~~gi~~~~~~a~~~g~~~~ 443 (473)
.++||.+.+.++.+.|+|+||+ |+|+.|+ .|+|+++||+++ |+..++.+|..++++|.
T Consensus 270 ~~~~P~l~~~~~~~~~~g~r~~--t~D~~piig~~~~~~~~~~~~g~~g~-G~~~~p~~g~~la~~i~ 334 (337)
T TIGR02352 270 YTILPALKEARLLETWAGLRPG--TPDNLPYIGEHPEDRRLLIATGHYRN-GILLAPATAEVIADLIL 334 (337)
T ss_pred HHhCCCcccCcHHHheecCCCC--CCCCCCEeCccCCCCCEEEEcccccC-ceehhhHHHHHHHHHHh
Confidence 9999999999999999999987 8999987 468999999876 57555555555555544
No 21
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=100.00 E-value=7.5e-33 Score=271.17 Aligned_cols=316 Identities=16% Similarity=0.184 Sum_probs=230.7
Q ss_pred HHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHH----HhHHHHHHHHHh-cCCCCcccCeE
Q psy7710 72 TARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCV----EGMNLAYEYFDK-RNIPYKKCGKL 146 (473)
Q Consensus 72 ~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~g~l 146 (473)
+||+|+++ |.+|+|||++..++.++|+++.|++++........ ..++.. .+.+.|.++.++ ....+.+.|.+
T Consensus 1 ~A~~La~~--G~~V~vlE~~~~~~~gaSg~~~G~l~~~~~~~~~~-~~~l~~~~~~~a~~l~~~l~~~~~~~~~~~~G~L 77 (381)
T TIGR03197 1 TAYSLARR--GWQVTLYEQDEAPAQGASGNPQGALYPLLSADDNP-LSRFFLAAFLYARRFYRQLAEAGFPFDHEWCGVL 77 (381)
T ss_pred ChHHHHhC--CCeeEEEeCCCcccccCCCChhheeeeecCCCCCH-HHHHHHHHHHHHHHHHHHHHhcCCCcccccCceE
Confidence 58999999 99999999975689999999999998865433322 233433 445556665443 12357789999
Q ss_pred EEEeCc-ChhhHHHHHHHHHhCCCC--cceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHHHHcCcEEEe
Q psy7710 147 IVALNE-QLEPLHDLYERSIQNNVK--DVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRL 223 (473)
Q Consensus 147 ~~~~~~-~~~~~~~~~~~~~~~g~~--~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~ 223 (473)
.++.++ +.+.+.+.. ...+.+ ..++++.+++....+.....++++.+.++++||..++..|.+.+++ |+++++
T Consensus 78 ~~a~~~~~~~~l~~~~---~~~~~~~~~~~~l~~~e~~~~~~~~~~~gal~~~~~g~idp~~~~~~l~~~~~~-G~~i~~ 153 (381)
T TIGR03197 78 QLAYDEKEAERLQKLL---EQLGFPEELARWVDAEQASQLAGIPLPYGGLFFPQGGWLSPPQLCRALLAHAGI-RLTLHF 153 (381)
T ss_pred EecCChHHHHHHHHHH---HhcCCCHHHheeCCHHHHHHhcCCCCCCCceEeCCCcccChHHHHHHHHhccCC-CcEEEe
Confidence 998776 555444433 334442 1457888898888765444688999999999999999999999999 999999
Q ss_pred CceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEeCcCcccCcccccccCCCC
Q psy7710 224 NQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDP 303 (473)
Q Consensus 224 ~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~ 303 (473)
+++|.+|..+++++.|+|.+|..++||.||+|+|.|+..+.+.. ..++.|+|||++.+.++.... ..+..
T Consensus 154 ~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~~~l~~~~----~~pi~p~rg~~~~~~~~~~~~----~~~~~-- 223 (381)
T TIGR03197 154 NTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAGQLAQTA----HLPLRPVRGQVSHLPATEALS----ALKTV-- 223 (381)
T ss_pred CCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCcccccccccc----cCCccccccceeeccCCCccc----ccCce--
Confidence 99999999888888999988866999999999999998887653 347899999999987543110 00100
Q ss_pred CCCccEEEEecCCCCeEEECCCccccccccCcccccchhHHHhhhccCCcchhccchhhhhchHHHHhhhcchhHHHHHh
Q psy7710 304 NFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELK 383 (473)
Q Consensus 304 ~~~~~~~~~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (473)
. ..+.|++|+.+|++++|++.+.. ..+. ..+. . ..+.+++.+.
T Consensus 224 -~-~~~~y~~p~~~g~~~iG~t~~~~----~~~~-~~~~---------------------~---------~~~~~~~~~~ 266 (381)
T TIGR03197 224 -L-CYDGYLTPANNGEHCIGASYDRN----DDDL-ALRE---------------------A---------DHAENLERLA 266 (381)
T ss_pred -E-eCCceecccCCCceEeecccCCC----CCCC-CcCH---------------------H---------HHHHHHHHHH
Confidence 0 12359999999999999875432 1110 0000 0 1234568999
Q ss_pred hcccCCC-----CCCcccCCCeeceEeeCCCCcccc--------------------------------ccceeeeecCCc
Q psy7710 384 QYIEEIE-----AGDIQRGPSGVRAQALSSSGDLVD--------------------------------DFGVKAIHSPHT 426 (473)
Q Consensus 384 ~~~P~l~-----~~~i~~~w~G~rp~~~t~d~~p~~--------------------------------g~~~~~g~~~~~ 426 (473)
+++|.+. +.++++.|+|+||+ |+|+.|++ |+|+++||+++
T Consensus 267 ~~~P~l~~~~~~~~~~~~~~~G~r~~--t~D~~Piig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~G~~g~- 343 (381)
T TIGR03197 267 ECLPALAWASEVDISALQGRVGVRCA--SPDHLPLVGAVPDFEAIKEAYAELAKDKNRPIAEPAPYYPGLYVLGGLGSR- 343 (381)
T ss_pred HhCcccchhhccCccccCceEEEecc--CCCcCccCCCCCCHHHHHHHHHHhcccccccccccCCCCCCeEEEecccch-
Confidence 9999997 78999999999987 89998873 58999998765
Q ss_pred cccchHHHHHHHHHHHHh
Q psy7710 427 GIVDWGLVTRVMGEEFCE 444 (473)
Q Consensus 427 gi~~~~~~a~~~g~~~~~ 444 (473)
|+..++.+|+.++++|+.
T Consensus 344 G~~~ap~~g~~la~~i~~ 361 (381)
T TIGR03197 344 GLTSAPLAAEILAAQICG 361 (381)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 676555666666666643
No 22
>KOG2853|consensus
Probab=100.00 E-value=1.3e-31 Score=238.20 Aligned_cols=360 Identities=16% Similarity=0.161 Sum_probs=249.3
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcC--CCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHH
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNY--PKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYF 133 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~--~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (473)
.++||+|||||..|+++|++|.++. -|++|+|+|+++.....++..+.|.+...+.. |+.. .+...+.+.++..-
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFSl-pEnI--qmSLF~a~Flr~a~ 161 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFSL-PENI--QMSLFTAEFLRNAR 161 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeeccc-chhh--hhhhHHHHHHHHHH
Confidence 4789999999999999999997642 26999999999777666677777777766543 3222 23334444444433
Q ss_pred Hhc--------CCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCccc----ceeEecCCccce
Q psy7710 134 DKR--------NIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKG----VKAIHSPNTGIV 201 (473)
Q Consensus 134 ~~~--------~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~----~~~~~~~~~~~~ 201 (473)
+.+ ++.|.+.|++.++.+++.+.+....+...+.|. ..++++++++.+.+|+++. .+.+-...+|++
T Consensus 162 ehl~~~d~~~vdl~f~P~GyL~LA~ee~ae~m~s~~kvQ~e~GA-k~eLls~d~Lt~rfPwlntegVaLa~lG~e~EGwf 240 (509)
T KOG2853|consen 162 EHLGILDSEQVDLNFFPTGYLRLASEEEAEMMRSNSKVQNELGA-KVELLSPDELTKRFPWLNTEGVALASLGVEKEGWF 240 (509)
T ss_pred HhhccccCCCCCcccCCCceEEEcchhhHHHHHHhHHHHHhhcc-hhcccCHHHHhhhCCcccccceeeeeccccccccc
Confidence 333 345889999999996688888888888888888 7899999999999999885 344456789999
Q ss_pred eHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcC----------C----------eEEEEcCCC--cEEEcCEEEEcCCcC
Q psy7710 202 DWGLVTRVMGEEFCELGGEIRLNQQVESFKENP----------E----------SVTISTKQG--DHLESSYALVCAGLQ 259 (473)
Q Consensus 202 ~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~----------~----------~v~v~~~~g--~~i~ad~VV~aaG~~ 259 (473)
||..+...+.+.+...|+.+. +-+|+.++.+. + ++.|+.+++ +.+++..+|+|+|+|
T Consensus 241 dpw~LLs~~rrk~~~lGv~f~-~GeV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aAGa~ 319 (509)
T KOG2853|consen 241 DPWALLSGIRRKAITLGVQFV-KGEVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAAGAW 319 (509)
T ss_pred CHHHHHHHHHHHhhhhcceEe-cceEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCceeEEEEEeccCcc
Confidence 999999999999999999986 55677776542 1 234555554 468899999999999
Q ss_pred hHHHHHhcCCCCC-------CceeeeeeEEEEeCcCcccCcccccccCCCCCCCccEEEEecCCCC-eEEECCCcccccc
Q psy7710 260 ADEMALKSGCSLE-------PAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDG-SVWLGPNAVLAFK 331 (473)
Q Consensus 260 s~~l~~~~g~~~~-------~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g-~~~iG~~~~~~~~ 331 (473)
|.++++++||... .|+.|.|-++.++..+... .. ..|-... ..|+|++...-| +++.|-+.... .
T Consensus 320 s~QvArlAgIG~g~g~L~vplPiepRKRyvyvi~~~~~P---Gl--~~Pl~iD-psG~f~Rrdglg~nfl~grsp~ed-~ 392 (509)
T KOG2853|consen 320 SGQVARLAGIGKGPGLLAVPLPIEPRKRYVYVIFAPDVP---GL--DTPLTID-PSGVFFRRDGLGGNFLCGRSPSED-E 392 (509)
T ss_pred HHHHHHHhccCCCCceeeecccCCccceeEEEEeCCCCC---CC--CCceeEC-CCccEEEecCCCCceecccCCccc-c
Confidence 9999999988743 3566667666666544211 00 1111111 238899887544 45554332111 1
Q ss_pred ccCcccccchhHHHhhhccCCcchhccchhhhhchHHHHhhhcchhHHHHHhhcccCCCCCCcccCCCeeceEeeCCCCc
Q psy7710 332 KEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGD 411 (473)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~t~d~~ 411 (473)
..+++..+.| .+.|.+.++..+...+|.+..++|++.|+|++... |-|..
T Consensus 393 ~~d~~nldVD-----------------------------~d~F~qkiwP~L~nRVP~fetakVqsaWaGyyD~N-tfD~n 442 (509)
T KOG2853|consen 393 EPDHSNLDVD-----------------------------HDYFYQKIWPHLANRVPAFETAKVQSAWAGYYDHN-TFDDN 442 (509)
T ss_pred CCCccccccC-----------------------------hHHHHhhhhHHHHhcccccceeeeeehhccccccc-ccccC
Confidence 1122222222 23455677899999999999999999999999862 44433
Q ss_pred ------cc-cccceeeeecCCccccchHHHHHHHHHHHHhh-CCeEecc-cceeec
Q psy7710 412 ------LV-DDFGVKAIHSPHTGIVDWGLVTRVMGEEFCEL-GGEIRLN-QQVESF 458 (473)
Q Consensus 412 ------p~-~g~~~~~g~~~~~gi~~~~~~a~~~g~~~~~~-~~~~~~~-~~~~~~ 458 (473)
|. .++|++|||++|+ +.-++.++.+++++|.++ --.|+++ +..+||
T Consensus 443 gViG~HP~y~Nly~atGFsghG-vqqs~avgRAiaElIldG~f~tidLsrf~f~Rl 497 (509)
T KOG2853|consen 443 GVIGEHPLYTNLYMATGFSGHG-VQQSPAVGRAIAELILDGAFITIDLSRFDFRRL 497 (509)
T ss_pred CcccCCcceeeeeeeecccccc-hhcchHHHHHHHHHHhcCceeEEeccccchhHH
Confidence 32 6899999999984 766666666666666655 3344444 444444
No 23
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=100.00 E-value=9.5e-31 Score=268.15 Aligned_cols=315 Identities=16% Similarity=0.173 Sum_probs=208.8
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCch------hHHHHHHHhHHHH
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGT------LKAKLCVEGMNLA 129 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~------~~~~~~~~~~~~~ 129 (473)
.++||+|||||++|+++|++|+++ |++|+|||++ .+++++|+++.+++|.+..|.... ....+.+.+....
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~r--Gl~V~LvE~~-d~a~GtSsrss~lihgg~ryl~~~~~~~~~~~~~l~~e~l~er 146 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAATR--GLRVGLVERE-DFSSGTSSRSTKLIHGGVRYLEKAVFQLDYGQLKLVFHALEER 146 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHhC--CCEEEEEecc-ccCCCcccchhhhhhhHHHHHHHHhhCCCccceeehHHHHHHH
Confidence 459999999999999999999999 9999999999 799999999999999886442211 0112333333333
Q ss_pred HHHHHhcCCCCcccCeEEEEeCc-ChhhHH---HHHHHHH-hCCCCcceeeCHHHHHhhcCCccc------ceeEecCCc
Q psy7710 130 YEYFDKRNIPYKKCGKLIVALNE-QLEPLH---DLYERSI-QNNVKDVRLVSAEEIKTIEPYCKG------VKAIHSPNT 198 (473)
Q Consensus 130 ~~~~~~~~~~~~~~g~l~~~~~~-~~~~~~---~~~~~~~-~~g~~~~~~l~~~~~~~~~p~~~~------~~~~~~~~~ 198 (473)
..+.+....-....+.+...... +...+. ..+.... ..+.+..++++++++.+++|.+.. +.+.+.+.+
T Consensus 147 ~~l~~~ap~l~~~l~~~~p~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~~e~~~~~P~L~~~~~~~~l~ga~~~~D 226 (627)
T PLN02464 147 KQLIENAPHLCHALPIMTPCYDWFEVPYYWAGLKAYDLVAGPRLLHLSRYYSAKESLELFPTLAKKGKDGSLKGTVVYYD 226 (627)
T ss_pred HHHHhhChhhccccceeeeccchhhhHHHHHHHHHHHHhcCCcCCCCceEECHHHHHHhCCCCCccccccceeEEEEecC
Confidence 33322221111111222221111 111111 1111111 123334688999999999998863 445556778
Q ss_pred cceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEc--CCeE-EEEc---CCCc--EEEcCEEEEcCCcChHHHHHhcCCC
Q psy7710 199 GIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKEN--PESV-TIST---KQGD--HLESSYALVCAGLQADEMALKSGCS 270 (473)
Q Consensus 199 ~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~--~~~v-~v~~---~~g~--~i~ad~VV~aaG~~s~~l~~~~g~~ 270 (473)
+++||.+++..|.+.++++|++++.+++|+++..+ ++.+ .|+. .++. +++||.||+|+|+|+..+++++|..
T Consensus 227 g~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~g~~ 306 (627)
T PLN02464 227 GQMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMADGK 306 (627)
T ss_pred cEEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhccCc
Confidence 99999999999999999999999999999999875 3433 3332 2232 6899999999999999999998755
Q ss_pred CCCceeeeeeEEEEeCcCcccCcccccccCCCCCCCccEEEEecCCCCeEEECCCccccccccCcccccchhHHHhhhcc
Q psy7710 271 LEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLR 350 (473)
Q Consensus 271 ~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (473)
..+.+.|.||+++.++..........+++... ....+|+.|. +|++++|+|.+...... +.++
T Consensus 307 ~~~~I~p~kG~hlvl~~~~~~~~~~~i~~~~~---dgr~~~~~P~-~g~~liGtTd~~~~~~~-----~~~~-------- 369 (627)
T PLN02464 307 AKPMICPSSGVHIVLPDYYSPEGMGLIVPKTK---DGRVVFMLPW-LGRTVAGTTDSKTPITM-----LPEP-------- 369 (627)
T ss_pred CCCceEeeeeEEEecccccCCCCceEEecCCC---CCCEEEEEec-CCcEEEecCCCCCCCCC-----CCCC--------
Confidence 44569999999998854211111122233211 1336899999 88999998865421111 1111
Q ss_pred CCcchhccchhhhhchHHHHhhhcchhHHHHHhhccc-CCCCCCcccCCCeeceEeeCCCCcc
Q psy7710 351 YPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIE-EIEAGDIQRGPSGVRAQALSSSGDL 412 (473)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~l~~~~i~~~w~G~rp~~~t~d~~p 412 (473)
+.++ ++.+++.++++|| .+...+|++.|+|+||. .+|+.|
T Consensus 370 -----------t~~e---------i~~Ll~~a~~~~~~~l~~~~v~~~waG~RPl--~~d~~~ 410 (627)
T PLN02464 370 -----------HEDE---------IQFILDAISDYLNVKVRRSDVLSAWSGIRPL--AVDPSA 410 (627)
T ss_pred -----------CHHH---------HHHHHHHHHHhhCCCCChhhEEEEEEeEEee--ccCCCC
Confidence 1111 3466799999999 79999999999999998 455443
No 24
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=5.5e-31 Score=265.63 Aligned_cols=308 Identities=16% Similarity=0.190 Sum_probs=210.5
Q ss_pred CCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHH
Q psy7710 55 PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFD 134 (473)
Q Consensus 55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (473)
..++||+|||||++|+++|++|+++ |++|+||||+ .+++++|+++++++|.+..|. ......+..++...+..+.+
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~r--G~~V~LlEk~-d~~~GtS~~ss~lihgg~ryl-~~~~~~l~~e~~~e~~~l~~ 79 (502)
T PRK13369 4 PETYDLFVIGGGINGAGIARDAAGR--GLKVLLCEKD-DLAQGTSSRSGKLVHGGLRYL-EYYEFRLVREALIEREVLLA 79 (502)
T ss_pred CcccCEEEECCCHHHHHHHHHHHhC--CCcEEEEECC-CCCCCCchhhhhhHHHHHHHH-HhccHHHHHHHHHHHHHHHH
Confidence 4669999999999999999999999 9999999999 799999999999999887653 22234556666655555554
Q ss_pred hcCCCCcccCeEEEEeCc-ChhhHH-----HHHHHHH-hCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHH
Q psy7710 135 KRNIPYKKCGKLIVALNE-QLEPLH-----DLYERSI-QNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVT 207 (473)
Q Consensus 135 ~~~~~~~~~g~l~~~~~~-~~~~~~-----~~~~~~~-~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 207 (473)
....-....+ +.+.... +...+. .+++.+. ...++..+.++..+.....|......+.+.+.+++++|.+++
T Consensus 80 ~ap~l~~~~~-~~~~~~~~~~~~~~~~~g~~ly~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~a~~~~dg~vd~~rl~ 158 (502)
T PRK13369 80 AAPHIIWPMR-FVLPHSPEDRPAWLVRLGLFLYDHLGGRKRLPGTRTLDLRRDPEGAPLKPEYTKGFEYSDCWVDDARLV 158 (502)
T ss_pred hCCccccccc-eEEecccccccHHHHHHHHHHHHhccCCCCCCcceEechhhccccCCchHhcCEEEEEcCeeecHHHHH
Confidence 4321122233 3333332 222222 1111111 122334566776665555554333545567788899999999
Q ss_pred HHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCC----cEEEcCEEEEcCCcChHHHHHh-cCCCCCCceeeeeeEE
Q psy7710 208 RVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQG----DHLESSYALVCAGLQADEMALK-SGCSLEPAIVPFRGEY 282 (473)
Q Consensus 208 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g----~~i~ad~VV~aaG~~s~~l~~~-~g~~~~~~~~p~~g~~ 282 (473)
..+...++++|++++.+++|+++..+++.+.|++.++ .+++|+.||+|+|+|+..+.++ .|....+++.|.||++
T Consensus 159 ~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~~~~v~p~kG~~ 238 (502)
T PRK13369 159 VLNALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWVTDVIHRVAGSNSSRNVRLVKGSH 238 (502)
T ss_pred HHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccHHHHHhhccCCCCCcceEEeeEEE
Confidence 9999999999999999999999998887777765443 3589999999999999999874 4765445799999999
Q ss_pred EEeCcCcccCcccccccCCCCCCCccEEEEecCCCCeEEECCCccccc-cccCcccccchhHHHhhhccCCcchhccchh
Q psy7710 283 LLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAF-KKEGYRWRDFSVRELFSTLRYPGFWRLGLKY 361 (473)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (473)
+.++...... ....++.++ ..-+|+.|..++.+++|+|..... ++++. .+
T Consensus 239 lv~~~~~~~~-~~~~~~~~d----gr~~~i~P~~~~~~liGtTd~~~~~~~~~~-----~~------------------- 289 (502)
T PRK13369 239 IVVPKFWDGA-QAYLFQNPD----KRVIFANPYEGDFTLIGTTDIAYEGDPEDV-----AA------------------- 289 (502)
T ss_pred EEeCCccCCC-ceEEEeCCC----CeEEEEEEecCCEEEEEecCccccCCCCCC-----CC-------------------
Confidence 9986432111 111112211 123689999778888999854210 00110 01
Q ss_pred hhhchHHHHhhhcchhHHHHHhhccc-CCCCCCcccCCCeeceEe
Q psy7710 362 TRYGSKEMIMSWFPSMRVNELKQYIE-EIEAGDIQRGPSGVRAQA 405 (473)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~P-~l~~~~i~~~w~G~rp~~ 405 (473)
+.+. ++.+++.+.++|| .|...+|++.|+|+||.+
T Consensus 290 ~~~~---------i~~ll~~~~~~~~~~l~~~~i~~~waGlRPl~ 325 (502)
T PRK13369 290 DEEE---------IDYLLDAANRYFKEKLRREDVVHSFSGVRPLF 325 (502)
T ss_pred CHHH---------HHHHHHHHHHhhCCCCCHhHEEEEeeceEEcC
Confidence 0111 3466799999997 899999999999999984
No 25
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.97 E-value=1.5e-29 Score=254.79 Aligned_cols=317 Identities=16% Similarity=0.160 Sum_probs=207.7
Q ss_pred CCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHH
Q psy7710 55 PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFD 134 (473)
Q Consensus 55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (473)
...+||+|||||++|+++|++|+++ |++|+||||+ .+++++|+++.+++|.+..|... ....+...+......+.+
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~r--Gl~V~LvEk~-d~~~GtS~~ss~lihgG~ryl~~-~~~~l~~e~l~er~~l~~ 79 (508)
T PRK12266 4 METYDLLVIGGGINGAGIARDAAGR--GLSVLLCEQD-DLASATSSASTKLIHGGLRYLEH-YEFRLVREALAEREVLLR 79 (508)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHC--CCeEEEEecC-CCCCCccccccccccchHHHhhh-ccHHHHHHHHHHHHHHHH
Confidence 3569999999999999999999999 9999999998 79999999999999999876433 234566666666555555
Q ss_pred hcCCCCcccCeEEEEeCcChhhH-----HHHHHHHHhCCCCcceeeCHHHHHhhc-----CCccc-ceeEecCCccceeH
Q psy7710 135 KRNIPYKKCGKLIVALNEQLEPL-----HDLYERSIQNNVKDVRLVSAEEIKTIE-----PYCKG-VKAIHSPNTGIVDW 203 (473)
Q Consensus 135 ~~~~~~~~~g~l~~~~~~~~~~~-----~~~~~~~~~~g~~~~~~l~~~~~~~~~-----p~~~~-~~~~~~~~~~~~~~ 203 (473)
....-..+...+........... ..+++.+.. ...+...+..... |.+.. +.+.+.+.++++||
T Consensus 80 ~~p~~~~~l~~~~~~~~~~~~~~~~~~gl~lyd~~~~-----~~~l~~~~~~~~~~~~~~~~L~~~l~g~~~~~dg~vd~ 154 (508)
T PRK12266 80 MAPHIIWPMRFVLPHRPHLRPAWMIRAGLFLYDHLGK-----RKSLPGSRGLDLGRDPAGSPLKPEITRGFEYSDCWVDD 154 (508)
T ss_pred hCCCcccccceEEEecccccchHHHHHHHHHHHhhcC-----CCCCChhhhhchhhcccCCCcchhhcEEEEEcCcccCH
Confidence 43322222222221111111111 111111111 1122222222211 33332 33335577789999
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCC---C--cEEEcCEEEEcCCcChHHHHHh-cCCCCCCceee
Q psy7710 204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQ---G--DHLESSYALVCAGLQADEMALK-SGCSLEPAIVP 277 (473)
Q Consensus 204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~---g--~~i~ad~VV~aaG~~s~~l~~~-~g~~~~~~~~p 277 (473)
.+++..+.+.++++|++++++++|+++..+++.+.|++.+ | .+++|+.||+|+|+|+..++++ +|+....++.|
T Consensus 155 ~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~~~~i~p 234 (508)
T PRK12266 155 ARLVVLNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWVKQFLDDGLGLPSPYGIRL 234 (508)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccHHHHHhhccCCCCCcceee
Confidence 9999999999999999999999999998877777665542 4 3689999999999999999775 47655568999
Q ss_pred eeeEEEEeCcCcccCcccccccCCCCCCCccEEEEecCCCCeEEECCCcccc-ccccCcccccchhHHHhhhccCCcchh
Q psy7710 278 FRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLA-FKKEGYRWRDFSVRELFSTLRYPGFWR 356 (473)
Q Consensus 278 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (473)
.+|+++.++...... ...+++.++ ...+|+.|..+|.+++|+|.+.. .+.++. .++
T Consensus 235 ~kG~~lvl~~~~~~~-~~~~~~~~d----gr~v~~~P~~~g~~liGttd~~~~~~~~~~-----~~~------------- 291 (508)
T PRK12266 235 VKGSHIVVPRLFDHD-QAYILQNPD----GRIVFAIPYEDDFTLIGTTDVEYKGDPAKV-----AIS------------- 291 (508)
T ss_pred eeeEEEEECCcCCCC-cEEEEeCCC----CCEEEEEEeCCCeEEEecCCCCCCCCCCCC-----CCC-------------
Confidence 999999986432211 111222222 22368889878899999885421 111110 000
Q ss_pred ccchhhhhchHHHHhhhcchhHHHHHhhccc-CCCCCCcccCCCeeceEeeCCCCcc-----ccccceee
Q psy7710 357 LGLKYTRYGSKEMIMSWFPSMRVNELKQYIE-EIEAGDIQRGPSGVRAQALSSSGDL-----VDDFGVKA 420 (473)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~l~~~~i~~~w~G~rp~~~t~d~~p-----~~g~~~~~ 420 (473)
.+. ++.+++.+++++| .|...+|++.|+|+||. ++|+.| ..++.|..
T Consensus 292 ------~~~---------i~~Ll~~~~~~~p~~l~~~~ii~~waG~RPl--~~d~~~~~~~~sr~~~i~~ 344 (508)
T PRK12266 292 ------EEE---------IDYLCKVVNRYFKKQLTPADVVWTYSGVRPL--CDDESDSAQAITRDYTLEL 344 (508)
T ss_pred ------HHH---------HHHHHHHHHHhcCCCCCHHHEEEEeeeeEee--CCCCCCCcccCCcceEEEe
Confidence 011 3466799999996 79999999999999998 466544 24555543
No 26
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.96 E-value=9.4e-28 Score=243.41 Aligned_cols=283 Identities=21% Similarity=0.278 Sum_probs=215.7
Q ss_pred HHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCC-CchhHHHHHHHhHHHHHHHHHhcCCCCcccCeEEEEeC
Q psy7710 73 ARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYK-PGTLKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALN 151 (473)
Q Consensus 73 A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~ 151 (473)
|+.|+++ |++|+||||+ .++.++|++|+|++|.+..|. .+....+.+..+.+.+.++... .+.+.|.+.+..+
T Consensus 1 ArdLa~r--Gl~V~llEk~-d~~~GaS~rnsglih~G~ry~~~~~~~a~~~~~~~~~l~~~a~~---~~~~~g~L~va~~ 74 (516)
T TIGR03377 1 MRDLALR--GLRCILLEQG-DLAHGTTGRNHGLLHSGARYAVTDQESARECIEENRILKRIARH---CVEDTGGLFITLP 74 (516)
T ss_pred ChhHHHC--CCCEEEEeCC-CcccccccccccCcCcchhhhccCHHHHHHHHHHHHHHHHhChH---hccCCCceEEecC
Confidence 6789999 9999999998 799999999999999987554 3344455666666666666543 3567788888877
Q ss_pred c-ChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCccc--ceeEecCCccceeHHHHHHHHHHHHHHcCcEEEeCceEE
Q psy7710 152 E-QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKG--VKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVE 228 (473)
Q Consensus 152 ~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~ 228 (473)
+ +...+..++..+...|+ +.++++++++.+.+|.+.. .++++.+ ++.+||.+++..+.+.+.++|++|+++++|+
T Consensus 75 ~~~~~~~~~~~~~~~~~gi-~~~~l~~~e~~~~~P~l~~~~~ga~~~~-dg~vdp~~l~~al~~~A~~~Ga~i~~~t~V~ 152 (516)
T TIGR03377 75 EDDLEFQKQFLAACREAGI-PAEEIDPAEALRLEPNLNPDLIGAVKVP-DGTVDPFRLVAANVLDAQEHGARIFTYTKVT 152 (516)
T ss_pred cccHHHHHHHHHHHHHCCC-CceEECHHHHHHHCCCCChhheEEEEeC-CcEECHHHHHHHHHHHHHHcCCEEEcCcEEE
Confidence 6 77777777777888888 6899999999999998864 5778888 6899999999999999999999999999999
Q ss_pred EEEEcCCeE-EEEc---CCC--cEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEeCcCcccCcccccccCCC
Q psy7710 229 SFKENPESV-TIST---KQG--DHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPD 302 (473)
Q Consensus 229 ~i~~~~~~v-~v~~---~~g--~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~ 302 (473)
+|..+++++ .|++ .+| .+++|+.||+|+|+|+..+++++|++ .++.|.||+++.++..... ..+...+.
T Consensus 153 ~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~g~~--~~i~p~kG~~lv~~~~~~~---~~~~~~~~ 227 (516)
T TIGR03377 153 GLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYAGLD--IRMFPAKGALLIMNHRINN---TVINRCRK 227 (516)
T ss_pred EEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhcCCC--CceecceEEEEEECCcccc---cccccccC
Confidence 999877654 2432 233 37899999999999999999999874 4899999999999754211 11111111
Q ss_pred CCCCccEEEEecCCCCeEEECCCccccccccCcccccchhHHHhhhccCCcchhccchhhhhchHHHHhhhcchhHHHHH
Q psy7710 303 PNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNEL 382 (473)
Q Consensus 303 ~~~~~~~~~~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (473)
+..+.|++|. ++.+++|+|.+...+.+++. + +. +.++.+++.+
T Consensus 228 ---~~~g~~~~P~-~~~~liGtT~~~~~~~~~~~-----~-------------------~~---------~~v~~ll~~~ 270 (516)
T TIGR03377 228 ---PSDADILVPG-DTISIIGTTSERIDDPDDLP-----V-------------------TQ---------EEVDVLLREG 270 (516)
T ss_pred ---CCCCcEEEEC-CCeEEEecCCCCCCCCCCCC-----C-------------------CH---------HHHHHHHHHH
Confidence 1234678896 67889999865321111111 1 00 1134667999
Q ss_pred hhcccCCCCCCcccCCCeeceEe
Q psy7710 383 KQYIEEIEAGDIQRGPSGVRAQA 405 (473)
Q Consensus 383 ~~~~P~l~~~~i~~~w~G~rp~~ 405 (473)
.+++|.|...+|++.|+|+||..
T Consensus 271 ~~~~P~l~~~~i~~~~aGvRPl~ 293 (516)
T TIGR03377 271 AKLAPMLAQTRILRAFAGVRPLV 293 (516)
T ss_pred HHhCcccccCCEEEEEeeccccc
Confidence 99999999999999999999974
No 27
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.96 E-value=3.4e-27 Score=229.43 Aligned_cols=309 Identities=20% Similarity=0.227 Sum_probs=212.7
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHh
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDK 135 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (473)
..+||+|||||+.|+-+|+.++.+ |++|+|+|++ .+++|+|+++.+++|.|..|.... ...+..++...-.-+.+.
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~R--Gl~v~LvE~~-D~AsGTSsrstkLiHGGlRYl~~~-e~~lvrEal~Er~vL~~~ 86 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGR--GLKVALVEKG-DLASGTSSRSTKLIHGGLRYLEQY-EFSLVREALAEREVLLRI 86 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhC--CCeEEEEecC-cccCcccCccccCccchhhhhhhc-chHHHHHHHHHHHHHHHh
Confidence 679999999999999999999999 9999999999 799999999999999998765432 122333333333333333
Q ss_pred cCCCCcccCeEEEEeC--c-Chh--hHHHHHHHHHh--CCCCcceeeCHHHHHhhcCCccc--ceeEecCCccceeHHHH
Q psy7710 136 RNIPYKKCGKLIVALN--E-QLE--PLHDLYERSIQ--NNVKDVRLVSAEEIKTIEPYCKG--VKAIHSPNTGIVDWGLV 206 (473)
Q Consensus 136 ~~~~~~~~g~l~~~~~--~-~~~--~~~~~~~~~~~--~g~~~~~~l~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~~~ 206 (473)
.+--..+...+....+ . ... .-...+..+.. ...+..+.++..+...+.|.++. ..+.+...++++|+.++
T Consensus 87 APH~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRL 166 (532)
T COG0578 87 APHLVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARL 166 (532)
T ss_pred CccccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHH
Confidence 3322334444444433 2 111 11112222211 11235677788888888998865 55455566779999999
Q ss_pred HHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCC---C--cEEEcCEEEEcCCcChHHHHHhcCCCCC--Cceeeee
Q psy7710 207 TRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQ---G--DHLESSYALVCAGLQADEMALKSGCSLE--PAIVPFR 279 (473)
Q Consensus 207 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~---g--~~i~ad~VV~aaG~~s~~l~~~~g~~~~--~~~~p~~ 279 (473)
+-.....+.++|.++++.++|+++..+++.+.|+..+ | .+++|+.||||||+|+.++++..+.... ..+.|.|
T Consensus 167 v~~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~~~~~~~~~~vr~sk 246 (532)
T COG0578 167 VAANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMAGLEQSPHIGVRPSK 246 (532)
T ss_pred HHHHHHHHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhhcccCCCCccceecc
Confidence 9999999999999999999999999998855565433 2 3689999999999999999999876543 2589999
Q ss_pred eEEEEeCcCcccCcccccccCCCCCCCccEEEEecCCCCeEEECCCccccccccCcccccchhHHHhhhccCCcchhccc
Q psy7710 280 GEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGL 359 (473)
Q Consensus 280 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (473)
|.+++++. ........+++++.+ ..-+++.|.. +..++|.|...... .+.++.
T Consensus 247 GsHlVv~~-~~~~~~a~~~~~~~d---~r~~f~iP~~-~~~liGTTD~~~~~------~~~~~~---------------- 299 (532)
T COG0578 247 GSHLVVDK-KFPINQAVINRCRKD---GRIVFAIPYE-GKTLIGTTDTDYDG------DPEDPR---------------- 299 (532)
T ss_pred ceEEEecc-cCCCCceEEeecCCC---CceEEEecCC-CCEEeeccccccCC------CcccCC----------------
Confidence 99999987 111122233344321 2346888984 55689999654311 111110
Q ss_pred hhhhhchHHHHhhhcchhHHHHHh-hcccCCCCCCcccCCCeeceEe
Q psy7710 360 KYTRYGSKEMIMSWFPSMRVNELK-QYIEEIEAGDIQRGPSGVRAQA 405 (473)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~l~~~~i~~~w~G~rp~~ 405 (473)
-+.++ ++.+++.+. .+-|.+...+|++.|+|+||..
T Consensus 300 -~~~eE---------idyll~~~~~~~~~~l~~~dI~~syaGVRPL~ 336 (532)
T COG0578 300 -ITEEE---------IDYLLDAVNRYLAPPLTREDILSTYAGVRPLV 336 (532)
T ss_pred -CCHHH---------HHHHHHHHHhhhhccCChhheeeeeeeeeecc
Confidence 01111 346667888 5667899999999999999984
No 28
>KOG2820|consensus
Probab=99.95 E-value=1.1e-25 Score=200.99 Aligned_cols=346 Identities=16% Similarity=0.183 Sum_probs=225.0
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCC-CcceEEeeccCCCchhHHHHHHHhHHHHHHHHH
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGH-NSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFD 134 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (473)
+..||+|||||+-|+++||+|+++ |.+++++|+.+.+-...|++ ..-++++. -++..+..+..++.+.|+++..
T Consensus 6 ~~~~viiVGAGVfG~stAyeLaK~--g~killLeqf~~ph~~GSShg~sRIiR~~---Y~e~~Y~~m~~ea~e~W~~~~~ 80 (399)
T KOG2820|consen 6 KSRDVIIVGAGVFGLSTAYELAKR--GDKILLLEQFPLPHSRGSSHGISRIIRPA---YAEDKYMSMVLEAYEKWRNLPE 80 (399)
T ss_pred cceeEEEEcccccchHHHHHHHhc--CCeEEEEeccCCCcccCcccCcceeechh---hhhHHHHHHHHHHHHHHHhChh
Confidence 578999999999999999999999 89999999986554443333 33333332 2344566788888888888777
Q ss_pred hcCCCCcccCeEEEEeCc-ChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCC-cc---cceeEecCCccceeHHHHHHH
Q psy7710 135 KRNIPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPY-CK---GVKAIHSPNTGIVDWGLVTRV 209 (473)
Q Consensus 135 ~~~~~~~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~-~~---~~~~~~~~~~~~~~~~~~~~~ 209 (473)
+.+..+. .+...+.... +...+......++..++ ..+.++.+++++.+|. .. ...|+..+.+|++++.+-++.
T Consensus 81 ~~g~~~~-~~t~~~~~~~~e~~~~~sv~~~~k~~~l-~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~ 158 (399)
T KOG2820|consen 81 ESGVKLH-CGTGLLISGDPERQRLDSVAANLKRKGL-AHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKA 158 (399)
T ss_pred hhceeec-ccceeeecCcHHHHHHHHHHHHHhhhhh-hhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHH
Confidence 6665443 3344444444 55667777777777777 6788899999999993 32 367889999999999999999
Q ss_pred HHHHHHHcCcEEEeCceEEEEEE---cCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHh-cCCCCCCceeeeeeEEEEe
Q psy7710 210 MGEEFCELGGEIRLNQQVESFKE---NPESVTISTKQGDHLESSYALVCAGLQADEMALK-SGCSLEPAIVPFRGEYLLL 285 (473)
Q Consensus 210 l~~~~~~~Gv~i~~~~~V~~i~~---~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~-~g~~~~~~~~p~~g~~~~~ 285 (473)
++..+++.|+.++.+..|..+.. ++..+.|+|.+|..+.|+.+|+++|+|...|++. +++. .|+.|++-..+..
T Consensus 159 ~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL~~~~~~~--~Pv~~i~ltvcyw 236 (399)
T KOG2820|consen 159 LQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLLPTSLAIG--FPVAPIQLTVCYW 236 (399)
T ss_pred HHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhhcCcccccC--CccceeEeehhhh
Confidence 99999999999999999988874 3457889999997799999999999998888875 4443 4676764333322
Q ss_pred CcCcccCcccccccCCCCCCCccEEEEecC-CCCeEE-ECCCc-ccc----cc-ccCcccccchhHHHhhhccCCcchhc
Q psy7710 286 NPAKQHLVRGNIYPVPDPNFPFLGVHFTPR-MDGSVW-LGPNA-VLA----FK-KEGYRWRDFSVRELFSTLRYPGFWRL 357 (473)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~-iG~~~-~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (473)
..... ..++ ... ...+|+.|. ++..++ .|... ++. .+ .++.+..+.+++ .++
T Consensus 237 k~~~~----~~~~-l~~----d~~f~~F~~~~~~~~~~ya~p~~eYpg~~k~~yh~g~~v~~~~~~------~p~----- 296 (399)
T KOG2820|consen 237 KTKKN----MPVY-LFD----DDCFYAFPPYPDTKLIKYALPGYEYPGLMKVDYHEGSKVVPIDPD------GPP----- 296 (399)
T ss_pred eeecC----Ccee-ecC----CCCceeccCCCCcceEEeccCCCCCcceEEEeecCCCcCCCCCCC------CCc-----
Confidence 21111 1110 000 012333332 333222 22211 110 00 000000111110 000
Q ss_pred cchhhhhchHHHHhhhcchhHHHHHhhcccCCCCCCcccCCCeeceEeeCCCCccc-------cccceeeeecCCccccc
Q psy7710 358 GLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLV-------DDFGVKAIHSPHTGIVD 430 (473)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~t~d~~p~-------~g~~~~~g~~~~~gi~~ 430 (473)
. .....+ ++....-.+++.|.+++........+++ |.|||...+ ++++++.|++||+ .
T Consensus 297 --~--~s~~~~------idl~~~f~~~~~p~l~~~~p~~t~~C~Y--T~TpD~~FviD~~P~~~Nv~Vg~G~SGHG-F-- 361 (399)
T KOG2820|consen 297 --K--RSLPKA------IDLMRRFLRTFGPDLDDRSPINTKMCMY--TDTPDANFVIDKHPQYDNVFVGGGGSGHG-F-- 361 (399)
T ss_pred --c--cCcchH------HHHHHHHHHHhCccccCCCcceeeEEEe--eCCCCcCeeeecCCCcccEEEecCCCCcc-e--
Confidence 0 000100 1122355677889999888888888888 558986654 5778999999985 3
Q ss_pred hHHHHHHHHHHHHhhCC
Q psy7710 431 WGLVTRVMGEEFCELGG 447 (473)
Q Consensus 431 ~~~~a~~~g~~~~~~~~ 447 (473)
++||.+|+.++++..
T Consensus 362 --K~aP~iGk~lae~~~ 376 (399)
T KOG2820|consen 362 --KFAPNIGKYLAEMAM 376 (399)
T ss_pred --eecchHHHHHHHHhh
Confidence 678888888877733
No 29
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=99.94 E-value=4.2e-24 Score=201.12 Aligned_cols=349 Identities=23% Similarity=0.318 Sum_probs=254.1
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccC--CCcceEEeec---cCCCchh-------HHHHHH
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG--HNSGVVHAGI---YYKPGTL-------KAKLCV 123 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~--~~~g~~~~~~---~~~~~~~-------~~~~~~ 123 (473)
.++||++|||||+|.++++.|++..|..+|.|+||.+.++..+|. .|+|..|.+. .|.|+.. ++.-..
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A~ESS~~wNNAGTGHaa~cElNYTpe~~dGsidi~KA~~In 81 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVALESSNAWNNAGTGHAALCELNYTPEKADGSIDISKAVKIN 81 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcchhhcCCCccccccchhhhhhccCCCCcCCCcccHHHHHHHH
Confidence 568999999999999999999999999999999999888877664 7888888764 5555422 222223
Q ss_pred HhH----HHHHHHHHhcCCC-----CcccCeEEEEeCc-ChhhHHHHHHHHHhC-CCCcceee-CHHHHHhhcCCcc---
Q psy7710 124 EGM----NLAYEYFDKRNIP-----YKKCGKLIVALNE-QLEPLHDLYERSIQN-NVKDVRLV-SAEEIKTIEPYCK--- 188 (473)
Q Consensus 124 ~~~----~~~~~~~~~~~~~-----~~~~g~l~~~~~~-~~~~~~~~~~~~~~~-g~~~~~~l-~~~~~~~~~p~~~--- 188 (473)
+.+ +.|..+.++--+. .+...++.+...+ +.+.+++.++.++++ -+..+++. +.+++.++.|...
T Consensus 82 eqFevsrqfWs~lv~~g~l~~p~~FI~~~PHmsfv~Ge~~v~fLkkR~~~l~~~~lF~~Me~sed~~~i~~w~PLvm~gR 161 (488)
T PF06039_consen 82 EQFEVSRQFWSYLVENGILQNPESFINPVPHMSFVWGEENVDFLKKRYEALKEHPLFPGMEFSEDPEQIAEWAPLVMEGR 161 (488)
T ss_pred HHHHHHHHHHHHHHHCCCCCChHHhccCCCceEEEEChHhHHHHHHHHHHHhcCCCCCCcEEccCHHHHHhhCCeecCCC
Confidence 333 3344444332221 3567888888888 899999999998874 34467776 5788899988753
Q ss_pred ----cceeEecCCccceeHHHHHHHHHHHHHHc-CcEEEeCceEEEEEEcCCe-EEEEcC-----CCcEEEcCEEEEcCC
Q psy7710 189 ----GVKAIHSPNTGIVDWGLVTRVMGEEFCEL-GGEIRLNQQVESFKENPES-VTISTK-----QGDHLESSYALVCAG 257 (473)
Q Consensus 189 ----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~-v~v~~~-----~g~~i~ad~VV~aaG 257 (473)
.+.+.+.+.+..+|...+++.|.+.+++. |++++++++|++|.+.+++ |.|++. +..+++|+.|++++|
T Consensus 162 ~~~e~vAat~~~~GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAG 241 (488)
T PF06039_consen 162 DPSEPVAATRVEEGTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAG 241 (488)
T ss_pred CCCCceeeeecCCCccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCc
Confidence 26678888888899999999999999987 9999999999999988765 877642 225899999999999
Q ss_pred cChHHHHHhcCCCC--CCceeeeeeEEEEeCcCcc-cCcccccccCCCCCCCccEE-EEecC-CCC--eEEECCCccccc
Q psy7710 258 LQADEMALKSGCSL--EPAIVPFRGEYLLLNPAKQ-HLVRGNIYPVPDPNFPFLGV-HFTPR-MDG--SVWLGPNAVLAF 330 (473)
Q Consensus 258 ~~s~~l~~~~g~~~--~~~~~p~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~p~-~~g--~~~iG~~~~~~~ 330 (473)
++|..|++.+||+. .....|+.||.+.+..+.. ......+|....+..|...+ |+-+| -+| .+++|+++.+.+
T Consensus 242 G~aL~LLqksgi~e~~gyggfPVsG~fl~~~n~~vv~~H~aKVYgka~vGaPPmSvPHlDtRiidGk~~llFGP~Agfs~ 321 (488)
T PF06039_consen 242 GGALPLLQKSGIPEGKGYGGFPVSGQFLRCKNPEVVAQHNAKVYGKASVGAPPMSVPHLDTRIIDGKKSLLFGPFAGFSP 321 (488)
T ss_pred hHhHHHHHHcCChhhcccCCCcccceEEecCCHHHHHHhcceeeeeCCCCCCCccCccCCchhcCCCcceeecCccccch
Confidence 99999999999853 4567899999999986532 12244566554443222222 55555 233 478999998775
Q ss_pred cccCcccccchhHHHhhhccCCcchhcc---chh---hhhchHHHHhhhcchhHHHHHhhcccCCCCCCcccCCCeeceE
Q psy7710 331 KKEGYRWRDFSVRELFSTLRYPGFWRLG---LKY---TRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQ 404 (473)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~ 404 (473)
+..- ..+.-|++.++...++..|+ ++| +++-+.+++. ..+..++.+++++|.++..++.-..+|.|++
T Consensus 322 KfLK----~GS~~Dl~~S~~~~N~~~ml~~~~~n~~L~kYLi~q~~~--s~~~r~~~Lr~f~P~a~~~DW~l~~AGqRvQ 395 (488)
T PF06039_consen 322 KFLK----NGSYLDLFKSLRPDNLFPMLAVGLDNFDLTKYLIGQVLQ--SKEDRMEALRKFYPSAKPEDWELITAGQRVQ 395 (488)
T ss_pred HHhc----CCcHHHHHhhcCcccHHHHHHHHhhhhhHHHHHHHhhcc--CHHHHHHHHHHhCccCChhceEEEecCceee
Confidence 4321 12455677777777776665 233 2333333331 1245679999999999999998889999999
Q ss_pred eeCCCC
Q psy7710 405 ALSSSG 410 (473)
Q Consensus 405 ~~t~d~ 410 (473)
...+|.
T Consensus 396 iIkk~~ 401 (488)
T PF06039_consen 396 IIKKDE 401 (488)
T ss_pred EEecCC
Confidence 888774
No 30
>KOG3923|consensus
Probab=99.89 E-value=1.6e-21 Score=171.36 Aligned_cols=277 Identities=18% Similarity=0.198 Sum_probs=181.5
Q ss_pred CcccEEEEcCChHHHHHHHHHHh-----cCCCCeEEEEeccCcccCcccCCCcceEEeeccCC-CchhHHHHHHHhHHHH
Q psy7710 56 ALYDVVVVGGGIVGVATARELKL-----NYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYK-PGTLKAKLCVEGMNLA 129 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~-----~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~ 129 (473)
+..+|+|||+|++||++|+.+.+ .-|-.+|+|++-. ..-.-+|...+|++.+..... +.....++....++.+
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Dr-f~e~T~s~~~AGl~~p~~~~~~~~~~~~~w~k~tf~~l 80 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDR-FTEDTTSDVAAGLFRPDLSDGTPQEINRQWGKDTFNYL 80 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCC-CccccccccccceeecccCCCCcHHHHHHHHHHHHHHH
Confidence 35789999999999999988877 3345799999876 445566777888887764332 3334567888888888
Q ss_pred HHHHHhc--CC-CC-cccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHH
Q psy7710 130 YEYFDKR--NI-PY-KKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGL 205 (473)
Q Consensus 130 ~~~~~~~--~~-~~-~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 205 (473)
..+.... +. .. .-.|...... + .+.+........-. .++.++..++. .+|.....+-.+ .....++..
T Consensus 81 ~~l~rs~~a~~aGV~l~sg~~ls~~-e---~~~~~~~~w~diV~-~fr~l~e~EL~-~f~~~~~~G~~~--Tt~~sE~~~ 152 (342)
T KOG3923|consen 81 AHLARSEEAGEAGVCLVSGHILSDS-E---SLDDQQRSWGDIVY-GFRDLTERELL-GFPDYSTYGIHF--TTYLSEGPK 152 (342)
T ss_pred HHHhccccccccceEEeeeeeeccC-C---CchhhhhhHHhhhh-hhhcCCHHHhc-CCCCccccceeE--EEeeccchh
Confidence 8877622 11 11 1223332221 2 11111111111112 56777887776 555442222211 122456788
Q ss_pred HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEe
Q psy7710 206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLL 285 (473)
Q Consensus 206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~ 285 (473)
|+..|.+.+.++|+++. ..+|+++.+-. .-.+|.||+|+|.|+..|+. |..++|+|||++.+
T Consensus 153 ylpyl~k~l~e~Gvef~-~r~v~~l~E~~-----------~~~~DVivNCtGL~a~~L~g------Dd~~yPiRGqVl~V 214 (342)
T KOG3923|consen 153 YLPYLKKRLTENGVEFV-QRRVESLEEVA-----------RPEYDVIVNCTGLGAGKLAG------DDDLYPIRGQVLKV 214 (342)
T ss_pred hhHHHHHHHHhcCcEEE-EeeeccHHHhc-----------cCCCcEEEECCccccccccC------CcceeeccceEEEe
Confidence 99999999999999985 56777665421 13479999999999987764 34599999999999
Q ss_pred CcCcccCcccccccCCCCCCCccEEEEecCCCCeEEECCCccccccccCcccccchhHHHhhhccCCcchhccchhhhhc
Q psy7710 286 NPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYG 365 (473)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (473)
+.+- +++.+|. + +...|++|- .+.+.+|++.+.. +|+.. .... .
T Consensus 215 ~ApW---vkhf~~~--D----~~~ty~iP~-~~~V~lGg~~Q~g----~w~~e-i~~~---------------------D 258 (342)
T KOG3923|consen 215 DAPW---VKHFIYR--D----FSRTYIIPG-TESVTLGGTKQEG----NWNLE-ITDE---------------------D 258 (342)
T ss_pred eCCc---eeEEEEe--c----CCccEEecC-CceEEEccccccC----cccCc-CChh---------------------h
Confidence 8763 3444443 1 122588886 5678999998753 23221 1111 1
Q ss_pred hHHHHhhhcchhHHHHHhhcccCCCCCCcccCCCeeceE
Q psy7710 366 SKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQ 404 (473)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~ 404 (473)
..++++++.++.|.|+.+++++.|+|+||.
T Consensus 259 ---------~~dIl~rc~aL~P~l~~a~ii~E~vGlRP~ 288 (342)
T KOG3923|consen 259 ---------RRDILERCCALEPSLRHAEIIREWVGLRPG 288 (342)
T ss_pred ---------HHHHHHHHHHhCcccccceehhhhhcccCC
Confidence 346779999999999999999999999996
No 31
>KOG0042|consensus
Probab=99.88 E-value=1.8e-22 Score=190.50 Aligned_cols=303 Identities=19% Similarity=0.252 Sum_probs=200.8
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHH----
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYE---- 131 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 131 (473)
.++||+|||||.+|.-+|+..+.+ |+||.++|++ .+++|+|+.+.-++|.|..|....+ .++.+..+++.++
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~TR--GLktaLVE~~-DF~SGTSSkSTKLiHGGVRYLekAi-~~lD~~qyrlV~eaL~E 141 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAATR--GLKTALVEAG-DFASGTSSKSTKLIHGGVRYLEKAI-SNLDYEQYRLVKEALNE 141 (680)
T ss_pred CcccEEEECCCccCcceeehhhcc--cceeEEEecc-cccCCccccchhhhcccHHHHHHHH-HhcCHHHHHHHHHHHHH
Confidence 469999999999999999999999 9999999999 7999999999999999976644322 2222333333222
Q ss_pred ---HHHhc-------CC--C---CcccCeEEEEeCcChhhHHHHHHHHH-hCCCCcceeeCHHHHHhhcCCccc--ceeE
Q psy7710 132 ---YFDKR-------NI--P---YKKCGKLIVALNEQLEPLHDLYERSI-QNNVKDVRLVSAEEIKTIEPYCKG--VKAI 193 (473)
Q Consensus 132 ---~~~~~-------~~--~---~~~~g~l~~~~~~~~~~~~~~~~~~~-~~g~~~~~~l~~~~~~~~~p~~~~--~~~~ 193 (473)
+.+.. .+ + |.+..+++..-.- +.... ...+....++++++..+.+|.+.. ..|.
T Consensus 142 R~~lle~APhLs~~lPImlPvy~wwQvpYyw~G~K~--------YD~vAG~k~Lk~S~~lSk~~alE~fPmL~~~~L~Ga 213 (680)
T KOG0042|consen 142 RANLLEIAPHLSQPLPIMLPVYKWWQVPYYWVGLKI--------YDLVAGSKNLKSSYFLSKKEALEIFPMLRKDNLKGA 213 (680)
T ss_pred HHHHhhcCccccCCcceeeehhhhhhhhheeeccee--------eeeeccccccccceeecHHHHHHhCccccccCceeE
Confidence 22211 10 0 1111122111100 00110 111224678899999999999875 5565
Q ss_pred ecCCccceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCe-E-EEE-----cCCCcEEEcCEEEEcCCcChHHHHHh
Q psy7710 194 HSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPES-V-TIS-----TKQGDHLESSYALVCAGLQADEMALK 266 (473)
Q Consensus 194 ~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~-v-~v~-----~~~g~~i~ad~VV~aaG~~s~~l~~~ 266 (473)
....+|+.|-.++.-.++-.+.++|+.+....+|.++..++++ + .++ |...-.++|+.||+|||.+++.+.++
T Consensus 214 ~VYyDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr~M 293 (680)
T KOG0042|consen 214 MVYYDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDSIRKM 293 (680)
T ss_pred EEEecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHHhh
Confidence 6666788888889988988899999999999999999877643 2 222 33334688999999999999999998
Q ss_pred cCCCCCCceeeeeeEEEEeCcCcccCcccccccCCCCCCC-ccEEEEecCCCCeEEECCCccccccccCcccccchhHHH
Q psy7710 267 SGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFP-FLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVREL 345 (473)
Q Consensus 267 ~g~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~ 345 (473)
-.-...+-+.|..|.+++++..-...-. .+.++..+ ..-+++.|. .|..+.|.|..+.. ... +|.
T Consensus 294 dd~~~~~i~~pSsGvHIVlP~yY~P~~m----GlldP~TsDgRViFflPW-qg~TIaGTTD~pt~----v~~---~P~-- 359 (680)
T KOG0042|consen 294 DDEDAKPICVPSSGVHIVLPGYYCPENM----GLLDPKTSDGRVIFFLPW-QGKTIAGTTDIPTS----VTH---SPT-- 359 (680)
T ss_pred cccccCceeccCCceeEEcccccCCccc----ccccCCCCCCcEEEEecc-CCceeeccCCCCCC----CCC---CCC--
Confidence 7655445578999999998643211001 11222221 123577787 68888999865321 110 110
Q ss_pred hhhccCCcchhccchhhhhchHHHHhhhcchhHHHHHhhccc---CCCCCCcccCCCeeceEeeCC
Q psy7710 346 FSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIE---EIEAGDIQRGPSGVRAQALSS 408 (473)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P---~l~~~~i~~~w~G~rp~~~t~ 408 (473)
.+..+ ++.+++.++.++- .++..+|.+.|+|+||...+|
T Consensus 360 ---------------PtE~d---------IqfIL~ev~~yl~~~~~VrR~DVlsaWsGiRPLv~DP 401 (680)
T KOG0042|consen 360 ---------------PTEDD---------IQFILKEVQHYLSFDVEVRREDVLSAWSGIRPLVRDP 401 (680)
T ss_pred ---------------CCHHH---------HHHHHHHHHHhhCCCcccchhhhHHHhhCCcccccCC
Confidence 01112 3456688888873 478889999999999997777
No 32
>KOG2852|consensus
Probab=99.88 E-value=6.6e-21 Score=166.54 Aligned_cols=325 Identities=17% Similarity=0.146 Sum_probs=199.1
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCC------CeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHH
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPK------MKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLA 129 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G------~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (473)
...+|+|||||++|.++||+|++. + ..|+|+|+. .+++++|+.++|++..-. .+ +....+...++++.
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~--~sf~~~~~~ItifEs~-~IA~gaSGkasgfLa~wc--~~-s~~~~La~lsfkLh 82 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEH--PSFKKGELDITIFESK-EIAGGASGKASGFLAKWC--QP-SIIQPLATLSFKLH 82 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcC--CccCCCceeEEEEeec-ccccccccccchhhHhhh--CC-cccchhhHHHHHHH
Confidence 457899999999999999999988 4 789999998 899999999999886211 22 22345677788888
Q ss_pred HHHHHhcC----CCCcccCeEEEEeC-c--ChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCcccee
Q psy7710 130 YEYFDKRN----IPYKKCGKLIVALN-E--QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVD 202 (473)
Q Consensus 130 ~~~~~~~~----~~~~~~g~l~~~~~-~--~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~ 202 (473)
+++.++++ .+|+.-..+.+..+ + +.... .. ..+|+.++....... ++ -....++++
T Consensus 83 ~~LsdeydGvnnwgYRaltTws~ka~~en~~p~k~----------pe-gldWi~~e~v~~~ss----iG--~t~ttaqvh 145 (380)
T KOG2852|consen 83 EELSDEYDGVNNWGYRALTTWSCKADWENTNPAKV----------PE-GLDWIQRERVQKCSS----IG--STNTTAQVH 145 (380)
T ss_pred HHHHHhhcCcccccceeeeEEEEEeecccCCcccC----------Cc-chhhhhhHHhhhhee----cc--CCCccceeC
Confidence 88888875 23444444433322 1 11100 11 234444433322211 01 123456899
Q ss_pred HHHHHHHHHHHHHHcC-cEEEeCceEEEEEEcCCeEE-EEc---CC-CcEEEcCEEEEcCCcChHHHHHhcCCCCCCcee
Q psy7710 203 WGLVTRVMGEEFCELG-GEIRLNQQVESFKENPESVT-IST---KQ-GDHLESSYALVCAGLQADEMALKSGCSLEPAIV 276 (473)
Q Consensus 203 ~~~~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~v~-v~~---~~-g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~ 276 (473)
|+.|++.+.+.+++.| |+++++ +|.++..+..++. +-. .+ .....++.+|+++|.|+..|+... ++.
T Consensus 146 P~lFc~~i~sea~k~~~V~lv~G-kv~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTskllp~~------rIs 218 (380)
T KOG2852|consen 146 PYLFCHFILSEAEKRGGVKLVFG-KVKEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWTSKLLPFT------RIS 218 (380)
T ss_pred HHHHHHHHHHHHHhhcCeEEEEe-eeEEeecccccccccchhhhcCceEEeeeeEEEEecCCCchhhcccc------ccc
Confidence 9999999999998876 888876 4667753333322 211 11 234567889999999998888643 556
Q ss_pred eeeeEEEEeCcCcccCccccccc---CCCC-CCCccEEEEecCCCC-eEEECCCccccccccCcccccchhHHHhhhccC
Q psy7710 277 PFRGEYLLLNPAKQHLVRGNIYP---VPDP-NFPFLGVHFTPRMDG-SVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRY 351 (473)
Q Consensus 277 p~~g~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~p~~~g-~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (473)
..|-..+.+++.....-.+.++. ..+. .....-+|.++ ++ .++.|.+..+..-+++.+.-..++
T Consensus 219 glrihsI~l~~~e~~v~~~avf~~l~~~~g~ei~~pe~y~rk--d~Evyicg~~~~e~~lPedsd~v~~np--------- 287 (380)
T KOG2852|consen 219 GLRIHSITLSPGEKPVGPSAVFCELNTMDGLEICKPEEYARK--DREVYICGETDKEHLLPEDSDDVFVNP--------- 287 (380)
T ss_pred eeeeeeEEecCCCCCCCCceEEEEEEeCCCccccCcceeecC--CceEEEecCCCccccCCcccccceeCH---------
Confidence 67777888877654322222221 1111 11112457665 44 455676644321122111000111
Q ss_pred CcchhccchhhhhchHHHHhhhcchhHHHHHhhcccCCCCCCcccCCCeeceEeeCCC-Cccc-----cccceeeeecCC
Q psy7710 352 PGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSS-GDLV-----DDFGVKAIHSPH 425 (473)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~t~d-~~p~-----~g~~~~~g~~~~ 425 (473)
+.. ..+.+-+..+.+.+....+...-+.+-|. +.+ |.|+ -|+|+++||+..
T Consensus 288 ------------eki---------~~Lk~~a~~v~s~l~ks~v~~~qacfLP~--sn~tg~PvIget~sg~yVaagHscW 344 (380)
T KOG2852|consen 288 ------------EKI---------IELKEMADLVSSELTKSNVLDAQACFLPT--SNITGIPVIGETKSGVYVAAGHSCW 344 (380)
T ss_pred ------------HHH---------HHHHHHHHHhhhhhccchhhhhhhccccc--cCCCCCceEeecCCceEEeeccccc
Confidence 112 22234455555677888899999999987 455 8887 388999999887
Q ss_pred ccccchHHHHHHHHHHHHhh
Q psy7710 426 TGIVDWGLVTRVMGEEFCEL 445 (473)
Q Consensus 426 ~gi~~~~~~a~~~g~~~~~~ 445 (473)
||.++|.++..|+++|.++
T Consensus 345 -GItnaPaTG~~mAEllldg 363 (380)
T KOG2852|consen 345 -GITNAPATGKCMAELLLDG 363 (380)
T ss_pred -ceecCcchhHHHHHHHhcc
Confidence 5777777777777776655
No 33
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.69 E-value=8.4e-16 Score=142.57 Aligned_cols=166 Identities=18% Similarity=0.258 Sum_probs=107.5
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCc--------ccCCCcceEEeeccCCC---chhHHHHHHH
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMH--------QTGHNSGVVHAGIYYKP---GTLKAKLCVE 124 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~--------~s~~~~g~~~~~~~~~~---~~~~~~~~~~ 124 (473)
+.+||+|||||++|+.||..++++ |.+|+|||+.+.+|-- +...|......-....| ..++..+...
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~--G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~f 79 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKA--GRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARF 79 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhc--CCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhC
Confidence 468999999999999999999999 9999999999877622 11111111000000011 1111112222
Q ss_pred hHHHHHHHHHhcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHH
Q psy7710 125 GMNLAYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWG 204 (473)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 204 (473)
..+. ++.+...+|+ ....-+ .+-+| |. .-...
T Consensus 80 t~~d-------------------------------~i~~~e~~Gi-~~~e~~-------------~Gr~F-p~--sdkA~ 111 (408)
T COG2081 80 TPED-------------------------------FIDWVEGLGI-ALKEED-------------LGRMF-PD--SDKAS 111 (408)
T ss_pred CHHH-------------------------------HHHHHHhcCC-eeEEcc-------------Cceec-CC--ccchH
Confidence 2222 2333333443 111100 00111 11 01135
Q ss_pred HHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh----------HHHHHhcCCCC
Q psy7710 205 LVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA----------DEMALKSGCSL 271 (473)
Q Consensus 205 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s----------~~l~~~~g~~~ 271 (473)
.+++.|.+++++.||+|+++++|.++..++....+.+++|.+++||.+|+|+|+.| -.++++.|+++
T Consensus 112 ~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtGG~S~P~lGstg~gy~iA~~~G~~I 188 (408)
T COG2081 112 PIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATGGKSWPKLGSTGFGYPIARQFGHTI 188 (408)
T ss_pred HHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecCCcCCCCCCCCchhhHHHHHcCCcc
Confidence 68899999999999999999999999999988999999998899999999999653 26888888764
No 34
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.61 E-value=1.1e-14 Score=141.34 Aligned_cols=163 Identities=23% Similarity=0.316 Sum_probs=88.3
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCc--ccCCCcceEEee-----------ccCCCchhHHHHHHH
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMH--QTGHNSGVVHAG-----------IYYKPGTLKAKLCVE 124 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~--~s~~~~g~~~~~-----------~~~~~~~~~~~~~~~ 124 (473)
|||+|||||++|+.||+.|++. |.+|+|+||++.+|.. .|+ ++.+-... +...+..+...+...
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~--g~~V~vlE~~~~~gkKil~tG-~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f 77 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEK--GARVLVLERNKRVGKKILITG-NGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRF 77 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHT--T--EEEE-SSSSS-HHHHHCG-GGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS
T ss_pred CcEEEECCCHHHHHHHHHHHhC--CCCEEEEeCCcccccceeecC-CCCccccccccchhhHhhhcccchHHHHHHHhcC
Confidence 6999999999999999999999 9999999999777522 111 11111111 000112222223322
Q ss_pred hHHHHHHHHHhcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHH
Q psy7710 125 GMNLAYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWG 204 (473)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 204 (473)
..+... +.+.+.|+ ....-. .+-.+|.. -...
T Consensus 78 ~~~d~~-------------------------------~ff~~~Gv-~~~~~~--------------~gr~fP~s--~~a~ 109 (409)
T PF03486_consen 78 SPEDLI-------------------------------AFFEELGV-PTKIEE--------------DGRVFPKS--DKAS 109 (409)
T ss_dssp -HHHHH-------------------------------HHHHHTT---EEE-S--------------TTEEEETT----HH
T ss_pred CHHHHH-------------------------------HHHHhcCC-eEEEcC--------------CCEECCCC--CcHH
Confidence 323333 33334444 111100 00111111 1346
Q ss_pred HHHHHHHHHHHHcCcEEEeCceEEEEEEcCCe-EEEEcCCCcEEEcCEEEEcCCcCh----------HHHHHhcCCCC
Q psy7710 205 LVTRVMGEEFCELGGEIRLNQQVESFKENPES-VTISTKQGDHLESSYALVCAGLQA----------DEMALKSGCSL 271 (473)
Q Consensus 205 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~-v~v~~~~g~~i~ad~VV~aaG~~s----------~~l~~~~g~~~ 271 (473)
.+.+.|.+.+++.|++|+++++|.+|..++++ +.|+++++..+.||.||+|+|+.| -.+++.+|+.+
T Consensus 110 ~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~S~p~~GS~G~gy~~a~~lGh~i 187 (409)
T PF03486_consen 110 SVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGKSYPKTGSDGSGYRIAKKLGHTI 187 (409)
T ss_dssp HHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----SSSGGGT-SSHHHHHHHHTT--E
T ss_pred HHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCCCccccCCCcHHHHHHHHCCCcE
Confidence 68889999999999999999999999987766 889995556999999999999754 46889998764
No 35
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.59 E-value=5.1e-13 Score=126.43 Aligned_cols=162 Identities=14% Similarity=0.071 Sum_probs=97.7
Q ss_pred ceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcC-CCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeee
Q psy7710 200 IVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTK-QGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPF 278 (473)
Q Consensus 200 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~-~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~ 278 (473)
.++...+.+.|.+.+++.|++++++++|+++..+++++.+... ++.++++|.||.|+|.++ .+.+.+|+... +....
T Consensus 87 ~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s-~~~~~~~~~~~-~~~~~ 164 (295)
T TIGR02032 87 VIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS-IVAKKLGLRKE-PRELG 164 (295)
T ss_pred EEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch-HHHHhcCCCCC-Cccee
Confidence 4667788899999999999999999999999888777665433 334899999999999997 47777776532 11222
Q ss_pred eeEEEEeCcCccc-Ccc-cccccCCCCCCCccEEEEecCCCCeEEECCCccccccccCcccccchhHHHhhhccCCcchh
Q psy7710 279 RGEYLLLNPAKQH-LVR-GNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWR 356 (473)
Q Consensus 279 ~g~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (473)
.+....+..+... ... ..++..... .+....|+.|..++++.+|-+.... . ...+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~P~~~~~~~v~~~~~~~----~---~~~~--------------- 221 (295)
T TIGR02032 165 VAARAEVEMPDEEVDEDFVEVYIDRGI-SPGGYGWVFPKGDGTANVGVGSRSA----E---EGED--------------- 221 (295)
T ss_pred eEEEEEEecCCcccCcceEEEEcCCCc-CCCceEEEEeCCCCeEEEeeeeccC----C---CCCC---------------
Confidence 2332233222100 000 001110000 0112368889888878787542210 0 0001
Q ss_pred ccchhhhhchHHHHhhhcchhHHHHHhhcccCCCCCCcccCCCeeceE
Q psy7710 357 LGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQ 404 (473)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~ 404 (473)
. +..++...+.+|.+...++.+.+.+..|+
T Consensus 222 ---------~---------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 251 (295)
T TIGR02032 222 ---------L---------KKYLKDFLARRPELKDAETVEVIGAPIPI 251 (295)
T ss_pred ---------H---------HHHHHHHHHhCcccccCcEEeeeceeecc
Confidence 1 12235566667888888888877777765
No 36
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.57 E-value=1.4e-13 Score=135.64 Aligned_cols=86 Identities=16% Similarity=0.283 Sum_probs=69.4
Q ss_pred ceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeee
Q psy7710 200 IVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFR 279 (473)
Q Consensus 200 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~ 279 (473)
.++...+.+.|.+.+++.|++++++++|+++..+++++.|++.+|.+++||.||.|+|.+| .+.+.+|++....-++.+
T Consensus 109 ~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S-~vr~~~g~~~~~~~~~~~ 187 (392)
T PRK08773 109 IVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAS-TLRELAGLPVSRHDYAQR 187 (392)
T ss_pred EEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCc-hHHHhhcCCceEEEeccE
Confidence 3566778889999999999999999999999988888888888777899999999999999 688888876422224456
Q ss_pred eEEEEeC
Q psy7710 280 GEYLLLN 286 (473)
Q Consensus 280 g~~~~~~ 286 (473)
+++..++
T Consensus 188 ~~~~~v~ 194 (392)
T PRK08773 188 GVVAFVD 194 (392)
T ss_pred EEEEEEE
Confidence 6665544
No 37
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.54 E-value=1.2e-12 Score=129.62 Aligned_cols=86 Identities=17% Similarity=0.221 Sum_probs=69.1
Q ss_pred ceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeee
Q psy7710 200 IVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFR 279 (473)
Q Consensus 200 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~ 279 (473)
.++...+.+.|.+.+.+.|++++++++|+++..+++.+.|++.+|.+++||.||.|+|.+|. +.+.+|++.....++..
T Consensus 107 ~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~-vr~~~g~~~~~~~~~~~ 185 (403)
T PRK07333 107 MVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSK-LRELAGIKTVGWDYGQS 185 (403)
T ss_pred EeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChH-HHHHcCCCcccccCCCE
Confidence 46778899999999999999999999999999888888888888878999999999999984 78888876422233445
Q ss_pred eEEEEeC
Q psy7710 280 GEYLLLN 286 (473)
Q Consensus 280 g~~~~~~ 286 (473)
+.++.+.
T Consensus 186 ~~~~~~~ 192 (403)
T PRK07333 186 GIVCTVE 192 (403)
T ss_pred EEEEEEE
Confidence 5555443
No 38
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.54 E-value=5.2e-13 Score=131.31 Aligned_cols=211 Identities=21% Similarity=0.224 Sum_probs=121.0
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHh
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDK 135 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (473)
.++||+|||||++|++||+.|+++ |++|+|+||.+.+|...-+ ++.+.+. .+ ++
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~--G~~VlvlEk~~~~G~k~~~--~~~~~~~------~l----------------~~ 55 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKA--GLDVLVLEKGSEPGAKPCC--GGGLSPR------AL----------------EE 55 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHc--CCeEEEEecCCCCCCCccc--cceechh------hH----------------HH
Confidence 469999999999999999999999 8999999998777643222 1222111 00 00
Q ss_pred cCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEec--CCccceeHHHHHHHHHHH
Q psy7710 136 RNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHS--PNTGIVDWGLVTRVMGEE 213 (473)
Q Consensus 136 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~--~~~~~~~~~~~~~~l~~~ 213 (473)
+..++... + ...+....+.. + .....+.. +....++-..+.++|++.
T Consensus 56 l~~~~~~~-----------------i----~~~v~~~~~~~--------~--~~~~~~~~~~~~~y~v~R~~fd~~La~~ 104 (396)
T COG0644 56 LIPDFDEE-----------------I----ERKVTGARIYF--------P--GEKVAIEVPVGEGYIVDRAKFDKWLAER 104 (396)
T ss_pred hCCCcchh-----------------h----heeeeeeEEEe--------c--CCceEEecCCCceEEEEhHHhhHHHHHH
Confidence 00000000 0 00000000000 0 00001111 223356778899999999
Q ss_pred HHHcCcEEEeCceEEEEEEcCCeEEEE-cCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEeCcCcccC
Q psy7710 214 FCELGGEIRLNQQVESFKENPESVTIS-TKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHL 292 (473)
Q Consensus 214 ~~~~Gv~i~~~~~V~~i~~~~~~v~v~-~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~~~~~~~~ 292 (473)
+++.|++++.+++|..+..+++++.+. ..++.+++|+.||.|+|..+ .+.+.+|+....+-.-.-++.-.+..+....
T Consensus 105 A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s-~l~~~lg~~~~~~~~~~~~~~e~~~~~~~~~ 183 (396)
T COG0644 105 AEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNS-ALARKLGLKDRKPEDYAIGVKEVIEVPDDGD 183 (396)
T ss_pred HHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcch-HHHHHhCCCCCChhheeEEeEEEEecCCCCc
Confidence 999999999999999999888665433 33336899999999999987 6778888761111111122222222221111
Q ss_pred cccccccCCCCCCCccEEEEecCCCCeEEECCC
Q psy7710 293 VRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPN 325 (473)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~ 325 (473)
.....+ .+....+..+.++.|..++.+.+|-.
T Consensus 184 ~~~~~~-~~~~~~~~Gy~wifP~~~~~~~VG~g 215 (396)
T COG0644 184 VEEFLY-GPLDVGPGGYGWIFPLGDGHANVGIG 215 (396)
T ss_pred eEEEEe-cCCccCCCceEEEEECCCceEEEEEE
Confidence 111111 11112223356888998887777764
No 39
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.51 E-value=1e-12 Score=129.46 Aligned_cols=70 Identities=14% Similarity=0.208 Sum_probs=60.4
Q ss_pred ceeHHHHHHHHHHHHHHcC-cEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCC
Q psy7710 200 IVDWGLVTRVMGEEFCELG-GEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSL 271 (473)
Q Consensus 200 ~~~~~~~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~ 271 (473)
.++...+.+.|.+.+++.| ++++ +++|+++..+++.+.|++.+|.+++||.||.|+|.+|. +.+.+|+..
T Consensus 107 ~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S~-vr~~~~~~~ 177 (388)
T PRK07608 107 IVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHSW-VRSQAGIKA 177 (388)
T ss_pred EEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCch-HHHhcCCCc
Confidence 4667888999999998887 9998 99999998888888888888878999999999999985 788888764
No 40
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.49 E-value=6.8e-12 Score=122.27 Aligned_cols=118 Identities=17% Similarity=0.141 Sum_probs=80.1
Q ss_pred ceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeee
Q psy7710 200 IVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFR 279 (473)
Q Consensus 200 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~ 279 (473)
.++...+-+.+.+.+. .+..++.++.|++|...++.+.|++.+|.+++|+.||.|.|..+. ... ....+-..
T Consensus 83 ~i~~~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~-~~~------~~~~Q~f~ 154 (374)
T PF05834_consen 83 MIDRADFYEFLLERAA-AGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP-KAR------PLGLQHFY 154 (374)
T ss_pred EEEHHHHHHHHHHHhh-hCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc-ccc------ccccceeE
Confidence 5677888888999988 455667899999999998888888999889999999999996553 111 12344567
Q ss_pred eEEEEeCcCcccCcc-cc-cccCCCCCCCccEEEEecCCCCeEEECCC
Q psy7710 280 GEYLLLNPAKQHLVR-GN-IYPVPDPNFPFLGVHFTPRMDGSVWLGPN 325 (473)
Q Consensus 280 g~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~p~~~g~~~iG~~ 325 (473)
|..+.++.+.-..-. .. -+..+....+...+|+.|..+++.++..|
T Consensus 155 G~~v~~~~~~f~~~~~~lMD~r~~~~~~~~~F~Y~lP~~~~~alvE~T 202 (374)
T PF05834_consen 155 GWEVETDEPVFDPDTATLMDFRVPQSADGPSFLYVLPFSEDRALVEET 202 (374)
T ss_pred EEEEeccCCCCCCCceEEEEecccCCCCCceEEEEEEcCCCeEEEEEE
Confidence 777777655211100 10 11222220122356999998899888876
No 41
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.49 E-value=2.8e-12 Score=129.85 Aligned_cols=193 Identities=18% Similarity=0.146 Sum_probs=105.7
Q ss_pred CCCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHH-HHHhH-HHHHH
Q psy7710 54 SPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKL-CVEGM-NLAYE 131 (473)
Q Consensus 54 ~~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~-~~~~~-~~~~~ 131 (473)
++.++||||||+|++|+++|++++++ |.+|+||||.+..| ++|..+.|.+... ........ ...+. +.+.+
T Consensus 58 ~~~~~DVvVVG~G~AGl~AAi~Aa~~--Ga~VivlEK~~~~G-G~s~~s~Gg~~~~----~~~~~~~~g~~d~~~~~~~~ 130 (506)
T PRK06481 58 LKDKYDIVIVGAGGAGMSAAIEAKDA--GMNPVILEKMPVAG-GNTMKASSGMNAS----ETKFQKAQGIADSNDKFYEE 130 (506)
T ss_pred ccccCCEEEECcCHHHHHHHHHHHHC--CCCEEEEECCCCCC-CcccccCCccccC----ChHHHHhcCCCCCHHHHHHH
Confidence 34578999999999999999999999 99999999996544 4444444433211 00000000 00001 11222
Q ss_pred HHHhcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHH
Q psy7710 132 YFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMG 211 (473)
Q Consensus 132 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~ 211 (473)
+.+. +........+.. -.+...+.++++.+.|+ .+..+.. +........+.|.++......++..|.
T Consensus 131 ~~~~-~~~~~d~~l~~~----~~~~s~~~i~wl~~~Gv-~~~~~~~-------~~g~~~~r~~~p~~g~~~g~~l~~~L~ 197 (506)
T PRK06481 131 TLKG-GGGTNDKALLRY----FVDNSASAIDWLDSMGI-KLDNLTI-------TGGMSEKRTHRPHDGSAVGGYLVDGLL 197 (506)
T ss_pred HHHh-cCCCCCHHHHHH----HHhccHHHHHHHHHcCc-eEeeccc-------CCCCCCCceeccCCCCCChHHHHHHHH
Confidence 2111 000000000000 00111233445555555 2221100 000001122334444444567888999
Q ss_pred HHHHHcCcEEEeCceEEEEEEcCCeE---EEEcCCC--cEEEcCEEEEcCCcCh--HHHHHh
Q psy7710 212 EEFCELGGEIRLNQQVESFKENPESV---TISTKQG--DHLESSYALVCAGLQA--DEMALK 266 (473)
Q Consensus 212 ~~~~~~Gv~i~~~~~V~~i~~~~~~v---~v~~~~g--~~i~ad~VV~aaG~~s--~~l~~~ 266 (473)
+.+++.|++++++++|++|..+++++ .+...++ .+++||.||+|+|+++ .++++.
T Consensus 198 ~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m~~~ 259 (506)
T PRK06481 198 KNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDMIAK 259 (506)
T ss_pred HHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHHHHH
Confidence 99999999999999999998766643 3444443 3689999999999884 345544
No 42
>PLN02463 lycopene beta cyclase
Probab=99.47 E-value=3.2e-11 Score=119.21 Aligned_cols=61 Identities=15% Similarity=0.168 Sum_probs=53.8
Q ss_pred ceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChH
Q psy7710 200 IVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD 261 (473)
Q Consensus 200 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~ 261 (473)
.++...+.+.|.+.+.+.|++++ .++|++|..+++++.|++++|.+++||.||.|+|..+.
T Consensus 110 ~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 110 RVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred eEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence 56778888999999988999996 67999999888888899988888999999999999874
No 43
>PLN02697 lycopene epsilon cyclase
Probab=99.46 E-value=1.1e-11 Score=124.24 Aligned_cols=121 Identities=12% Similarity=0.132 Sum_probs=80.5
Q ss_pred ceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEE-EEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeee
Q psy7710 200 IVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVT-ISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPF 278 (473)
Q Consensus 200 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~-v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~ 278 (473)
.++...+.+.|.+.+.+.|+++ .+++|+++..+++++. +.+.+|.+++|+.||.|+|.+|..++...-.....+....
T Consensus 188 ~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S~rl~~~~~~~~~~~~Q~a 266 (529)
T PLN02697 188 RVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAASGRLLQYEVGGPRVCVQTA 266 (529)
T ss_pred EEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcChhhhhccccCCCCcccEEE
Confidence 5777888999999999999998 6889999988766654 4556666899999999999999655431111112346788
Q ss_pred eeEEEEeCcCcccCccccccc-----CC-----CCCCCccEEEEecCCCCeEEE
Q psy7710 279 RGEYLLLNPAKQHLVRGNIYP-----VP-----DPNFPFLGVHFTPRMDGSVWL 322 (473)
Q Consensus 279 ~g~~~~~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~~~~p~~~g~~~i 322 (473)
.|+.+.+..++...-...... .+ ....| ..+|+.|..++++.+
T Consensus 267 ~Gi~ve~~~~~~d~~~~vlMD~r~~~~~~~~~~~~~~p-~FlYvlP~~~~~~~V 319 (529)
T PLN02697 267 YGVEVEVENNPYDPSLMVFMDYRDYFKEKVSHLEAEYP-TFLYAMPMSSTRVFF 319 (529)
T ss_pred EEEEEEecCCCCCcchheeeccccccccccccccCCCc-eEEEEeecCCCeEEE
Confidence 999988865332111011101 00 11112 246999998888888
No 44
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.45 E-value=1.8e-11 Score=120.53 Aligned_cols=71 Identities=13% Similarity=0.230 Sum_probs=61.1
Q ss_pred ceeHHHHHHHHHHHHHHcC-cEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCC
Q psy7710 200 IVDWGLVTRVMGEEFCELG-GEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSL 271 (473)
Q Consensus 200 ~~~~~~~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~ 271 (473)
.++...+.+.|.+.+.+.| ++++++++|+++..+++++.+++.+|.++++|.||.|.|.+| .+.+.++++.
T Consensus 102 ~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S-~vr~~l~~~~ 173 (385)
T TIGR01988 102 VVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANS-KVRQLAGIPT 173 (385)
T ss_pred EEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCCC-HHHHHcCCCc
Confidence 3556778899999998888 999999999999988888888888887899999999999998 5777777654
No 45
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.44 E-value=4e-11 Score=118.12 Aligned_cols=123 Identities=11% Similarity=0.009 Sum_probs=78.8
Q ss_pred ceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEc-CCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeee
Q psy7710 200 IVDWGLVTRVMGEEFCELGGEIRLNQQVESFKEN-PESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPF 278 (473)
Q Consensus 200 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~ 278 (473)
.++...+.+.|.+.+.+.|++++ .++|..+..+ ++.+.|++.+|.+++|+.||.|+|.++ +.+.........+...
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s--~~~~~~~~~~~~~q~~ 157 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP--LVQYVRFPLNVGFQVA 157 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch--hcccccCCCCceEEEE
Confidence 46778899999999998999986 6688888877 566778888877899999999999997 2221111112245567
Q ss_pred eeEEEEeCcCcccCcccccccC--CCC------CCCccEEEEecCCCCeEEECCC
Q psy7710 279 RGEYLLLNPAKQHLVRGNIYPV--PDP------NFPFLGVHFTPRMDGSVWLGPN 325 (473)
Q Consensus 279 ~g~~~~~~~~~~~~~~~~~~~~--~~~------~~~~~~~~~~p~~~g~~~iG~~ 325 (473)
.|+.+.+..++...-....+.. ... ......+|+.|..+++..++.+
T Consensus 158 ~G~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~lP~~~~~~~v~~~ 212 (388)
T TIGR01790 158 YGVEARLSRPPHGPSSMVIMDARVDQLAAPELKGYRPTFLYAMPLGSTRVFIEET 212 (388)
T ss_pred EEEEEEEcCCCCCCCceEEEeccccccccccccCCCCceEEEeecCCCeEEEEec
Confidence 8888877533211101011111 100 0000146888988888888754
No 46
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.44 E-value=4.4e-12 Score=115.76 Aligned_cols=137 Identities=20% Similarity=0.252 Sum_probs=88.6
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHh
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDK 135 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (473)
.++||+|||||++|+++|+.|+++ |.+|+|+||...+|++.+. .+...+..... ....++
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~--G~~V~vlEk~~~~Ggg~~~--gg~~~~~~~~~-------------~~~~~~--- 79 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKN--GLKVCVLERSLAFGGGSWG--GGMLFSKIVVE-------------KPAHEI--- 79 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCCCccccC--CCcceeccccc-------------chHHHH---
Confidence 468999999999999999999999 9999999999777655432 12211110000 000111
Q ss_pred cCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHHH
Q psy7710 136 RNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFC 215 (473)
Q Consensus 136 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 215 (473)
+.+.++ ..+... .+.+ ..+...+...|.+.+.
T Consensus 80 ----------------------------l~~~gi-~~~~~~--------------~g~~-----~~~~~el~~~L~~~a~ 111 (254)
T TIGR00292 80 ----------------------------LDEFGI-RYEDEG--------------DGYV-----VADSAEFISTLASKAL 111 (254)
T ss_pred ----------------------------HHHCCC-Ceeecc--------------CceE-----EeeHHHHHHHHHHHHH
Confidence 122232 110000 0000 1344678888999999
Q ss_pred HcCcEEEeCceEEEEEEcCC--eE-EEEcC-----------CCcEEEcCEEEEcCCcCh
Q psy7710 216 ELGGEIRLNQQVESFKENPE--SV-TISTK-----------QGDHLESSYALVCAGLQA 260 (473)
Q Consensus 216 ~~Gv~i~~~~~V~~i~~~~~--~v-~v~~~-----------~g~~i~ad~VV~aaG~~s 260 (473)
+.|++++.++.|.++..+++ .+ .|.++ +...++|+.||.|||..+
T Consensus 112 e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a 170 (254)
T TIGR00292 112 QAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDA 170 (254)
T ss_pred HcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCc
Confidence 99999999999999987655 23 34332 124789999999999875
No 47
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.44 E-value=2.4e-12 Score=109.28 Aligned_cols=137 Identities=20% Similarity=0.246 Sum_probs=90.6
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHh
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDK 135 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (473)
...||+|||||++||++||+|+++ |+||+|+||...+|+|... +|++.+..-. .+...++.++
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~--g~kV~i~E~~ls~GGG~w~--GGmlf~~iVv-------------~~~a~~iL~e 91 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKA--GLKVAIFERKLSFGGGIWG--GGMLFNKIVV-------------REEADEILDE 91 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhC--CceEEEEEeecccCCcccc--cccccceeee-------------cchHHHHHHH
Confidence 457999999999999999999999 9999999999777766532 2222111000 0111223333
Q ss_pred cCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHHH
Q psy7710 136 RNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFC 215 (473)
Q Consensus 136 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 215 (473)
++++|...+. +++ ..|+..++..|...+.
T Consensus 92 ~gI~ye~~e~----------------------------------------------g~~-----v~ds~e~~skl~~~a~ 120 (262)
T COG1635 92 FGIRYEEEED----------------------------------------------GYY-----VADSAEFASKLAARAL 120 (262)
T ss_pred hCCcceecCC----------------------------------------------ceE-----EecHHHHHHHHHHHHH
Confidence 3333321110 011 3456778888988999
Q ss_pred HcCcEEEeCceEEEEEEcCC-eEE-EEcC-----------CCcEEEcCEEEEcCCcCh
Q psy7710 216 ELGGEIRLNQQVESFKENPE-SVT-ISTK-----------QGDHLESSYALVCAGLQA 260 (473)
Q Consensus 216 ~~Gv~i~~~~~V~~i~~~~~-~v~-v~~~-----------~g~~i~ad~VV~aaG~~s 260 (473)
+.|++|+..+.|+++...++ ++. |.++ |-..++|++||-|||.-+
T Consensus 121 ~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda 178 (262)
T COG1635 121 DAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDA 178 (262)
T ss_pred hcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCch
Confidence 99999999999999986655 332 2211 124688999999999876
No 48
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.43 E-value=4.3e-12 Score=116.20 Aligned_cols=138 Identities=18% Similarity=0.198 Sum_probs=90.3
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHh
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDK 135 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (473)
.++||+|||||++|+++|++|++. |++|+|+|+...+|++.++ .+.+.... .. .
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~--G~~V~liEk~~~~Ggg~~~--gg~~~~~~-----~v--------~--------- 77 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKA--GLKVAVFERKLSFGGGMWG--GGMLFNKI-----VV--------Q--------- 77 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhC--CCeEEEEecCCCCCCcccc--Cccccccc-----cc--------h---------
Confidence 468999999999999999999999 9999999998777654321 11110000 00 0
Q ss_pred cCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHHH
Q psy7710 136 RNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFC 215 (473)
Q Consensus 136 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 215 (473)
......+.+.++ ...... +....+++..+...|.+.++
T Consensus 78 ----------------------~~~~~~l~~~gv-~~~~~~-------------------~g~~~vd~~~l~~~L~~~A~ 115 (257)
T PRK04176 78 ----------------------EEADEILDEFGI-RYKEVE-------------------DGLYVADSVEAAAKLAAAAI 115 (257)
T ss_pred ----------------------HHHHHHHHHCCC-Cceeec-------------------CcceeccHHHHHHHHHHHHH
Confidence 011122223333 111100 00113567788999999999
Q ss_pred HcCcEEEeCceEEEEEEcCC-eE-EEEcC-----------CCcEEEcCEEEEcCCcChH
Q psy7710 216 ELGGEIRLNQQVESFKENPE-SV-TISTK-----------QGDHLESSYALVCAGLQAD 261 (473)
Q Consensus 216 ~~Gv~i~~~~~V~~i~~~~~-~v-~v~~~-----------~g~~i~ad~VV~aaG~~s~ 261 (473)
+.|++++++++|+++..+++ .+ .+... +...++|+.||+|+|.++.
T Consensus 116 ~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~ 174 (257)
T PRK04176 116 DAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAE 174 (257)
T ss_pred HcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcH
Confidence 99999999999999986544 33 23221 1247999999999999974
No 49
>PRK07121 hypothetical protein; Validated
Probab=99.43 E-value=1.7e-11 Score=124.23 Aligned_cols=197 Identities=19% Similarity=0.162 Sum_probs=102.5
Q ss_pred CCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEee--ccCCCchhHHHHH-HHhHHHHHH
Q psy7710 55 PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAG--IYYKPGTLKAKLC-VEGMNLAYE 131 (473)
Q Consensus 55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~--~~~~~~~~~~~~~-~~~~~~~~~ 131 (473)
+.++||||||+|++|+++|++++++ |.+|+||||.+ ..+++|..+.|.+... ... ..... ..+.+.+.+
T Consensus 18 ~~~~DVvVVGaG~AGl~AA~~aae~--G~~VillEK~~-~~gG~s~~sgG~~~~~~g~~~-----q~~~g~~d~~~~~~~ 89 (492)
T PRK07121 18 DDEADVVVVGFGAAGACAAIEAAAA--GARVLVLERAA-GAGGATALSGGVIYLGGGTAV-----QKAAGFEDSPENMYA 89 (492)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHC--CCeEEEEeCCC-CCCCcccccCeEEEeCCCcHH-----HHhcCCCCCHHHHHH
Confidence 4679999999999999999999999 99999999985 4556676677765432 100 00000 000111111
Q ss_pred HH-HhcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCC------------------cc-c-c
Q psy7710 132 YF-DKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPY------------------CK-G-V 190 (473)
Q Consensus 132 ~~-~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~------------------~~-~-~ 190 (473)
.. +..+-..+. ..+.. -.+...+.++++.++|+ .+......+ ...+|. .. . .
T Consensus 90 ~~~~~~~~~~d~-~l~~~----~~~~s~~~i~wl~~~Gv-~f~~~~~~~-~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~ 162 (492)
T PRK07121 90 YLRVAVGPGVDE-EKLRR----YCEGSVEHFDWLEGLGV-PFERSFFPE-KTSYPPNDEGLYYSGNEKAWPFAEIAKPAP 162 (492)
T ss_pred HHHHHhCCCCCH-HHHHH----HHHccHHHHHHHHHcCc-EEEeccCCC-cccCCCCCcccccchhhcchhhhhccCCcc
Confidence 11 100000000 00000 00111223334444444 221100000 000000 00 0 0
Q ss_pred eeEecCCccce-eHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcC-CeE-EEEcC-CC--cEEEc-CEEEEcCCcCh--H
Q psy7710 191 KAIHSPNTGIV-DWGLVTRVMGEEFCELGGEIRLNQQVESFKENP-ESV-TISTK-QG--DHLES-SYALVCAGLQA--D 261 (473)
Q Consensus 191 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~-~~v-~v~~~-~g--~~i~a-d~VV~aaG~~s--~ 261 (473)
........+.. ....+...|.+.+++.|++|+++++|++|..++ +.+ .|... ++ ..++| +.||+|+|+++ .
T Consensus 163 ~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~N~ 242 (492)
T PRK07121 163 RGHRVQGPGDSGGGAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAMNR 242 (492)
T ss_pred cceecCCCCCCCchHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCcCH
Confidence 00111111111 356788899999999999999999999998764 333 34332 22 35789 99999999884 4
Q ss_pred HHHHh
Q psy7710 262 EMALK 266 (473)
Q Consensus 262 ~l~~~ 266 (473)
++++.
T Consensus 243 em~~~ 247 (492)
T PRK07121 243 EMVAR 247 (492)
T ss_pred HHHHH
Confidence 55543
No 50
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.41 E-value=8.5e-12 Score=123.57 Aligned_cols=71 Identities=15% Similarity=0.304 Sum_probs=61.0
Q ss_pred ceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCC
Q psy7710 200 IVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSL 271 (473)
Q Consensus 200 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~ 271 (473)
.++...+.+.|.+.+++.|++++++++|+++..+++++.|++.+|.+++||.||.|+|.+| .+.+.+|++.
T Consensus 108 ~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S-~vR~~lg~~~ 178 (405)
T PRK05714 108 IVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANS-AVRRLAGCAT 178 (405)
T ss_pred EEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCc-hhHHhcCCCc
Confidence 3455677788888888889999999999999988888888888887899999999999998 6878888754
No 51
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.41 E-value=1.3e-11 Score=123.49 Aligned_cols=188 Identities=20% Similarity=0.196 Sum_probs=100.7
Q ss_pred cEEEEcCChHHHHHHHHHHhcCCC-CeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHH-HHhHH-HHHHHHHh
Q psy7710 59 DVVVVGGGIVGVATARELKLNYPK-MKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLC-VEGMN-LAYEYFDK 135 (473)
Q Consensus 59 dVvIIGaGi~Gl~~A~~L~~~~~G-~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~ 135 (473)
||||||+|++|+++|++++++ | .+|+||||.+ ..+++|..+.|.+...... ...... ..+.+ .+.++.+.
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~--G~~~V~vlEk~~-~~gg~s~~s~g~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~ 73 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKA--GAANVVLLEKMP-VIGGNSAIAAGGMNAAGTD----QQKALGIEDSPELFIKDTLKG 73 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHc--CCccEEEEecCC-CCCCcccccCceeecCCCH----HHHhcCCCCCHHHHHHHHHHh
Confidence 799999999999999999999 9 9999999985 5556676666655432110 000000 00111 11111111
Q ss_pred cCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHHH
Q psy7710 136 RNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFC 215 (473)
Q Consensus 136 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 215 (473)
..... ...+.-. -.+.....++++. .++ .++.-. . ..+........+.+..+......+...|.+.++
T Consensus 74 -~~~~~-~~~l~~~---~~~~~~~~i~wl~-~~~-~~~~~~---~--~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~ 141 (439)
T TIGR01813 74 -GRGIN-DPELVRI---LAEESADAVDWLQ-DGV-GARLDD---L--IQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAK 141 (439)
T ss_pred -cCCCC-CHHHHHH---HHhccHHHHHHHH-hCC-Ceeecc---c--cccCCcCCCccccCCCCCCCHHHHHHHHHHHHH
Confidence 00000 0000000 0000111223333 222 111100 0 000000011122333444556788999999999
Q ss_pred HcCcEEEeCceEEEEEEcC-Ce---EEEEcCCCc--EEEcCEEEEcCCcChH--HHHH
Q psy7710 216 ELGGEIRLNQQVESFKENP-ES---VTISTKQGD--HLESSYALVCAGLQAD--EMAL 265 (473)
Q Consensus 216 ~~Gv~i~~~~~V~~i~~~~-~~---v~v~~~~g~--~i~ad~VV~aaG~~s~--~l~~ 265 (473)
+.|++|+++++|++|..++ +. +.+.+.++. .+.+|.||+|+|+++. ++.+
T Consensus 142 ~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n~~m~~ 199 (439)
T TIGR01813 142 KEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSNKEMIA 199 (439)
T ss_pred HcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCCCHHHHH
Confidence 9999999999999999854 32 334444553 4689999999999853 4444
No 52
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.41 E-value=7.2e-12 Score=124.28 Aligned_cols=69 Identities=19% Similarity=0.265 Sum_probs=56.3
Q ss_pred ceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEE-EEcCCCcEEEcCEEEEcCCcChHHHHHhcCCC
Q psy7710 200 IVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVT-ISTKQGDHLESSYALVCAGLQADEMALKSGCS 270 (473)
Q Consensus 200 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~-v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~ 270 (473)
.+....+-+.|.+.+++.|++++.+++|+++..+++.+. +.+ ++.+++||.||.|+|.++ .+.+.+|+.
T Consensus 104 ~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~-~g~~i~A~~VI~A~G~~s-~l~~~lgl~ 173 (428)
T PRK10157 104 SVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEA-DGDVIEAKTVILADGVNS-ILAEKLGMA 173 (428)
T ss_pred eeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEc-CCcEEECCEEEEEeCCCH-HHHHHcCCC
Confidence 345567888899999999999999999999987776654 444 445899999999999986 678888875
No 53
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.40 E-value=1.1e-11 Score=125.03 Aligned_cols=184 Identities=12% Similarity=0.103 Sum_probs=100.8
Q ss_pred CCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCc-ccCcccCCCcceEEeeccCCCchhHHHHHHHh-HHHHHHH
Q psy7710 55 PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKE-LGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEG-MNLAYEY 132 (473)
Q Consensus 55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~-~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 132 (473)
+.++||+|||+|++|+++|++++++ |.+|+||||.+. ..+++|..+.|+..... .... ......+ .+.+.++
T Consensus 2 ~~~~DVvVVG~G~aGl~AA~~aa~~--G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~--~~~~--~~~~~~~~~~~~~~~ 75 (466)
T PRK08274 2 ASMVDVLVIGGGNAALCAALAAREA--GASVLLLEAAPREWRGGNSRHTRNLRCMHD--APQD--VLVGAYPEEEFWQDL 75 (466)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCCCcCCCcccccCCceeeeCC--Cchh--hccccccHHHHHHHH
Confidence 3578999999999999999999999 999999999853 24566666666322211 0000 0000011 1122222
Q ss_pred HHhcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHH
Q psy7710 133 FDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGE 212 (473)
Q Consensus 133 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~ 212 (473)
.+..+-.... ..+.. -.+...+.++++.+.|+ .+........ .+ .....+... ....+...|.+
T Consensus 76 ~~~~~~~~~~-~~~~~----~~~~s~~~~~wl~~~Gv-~~~~~~~~~~---~~---~~~~~~~~g----~g~~l~~~l~~ 139 (466)
T PRK08274 76 LRVTGGRTDE-ALARL----LIRESSDCRDWMRKHGV-RFQPPLSGAL---HV---ARTNAFFWG----GGKALVNALYR 139 (466)
T ss_pred HHhhCCCCCH-HHHHH----HHHcCHHHHHHHHhCCc-eEeecCCCcc---cc---CCCCeeecC----CHHHHHHHHHH
Confidence 2211100000 00000 00111233444555665 3322111000 00 000001111 14668888999
Q ss_pred HHHHcCcEEEeCceEEEEEEcCCeEE-EEc--CCC--cEEEcCEEEEcCCcCh
Q psy7710 213 EFCELGGEIRLNQQVESFKENPESVT-IST--KQG--DHLESSYALVCAGLQA 260 (473)
Q Consensus 213 ~~~~~Gv~i~~~~~V~~i~~~~~~v~-v~~--~~g--~~i~ad~VV~aaG~~s 260 (473)
.+++.|++++++++|++|..+++++. |.+ .++ ..++|+.||+|+|++.
T Consensus 140 ~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~ 192 (466)
T PRK08274 140 SAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGGFE 192 (466)
T ss_pred HHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCCCC
Confidence 99999999999999999988666543 443 233 4689999999999873
No 54
>PRK06847 hypothetical protein; Provisional
Probab=99.40 E-value=2.9e-11 Score=118.63 Aligned_cols=64 Identities=16% Similarity=0.275 Sum_probs=55.9
Q ss_pred ceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHH
Q psy7710 200 IVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEM 263 (473)
Q Consensus 200 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l 263 (473)
.++...+.+.|.+.+.+.|++++++++|+++..+++.+.|.+.+|.++++|.||.|+|.+|..-
T Consensus 103 ~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s~~r 166 (375)
T PRK06847 103 GIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSKVR 166 (375)
T ss_pred cCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCcchh
Confidence 4566778889999998899999999999999988888888888887899999999999998543
No 55
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.40 E-value=7.2e-11 Score=116.12 Aligned_cols=71 Identities=8% Similarity=0.147 Sum_probs=61.4
Q ss_pred ceeHHHHHHHHHHHHHH-cCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCC
Q psy7710 200 IVDWGLVTRVMGEEFCE-LGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSL 271 (473)
Q Consensus 200 ~~~~~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~ 271 (473)
.++...+.+.|.+.+.+ .|++++++++|+++..+++++.|++.+|.+++||.||.|.|.+| .+.+.++++.
T Consensus 101 ~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S-~vr~~l~~~~ 172 (382)
T TIGR01984 101 VVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANS-KVRELLSIPT 172 (382)
T ss_pred EEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCCh-HHHHHcCCCC
Confidence 36678899999999988 49999999999999988888888888887899999999999998 4888887663
No 56
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.39 E-value=1.1e-11 Score=123.31 Aligned_cols=188 Identities=20% Similarity=0.185 Sum_probs=98.4
Q ss_pred cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeec-cCC-----CchhHHHHHHHhHHHHHHH
Q psy7710 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGI-YYK-----PGTLKAKLCVEGMNLAYEY 132 (473)
Q Consensus 59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~ 132 (473)
||+|||+|++|+++|+.++++ |.+|+||||.+..++ ++..+.|.+.... ... .+.. ...+.++
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~--G~~V~lvek~~~~gg-~~~~s~g~~~~~~~~~~~~~~~~d~~--------~~~~~~~ 69 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEA--GAKVLLVEKGPRLGG-SSAFSSGGFDAAGTPPQREAGIEDSP--------EEFFQDI 69 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHT--TT-EEEEESSSGGGS-GGGGTCSEEEESSSHSSHHTTTTCHH--------HHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHhhh--cCeEEEEEeeccccc-ccccccCceeeecccccccccccccc--------cccceee
Confidence 899999999999999999999 999999999966555 5666666554332 111 0111 1111111
Q ss_pred HHhcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhh--cCCcccc-eeEe-cCC---ccceeHHH
Q psy7710 133 FDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTI--EPYCKGV-KAIH-SPN---TGIVDWGL 205 (473)
Q Consensus 133 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~--~p~~~~~-~~~~-~~~---~~~~~~~~ 205 (473)
.+...-.... ..+.. -.+...+.++++.+.|+ .+..- .+..... .+..... ...+ ... ........
T Consensus 70 ~~~~~~~~~~-~~~~~----~~~~~~~~~~~l~~~g~-~~~~~-~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~ 142 (417)
T PF00890_consen 70 MAAGGGLNDP-DLVRA----FVENSPEAIDWLEELGV-PFRRD-EDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKA 142 (417)
T ss_dssp HHHTTT-S-H-HHHHH----HHHHHHHHHHHHHHTT---B-BG-TTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHH
T ss_pred eccccccccc-chhhh----hhhcccceehhhhhhcc-ccccc-ccccccccccCCccccceeeeccccccccccccHHH
Confidence 1111100000 00000 01233445555666655 22210 0000000 0000001 0111 111 11224577
Q ss_pred HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEE---EE-cCCC--cEEEcCEEEEcCCcChHHHH
Q psy7710 206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVT---IS-TKQG--DHLESSYALVCAGLQADEMA 264 (473)
Q Consensus 206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~---v~-~~~g--~~i~ad~VV~aaG~~s~~l~ 264 (473)
+...|.+.++++|++|+++++|++|..++++|. +. ..+| ..++|+.||+|||.++.++.
T Consensus 143 ~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~~~~ 207 (417)
T PF00890_consen 143 LIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGGELL 207 (417)
T ss_dssp HHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGGHHH
T ss_pred HHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCccccccc
Confidence 899999999999999999999999999877654 33 2345 35789999999999975343
No 57
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.38 E-value=2e-11 Score=120.31 Aligned_cols=70 Identities=19% Similarity=0.310 Sum_probs=58.2
Q ss_pred eeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCC
Q psy7710 201 VDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSL 271 (473)
Q Consensus 201 ~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~ 271 (473)
++...+.+.|.+.+.+.+...+++++|+++..+++.+.|++++|.+++||.||.|+|.+| .+.+.+|++.
T Consensus 108 i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S-~vr~~~g~~~ 177 (388)
T PRK07494 108 IPNWLLNRALEARVAELPNITRFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRNS-PVREAAGIGV 177 (388)
T ss_pred eEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCc-hhHHhcCCCc
Confidence 555678888888888775444889999999988888888888887899999999999998 5778888764
No 58
>PRK06185 hypothetical protein; Provisional
Probab=99.38 E-value=2.3e-11 Score=120.61 Aligned_cols=82 Identities=13% Similarity=0.134 Sum_probs=60.8
Q ss_pred eeHHHHHHHHHHHHHHc-CcEEEeCceEEEEEEcCCeE---EEEcCCCc-EEEcCEEEEcCCcChHHHHHhcCCCCCCce
Q psy7710 201 VDWGLVTRVMGEEFCEL-GGEIRLNQQVESFKENPESV---TISTKQGD-HLESSYALVCAGLQADEMALKSGCSLEPAI 275 (473)
Q Consensus 201 ~~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~v---~v~~~~g~-~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~ 275 (473)
+....+.+.|.+.+.+. |++++++++|+++..+++.+ .+.+.+|. +++||.||.|+|.+|. +.+.+|++. ..
T Consensus 105 v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~-vr~~~gi~~--~~ 181 (407)
T PRK06185 105 MPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHSR-VRALAGLEV--RE 181 (407)
T ss_pred eehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCchH-HHHHcCCCc--cc
Confidence 44456778888887764 89999999999998877654 34445663 7999999999999984 888888764 34
Q ss_pred eeeeeEEEEe
Q psy7710 276 VPFRGEYLLL 285 (473)
Q Consensus 276 ~p~~g~~~~~ 285 (473)
.+..++.+.+
T Consensus 182 ~~~~~~~~~~ 191 (407)
T PRK06185 182 FGAPMDVLWF 191 (407)
T ss_pred cCCCceeEEE
Confidence 4555555544
No 59
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.38 E-value=1.1e-11 Score=122.20 Aligned_cols=85 Identities=6% Similarity=0.141 Sum_probs=67.4
Q ss_pred eeHHHHHHHHHHHHHHc-CcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeee
Q psy7710 201 VDWGLVTRVMGEEFCEL-GGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFR 279 (473)
Q Consensus 201 ~~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~ 279 (473)
++...+.+.|.+.+++. |++++++++|+++..+++++.|++.+|.+++||.||.|.|.+| .+.+.+|+......++..
T Consensus 109 i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S-~vR~~~~~~~~~~~y~~~ 187 (391)
T PRK08020 109 VENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANS-QVRQMAGIGVHGWQYRQS 187 (391)
T ss_pred EEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCc-hhHHHcCCCccccCCCce
Confidence 45567788888888776 9999999999999988888888888887899999999999998 488888876543445555
Q ss_pred eEEEEeC
Q psy7710 280 GEYLLLN 286 (473)
Q Consensus 280 g~~~~~~ 286 (473)
++.+.+.
T Consensus 188 ~~~~~~~ 194 (391)
T PRK08020 188 CMLISVK 194 (391)
T ss_pred EEEEEEE
Confidence 5555553
No 60
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.37 E-value=1.9e-11 Score=104.74 Aligned_cols=137 Identities=23% Similarity=0.313 Sum_probs=80.1
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHh
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDK 135 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (473)
.++||+|||||++|+++|++|+++ |+||+|+|+...+|++..+.. +....+-.... ...+.++
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~--g~kV~v~E~~~~~GGg~~~Gg--~lf~~iVVq~~-------------a~~iL~e 78 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKA--GLKVAVIERKLSPGGGMWGGG--MLFNKIVVQEE-------------ADEILDE 78 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHH--TS-EEEEESSSS-BTTTTS-C--TT---EEEETT-------------THHHHHH
T ss_pred ccCCEEEECCChhHHHHHHHHHHC--CCeEEEEecCCCCCccccccc--cccchhhhhhh-------------HHHHHHh
Confidence 468999999999999999999999 999999999877776643211 10000000000 0011122
Q ss_pred cCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHHH
Q psy7710 136 RNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFC 215 (473)
Q Consensus 136 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 215 (473)
+++.+...+ .+++ ..|+..++..|...+.
T Consensus 79 lgi~y~~~~----------------------------------------------~g~~-----v~d~~~~~s~L~s~a~ 107 (230)
T PF01946_consen 79 LGIPYEEYG----------------------------------------------DGYY-----VADSVEFTSTLASKAI 107 (230)
T ss_dssp HT---EE-S----------------------------------------------SEEE-----ES-HHHHHHHHHHHHH
T ss_pred CCceeEEeC----------------------------------------------CeEE-----EEcHHHHHHHHHHHHh
Confidence 222211100 0111 3466778888888888
Q ss_pred HcCcEEEeCceEEEEEEcC-CeEE-EEc------CCC-----cEEEcCEEEEcCCcCh
Q psy7710 216 ELGGEIRLNQQVESFKENP-ESVT-IST------KQG-----DHLESSYALVCAGLQA 260 (473)
Q Consensus 216 ~~Gv~i~~~~~V~~i~~~~-~~v~-v~~------~~g-----~~i~ad~VV~aaG~~s 260 (473)
+.|++|+..+.|+++...+ +++. |.+ ..| ..++|+.||-|||.-+
T Consensus 108 ~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda 165 (230)
T PF01946_consen 108 DAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDA 165 (230)
T ss_dssp TTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSS
T ss_pred cCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCch
Confidence 8999999999999998665 5543 322 122 4789999999999764
No 61
>PRK08244 hypothetical protein; Provisional
Probab=99.37 E-value=8.9e-11 Score=119.17 Aligned_cols=69 Identities=22% Similarity=0.305 Sum_probs=55.5
Q ss_pred eHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEc--CCC-cEEEcCEEEEcCCcChHHHHHhcCCCC
Q psy7710 202 DWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTIST--KQG-DHLESSYALVCAGLQADEMALKSGCSL 271 (473)
Q Consensus 202 ~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~--~~g-~~i~ad~VV~aaG~~s~~l~~~~g~~~ 271 (473)
....+.+.|.+.+++.|++++++++|+++..+++++.++. .+| .+++||+||.|.|.+| .+.+.+|++.
T Consensus 98 ~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S-~vR~~lgi~~ 169 (493)
T PRK08244 98 PQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGS-IVRKQAGIAF 169 (493)
T ss_pred cHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCCh-HHHHhcCCCc
Confidence 3456677788888888999999999999998887776543 345 4799999999999998 5778888764
No 62
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.37 E-value=3.4e-11 Score=122.74 Aligned_cols=180 Identities=17% Similarity=0.133 Sum_probs=99.7
Q ss_pred CCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeecc--CCCchhHHHHHHHh-----HH
Q psy7710 55 PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIY--YKPGTLKAKLCVEG-----MN 127 (473)
Q Consensus 55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~--~~~~~~~~~~~~~~-----~~ 127 (473)
..++||+|||+|++|+++|+.+++. |.+|+||||.. ..+++|..+.|.+..... ..++.........+ .+
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~--G~~VilleK~~-~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~ 90 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRA--GRRVLVVTKAA-LDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPD 90 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHc--CCeEEEEEccC-CCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHH
Confidence 4579999999999999999999999 99999999984 555566655554433211 11111111110000 00
Q ss_pred HHHHHHHhcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHH-HhhcCCcccceeEecCCccceeHHHH
Q psy7710 128 LAYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEI-KTIEPYCKGVKAIHSPNTGIVDWGLV 206 (473)
Q Consensus 128 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~ 206 (473)
.++.+ .+...+.++++.++|+ .+..-....+ ...+.... ..-.+.. .+......+
T Consensus 91 ~v~~~---------------------~~~s~~~i~~L~~~Gv-~f~~~~~G~~~~~~~~g~~-~~r~~~~-~~d~~G~~i 146 (541)
T PRK07804 91 AVRSL---------------------VAEGPRAVRELVALGA-RFDESPDGRWALTREGGHS-RRRIVHA-GGDATGAEV 146 (541)
T ss_pred HHHHH---------------------HHHHHHHHHHHHHcCC-ccccCCCCcEeeeccCCee-cCeeEec-CCCCCHHHH
Confidence 01111 1122333445555555 2211000000 00000000 0001111 011134668
Q ss_pred HHHHHHHHHHcCcEEEeCceEEEEEEcC-Ce---EEEE-----cCCC-cEEEcCEEEEcCCcChH
Q psy7710 207 TRVMGEEFCELGGEIRLNQQVESFKENP-ES---VTIS-----TKQG-DHLESSYALVCAGLQAD 261 (473)
Q Consensus 207 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~-~~---v~v~-----~~~g-~~i~ad~VV~aaG~~s~ 261 (473)
...|.+.+++.|++++.++.|+++..++ +. +.+. ..++ ..+.|+.||+|+|+++.
T Consensus 147 ~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~ 211 (541)
T PRK07804 147 QRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQ 211 (541)
T ss_pred HHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCC
Confidence 8889999999999999999999998764 33 3333 2333 36889999999999763
No 63
>PRK06184 hypothetical protein; Provisional
Probab=99.37 E-value=9.5e-11 Score=119.18 Aligned_cols=68 Identities=16% Similarity=0.296 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEc---CCCcEEEcCEEEEcCCcChHHHHHhcCCCC
Q psy7710 203 WGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTIST---KQGDHLESSYALVCAGLQADEMALKSGCSL 271 (473)
Q Consensus 203 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~---~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~ 271 (473)
...+.+.|.+.+.+.|++|+++++|+++..+++++.++. .++.+++||+||.|+|.+| .+.+.+|++.
T Consensus 108 q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S-~vR~~lgi~~ 178 (502)
T PRK06184 108 QWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRS-FVRKALGIGF 178 (502)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCch-HHHHhCCCCc
Confidence 345667888888888999999999999998887777655 4556899999999999998 5788888765
No 64
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.36 E-value=1.6e-10 Score=113.65 Aligned_cols=69 Identities=16% Similarity=0.266 Sum_probs=55.0
Q ss_pred ceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCC------C--cEEEcCEEEEcCCcChHHHHHhcCCC
Q psy7710 200 IVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQ------G--DHLESSYALVCAGLQADEMALKSGCS 270 (473)
Q Consensus 200 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~------g--~~i~ad~VV~aaG~~s~~l~~~~g~~ 270 (473)
.++...+-+.|.+.+.+.|++++.. .|+++..+++.+.|++.+ + .+++||.||.|+|.+| .+.+.+|+.
T Consensus 88 ~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S-~v~r~lg~~ 164 (388)
T TIGR02023 88 MVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANS-PVAKELGLP 164 (388)
T ss_pred eeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCc-HHHHHcCCC
Confidence 3666788889999999999999754 699998888777765432 2 3799999999999998 577888875
No 65
>PRK06834 hypothetical protein; Provisional
Probab=99.36 E-value=2.1e-11 Score=122.77 Aligned_cols=68 Identities=22% Similarity=0.400 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCC
Q psy7710 204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLE 272 (473)
Q Consensus 204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~ 272 (473)
..+.+.|.+.+++.|++|+++++|+++..+++++.+++.+|.+++||+||.|.|.+| .+.+.+|++..
T Consensus 100 ~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S-~vR~~lgi~~~ 167 (488)
T PRK06834 100 NHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRS-LVRKAAGIDFP 167 (488)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCC-CcHhhcCCCCC
Confidence 557777888888889999999999999998888888887777899999999999998 57888887753
No 66
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.35 E-value=3.3e-11 Score=123.91 Aligned_cols=188 Identities=13% Similarity=0.122 Sum_probs=98.0
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeecc-CCC-chhHHHHHHHhHHHHHHHH
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIY-YKP-GTLKAKLCVEGMNLAYEYF 133 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~ 133 (473)
.++||+|||+|++|++||++++++++|.+|+||||.. +.++.|..+.|.+..... ..+ +... ... .+..
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~-~~gg~s~~a~GGi~a~~~~~~~~ds~e-~~~-------~d~~ 72 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTH-PIRSHSVAAQGGIAASLKNVDPEDSWE-AHA-------FDTV 72 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccC-CCchhhHHhccchhhhccCCCCCCCHH-HHH-------HHHH
Confidence 3579999999999999999999885568999999984 433334333333322211 111 1111 100 0110
Q ss_pred HhcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHH-hhcCCcccceeEecCCccceeHHHHHHHHHH
Q psy7710 134 DKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIK-TIEPYCKGVKAIHSPNTGIVDWGLVTRVMGE 212 (473)
Q Consensus 134 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~ 212 (473)
.......++ ..+.. -.+...+.+.++.++|+ .+...+...+. ..+.........+ +.+ .....++..|.+
T Consensus 73 ~~~~~l~d~-~~v~~----l~~~a~~~i~~L~~~Gv-~f~~~~~g~~~~~~~gg~~~~r~~~-~~~--~tG~~i~~~L~~ 143 (575)
T PRK05945 73 KGSDYLADQ-DAVAI----LTQEAPDVIIDLEHLGV-LFSRLPDGRIAQRAFGGHSHNRTCY-AAD--KTGHAILHELVN 143 (575)
T ss_pred HHhCCCCCH-HHHHH----HHHHHHHHHHHHHHcCC-ceEECCCCcEeeccccccccCeeEe-cCC--CChHHHHHHHHH
Confidence 000000000 00000 01122333444555665 23221111000 0000000000111 111 123568888999
Q ss_pred HHHHcCcEEEeCceEEEEEEcCCeEE-E---EcCCC--cEEEcCEEEEcCCcChH
Q psy7710 213 EFCELGGEIRLNQQVESFKENPESVT-I---STKQG--DHLESSYALVCAGLQAD 261 (473)
Q Consensus 213 ~~~~~Gv~i~~~~~V~~i~~~~~~v~-v---~~~~g--~~i~ad~VV~aaG~~s~ 261 (473)
.+++.|+++++++.|+++..+++.+. + ...++ ..+.|+.||+|||+++.
T Consensus 144 ~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~ 198 (575)
T PRK05945 144 NLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGR 198 (575)
T ss_pred HHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcC
Confidence 89889999999999999987665432 2 33455 35899999999999863
No 67
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.35 E-value=4.4e-11 Score=117.45 Aligned_cols=67 Identities=18% Similarity=0.297 Sum_probs=58.1
Q ss_pred eeHHHHHHHHHHHHHHcC-cEEEeCceEEEEEEcCCeEEEEcC-CCcEEEcCEEEEcCCcChHHHHHhcC
Q psy7710 201 VDWGLVTRVMGEEFCELG-GEIRLNQQVESFKENPESVTISTK-QGDHLESSYALVCAGLQADEMALKSG 268 (473)
Q Consensus 201 ~~~~~~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~v~v~~~-~g~~i~ad~VV~aaG~~s~~l~~~~g 268 (473)
+.-..+...|.+.+.+.+ ++++++++|+.+..+++.+.++.+ +|++++||.||-|.|.+| .+.+.++
T Consensus 101 ~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S-~vR~~~~ 169 (387)
T COG0654 101 VPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANS-AVRRAAG 169 (387)
T ss_pred eEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCch-HHHHhcC
Confidence 445678889999998776 899999999999999888877777 888899999999999998 6778777
No 68
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.35 E-value=3.1e-11 Score=124.98 Aligned_cols=194 Identities=11% Similarity=0.101 Sum_probs=97.5
Q ss_pred CCCCCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccC--CCchhHHHHHHHhHHHH
Q psy7710 52 SQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYY--KPGTLKAKLCVEGMNLA 129 (473)
Q Consensus 52 ~~~~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~ 129 (473)
.....++||+|||+|.+|+++|+.+++. |.+|+||||...+++++|..+.|.+...... ..++. . ..+
T Consensus 30 ~~~~~~~DVlVVG~G~AGl~AAi~Aae~--G~~VilieK~~~~~~g~s~~a~GGi~a~~~~~~~~Ds~-~-------~~~ 99 (640)
T PRK07573 30 PANKRKFDVIVVGTGLAGASAAATLGEL--GYNVKVFCYQDSPRRAHSIAAQGGINAAKNYQNDGDSV-Y-------RLF 99 (640)
T ss_pred CccccccCEEEECccHHHHHHHHHHHHc--CCcEEEEecCCCCCcchhHHhhhchHhHhhccccCCCH-H-------HHH
Confidence 3334578999999999999999999999 9999999987556555554444433211110 00111 0 011
Q ss_pred HHHHHhcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHH-hhcCCcccceeEecCC-ccceeHHHHH
Q psy7710 130 YEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIK-TIEPYCKGVKAIHSPN-TGIVDWGLVT 207 (473)
Q Consensus 130 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~-~~~p~~~~~~~~~~~~-~~~~~~~~~~ 207 (473)
.+..+.-....+. ..+.. -.+...+.++++.++|+ .+..-....+. ..+.........+... .|..-...+.
T Consensus 100 ~d~~~~g~~~~d~-~lv~~----l~~~s~~~i~wL~~~GV-~f~~~~~g~~~~~~~gghs~~R~~~~~~~tG~~i~~~l~ 173 (640)
T PRK07573 100 YDTVKGGDFRARE-ANVYR----LAEVSVNIIDQCVAQGV-PFAREYGGLLANRSFGGAQVSRTFYARGQTGQQLLLGAY 173 (640)
T ss_pred HHHHHhcCCCCCH-HHHHH----HHHHHHHHHHHHHhcCC-ccccCCCCceeccccCCcccceeEeCCCCCchhHHHHHH
Confidence 1111100000000 00000 01122344455555665 22210000000 0000000001111110 1110012233
Q ss_pred HHHHHHHHHcCcEEEeCceEEEEEEcCCeEE-EEc---CCC--cEEEcCEEEEcCCcChH
Q psy7710 208 RVMGEEFCELGGEIRLNQQVESFKENPESVT-IST---KQG--DHLESSYALVCAGLQAD 261 (473)
Q Consensus 208 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~-v~~---~~g--~~i~ad~VV~aaG~~s~ 261 (473)
+.|.+.+++.|++|++++.|++|..+++.+. |.. .+| ..+.|+.||+|||+++.
T Consensus 174 ~~L~~~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~ 233 (640)
T PRK07573 174 QALSRQIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYGN 233 (640)
T ss_pred HHHHHHHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCccc
Confidence 5666778888999999999999987665543 332 244 35889999999999763
No 69
>PRK07190 hypothetical protein; Provisional
Probab=99.34 E-value=2e-11 Score=122.64 Aligned_cols=67 Identities=15% Similarity=0.310 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCC
Q psy7710 204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSL 271 (473)
Q Consensus 204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~ 271 (473)
..+.+.|.+.+++.|++++++++|+++..+++++.+.+.+|++++|++||.|+|..| .+.+.+|++.
T Consensus 109 ~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S-~vR~~lgi~f 175 (487)
T PRK07190 109 SYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRS-FVRNHFNVPF 175 (487)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCH-HHHHHcCCCc
Confidence 445667777888899999999999999998888877777777899999999999997 6778888764
No 70
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.33 E-value=1.1e-10 Score=114.67 Aligned_cols=77 Identities=25% Similarity=0.246 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh----------HHHHHhcCCCCC
Q psy7710 203 WGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA----------DEMALKSGCSLE 272 (473)
Q Consensus 203 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s----------~~l~~~~g~~~~ 272 (473)
...+.+.+.+.+++.|++++++++|+++..+++.+.|++++ .++.+|.||+|+|.++ -.+++.+|+.+.
T Consensus 104 a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~~~-~~i~ad~VIlAtG~~s~p~~gs~G~g~~la~~lG~~i~ 182 (400)
T TIGR00275 104 AADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVETSG-GEYEADKVILATGGLSYPQLGSTGDGYEIAESLGHTIV 182 (400)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEECC-cEEEcCEEEECCCCcccCCCCCCcHHHHHHHHCCCCEe
Confidence 35688889999999999999999999998877778887754 4899999999999865 578888987642
Q ss_pred CceeeeeeE
Q psy7710 273 PAIVPFRGE 281 (473)
Q Consensus 273 ~~~~p~~g~ 281 (473)
+..|..-+
T Consensus 183 -~~~P~l~~ 190 (400)
T TIGR00275 183 -PPVPALVP 190 (400)
T ss_pred -cccceEeE
Confidence 34554333
No 71
>PRK08013 oxidoreductase; Provisional
Probab=99.33 E-value=2.6e-11 Score=119.70 Aligned_cols=70 Identities=9% Similarity=0.107 Sum_probs=59.6
Q ss_pred eeHHHHHHHHHHHHHHc-CcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCC
Q psy7710 201 VDWGLVTRVMGEEFCEL-GGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSL 271 (473)
Q Consensus 201 ~~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~ 271 (473)
+.-..+.+.|.+.+.+. |++++++++|+++..+++.+.|+..+|.+++||.||-|.|.+| .+.+.+|++.
T Consensus 108 i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S-~vR~~~~~~~ 178 (400)
T PRK08013 108 IENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANS-WLRNKADIPL 178 (400)
T ss_pred EEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCc-HHHHHcCCCc
Confidence 45566788888888775 8999999999999988888888888888899999999999998 6778888764
No 72
>PRK10015 oxidoreductase; Provisional
Probab=99.32 E-value=2e-11 Score=121.04 Aligned_cols=68 Identities=16% Similarity=0.224 Sum_probs=54.6
Q ss_pred eeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEE-EEcCCCcEEEcCEEEEcCCcChHHHHHhcCCC
Q psy7710 201 VDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVT-ISTKQGDHLESSYALVCAGLQADEMALKSGCS 270 (473)
Q Consensus 201 ~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~-v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~ 270 (473)
+.-..+-+.|.+.+++.|++++.+++|+++..+++.+. +.+.+ .+++||.||.|+|..+ .+.+.+|+.
T Consensus 105 v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~-~~i~A~~VI~AdG~~s-~v~~~lg~~ 173 (429)
T PRK10015 105 VLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGD-DILEANVVILADGVNS-MLGRSLGMV 173 (429)
T ss_pred eehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCC-eEEECCEEEEccCcch-hhhcccCCC
Confidence 44566778899999999999999999999987766654 55544 4899999999999987 577777764
No 73
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.32 E-value=8.4e-11 Score=121.36 Aligned_cols=185 Identities=12% Similarity=0.043 Sum_probs=99.5
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccC-CCchhHHHHHHHhHHHHHHHHH
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYY-KPGTLKAKLCVEGMNLAYEYFD 134 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 134 (473)
.++||+|||+|.+|+++|+.+++. |.+|+||||.. +.+++|..+.|.+...... ..+.... . +.+..+
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~--G~~V~lveK~~-~~~g~t~~a~Ggi~a~~~~~~~Ds~e~-~-------~~D~~~ 96 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVEL--GYKTACISKLF-PTRSHTVAAQGGINAALGNMTEDDWRW-H-------AYDTVK 96 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHc--CCcEEEEeccC-CCCCCchhhcCCeeEEecCCCCCCHHH-H-------HHHHHH
Confidence 568999999999999999999999 99999999984 5555555555544332111 1111100 0 001100
Q ss_pred hcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHH-hhcCCcc--------cceeEecCCccceeHHH
Q psy7710 135 KRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIK-TIEPYCK--------GVKAIHSPNTGIVDWGL 205 (473)
Q Consensus 135 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~-~~~p~~~--------~~~~~~~~~~~~~~~~~ 205 (473)
.-. .......+.. -.+...+.++++.++|+ .+.......+. ..+.... .....+. . --....
T Consensus 97 ~g~-~~~d~~lv~~----l~~~s~~~i~~L~~~Gv-~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~-~--d~tG~~ 167 (617)
T PTZ00139 97 GSD-WLGDQDAIQY----MCREAPQAVLELESYGL-PFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAA-A--DRTGHA 167 (617)
T ss_pred HhC-CCCCHHHHHH----HHHHHHHHHHHHHhcCC-ceEeCCCCcEeecccCcccccccCCCccceeeec-C--CCcHHH
Confidence 000 0000000000 01223344455555665 33221000000 0000000 0000010 0 012357
Q ss_pred HHHHHHHHHHHcCcEEEeCceEEEEEE-cCCeEE-E---EcCCC--cEEEcCEEEEcCCcCh
Q psy7710 206 VTRVMGEEFCELGGEIRLNQQVESFKE-NPESVT-I---STKQG--DHLESSYALVCAGLQA 260 (473)
Q Consensus 206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~-~~~~v~-v---~~~~g--~~i~ad~VV~aaG~~s 260 (473)
+...|.+.+++.|+++++++.++++.. +++.+. | ...+| ..+.|+.||+|||++.
T Consensus 168 i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 229 (617)
T PTZ00139 168 MLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYG 229 (617)
T ss_pred HHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCc
Confidence 888999999999999999999999987 455442 3 23455 3678999999999985
No 74
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.31 E-value=7.1e-11 Score=117.50 Aligned_cols=67 Identities=12% Similarity=0.138 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHc-CcEEEeCceEEEEEEcCCeEEEEcCC--C-cEEEcCEEEEcCCcChHHHHHhcCCC
Q psy7710 203 WGLVTRVMGEEFCEL-GGEIRLNQQVESFKENPESVTISTKQ--G-DHLESSYALVCAGLQADEMALKSGCS 270 (473)
Q Consensus 203 ~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~v~v~~~~--g-~~i~ad~VV~aaG~~s~~l~~~~g~~ 270 (473)
...+.+.|.+.+.+. |++++++++|+++..+++.+.|++.+ + .+++||.||.|.|.+| .+.+.+++.
T Consensus 120 ~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG~~S-~vR~~~~~~ 190 (415)
T PRK07364 120 HQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGARS-PIRQAAGIK 190 (415)
T ss_pred cHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEeCCCCc-hhHHHhCCC
Confidence 345777788877764 79999999999998888777776542 2 3699999999999998 567777765
No 75
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.31 E-value=7.1e-11 Score=117.14 Aligned_cols=181 Identities=17% Similarity=0.139 Sum_probs=93.0
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHh
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDK 135 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (473)
.++||+|||+|.+|+++|+.++ . |.+|+||||.+. .++.|..+.|.+.... ..+.. .. .+.+..+.
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~--G~~V~lleK~~~-~gg~s~~a~ggi~~~~--~~d~~-~~-------~~~d~~~~ 68 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-K--DLKILMVSKGKL-NECNTYLAQGGISVAR--NKDDI-TS-------FVEDTLKA 68 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-c--CCCEEEEecCCC-CCCchHHHhHhheeCC--CCCCH-HH-------HHHHHHHH
Confidence 4689999999999999999974 6 899999999854 4444444444333211 11111 00 11111100
Q ss_pred cCCCCcccC-eEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHH
Q psy7710 136 RNIPYKKCG-KLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEF 214 (473)
Q Consensus 136 ~~~~~~~~g-~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 214 (473)
-. +..+. .+.. -.+...+.++++..+|+ .+..-............ ...-.+.+. ......+...|.+.+
T Consensus 69 g~--~~~d~~lv~~----~~~~s~e~i~wL~~~Gv-~f~~~~~~~~~~~~g~~-~~~r~~~~~--~~~g~~l~~~L~~~~ 138 (433)
T PRK06175 69 GQ--YENNLEAVKI----LANESIENINKLIDMGL-NFDKDEKELSYTKEGAH-SVNRIVHFK--DNTGKKVEKILLKKV 138 (433)
T ss_pred hC--CCCCHHHHHH----HHHHHHHHHHHHHHcCC-ccccCCCceeeeccCcc-ccCeEEecC--CCChHHHHHHHHHHH
Confidence 00 00000 0000 01122334445555555 22211000000000000 000111111 112356788888888
Q ss_pred HH-cCcEEEeCceEEEEEEcCCeE-EEE-cCCCc--EEEcCEEEEcCCcCh
Q psy7710 215 CE-LGGEIRLNQQVESFKENPESV-TIS-TKQGD--HLESSYALVCAGLQA 260 (473)
Q Consensus 215 ~~-~Gv~i~~~~~V~~i~~~~~~v-~v~-~~~g~--~i~ad~VV~aaG~~s 260 (473)
++ .|++|+++++|++|..+++.+ .|. +.++. .+.|+.||+|||+++
T Consensus 139 ~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~ 189 (433)
T PRK06175 139 KKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGGIG 189 (433)
T ss_pred HhcCCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCccc
Confidence 75 599999999999998766543 222 22332 589999999999865
No 76
>PRK09126 hypothetical protein; Provisional
Probab=99.30 E-value=1.1e-10 Score=115.09 Aligned_cols=69 Identities=13% Similarity=0.172 Sum_probs=55.7
Q ss_pred eHHHHHHHHHHHHH-HcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCC
Q psy7710 202 DWGLVTRVMGEEFC-ELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSL 271 (473)
Q Consensus 202 ~~~~~~~~l~~~~~-~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~ 271 (473)
....+.+.|.+.+. ..|++++++++|+++..+++.+.|++++|.+++||.||.|.|.+| .+.+.+|++.
T Consensus 108 ~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S-~vr~~~g~~~ 177 (392)
T PRK09126 108 PNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFS-ATRRQLGIGA 177 (392)
T ss_pred eHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCc-hhhHhcCCCc
Confidence 33456666777664 469999999999999988888888888888899999999999988 5777777653
No 77
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.30 E-value=1.8e-11 Score=109.01 Aligned_cols=59 Identities=24% Similarity=0.339 Sum_probs=46.4
Q ss_pred eHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710 202 DWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA 260 (473)
Q Consensus 202 ~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s 260 (473)
....+.+.+.+.+++.+++++++++|+++..++++|.|++.++.+++||.||+|+|.++
T Consensus 80 ~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~ 138 (203)
T PF13738_consen 80 SGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYS 138 (203)
T ss_dssp BHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSC
T ss_pred CHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccC
Confidence 34557777888888899999999999999999988999999987899999999999874
No 78
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.30 E-value=6e-10 Score=110.11 Aligned_cols=70 Identities=14% Similarity=0.183 Sum_probs=57.0
Q ss_pred eeHHHHHHHHHHHHHH-cCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCC
Q psy7710 201 VDWGLVTRVMGEEFCE-LGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSL 271 (473)
Q Consensus 201 ~~~~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~ 271 (473)
++...+.+.|.+.+.+ .|++++++++|+++..+++++.|++.+|..+++|.||.|+|.+|. +.+.++++.
T Consensus 109 ~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~-vr~~~~~~~ 179 (395)
T PRK05732 109 VELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHSA-LREALGIDW 179 (395)
T ss_pred EEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCChh-hHHhhCCCc
Confidence 3334566777777765 489999999999999888888888888878999999999999984 778887654
No 79
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.29 E-value=1.8e-10 Score=118.69 Aligned_cols=183 Identities=13% Similarity=0.074 Sum_probs=95.9
Q ss_pred cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeecc-CCCchhHHHHHHHhHHHHHHHHHhcC
Q psy7710 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIY-YKPGTLKAKLCVEGMNLAYEYFDKRN 137 (473)
Q Consensus 59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (473)
||+|||+|++|+++|+.++++ |.+|+||||.. ..++.|..+.|.+..... ..+......+. .+......
T Consensus 1 DVlVVG~G~AGl~AA~~aae~--G~~V~lleK~~-~~~g~s~~a~Gg~~~~~~~~~~~d~~e~~~-------~d~~~~~~ 70 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKA--GLNTAVISKVY-PTRSHTVAAQGGMAAALGNVDPDDSWEWHA-------YDTVKGSD 70 (566)
T ss_pred CEEEECccHHHHHHHHHHHHC--CCcEEEEeccC-CCCCcchhhccCeEeecCCCCCCccHHHHH-------HHHHHHhC
Confidence 799999999999999999999 99999999985 444444444443332221 11111100000 00000000
Q ss_pred CCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHh-hcCCcccceeEecCCccceeHHHHHHHHHHHHHH
Q psy7710 138 IPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKT-IEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCE 216 (473)
Q Consensus 138 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 216 (473)
...++ ..+.. -.+...+.++++.++|+ .+.......... .+.........+.. ......+...|.+.+++
T Consensus 71 ~~~d~-~~v~~----~~~~s~~~i~~L~~~Gv-~f~~~~~g~~~~~~~gg~~~~r~~~~~---~~~G~~i~~~L~~~~~~ 141 (566)
T TIGR01812 71 YLADQ-DAVEY----MCQEAPKAILELEHWGV-PFSRTPDGRIAQRPFGGHSKDRTCYAA---DKTGHALLHTLYEQCLK 141 (566)
T ss_pred CCCCH-HHHHH----HHHHHHHHHHHHHHcCC-cceecCCCcEeeccccccccCeeEECC---CCCHHHHHHHHHHHHHH
Confidence 00000 00000 01112233445555665 222111100000 00000000111111 11234677888888888
Q ss_pred cCcEEEeCceEEEEEEcCCeEE-E---EcCCCc--EEEcCEEEEcCCcCh
Q psy7710 217 LGGEIRLNQQVESFKENPESVT-I---STKQGD--HLESSYALVCAGLQA 260 (473)
Q Consensus 217 ~Gv~i~~~~~V~~i~~~~~~v~-v---~~~~g~--~i~ad~VV~aaG~~s 260 (473)
.|+++++++.|++|..+++.+. | ...+|. .+.|+.||+|+|+++
T Consensus 142 ~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~ 191 (566)
T TIGR01812 142 LGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG 191 (566)
T ss_pred cCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence 8999999999999987766543 2 234553 589999999999986
No 80
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.29 E-value=2.6e-11 Score=121.97 Aligned_cols=64 Identities=25% Similarity=0.397 Sum_probs=53.9
Q ss_pred eEecCCccceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCC-eEEEEcCCCcEEEcCEEEEcCCc
Q psy7710 192 AIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPE-SVTISTKQGDHLESSYALVCAGL 258 (473)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~-~v~v~~~~g~~i~ad~VV~aaG~ 258 (473)
+++.|.+|. ..++++|.+.++++|++|+++++|++|..+++ ++++.+.+|..+++|.||.+...
T Consensus 215 G~~~p~GG~---~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 215 GVFYPRGGM---GALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred CeeeeeCCH---HHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch
Confidence 455555554 78999999999999999999999999998775 57788888767899999998877
No 81
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.29 E-value=1.4e-10 Score=117.15 Aligned_cols=183 Identities=11% Similarity=0.043 Sum_probs=99.1
Q ss_pred cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHhc
Q psy7710 57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDKR 136 (473)
Q Consensus 57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (473)
++||+|||+|++|+++|+.+++. |. |+||||.+ ..+++|..+.|.+..... ..++.. . .+.++.+..
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~--G~-V~lleK~~-~~~g~s~~a~Ggi~~~~~-~~ds~e-~-------~~~d~~~~~ 68 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQ--GR-VIVLSKAP-VTEGNSFYAQGGIAAVLA-ETDSID-S-------HVEDTLAAG 68 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhC--CC-EEEEEccC-CCCCcchhcCcCeeeeec-CCCCHH-H-------HHHHHHHhc
Confidence 47999999999999999999998 87 99999984 555555555554443221 111110 0 111111100
Q ss_pred CCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHH-hhcCCcccceeEecCCccceeHHHHHHHHHHHHH
Q psy7710 137 NIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIK-TIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFC 215 (473)
Q Consensus 137 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 215 (473)
. .......+. .-.+...+.++++..+|+ .+......... ...... ...-++.. +......+...|.+.++
T Consensus 69 ~-~~~d~~~v~----~~~~~~~~~i~~L~~~Gv-~f~~~~~g~~~~~~~gg~-~~~r~~~~--~~~~G~~l~~~L~~~~~ 139 (488)
T TIGR00551 69 A-GICDREAVE----FVVSDARSAVQWLVDQGV-LFDRHEQGSYALTREGGH-SYRRILHA--ADATGREVITTLVKKAL 139 (488)
T ss_pred C-CcCCHHHHH----HHHHhHHHHHHHHHHcCC-cceeCCCCCccccCCCCc-CCCeEEEe--CCCCHHHHHHHHHHHHH
Confidence 0 000000000 001222344555666665 22211100000 000000 00011111 11234678888999888
Q ss_pred H-cCcEEEeCceEEEEEEcCCeEE-EEc--CCC-cEEEcCEEEEcCCcChH
Q psy7710 216 E-LGGEIRLNQQVESFKENPESVT-IST--KQG-DHLESSYALVCAGLQAD 261 (473)
Q Consensus 216 ~-~Gv~i~~~~~V~~i~~~~~~v~-v~~--~~g-~~i~ad~VV~aaG~~s~ 261 (473)
+ .|++|++++.|++|..+++.+. |.. .++ ..++|+.||+|+|+++.
T Consensus 140 ~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 140 NHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAGK 190 (488)
T ss_pred hcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence 7 6999999999999987665443 333 222 36899999999999974
No 82
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.28 E-value=1.3e-10 Score=119.27 Aligned_cols=182 Identities=10% Similarity=-0.021 Sum_probs=98.1
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHh
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDK 135 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (473)
.++||+|||+|++|+++|+.+++.++|.+|+|+||.. +.+++|..+.|.+..... ..++. ..+ +.+..+.
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~-~~~g~s~~a~Gg~~~~~~-~~ds~-e~~-------~~d~~~~ 72 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVY-PMRSHTVAAEGGSAAVAQ-DHDSF-DYH-------FHDTVAG 72 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccC-CCCCChhhccchhhhhcC-CCCCH-HHH-------HHHHHHh
Confidence 4689999999999999999999885568999999984 444555555443332111 11111 000 0111000
Q ss_pred cCCCCcccCeEEEEeCc-----ChhhHHHHHHHHHhCCCCcceeeCHHHHH-hhcCCcccceeEecCCccceeHHHHHHH
Q psy7710 136 RNIPYKKCGKLIVALNE-----QLEPLHDLYERSIQNNVKDVRLVSAEEIK-TIEPYCKGVKAIHSPNTGIVDWGLVTRV 209 (473)
Q Consensus 136 ~~~~~~~~g~l~~~~~~-----~~~~~~~~~~~~~~~g~~~~~~l~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 209 (473)
+ .+. .++ -.+...+.++++.++|+ .+..-....+. ..+....... .+...+ -....+...
T Consensus 73 -g-~~~--------~d~~~v~~~~~~s~~~i~~L~~~Gv-~f~~~~~g~~~~~~~gg~~~~r-~~~~~~--~~G~~i~~~ 138 (582)
T PRK09231 73 -G-DWL--------CEQDVVEYFVHHCPTEMTQLEQWGC-PWSRKPDGSVNVRRFGGMKIER-TWFAAD--KTGFHMLHT 138 (582)
T ss_pred -c-ccC--------CCHHHHHHHHHHHHHHHHHHHHcCC-CcccCCCCceeeeccccccCCe-eEecCC--CcHHHHHHH
Confidence 0 000 000 01222344455566666 22211000000 0000000000 111111 013457777
Q ss_pred HHHHHHHc-CcEEEeCceEEEEEEcCCeEE----EEcCCC--cEEEcCEEEEcCCcChH
Q psy7710 210 MGEEFCEL-GGEIRLNQQVESFKENPESVT----ISTKQG--DHLESSYALVCAGLQAD 261 (473)
Q Consensus 210 l~~~~~~~-Gv~i~~~~~V~~i~~~~~~v~----v~~~~g--~~i~ad~VV~aaG~~s~ 261 (473)
|.+.+.+. |++++.++.|+++..+++.+. +...+| ..+.|+.||+|+|+++.
T Consensus 139 L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 197 (582)
T PRK09231 139 LFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGR 197 (582)
T ss_pred HHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcC
Confidence 87777664 899999999999997766543 233455 36889999999999873
No 83
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.28 E-value=1.7e-10 Score=118.28 Aligned_cols=185 Identities=14% Similarity=0.057 Sum_probs=96.9
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeecc--CCCchhHHHHHHHhHHHHHHHH
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIY--YKPGTLKAKLCVEGMNLAYEYF 133 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 133 (473)
.++||+|||+|.+|+++|+.+++. |.+|+||||.+ ..++.|..+.|.+..... ..+......+. .+..
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~--G~~V~lveK~~-~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~-------~d~~ 73 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASA--GFKVAVISKVF-PTRSHSAAAEGGIAAYIPGNSDPNDNPDYMT-------YDTV 73 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHC--CCcEEEEEccC-CCCCcchhhccchhhhccccCCCcccHHHHH-------HHHH
Confidence 468999999999999999999999 99999999985 444444444443321110 01111000010 0000
Q ss_pred HhcCCCCcccCeEEEEeCc-ChhhHHHHHHHHHhCCCCcceeeCHHHH-HhhcCCcccceeEecCCccceeHHHHHHHHH
Q psy7710 134 DKRNIPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVSAEEI-KTIEPYCKGVKAIHSPNTGIVDWGLVTRVMG 211 (473)
Q Consensus 134 ~~~~~~~~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~ 211 (473)
.. +- +..+..+ -. -.+...+.++++..+|+ .+..-....+ ...+.........+.. .-....++..|.
T Consensus 74 ~~-g~-~~~d~~~----v~~~~~~s~~~i~~L~~~Gv-~f~~~~~g~~~~~~~gg~~~~r~~~~~---~~~G~~i~~~L~ 143 (566)
T PRK06452 74 KG-GD-YLVDQDA----AELLSNKSGEIVMLLERWGA-LFNRQPDGRVAVRYFGGQTYPRTRFVG---DKTGMALLHTLF 143 (566)
T ss_pred Hh-hc-cCCCHHH----HHHHHHHHHHHHHHHHHCCC-ccccCCCCcEeccCCcCccCCeeEecC---CCCHHHHHHHHH
Confidence 00 00 0000000 00 01222334445555665 2221100000 0000000000111111 012356788888
Q ss_pred HHHHHcCcEEEeCceEEEEEEcCCeEE-EE--c-CCC--cEEEcCEEEEcCCcCh
Q psy7710 212 EEFCELGGEIRLNQQVESFKENPESVT-IS--T-KQG--DHLESSYALVCAGLQA 260 (473)
Q Consensus 212 ~~~~~~Gv~i~~~~~V~~i~~~~~~v~-v~--~-~~g--~~i~ad~VV~aaG~~s 260 (473)
+.+.+.|+++++++.++++..+++.+. |. . .++ ..+.|+.||+|||+++
T Consensus 144 ~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 144 ERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred HHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 888888999999999999998766543 33 2 233 3578999999999886
No 84
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.28 E-value=3.5e-11 Score=120.73 Aligned_cols=152 Identities=19% Similarity=0.243 Sum_probs=91.7
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC-cccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHH
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK-ELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFD 134 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~-~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (473)
.++||+|||||++|+.+|+.+++. |.+|+++|+.. .+|.-+...+.|.+.. ..+..++ .
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~--G~kV~LiE~~~d~iG~m~CnpsiGG~ak------g~lvrEi------------d 62 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARM--GAKTLLLTHNLDTIGQMSCNPAIGGIAK------GHLVREI------------D 62 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHc--CCcEEEEecccccccccCCccccccchh------hHHHHHH------------H
Confidence 469999999999999999999999 99999999873 3442111111111110 0000000 0
Q ss_pred hcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHH
Q psy7710 135 KRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEF 214 (473)
Q Consensus 135 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 214 (473)
.++- .+. ......++ ....++... -.+++.+. +.+|...+...+.+.+
T Consensus 63 alGg-----------------~~g---~~~d~~gi-q~r~ln~sk----------GpAV~s~R-aQiDr~ly~kaL~e~L 110 (618)
T PRK05192 63 ALGG-----------------EMG---KAIDKTGI-QFRMLNTSK----------GPAVRALR-AQADRKLYRAAMREIL 110 (618)
T ss_pred hcCC-----------------HHH---HHHhhccC-ceeecccCC----------CCceeCcH-HhcCHHHHHHHHHHHH
Confidence 0000 000 00111111 111111100 01233332 3678888999999888
Q ss_pred HHc-CcEEEeCceEEEEEEcCCeE-EEEcCCCcEEEcCEEEEcCCcCh
Q psy7710 215 CEL-GGEIRLNQQVESFKENPESV-TISTKQGDHLESSYALVCAGLQA 260 (473)
Q Consensus 215 ~~~-Gv~i~~~~~V~~i~~~~~~v-~v~~~~g~~i~ad~VV~aaG~~s 260 (473)
.+. |++++ +..|.++..+++.+ .|.+.+|..+.|+.||+|+|.|+
T Consensus 111 ~~~~nV~I~-q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTFL 157 (618)
T PRK05192 111 ENQPNLDLF-QGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTFL 157 (618)
T ss_pred HcCCCcEEE-EeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcch
Confidence 865 78885 67799988776665 48888888999999999999764
No 85
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.27 E-value=2.8e-10 Score=117.35 Aligned_cols=178 Identities=11% Similarity=0.026 Sum_probs=98.6
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccC-CCchhHHHHHHHh---------
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYY-KPGTLKAKLCVEG--------- 125 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~-~~~~~~~~~~~~~--------- 125 (473)
.++||+|||+|++|+++|+.+++. |.+|+||||.. +.+++|..+.|.+...... ..+... ....+.
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~--G~~V~lveK~~-~~~g~s~~a~Ggi~a~~~~~~~Ds~e-~~~~d~~~~g~~~~d 86 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEA--GLKTACITKVF-PTRSHTVAAQGGISASLGNMGEDDWR-WHMYDTVKGSDWLGD 86 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHc--CCcEEEEEccC-CCCcchhhhcCCcccccCCCCCCCHH-HHHHHHHHhccCCCC
Confidence 468999999999999999999999 89999999984 4445555554444322111 111110 000000
Q ss_pred HHHHHHHHHhcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHH-hhcCCcc-------cceeEecCC
Q psy7710 126 MNLAYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIK-TIEPYCK-------GVKAIHSPN 197 (473)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~-~~~p~~~-------~~~~~~~~~ 197 (473)
.+.++.+ .+...+.++++.++|+ .+......... ..+.... ...-.+...
T Consensus 87 ~~lv~~l---------------------~~~s~~~i~~L~~~Gv-~f~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~ 144 (598)
T PRK09078 87 QDAIEYM---------------------CREAPAAVYELEHYGV-PFSRTEEGKIYQRPFGGMTTNYGKGPPAQRTCAAA 144 (598)
T ss_pred HHHHHHH---------------------HHHHHHHHHHHHHcCC-cceecCCCceeecccCceecccCCCCccceeEecC
Confidence 0011111 1222333444555565 22211100000 0000000 000000010
Q ss_pred ccceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcC-CeEE-EE---cCCC--cEEEcCEEEEcCCcChH
Q psy7710 198 TGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENP-ESVT-IS---TKQG--DHLESSYALVCAGLQAD 261 (473)
Q Consensus 198 ~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~-~~v~-v~---~~~g--~~i~ad~VV~aaG~~s~ 261 (473)
+ .....++..|.+.+++.|+++++++.|++|..++ +.+. |. ..+| ..+.|+.||+|||++..
T Consensus 145 d--~tG~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 213 (598)
T PRK09078 145 D--RTGHAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGR 213 (598)
T ss_pred C--CCHHHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcc
Confidence 0 1235688889998988999999999999998765 4332 32 3455 36789999999999864
No 86
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.27 E-value=2.6e-10 Score=117.34 Aligned_cols=67 Identities=15% Similarity=0.159 Sum_probs=52.3
Q ss_pred ccceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeE---EEEcCCC-cEEEc-CEEEEcCCcChHHHH
Q psy7710 198 TGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESV---TISTKQG-DHLES-SYALVCAGLQADEMA 264 (473)
Q Consensus 198 ~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v---~v~~~~g-~~i~a-d~VV~aaG~~s~~l~ 264 (473)
...+++..++..|.+.+++.|++|+++++|++|..+++.+ .+++.++ ..++| +.||+|+|+|+.++.
T Consensus 211 ~~~~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~~ 282 (581)
T PRK06134 211 MHLVNGNALVARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFPHDPA 282 (581)
T ss_pred CcccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCcccCHH
Confidence 3446778899999999999999999999999998766544 2333444 25788 999999999975443
No 87
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.27 E-value=3.6e-10 Score=111.91 Aligned_cols=68 Identities=9% Similarity=0.092 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHH-cCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCC
Q psy7710 203 WGLVTRVMGEEFCE-LGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSL 271 (473)
Q Consensus 203 ~~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~ 271 (473)
-..+.+.|.+.+.+ .|++++++++|+++..+++.+.|++.+|++++||.||.|.|.+| .+.+.+|++.
T Consensus 110 ~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S-~vR~~~~~~~ 178 (405)
T PRK08850 110 NRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANS-WLRRQMDIPL 178 (405)
T ss_pred HHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCC-hhHHHcCCCe
Confidence 34566677777766 47999999999999988888888888888899999999999997 6777787763
No 88
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.27 E-value=2.4e-10 Score=117.13 Aligned_cols=180 Identities=11% Similarity=-0.038 Sum_probs=98.4
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeecc--CCCchhHHHHHHHh-----HHH
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIY--YKPGTLKAKLCVEG-----MNL 128 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~--~~~~~~~~~~~~~~-----~~~ 128 (473)
.++||+|||+|++|+++|+.++++++|.+|+|+||.. ..++.+..+.|.+..... ..++.+.......+ .+.
T Consensus 2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~-~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~l 80 (580)
T TIGR01176 2 AQHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVY-PMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDV 80 (580)
T ss_pred cceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccC-CCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHH
Confidence 3589999999999999999999875568999999984 444455444443322111 11111111000000 000
Q ss_pred HHHHHHhcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHH-HhhcCCcccceeEecCCccceeHHHHH
Q psy7710 129 AYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEI-KTIEPYCKGVKAIHSPNTGIVDWGLVT 207 (473)
Q Consensus 129 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~ 207 (473)
.+.+ .+...+.++++.++|+ .+..-+...+ ...+.... ..-.+...+ -....+.
T Consensus 81 v~~l---------------------~~~s~~~i~~L~~~Gv-~f~~~~~g~~~~~~~gg~~-~~R~~~~~~--~~G~~i~ 135 (580)
T TIGR01176 81 VEYF---------------------VAEAPKEMVQLEHWGC-PWSRKPDGRVNVRRFGGMK-KERTWFAAD--KTGFHML 135 (580)
T ss_pred HHHH---------------------HHHhHHHHHHHHHcCC-ccEecCCCceeeeccCCcc-CCeeeecCC--CCHHHHH
Confidence 0011 1222334445555665 2221110000 00000000 000111111 1235678
Q ss_pred HHHHHHHHH-cCcEEEeCceEEEEEEcCCeEE----EEcCCC--cEEEcCEEEEcCCcChH
Q psy7710 208 RVMGEEFCE-LGGEIRLNQQVESFKENPESVT----ISTKQG--DHLESSYALVCAGLQAD 261 (473)
Q Consensus 208 ~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~v~----v~~~~g--~~i~ad~VV~aaG~~s~ 261 (473)
..|.+.+.+ .|++++.++.++++..+++.+. +...+| ..+.|+.||+|||+++.
T Consensus 136 ~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (580)
T TIGR01176 136 HTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAGR 196 (580)
T ss_pred HHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCcc
Confidence 888887776 4899999999999997766543 233455 46889999999999874
No 89
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.26 E-value=2.6e-10 Score=112.73 Aligned_cols=69 Identities=16% Similarity=0.244 Sum_probs=56.5
Q ss_pred ceeHHHHHHHHHHHHHHcC-cEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcC
Q psy7710 200 IVDWGLVTRVMGEEFCELG-GEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSG 268 (473)
Q Consensus 200 ~~~~~~~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g 268 (473)
.++...+.+.|.+.+.+.+ ++++++++|+++..+++++.+++.+|.+++||.||.|.|.+|.......|
T Consensus 105 ~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~~r~~~~g 174 (396)
T PRK08163 105 VIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSVVRQSLVG 174 (396)
T ss_pred EEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcChHHHhhccC
Confidence 3566778888998887765 99999999999998888888888888789999999999999854433334
No 90
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.26 E-value=2.3e-10 Score=117.26 Aligned_cols=69 Identities=16% Similarity=0.393 Sum_probs=54.5
Q ss_pred eHHHHHHHHHHHHHHc-CcEEEeCceEEEEEEcCCeEEEEcC--CC--cEEEcCEEEEcCCcChHHHHHhcCCCC
Q psy7710 202 DWGLVTRVMGEEFCEL-GGEIRLNQQVESFKENPESVTISTK--QG--DHLESSYALVCAGLQADEMALKSGCSL 271 (473)
Q Consensus 202 ~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~v~v~~~--~g--~~i~ad~VV~aaG~~s~~l~~~~g~~~ 271 (473)
+-..+.+.|.+.+.+. |++|+++++|++++.+++++.|+.. +| .+++||+||.|.|.+| .+.+.+|+..
T Consensus 111 ~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S-~vR~~lg~~~ 184 (538)
T PRK06183 111 HQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGCDGANS-FVRRTLGVPF 184 (538)
T ss_pred ChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecCCCch-hHHHHcCCee
Confidence 3345667777777764 9999999999999998888876654 45 4799999999999998 5777777653
No 91
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.26 E-value=3e-10 Score=117.28 Aligned_cols=189 Identities=10% Similarity=0.020 Sum_probs=98.3
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccC-CCchhHHHHHHHhHHHHHHHHH
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYY-KPGTLKAKLCVEGMNLAYEYFD 134 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 134 (473)
.++||+|||+|++|+++|+.++++ |.+|+||||.. +.+++|..+.|.+...... ..++.. ... .+..+
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~--G~~VilveK~~-~~~g~s~~a~Ggi~a~~~~~~~Ds~e-~~~-------~Dt~~ 117 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEH--GFNTACITKLF-PTRSHTVAAQGGINAALGNMTEDDWR-WHM-------YDTVK 117 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhc--CCcEEEEEcCC-CCCCchHHhhcCceeecCCCCCCCHH-HHH-------HHHHH
Confidence 468999999999999999999999 99999999984 5555555554444332111 122211 000 01100
Q ss_pred hcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHH-HhhcCCccc-c--ee-E-ecCCccceeHHHHHH
Q psy7710 135 KRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEI-KTIEPYCKG-V--KA-I-HSPNTGIVDWGLVTR 208 (473)
Q Consensus 135 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~-~~~~p~~~~-~--~~-~-~~~~~~~~~~~~~~~ 208 (473)
.-. .......+.. -.+...+.++++.++|+ .+..-....+ ...+..... . .+ . .....+.-....++.
T Consensus 118 ~g~-~~~d~~lv~~----l~~~s~~~i~~L~~~Gv-~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~ 191 (635)
T PLN00128 118 GSD-WLGDQDAIQY----MCREAPKAVIELENYGL-PFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLH 191 (635)
T ss_pred hhC-CCCCHHHHHH----HHHhHHHHHHHHHhCCC-ccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHH
Confidence 000 0000000000 01222334445555555 2211000000 000000000 0 00 0 000000112356888
Q ss_pred HHHHHHHHcCcEEEeCceEEEEEEc-CCeEE-EE--c-CCC--cEEEcCEEEEcCCcChH
Q psy7710 209 VMGEEFCELGGEIRLNQQVESFKEN-PESVT-IS--T-KQG--DHLESSYALVCAGLQAD 261 (473)
Q Consensus 209 ~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v~-v~--~-~~g--~~i~ad~VV~aaG~~s~ 261 (473)
.|.+.+.+.|++|+.++.+.+|..+ ++.+. |. . .+| ..+.|+.||+|||++..
T Consensus 192 ~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~ 251 (635)
T PLN00128 192 TLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGR 251 (635)
T ss_pred HHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCcc
Confidence 8999888899999999999998875 44432 32 2 345 36789999999999864
No 92
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.26 E-value=2.9e-10 Score=117.70 Aligned_cols=185 Identities=13% Similarity=0.071 Sum_probs=97.4
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccC--CCchhHHHHHHHhHHHHHHHH
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYY--KPGTLKAKLCVEGMNLAYEYF 133 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 133 (473)
.++||+|||+|++|+++|+.+++. |.+|+||||.. +++++|..+.|.+...... ..++... . +.+..
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~--G~~V~lieK~~-~~~g~s~~a~Ggi~a~~~~~~~~ds~~~-~-------~~D~~ 75 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARER--GLRVAVVCKSL-FGKAHTVMAEGGCAAAMGNVNPKDNWQV-H-------FRDTM 75 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHC--CCCEEEEeccC-CCCCcceecCccceeeccCCCCCCCHHH-H-------HHHHH
Confidence 468999999999999999999999 99999999984 6656666665554433211 1111110 0 00100
Q ss_pred HhcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHh-hcCCcccceeEecCCccceeHHHHHHHHHH
Q psy7710 134 DKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKT-IEPYCKGVKAIHSPNTGIVDWGLVTRVMGE 212 (473)
Q Consensus 134 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~ 212 (473)
+.-. .......+.. -.+...+.+.++.++|+ .+.......+.. .+.... ..-++... ......++..|.+
T Consensus 76 ~~g~-~l~d~~~v~~----~~~~s~~~i~~L~~~Gv-~f~~~~~g~~~~~~~gg~~-~~r~~~~~--~~tG~~i~~~L~~ 146 (626)
T PRK07803 76 RGGK-FLNNWRMAEL----HAKEAPDRVWELETYGA-LFDRTKDGRISQRNFGGHT-YPRLAHVG--DRTGLELIRTLQQ 146 (626)
T ss_pred HHhc-cCCcHHHHHH----HHHHhHHHHHHHHHCCC-ceEecCCCceeeeecCCcc-cCeEEecC--CCcHHHHHHHHHH
Confidence 0000 0000000000 00112233344555565 332111000000 000000 00011100 1123567778888
Q ss_pred HHHHc--------C-----cEEEeCceEEEEEEcCCeEE-E---EcCCC--cEEEcCEEEEcCCcCh
Q psy7710 213 EFCEL--------G-----GEIRLNQQVESFKENPESVT-I---STKQG--DHLESSYALVCAGLQA 260 (473)
Q Consensus 213 ~~~~~--------G-----v~i~~~~~V~~i~~~~~~v~-v---~~~~g--~~i~ad~VV~aaG~~s 260 (473)
.+++. | +++++++.|+++..+++.+. + ...++ ..+.|+.||+|||++.
T Consensus 147 ~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~ 213 (626)
T PRK07803 147 KIVSLQQEDHAELGDYEARIKVFAECTITELLKDGGRIAGAFGYWRESGRFVLFEAPAVVLATGGIG 213 (626)
T ss_pred HHHhhhccccccccCCcCceEEEeCCEEEEEEEECCEEEEEEEEECCCCeEEEEEcCeEEECCCccc
Confidence 77766 7 99999999999987665442 2 23345 3589999999999864
No 93
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.25 E-value=2.8e-10 Score=113.62 Aligned_cols=70 Identities=11% Similarity=0.092 Sum_probs=57.7
Q ss_pred eeHHHHHHHHHHHHHHcC---cEEEeCceEEEEEEc-------CCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCC
Q psy7710 201 VDWGLVTRVMGEEFCELG---GEIRLNQQVESFKEN-------PESVTISTKQGDHLESSYALVCAGLQADEMALKSGCS 270 (473)
Q Consensus 201 ~~~~~~~~~l~~~~~~~G---v~i~~~~~V~~i~~~-------~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~ 270 (473)
+....+.+.|.+.+.+.+ ++++++++|+++..+ +..+.|++.+|++++||.||.|.|.+| .+.+.+|++
T Consensus 114 i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S-~vR~~~gi~ 192 (437)
T TIGR01989 114 IENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNS-NVRKAANID 192 (437)
T ss_pred EEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCC-hhHHHcCCC
Confidence 445667788888888765 899999999999742 456788888888999999999999998 677888887
Q ss_pred C
Q psy7710 271 L 271 (473)
Q Consensus 271 ~ 271 (473)
.
T Consensus 193 ~ 193 (437)
T TIGR01989 193 T 193 (437)
T ss_pred c
Confidence 5
No 94
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.25 E-value=3.6e-10 Score=115.63 Aligned_cols=177 Identities=12% Similarity=-0.051 Sum_probs=96.6
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeecc--CCCchhHHHHHHHh-----HHH
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIY--YKPGTLKAKLCVEG-----MNL 128 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~--~~~~~~~~~~~~~~-----~~~ 128 (473)
.++||+|||+|.+|++||+.+ +. |.+|+|+||.....++++..+.|.+..... ..++.....+...+ .+.
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~--G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d~~l 82 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ER--GKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKL 82 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hc--CCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCCHHH
Confidence 468999999999999999999 88 899999999843244556555555533221 11111111110000 001
Q ss_pred HHHHHHhcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhh-cCCcccceeEecCCccceeHHHHH
Q psy7710 129 AYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTI-EPYCKGVKAIHSPNTGIVDWGLVT 207 (473)
Q Consensus 129 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~ 207 (473)
++.+ .+...+.++++..+|+ .+..-........ +.........+ .. ......+.
T Consensus 83 v~~~---------------------~~~s~~~i~~L~~~Gv-~f~~~~~g~~~~~~~~g~~~~r~~~-~~--~~~G~~i~ 137 (543)
T PRK06263 83 VEIL---------------------VKEAPKRLKDLEKFGA-LFDRTEDGEIAQRPFGGQSFNRTCY-AG--DRTGHEMM 137 (543)
T ss_pred HHHH---------------------HHHHHHHHHHHHHcCC-cceeCCCCceeecccCCeEcCeEEE-CC--CCCHHHHH
Confidence 1111 1122333444555555 2211000000000 00000000011 11 01135678
Q ss_pred HHHHHHHHHcCcEEEeCceEEEEEEcCCe-E-EEE--c-CCC--cEEEcCEEEEcCCcCh
Q psy7710 208 RVMGEEFCELGGEIRLNQQVESFKENPES-V-TIS--T-KQG--DHLESSYALVCAGLQA 260 (473)
Q Consensus 208 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~-v-~v~--~-~~g--~~i~ad~VV~aaG~~s 260 (473)
..|.+.+++.|+++++++.|+++..++++ + .|. . .+| ..++|+.||+|||+++
T Consensus 138 ~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 138 MGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAG 197 (543)
T ss_pred HHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence 88888888899999999999999876543 3 232 2 455 3589999999999975
No 95
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.24 E-value=1.9e-10 Score=118.45 Aligned_cols=59 Identities=10% Similarity=0.106 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEE-E--EcCCCc-EEEcC-EEEEcCCcChH
Q psy7710 203 WGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVT-I--STKQGD-HLESS-YALVCAGLQAD 261 (473)
Q Consensus 203 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~-v--~~~~g~-~i~ad-~VV~aaG~~s~ 261 (473)
...+...|.+.+++.|++|+++++|++|..+++.+. | ...++. .+.++ .||+|+|.++.
T Consensus 213 G~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 276 (574)
T PRK12842 213 GNALAARLAKSALDLGIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGFSH 276 (574)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCccc
Confidence 356788888889999999999999999998776443 3 333442 47785 79999999963
No 96
>PLN02815 L-aspartate oxidase
Probab=99.24 E-value=2.4e-10 Score=116.91 Aligned_cols=184 Identities=13% Similarity=0.073 Sum_probs=96.5
Q ss_pred CCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHH
Q psy7710 55 PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFD 134 (473)
Q Consensus 55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (473)
..++||+|||+|++|+++|+.+++. | +|+||||.+ +.+++|..+.|.+..... ..++. ..+ +.+...
T Consensus 27 ~~~~DVlVVG~G~AGl~AAl~Aae~--G-~VvlleK~~-~~gg~s~~a~Ggi~a~~~-~~Ds~-e~~-------~~d~~~ 93 (594)
T PLN02815 27 TKYFDFLVIGSGIAGLRYALEVAEY--G-TVAIITKDE-PHESNTNYAQGGVSAVLD-PSDSV-ESH-------MRDTIV 93 (594)
T ss_pred ccccCEEEECccHHHHHHHHHHhhC--C-CEEEEECCC-CCCCcHHHhhcccccCCC-CCCCH-HHH-------HHHHHH
Confidence 3568999999999999999999998 8 899999984 555555555554432211 11111 000 111111
Q ss_pred hcCCCCcccCeEEEEeCc-ChhhHHHHHHHHHhCCCCcceeeCHHHHH-hhcCCcccceeEecCCccceeHHHHHHHHHH
Q psy7710 135 KRNIPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVSAEEIK-TIEPYCKGVKAIHSPNTGIVDWGLVTRVMGE 212 (473)
Q Consensus 135 ~~~~~~~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~ 212 (473)
......++ .+ -. -.+...+.++++..+|+ .+..-...... ..+.... ..-++.. +......+...|.+
T Consensus 94 ~g~~~~d~--~l----v~~~~~~s~e~i~~L~~~Gv-~F~~~~~g~~~~~~~gg~s-~~R~~~~--~d~tG~~i~~~L~~ 163 (594)
T PLN02815 94 AGAFLCDE--ET----VRVVCTEGPERVKELIAMGA-SFDHGEDGNLHLAREGGHS-HHRIVHA--ADMTGREIERALLE 163 (594)
T ss_pred hccCCCcH--HH----HHHHHHHHHHHHHHHHHhCC-eeeecCCCCccccCCCCCc-cCceeec--CCCCHHHHHHHHHH
Confidence 00000000 00 00 01223344455555665 22211000000 0000000 0001111 11124567788888
Q ss_pred HHHHc-CcEEEeCceEEEEEEcC-C----eEEEE---cCCC--cEEEcCEEEEcCCcChH
Q psy7710 213 EFCEL-GGEIRLNQQVESFKENP-E----SVTIS---TKQG--DHLESSYALVCAGLQAD 261 (473)
Q Consensus 213 ~~~~~-Gv~i~~~~~V~~i~~~~-~----~v~v~---~~~g--~~i~ad~VV~aaG~~s~ 261 (473)
.+++. |++|++++.+++|..++ + .+.|. ..+| ..+.|+.||+|||++..
T Consensus 164 ~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~ 223 (594)
T PLN02815 164 AVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGH 223 (594)
T ss_pred HHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCccee
Confidence 88765 89999999999998743 3 22333 3355 35689999999998863
No 97
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.23 E-value=3.9e-10 Score=115.77 Aligned_cols=50 Identities=26% Similarity=0.205 Sum_probs=41.7
Q ss_pred CCCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceE
Q psy7710 54 SPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVV 106 (473)
Q Consensus 54 ~~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~ 106 (473)
+..++||+|||+|++|+++|+.++++ |.+|+||||.. ..+++|..+.|.+
T Consensus 8 ~~~~~DVvVVG~G~AGl~AA~~aae~--G~~VivlEk~~-~~gG~t~~s~G~i 57 (584)
T PRK12835 8 FDREVDVLVVGSGGGGMTAALTAAAR--GLDTLVVEKSA-HFGGSTALSGGGI 57 (584)
T ss_pred ccCcCCEEEECccHHHHHHHHHHHHC--CCcEEEEEcCC-CCCchHHHhCCCc
Confidence 44679999999999999999999999 99999999995 5556666665544
No 98
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.23 E-value=3.2e-10 Score=116.56 Aligned_cols=187 Identities=10% Similarity=0.009 Sum_probs=98.0
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccC-CCchhHHHHHHHhHHHHHHHHH
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYY-KPGTLKAKLCVEGMNLAYEYFD 134 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 134 (473)
.++||+|||+|.+|+++|+.+++. |.+|+|+||.. +.+++|..+.|.+...... ..++. ..+. .+..+
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~--G~~V~lleK~~-~~~g~t~~a~Ggi~a~~~~~~~Ds~-e~~~-------~D~~~ 74 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQS--GQSCALLSKVF-PTRSHTVSAQGGITVALGNTHEDNW-EWHM-------YDTVK 74 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHc--CCcEEEEEccC-CCCCccHHhhhhHhhhcCCCCCCCH-HHHH-------HHHHH
Confidence 468999999999999999999999 99999999984 4444444444443221110 11111 1010 01000
Q ss_pred hcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHH-hhcCCcc------cceeEecCCccceeHHHHH
Q psy7710 135 KRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIK-TIEPYCK------GVKAIHSPNTGIVDWGLVT 207 (473)
Q Consensus 135 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~-~~~p~~~------~~~~~~~~~~~~~~~~~~~ 207 (473)
.-. .......+.. -.+...+.++++.++|+ ++......... ..+.... ...-.+...+ -....++
T Consensus 75 ~g~-~~~d~~~v~~----~~~~s~~~i~~L~~~Gv-~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~--~~G~~i~ 146 (588)
T PRK08958 75 GSD-YIGDQDAIEY----MCKTGPEAILELEHMGL-PFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAAD--RTGHALL 146 (588)
T ss_pred HhC-CCCCHHHHHH----HHHHHHHHHHHHHHcCC-CcccCCCCceeecccccccccccccccceeEecCC--CCHHHHH
Confidence 000 0000000000 01223344455555665 22211000000 0000000 0000111110 1235688
Q ss_pred HHHHHHHHHcCcEEEeCceEEEEEEc-CCeE-EEE---cCCC--cEEEcCEEEEcCCcChH
Q psy7710 208 RVMGEEFCELGGEIRLNQQVESFKEN-PESV-TIS---TKQG--DHLESSYALVCAGLQAD 261 (473)
Q Consensus 208 ~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v-~v~---~~~g--~~i~ad~VV~aaG~~s~ 261 (473)
..|.+.+.+.|+++++++.++++..+ ++.+ .|. ..+| ..+.|+.||+|||+++.
T Consensus 147 ~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 207 (588)
T PRK08958 147 HTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGR 207 (588)
T ss_pred HHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCccc
Confidence 88988888899999999999999875 4443 232 3345 35789999999999874
No 99
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.23 E-value=2.2e-10 Score=111.36 Aligned_cols=70 Identities=23% Similarity=0.402 Sum_probs=54.6
Q ss_pred ceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEE--cC-CC--cEEEcCEEEEcCCcChHHHHHhcCCC
Q psy7710 200 IVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTIS--TK-QG--DHLESSYALVCAGLQADEMALKSGCS 270 (473)
Q Consensus 200 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~--~~-~g--~~i~ad~VV~aaG~~s~~l~~~~g~~ 270 (473)
.++...+.+.|.+.+++.|++++++++|+++..+++++.+. .. +| .+++||.||.|.|.+| .+.+.++..
T Consensus 107 ~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S-~vR~~l~~~ 181 (356)
T PF01494_consen 107 VIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHS-KVRKQLGID 181 (356)
T ss_dssp EEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT--HHHHHTTGG
T ss_pred hhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCccc-chhhhcccc
Confidence 35567788999999999999999999999999888776533 22 34 3689999999999998 677777754
No 100
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.22 E-value=4.3e-10 Score=114.08 Aligned_cols=67 Identities=18% Similarity=0.292 Sum_probs=56.7
Q ss_pred eeEecCCccceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCe-EEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710 191 KAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPES-VTISTKQGDHLESSYALVCAGLQA 260 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~-v~v~~~~g~~i~ad~VV~aaG~~s 260 (473)
++++.+.+|. ..+++.|.+.++++|++|+++++|++|..++++ +.|++.+|.+++||.||+|+|.|.
T Consensus 219 ~g~~~~~gG~---~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~ 286 (493)
T TIGR02730 219 GGINYPKGGV---GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWD 286 (493)
T ss_pred ceEecCCChH---HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHH
Confidence 4566777766 578999999999999999999999999877554 568888887899999999999984
No 101
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.22 E-value=7.7e-10 Score=109.97 Aligned_cols=69 Identities=12% Similarity=0.093 Sum_probs=50.9
Q ss_pred ceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEc---CCeEEEEcC---------CCcEEEcCEEEEcCCcChHHHHHhc
Q psy7710 200 IVDWGLVTRVMGEEFCELGGEIRLNQQVESFKEN---PESVTISTK---------QGDHLESSYALVCAGLQADEMALKS 267 (473)
Q Consensus 200 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~---~~~v~v~~~---------~g~~i~ad~VV~aaG~~s~~l~~~~ 267 (473)
.++-..+-+.|.+.+.+.|++++.+ .++++... ++.+.|++. ++.+++||.||.|.|..| .+.+.+
T Consensus 128 ~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~S-~vrr~l 205 (450)
T PLN00093 128 MVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGANS-RVAKDI 205 (450)
T ss_pred EecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCcch-HHHHHh
Confidence 3566778888999999999999765 57777642 234444431 224799999999999998 677877
Q ss_pred CCC
Q psy7710 268 GCS 270 (473)
Q Consensus 268 g~~ 270 (473)
|+.
T Consensus 206 g~~ 208 (450)
T PLN00093 206 DAG 208 (450)
T ss_pred CCC
Confidence 765
No 102
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.22 E-value=5.2e-10 Score=115.24 Aligned_cols=184 Identities=13% Similarity=0.082 Sum_probs=96.0
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCC---CeEEEEeccCcccCcccCCCcceEEeeccCC-CchhHHHHHHHhHHHHHH
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPK---MKICLVEKEKELGMHQTGHNSGVVHAGIYYK-PGTLKAKLCVEGMNLAYE 131 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G---~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 131 (473)
.++||+|||+|++|+++|+.++++ | .+|+|+||.. +.++.|..+.|.+....... .++.. ... .+
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~--G~~~~~V~lleK~~-~~~~~s~~a~Gg~~a~~~~~~~ds~e-~~~-------~d 72 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAER--SGGKLSVAVVSKTQ-PMRSHSVSAEGGTAAVLYPEKGDSFD-LHA-------YD 72 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHh--CCCCCcEEEEEccc-CCCCCceecccccceeeccccCCCHH-HHH-------HH
Confidence 468999999999999999999999 7 8999999984 44455554444333222110 11110 000 00
Q ss_pred HHHhcCCCCcccCeEEEEeCc-ChhhHHHHHHHHHhCCCCcceeeCHHHHH-hhcCCcccceeEecCCccceeHHHHHHH
Q psy7710 132 YFDKRNIPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVSAEEIK-TIEPYCKGVKAIHSPNTGIVDWGLVTRV 209 (473)
Q Consensus 132 ~~~~~~~~~~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 209 (473)
...... +..+..+ -. -.+...+.++++.++|+ .+..-....+. ..+.........+.. + -....++..
T Consensus 73 ~~~~g~--~~~d~~l----v~~~~~~s~~~i~~L~~~Gv-~f~~~~~G~~~~~~~~g~~~~r~~~~~-d--~tG~~i~~~ 142 (577)
T PRK06069 73 TVKGSD--FLADQDA----VEVFVREAPEEIRFLDHWGV-PWSRRPDGRISQRPFGGMSFPRTTFAA-D--KTGFYIMHT 142 (577)
T ss_pred HHHhhc--ccCCHHH----HHHHHHHHHHHHHHHHHcCC-eeEecCCCcEeeeecCCcccceeeEcC-C--CchHHHHHH
Confidence 000000 0000000 00 01122333455555665 22211000000 000000000011111 0 113557788
Q ss_pred HHHHHHH-cCcEEEeCceEEEEEEcCCeEE----EEcCCCc--EEEcCEEEEcCCcCh
Q psy7710 210 MGEEFCE-LGGEIRLNQQVESFKENPESVT----ISTKQGD--HLESSYALVCAGLQA 260 (473)
Q Consensus 210 l~~~~~~-~Gv~i~~~~~V~~i~~~~~~v~----v~~~~g~--~i~ad~VV~aaG~~s 260 (473)
|.+.+.+ .|+++++++.|+++..+++.+. +...++. .+.|+.||+|||+++
T Consensus 143 L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (577)
T PRK06069 143 LYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAG 200 (577)
T ss_pred HHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence 8888766 6999999999999987665442 2334553 578999999999985
No 103
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.22 E-value=2.4e-10 Score=116.64 Aligned_cols=50 Identities=26% Similarity=0.355 Sum_probs=41.0
Q ss_pred CCCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEE
Q psy7710 54 SPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVH 107 (473)
Q Consensus 54 ~~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~ 107 (473)
.+.++||||||+| +|+++|+.+++. |.+|+||||.+.+ +|++..++|.+.
T Consensus 13 ~d~e~DvvvvG~G-~G~~aA~~a~~~--G~~v~v~Ek~~~~-GG~~~~~gG~~~ 62 (564)
T PRK12845 13 RDTTVDLLVVGSG-TGMAAALAAHEL--GLSVLIVEKSSYV-GGSTARSGGAFW 62 (564)
T ss_pred CCceeCEEEECCc-HHHHHHHHHHHC--CCcEEEEecCCCC-cCcccCcCCCEe
Confidence 3468999999999 899999999999 9999999998554 455556666553
No 104
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.22 E-value=1.9e-10 Score=114.48 Aligned_cols=58 Identities=16% Similarity=0.110 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHcCcE--EEeCceEEEEEEcCCeEEEEcCCC--c--EEEcCEEEEcCCcCh
Q psy7710 203 WGLVTRVMGEEFCELGGE--IRLNQQVESFKENPESVTISTKQG--D--HLESSYALVCAGLQA 260 (473)
Q Consensus 203 ~~~~~~~l~~~~~~~Gv~--i~~~~~V~~i~~~~~~v~v~~~~g--~--~i~ad~VV~aaG~~s 260 (473)
...+.+.|.+.++..|+. |+++++|++|...+++|.|++.++ . +..+|.||+|+|.++
T Consensus 110 ~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIvAtG~~~ 173 (461)
T PLN02172 110 HREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVVCNGHYT 173 (461)
T ss_pred HHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEEeccCCC
Confidence 466888899999988987 999999999998888898877532 1 457899999999874
No 105
>PRK07588 hypothetical protein; Provisional
Probab=99.22 E-value=1.2e-10 Score=114.79 Aligned_cols=59 Identities=12% Similarity=0.193 Sum_probs=48.9
Q ss_pred eHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChH
Q psy7710 202 DWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD 261 (473)
Q Consensus 202 ~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~ 261 (473)
.-..+...|.+.+. .|++++++++|++++.+++++.|++++|.++++|.||.|.|.+|.
T Consensus 101 ~r~~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~ 159 (391)
T PRK07588 101 PRGDLAAAIYTAID-GQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSH 159 (391)
T ss_pred EHHHHHHHHHHhhh-cCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCcc
Confidence 33556666666553 479999999999999988889999888888999999999999983
No 106
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.22 E-value=5.2e-10 Score=114.01 Aligned_cols=183 Identities=16% Similarity=0.150 Sum_probs=95.2
Q ss_pred CCCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHH
Q psy7710 54 SPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYF 133 (473)
Q Consensus 54 ~~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (473)
.+.++||+|||+|++|++||+.++ . |.+|+||||.+ ..+++|..+.|.+..... ..++. ..+ +.+..
T Consensus 6 ~~~e~DVlVVG~G~AGl~AAi~A~-~--G~~V~lieK~~-~~gg~s~~a~Ggi~a~~~-~~ds~-e~~-------~~d~~ 72 (553)
T PRK07395 6 LPSQFDVLVVGSGAAGLYAALCLP-S--HLRVGLITKDT-LKTSASDWAQGGIAAAIA-PDDSP-KLH-------YEDTL 72 (553)
T ss_pred ccccCCEEEECccHHHHHHHHHhh-c--CCCEEEEEccC-CCCCchhhhcccceeccc-CCCCH-HHH-------HHHHH
Confidence 346799999999999999999985 5 79999999985 444555555444432211 11111 000 11111
Q ss_pred HhcCCCCcccCeEEEEeCc-ChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcc-cceeEecCCccceeHHHHHHHHH
Q psy7710 134 DKRNIPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCK-GVKAIHSPNTGIVDWGLVTRVMG 211 (473)
Q Consensus 134 ~~~~~~~~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~l~ 211 (473)
+... +..+..+ -. -.+...+.++++..+|+ .+..-+. ... ..+... ...-.+...+ -....+...|.
T Consensus 73 ~~g~--~~~d~~l----v~~~~~~s~~~i~wL~~~Gv-~f~~~~~-~~~-~~~~~g~s~~r~~~~~d--~~G~~i~~~L~ 141 (553)
T PRK07395 73 KAGA--GLCDPEA----VRFLVEQAPEAIASLVEMGV-AFDRHGQ-HLA-LTLEAAHSRPRVLHAAD--TTGRAIVTTLT 141 (553)
T ss_pred HhcC--CCCCHHH----HHHHHHHHHHHHHHHHhcCC-eeecCCC-cee-eecccccccCeEEEeCC--CChHHHHHHHH
Confidence 1000 0000000 00 01222344455555665 2221110 000 000000 0001111111 11356778888
Q ss_pred HHHHHc-CcEEEeCceEEEEEEcC--CeE-EEE-cCCCc--EEEcCEEEEcCCcCh
Q psy7710 212 EEFCEL-GGEIRLNQQVESFKENP--ESV-TIS-TKQGD--HLESSYALVCAGLQA 260 (473)
Q Consensus 212 ~~~~~~-Gv~i~~~~~V~~i~~~~--~~v-~v~-~~~g~--~i~ad~VV~aaG~~s 260 (473)
+.++++ |++|++++.|++|..++ +.+ .|. ..+|. .+.|+.||+|||+++
T Consensus 142 ~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~~ 197 (553)
T PRK07395 142 EQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGGG 197 (553)
T ss_pred HHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCCc
Confidence 888754 99999999999998763 433 232 23442 478999999999963
No 107
>PRK08275 putative oxidoreductase; Provisional
Probab=99.21 E-value=5.9e-10 Score=114.27 Aligned_cols=187 Identities=13% Similarity=0.114 Sum_probs=94.7
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHh
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDK 135 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (473)
.++||+|||+|.+|++||+.++++++|.+|+||||.+..+++++....+.+........++. . ..+.+..+.
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~-~-------~~~~d~~~~ 79 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATP-E-------QYTKEITIA 79 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCH-H-------HHHHHHHHh
Confidence 46899999999999999999998755789999999854333332222111111000000110 0 001111100
Q ss_pred cCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHHH
Q psy7710 136 RNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFC 215 (473)
Q Consensus 136 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 215 (473)
+-.......+.. -.+...+.++++..+|+ .+......... .+.....+....+ .-....+.+.|.+.++
T Consensus 80 -~~~~~d~~~v~~----~~~~s~~~i~~L~~~Gv-~f~~~~~g~~~--~~~~~~~~~~~~~---~~~G~~i~~~L~~~~~ 148 (554)
T PRK08275 80 -NDGIVDQKAVYA----YAEHSFETIQQLDRWGV-KFEKDETGDYA--VKKVHHMGSYVLP---MPEGHDIKKVLYRQLK 148 (554)
T ss_pred -cCCCccHHHHHH----HHHhhHHHHHHHHHCCC-eeEeCCCCCEe--eecccccCccccc---CCChHHHHHHHHHHHH
Confidence 000000000000 01112334455555665 22211000000 0000000000000 0113467888999899
Q ss_pred HcCcEEEeCceEEEEEEc-CCeE-EE---EcCCCc--EEEcCEEEEcCCcChH
Q psy7710 216 ELGGEIRLNQQVESFKEN-PESV-TI---STKQGD--HLESSYALVCAGLQAD 261 (473)
Q Consensus 216 ~~Gv~i~~~~~V~~i~~~-~~~v-~v---~~~~g~--~i~ad~VV~aaG~~s~ 261 (473)
+.|++|++++.|++|..+ ++.+ .| ...+|. .+.|+.||+|||+++.
T Consensus 149 ~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~ 201 (554)
T PRK08275 149 RARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGR 201 (554)
T ss_pred HCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCccc
Confidence 999999999999999876 4433 23 234553 5789999999999853
No 108
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.21 E-value=2.9e-10 Score=111.72 Aligned_cols=66 Identities=11% Similarity=0.244 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHH-cCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCC
Q psy7710 204 GLVTRVMGEEFCE-LGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCS 270 (473)
Q Consensus 204 ~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~ 270 (473)
..+...|.+.+.+ .|++++++++|++++.+++++.|++.+|.+++||.||.|.|.+| .+.+.+|+.
T Consensus 110 ~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S-~vR~~~gi~ 176 (384)
T PRK08849 110 RLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANS-QVRQLAGIG 176 (384)
T ss_pred HHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCc-hhHHhcCCC
Confidence 4466667777655 47999999999999998888888888888999999999999998 577777765
No 109
>PRK06126 hypothetical protein; Provisional
Probab=99.21 E-value=5e-10 Score=115.22 Aligned_cols=69 Identities=17% Similarity=0.345 Sum_probs=53.8
Q ss_pred eHHHHHHHHHHHHHH-cCcEEEeCceEEEEEEcCCeEEEEc---CCC--cEEEcCEEEEcCCcChHHHHHhcCCCC
Q psy7710 202 DWGLVTRVMGEEFCE-LGGEIRLNQQVESFKENPESVTIST---KQG--DHLESSYALVCAGLQADEMALKSGCSL 271 (473)
Q Consensus 202 ~~~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~v~v~~---~~g--~~i~ad~VV~aaG~~s~~l~~~~g~~~ 271 (473)
+...+...|.+.+++ .|++|+++++|+++..+++++.++. .+| .++++|+||.|.|.+| .+.+.+|+..
T Consensus 124 ~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S-~VR~~lgi~~ 198 (545)
T PRK06126 124 PQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGARS-AVRRSLGISY 198 (545)
T ss_pred CHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEECCCCcEEEEEEEEEEecCCcch-HHHHhcCCcc
Confidence 345566777877776 4899999999999998887766543 334 3689999999999998 5888888764
No 110
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.20 E-value=6.6e-10 Score=114.44 Aligned_cols=181 Identities=13% Similarity=0.071 Sum_probs=98.4
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccC-CCchhHHHHHHHhHHHHHHHHH
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYY-KPGTLKAKLCVEGMNLAYEYFD 134 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 134 (473)
.++||+|||+|++|+++|+++++. .+|+|+||. .+++++|..+.|.+...... ..+.... . +.+...
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~~---~~VilleK~-~~~~g~s~~a~Ggi~a~~~~~~~D~~e~-~-------~~d~~~ 71 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGPR---ARTAVLTKL-YPTRSHTGAAQGGMCAALANVEEDNWEW-H-------TFDTVK 71 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHhC---CCEEEEeCC-CCCCCCchhhhcchhhcccCCCCCCHHH-H-------HHHHHH
Confidence 468999999999999999999864 799999998 45555565555544322211 1111100 0 001110
Q ss_pred hcCCCCcccCeEEEEeCc----ChhhHHHHHHHHHhCCCCcceeeC-HHHHHhhcCCccc-------ceeEecCCcccee
Q psy7710 135 KRNIPYKKCGKLIVALNE----QLEPLHDLYERSIQNNVKDVRLVS-AEEIKTIEPYCKG-------VKAIHSPNTGIVD 202 (473)
Q Consensus 135 ~~~~~~~~~g~l~~~~~~----~~~~~~~~~~~~~~~g~~~~~~l~-~~~~~~~~p~~~~-------~~~~~~~~~~~~~ 202 (473)
. +. + +...+ -.+...+.++++.++|+ .+.... .......++.... ....+. . ...
T Consensus 72 ~-g~-~-------~~d~~~v~~~~~~~~~~i~~L~~~Gv-~f~~~~~g~~~~~~~gg~s~~~~~~~~~r~~~~-~--~~t 138 (583)
T PRK08205 72 G-GD-Y-------LVDQDAAEIMAKEAIDAVLDLEKMGL-PFNRTPEGKIDQRRFGGHTRDHGKAPVRRACYA-A--DRT 138 (583)
T ss_pred h-hc-C-------CCCHHHHHHHHHHHHHHHHHHHHcCC-ccccCCCCceeecccccccccccCCCccceecc-C--CCC
Confidence 0 00 0 00000 01223344555666666 332111 0000000110000 000111 0 012
Q ss_pred HHHHHHHHHHHHHHcCcEEEeCceEEEEEEcC----CeE-EE---EcCCCc--EEEcCEEEEcCCcChH
Q psy7710 203 WGLVTRVMGEEFCELGGEIRLNQQVESFKENP----ESV-TI---STKQGD--HLESSYALVCAGLQAD 261 (473)
Q Consensus 203 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~----~~v-~v---~~~~g~--~i~ad~VV~aaG~~s~ 261 (473)
...+...|.+.+++.|+++++++.|++|..++ +.+ .+ ...++. .+.|+.||+|||+++.
T Consensus 139 G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 207 (583)
T PRK08205 139 GHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGR 207 (583)
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCcc
Confidence 46788889999999999999999999998654 433 23 224452 5789999999999863
No 111
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=99.20 E-value=5.9e-10 Score=114.03 Aligned_cols=56 Identities=14% Similarity=0.134 Sum_probs=42.8
Q ss_pred HHcCcEEEeCceEEEEEEcCCeE-EEEcCC-Cc---EEEcCEEEEcCCcC-hHHHHHhcCCC
Q psy7710 215 CELGGEIRLNQQVESFKENPESV-TISTKQ-GD---HLESSYALVCAGLQ-ADEMALKSGCS 270 (473)
Q Consensus 215 ~~~Gv~i~~~~~V~~i~~~~~~v-~v~~~~-g~---~i~ad~VV~aaG~~-s~~l~~~~g~~ 270 (473)
++.|++|++++.|++|..+++++ .|+..+ +. .+.++.||+|+|+. |+.|+..+||.
T Consensus 205 ~r~nl~i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG 266 (532)
T TIGR01810 205 KRPNLEVQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQLSGIG 266 (532)
T ss_pred cCCCeEEEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHHhcCCC
Confidence 35689999999999999876543 344322 21 35789999999995 99999988875
No 112
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.20 E-value=8.5e-10 Score=113.60 Aligned_cols=186 Identities=11% Similarity=0.039 Sum_probs=96.3
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccC-CCchhHHHHHHHhHHHHHHHHH
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYY-KPGTLKAKLCVEGMNLAYEYFD 134 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 134 (473)
.++||+|||+|.+|+++|+.+++. |.+|+||||.. ..++.|..+.|.+...... ..+... .. +.+...
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~--G~~V~vleK~~-~~~g~t~~a~Ggi~~~~~~~~~ds~~-~~-------~~dt~~ 79 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARA--GLSVAVLSKVF-PTRSHTVAAQGGIGASLGNMSEDNWH-YH-------FYDTIK 79 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHC--CCcEEEEeccC-CCCCCchhccCCcccccccccccChh-Hh-------HHHHHH
Confidence 568999999999999999999999 99999999984 4445554444433322110 111110 00 000000
Q ss_pred hcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHH-hhcCCc-------ccceeEecCCccceeHHHH
Q psy7710 135 KRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIK-TIEPYC-------KGVKAIHSPNTGIVDWGLV 206 (473)
Q Consensus 135 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~-~~~p~~-------~~~~~~~~~~~~~~~~~~~ 206 (473)
... .+.....+.. -.+...+.+.++.++|+ .+..-....+. ..+... ......+. . ......+
T Consensus 80 ~g~-~~~d~~~v~~----~~~~a~~~i~~L~~~Gv-~f~~~~~G~~~~~~~gg~s~~~~~~~~~r~~~~-~--~~tG~~l 150 (591)
T PRK07057 80 GSD-WLGDQDAIEF----MCREAPNVVYELEHFGM-PFDRNADGTIYQRPFGGHTANYGEKPVQRACAA-A--DRTGHAL 150 (591)
T ss_pred hcC-CCCCHHHHHH----HHHHHHHHHHHHHhcCC-cceeCCCCcEeeeccCCccccccCCccceeeec-C--CCChHHH
Confidence 000 0000000000 01122233444445555 22211000000 000000 00000110 0 0113568
Q ss_pred HHHHHHHHHHcCcEEEeCceEEEEEEc-CCeE-EEE---cCCC--cEEEcCEEEEcCCcChH
Q psy7710 207 TRVMGEEFCELGGEIRLNQQVESFKEN-PESV-TIS---TKQG--DHLESSYALVCAGLQAD 261 (473)
Q Consensus 207 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v-~v~---~~~g--~~i~ad~VV~aaG~~s~ 261 (473)
...|.+.+.+.|++++.++.++++..+ ++.+ .|. ..+| ..+.|+.||+|||+++.
T Consensus 151 ~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 212 (591)
T PRK07057 151 LHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGR 212 (591)
T ss_pred HHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCccc
Confidence 888888888899999999999999875 3433 332 2345 35789999999999864
No 113
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.20 E-value=1.3e-09 Score=106.76 Aligned_cols=69 Identities=9% Similarity=0.130 Sum_probs=58.1
Q ss_pred ceeHHHHHHHHHHHHHHcC-cEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCC
Q psy7710 200 IVDWGLVTRVMGEEFCELG-GEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCS 270 (473)
Q Consensus 200 ~~~~~~~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~ 270 (473)
.+.-..+.+.|.+.+.+.+ ++++++++|+++..+++++.|.++++ +++||.||.|.|.+| .+.+.++++
T Consensus 100 ~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~S-~vR~~l~~~ 169 (374)
T PRK06617 100 VVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGANS-KVRSHYFAN 169 (374)
T ss_pred EEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCCc-hhHHhcCCC
Confidence 3556778888999888775 89999999999998888888888777 999999999999998 566777665
No 114
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.19 E-value=1.2e-09 Score=112.67 Aligned_cols=180 Identities=13% Similarity=0.128 Sum_probs=95.2
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHh
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDK 135 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (473)
.++||+|||+|.+|+++|+.+++..+|.+|+||||.+..+++ + .+.|............ +.+.+.+....
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~-~-~a~G~~~~~~~~~~~d--------s~e~~~~d~~~ 79 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSG-A-VAQGLSAINAYIGEGE--------TPEDYVRYVRK 79 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCc-c-cccCccccccccccCC--------CHHHHHHHHHH
Confidence 468999999999999999999986457899999998533222 2 2222211110001110 00111111100
Q ss_pred cCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHHH
Q psy7710 136 RNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFC 215 (473)
Q Consensus 136 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 215 (473)
.+........+. .-.+...+.++++..+|+ .+....... ..+ .+.. ....++..+...|.+.++
T Consensus 80 ~~~~~~d~~lv~----~~~~~s~~~i~~L~~~Gv-~f~~~~~G~---~~~-----~g~~---~~~~~G~~~~~~L~~~a~ 143 (608)
T PRK06854 80 DLMGIVREDLVY----DIARHVDSVVHLFEEWGL-PIWKDENGK---YVR-----RGRW---QIMINGESYKPIVAEAAK 143 (608)
T ss_pred hccCCCCHHHHH----HHHHhHHHHHHHHHHcCC-eeeecCCCC---ccc-----cCCc---cCCCChHHHHHHHHHHHH
Confidence 000000000000 001223344555666666 222110000 000 0000 001345677888888888
Q ss_pred HcC-cEEEeCceEEEEEEcCCeEE-E---EcCCC--cEEEcCEEEEcCCcChH
Q psy7710 216 ELG-GEIRLNQQVESFKENPESVT-I---STKQG--DHLESSYALVCAGLQAD 261 (473)
Q Consensus 216 ~~G-v~i~~~~~V~~i~~~~~~v~-v---~~~~g--~~i~ad~VV~aaG~~s~ 261 (473)
+.| +++++++.|.++..+++.+. | .+.++ ..+.|+.||+|||+++.
T Consensus 144 ~~ggV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 144 KALGDNVLNRVFITDLLVDDNRIAGAVGFSVRENKFYVFKAKAVIVATGGAAG 196 (608)
T ss_pred hcCCCEEEeCCEEEEEEEeCCEEEEEEEEEccCCcEEEEECCEEEECCCchhh
Confidence 776 99999999999986655432 3 33444 36899999999999874
No 115
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.19 E-value=6e-10 Score=114.60 Aligned_cols=67 Identities=13% Similarity=0.108 Sum_probs=50.1
Q ss_pred eeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEE-EEc-CCC--cEEEc-CEEEEcCCcCh--HHHHHhc
Q psy7710 201 VDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVT-IST-KQG--DHLES-SYALVCAGLQA--DEMALKS 267 (473)
Q Consensus 201 ~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~-v~~-~~g--~~i~a-d~VV~aaG~~s--~~l~~~~ 267 (473)
.++..++..|.+.++++|++++++++|++|..+++.+. |.. .++ ..+.| +.||+|+|+++ .++++..
T Consensus 218 ~~G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~em~~~~ 291 (578)
T PRK12843 218 VMGNALIGRLLYSLRARGVRILTQTDVESLETDHGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQLRREL 291 (578)
T ss_pred cccHHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEecCCeEEEEEccceEEECCCCcccCHHHHHHh
Confidence 45677899999999999999999999999987655443 433 233 24676 68999999995 3555543
No 116
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.19 E-value=3.1e-09 Score=103.18 Aligned_cols=111 Identities=13% Similarity=0.143 Sum_probs=66.6
Q ss_pred ceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeee
Q psy7710 200 IVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFR 279 (473)
Q Consensus 200 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~ 279 (473)
.++...+.+.+.+.+.. + ++++++|+++. .+++.+ .+|.+++|+.||.|.|..+..... ...+-..
T Consensus 85 ~I~r~~f~~~l~~~l~~-~--i~~~~~V~~v~--~~~v~l--~dg~~~~A~~VI~A~G~~s~~~~~-------~~~Q~f~ 150 (370)
T TIGR01789 85 SMTSTRFHEGLLQAFPE-G--VILGRKAVGLD--ADGVDL--APGTRINARSVIDCRGFKPSAHLK-------GGFQVFL 150 (370)
T ss_pred EEEHHHHHHHHHHhhcc-c--EEecCEEEEEe--CCEEEE--CCCCEEEeeEEEECCCCCCCcccc-------ceeeEEE
Confidence 45556677777655533 3 77799999883 344555 466689999999999988643322 1345567
Q ss_pred eEEEEeCcCcccCccccc-ccCCCCCCCccEEEEecCCCCeEEECCC
Q psy7710 280 GEYLLLNPAKQHLVRGNI-YPVPDPNFPFLGVHFTPRMDGSVWLGPN 325 (473)
Q Consensus 280 g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~g~~~iG~~ 325 (473)
|..+.+..+........+ +..+... ....+|+.|..++++++..|
T Consensus 151 G~~~r~~~p~~~~~~~lMD~~~~q~~-g~~F~Y~lP~~~~~~lvE~T 196 (370)
T TIGR01789 151 GREMRLQEPHGLENPIIMDATVDQLA-GYRFVYVLPLGSHDLLIEDT 196 (370)
T ss_pred EEEEEEcCCCCCCccEEEeeeccCCC-CceEEEECcCCCCeEEEEEE
Confidence 787887644211111110 1111111 12246989999899888544
No 117
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.19 E-value=5.6e-10 Score=113.36 Aligned_cols=64 Identities=16% Similarity=0.189 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHH-cCcEEEeCceEEEEEEcCCeEE-EEc-CCC--cEEEcC-EEEEcCCcC--hHHHHHhc
Q psy7710 204 GLVTRVMGEEFCE-LGGEIRLNQQVESFKENPESVT-IST-KQG--DHLESS-YALVCAGLQ--ADEMALKS 267 (473)
Q Consensus 204 ~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~v~-v~~-~~g--~~i~ad-~VV~aaG~~--s~~l~~~~ 267 (473)
..+...+.+.+.+ .|++|+++++|++|..+++.|. |.. .++ ..++|+ .||+|||++ ..++++..
T Consensus 173 ~~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~~n~~m~~~~ 244 (513)
T PRK12837 173 RALIGRFLAALARFPNARLRLNTPLVELVVEDGRVVGAVVERGGERRRVRARRGVLLAAGGFEQNDDMRARY 244 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCEEEEEEEEECCcEEEEEeCceEEEeCCCccCCHHHHHHh
Confidence 3566667776665 4999999999999988766543 322 233 357886 799999998 34566554
No 118
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.18 E-value=2.8e-09 Score=102.87 Aligned_cols=66 Identities=17% Similarity=0.142 Sum_probs=56.5
Q ss_pred eHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEE-EEcCCC--cEEEcCEEEEcCCcC-hHHHHHhc
Q psy7710 202 DWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVT-ISTKQG--DHLESSYALVCAGLQ-ADEMALKS 267 (473)
Q Consensus 202 ~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~-v~~~~g--~~i~ad~VV~aaG~~-s~~l~~~~ 267 (473)
-+.++.+.|.+.++++|++++.+++|.++..+++++. |.+.++ ..++||.||+|+|+| |..|.+.+
T Consensus 261 ~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l 330 (419)
T TIGR03378 261 LGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEF 330 (419)
T ss_pred cHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhc
Confidence 3478899999999999999999999999998877665 665554 489999999999999 99998765
No 119
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.18 E-value=3.4e-10 Score=115.76 Aligned_cols=49 Identities=33% Similarity=0.364 Sum_probs=41.9
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEE
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVH 107 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~ 107 (473)
.++||+|||+|.+|+++|+.++++ |.+|+||||.. ..++++..+.|.+.
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~--G~~v~liEk~~-~~gG~~~~s~g~~~ 53 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADS--GLEPLIVEKQD-KVGGSTAMSGGVLW 53 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHC--CCcEEEEecCC-CCCceeceecceee
Confidence 578999999999999999999999 99999999984 45566777776653
No 120
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.18 E-value=1.1e-09 Score=112.79 Aligned_cols=185 Identities=9% Similarity=-0.014 Sum_probs=95.1
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccC-CCchhHHHHHHHhHHHHHHHHH
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYY-KPGTLKAKLCVEGMNLAYEYFD 134 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 134 (473)
.++||+|||+|++|+++|+.++++ |.+|+||||.. +.+++|..+.|.+...... .+..-...+. .+..+
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~--G~~V~lieK~~-~~~g~s~~a~Ggi~a~~~~~~~~Ds~e~~~-------~d~~~ 71 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEA--GVHVDLFSLVP-VKRSHSVCAQGGINGAVNTKGEGDSPWIHF-------DDTVY 71 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHc--CCcEEEEEccC-CCCCcccccCCCeEEecCcCCCCCCHHHHH-------HHHHH
Confidence 356999999999999999999999 99999999994 5555666665544432210 0110000111 01100
Q ss_pred hcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecC---CccceeHHHHHHHHH
Q psy7710 135 KRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSP---NTGIVDWGLVTRVMG 211 (473)
Q Consensus 135 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~~~~~~l~ 211 (473)
. +-.......+.. -.+...+.++++.++|+ .+......... ....++-..+ ..+......+...|.
T Consensus 72 ~-g~~~~d~~~v~~----~~~~s~~~i~~L~~~Gv-~f~~~~~g~~~-----~~~~gg~~~~R~~~~~~~tG~~i~~~L~ 140 (589)
T PRK08641 72 G-GDFLANQPPVKA----MCEAAPGIIHLLDRMGV-MFNRTPEGLLD-----FRRFGGTLHHRTAFAGATTGQQLLYALD 140 (589)
T ss_pred h-cCCcCCHHHHHH----HHHHHHHHHHHHHHcCC-CcccCCCCcEe-----eeccCCeecccccccCCCcHHHHHHHHH
Confidence 0 000000000000 01122334455555665 22110000000 0000000000 011123456777887
Q ss_pred HHHHHcC----cEEEeCceEEEEEEc-CCeE-EEE--c-CCC--cEEEcCEEEEcCCcChH
Q psy7710 212 EEFCELG----GEIRLNQQVESFKEN-PESV-TIS--T-KQG--DHLESSYALVCAGLQAD 261 (473)
Q Consensus 212 ~~~~~~G----v~i~~~~~V~~i~~~-~~~v-~v~--~-~~g--~~i~ad~VV~aaG~~s~ 261 (473)
+.+++.+ ++++.++.++++..+ ++.+ .|. . .++ ..+.|+.||+|||+++.
T Consensus 141 ~~~~~~~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 201 (589)
T PRK08641 141 EQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPGI 201 (589)
T ss_pred HHHHhhhccCCcEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCcC
Confidence 7776543 789999999999874 4443 233 2 233 25789999999999863
No 121
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.18 E-value=8.2e-10 Score=114.67 Aligned_cols=58 Identities=10% Similarity=0.150 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeE---EEEc-CCCc--EEEcCEEEEcCCcChH
Q psy7710 204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESV---TIST-KQGD--HLESSYALVCAGLQAD 261 (473)
Q Consensus 204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v---~v~~-~~g~--~i~ad~VV~aaG~~s~ 261 (473)
..+...|.+.+.+.|++|+.++.|++|..+++.+ .+.. .+|. .+.|+.||+|||++..
T Consensus 158 ~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~ 221 (657)
T PRK08626 158 HTMLYAVDNEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYGR 221 (657)
T ss_pred HHHHHHHHHHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccC
Confidence 3566778888889999999999999999876643 3432 4562 4679999999998863
No 122
>PRK06753 hypothetical protein; Provisional
Probab=99.18 E-value=1.2e-09 Score=107.04 Aligned_cols=67 Identities=10% Similarity=0.182 Sum_probs=53.1
Q ss_pred eeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCC
Q psy7710 201 VDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCS 270 (473)
Q Consensus 201 ~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~ 270 (473)
++-..+.+.|.+.+. +.+|+++++|+++..+++++.|++++|.++++|.||.|.|.+| .+.+.++..
T Consensus 95 i~R~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S-~vR~~~~~~ 161 (373)
T PRK06753 95 LHRQTLIDIIKSYVK--EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHS-KVRQSVNAD 161 (373)
T ss_pred ccHHHHHHHHHHhCC--CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcch-HHHHHhCCC
Confidence 444566666766654 4689999999999988888999888888899999999999998 566666543
No 123
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.17 E-value=6e-09 Score=107.16 Aligned_cols=67 Identities=21% Similarity=0.385 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHc-CcEEEeCceEEEEEEcCCeEEEE--cCCCc-EEEcCEEEEcCCcChHHHHHhcCCCC
Q psy7710 204 GLVTRVMGEEFCEL-GGEIRLNQQVESFKENPESVTIS--TKQGD-HLESSYALVCAGLQADEMALKSGCSL 271 (473)
Q Consensus 204 ~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~v~v~--~~~g~-~i~ad~VV~aaG~~s~~l~~~~g~~~ 271 (473)
..+.+.|.+.+.+. |++++++++|+++..+++++.++ +.++. +++||+||.|.|.+|. +.+.+|++.
T Consensus 125 ~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S~-vR~~lg~~~ 195 (547)
T PRK08132 125 YYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDGARSP-LREMLGLEF 195 (547)
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCCCCcH-HHHHcCCCC
Confidence 45666777777765 79999999999999888777644 34453 6899999999999984 778888764
No 124
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.17 E-value=9.1e-10 Score=111.53 Aligned_cols=183 Identities=13% Similarity=0.097 Sum_probs=95.1
Q ss_pred cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHhc
Q psy7710 57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDKR 136 (473)
Q Consensus 57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (473)
++||+|||+|.+|+++|+++++ |.+|+||||.+ +.+++|..+.|.+..... ..++.. . .+.+.....
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~---g~~V~lveK~~-~~~g~s~~a~Ggi~~~~~-~~ds~e-~-------~~~d~~~~g 69 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH---EYNVIIITKKT-KRNSNSHLAQGGIAAAVA-TYDSPN-D-------HFEDTLVAG 69 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc---CCCEEEEeccC-CCCCCchhcCccceeccc-CCCCHH-H-------HHHHHHHhc
Confidence 6899999999999999999964 68999999995 445555545554433221 111110 0 111111100
Q ss_pred CCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHH-HhhcCCcccceeEecCCccceeHHHHHHHHHHHHH
Q psy7710 137 NIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEI-KTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFC 215 (473)
Q Consensus 137 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 215 (473)
.-..++ ..+.. -.+...+.++++.++|+ .+..-....+ ...+.... ..-.+.. .+...+..+++.|.+.++
T Consensus 70 ~~~~d~-~~v~~----~~~~s~~~i~~L~~~Gv-~f~~~~~g~~~~~~~gg~~-~~r~~~~-~gd~~g~~i~~~L~~~~~ 141 (510)
T PRK08071 70 CHHNNE-RAVRY----LVEEGPKEIQELIENGM-PFDGDETGPLHLGKEGAHR-KRRILHA-GGDATGKNLLEHLLQELV 141 (510)
T ss_pred cCcCCH-HHHHH----HHHHHHHHHHHHHHcCC-ccccCCCCceeeccCcCcc-CCeEEec-CCCCcHHHHHHHHHHHHh
Confidence 000000 00000 01222334445555665 2211000000 00000000 0011111 112235668888888776
Q ss_pred HcCcEEEeCceEEEEEEcCCeEE-EEc--CCC--cEEEcCEEEEcCCcChH
Q psy7710 216 ELGGEIRLNQQVESFKENPESVT-IST--KQG--DHLESSYALVCAGLQAD 261 (473)
Q Consensus 216 ~~Gv~i~~~~~V~~i~~~~~~v~-v~~--~~g--~~i~ad~VV~aaG~~s~ 261 (473)
.|++|++++.|+++..+++.+. |.+ .++ ..++|+.||+|||+++.
T Consensus 142 -~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 142 -PHVTVVEQEMVIDLIIENGRCIGVLTKDSEGKLKRYYADYVVLASGGCGG 191 (510)
T ss_pred -cCCEEEECeEhhheeecCCEEEEEEEEECCCcEEEEEcCeEEEecCCCcc
Confidence 6999999999999987666443 332 334 26789999999999863
No 125
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.17 E-value=8.8e-10 Score=111.73 Aligned_cols=177 Identities=14% Similarity=0.096 Sum_probs=94.7
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeecc--CCCchhHHHHHHHh-----HHH
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIY--YKPGTLKAKLCVEG-----MNL 128 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~--~~~~~~~~~~~~~~-----~~~ 128 (473)
.++||+|||+|++|+++|+.++ +.+|+||||.....+++|..+.|.+..... .+++.+.......+ .+.
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa----~~~V~lleK~~~~~gg~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~g~~d~~~ 83 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLA----PRPVVVLSPAPLGEGASSAWAQGGIAAALGPDDSPALHAADTLAAGAGLCDPAV 83 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhC----cCCEEEEECCCCCCCcchHHhhhccccccCCCCCHHHHHHHHHHhhCCCCCHHH
Confidence 5689999999999999999996 469999999843244555555554432211 11111111110000 000
Q ss_pred HHHHHHhcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHH-hhcCCcccceeEecCCccceeHHHHH
Q psy7710 129 AYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIK-TIEPYCKGVKAIHSPNTGIVDWGLVT 207 (473)
Q Consensus 129 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~ 207 (473)
++.+ .+...+.++++.++|+ .+..-...... ..+.........+.. +...+..+.
T Consensus 84 v~~~---------------------~~~s~~~i~wL~~~Gv-~f~~~~~G~~~~~~~~~~~~~r~~~~~--g~~~G~~l~ 139 (513)
T PRK07512 84 AALI---------------------TAEAPAAIEDLLRLGV-PFDRDADGRLALGLEAAHSRRRIVHVG--GDGAGAAIM 139 (513)
T ss_pred HHHH---------------------HHHHHHHHHHHHHhCC-ccccCCCCccccccccCccCCcEEEcC--CCCCHHHHH
Confidence 1111 1222334455555665 22210000000 000000000011111 112246788
Q ss_pred HHHHHHHHHc-CcEEEeCceEEEEEEcCCeE-EEEc--CCC-cEEEcCEEEEcCCcCh
Q psy7710 208 RVMGEEFCEL-GGEIRLNQQVESFKENPESV-TIST--KQG-DHLESSYALVCAGLQA 260 (473)
Q Consensus 208 ~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~v-~v~~--~~g-~~i~ad~VV~aaG~~s 260 (473)
..|.+.+++. |++++.++.|++|..+++.+ .|.. .++ ..+.|+.||+|||+++
T Consensus 140 ~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~ 197 (513)
T PRK07512 140 RALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPARAVVLATGGIG 197 (513)
T ss_pred HHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECCEEEEcCCCCc
Confidence 8898888775 89999999999998666543 3332 222 2589999999999974
No 126
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=99.17 E-value=1.9e-10 Score=108.86 Aligned_cols=64 Identities=16% Similarity=0.174 Sum_probs=45.3
Q ss_pred HHHHHHHHHHcCcEEEeCceEEEEEEc--CCe---EEEEcCCCc----EEEcCEEEEcCCcC-hHHHHHhcCCC
Q psy7710 207 TRVMGEEFCELGGEIRLNQQVESFKEN--PES---VTISTKQGD----HLESSYALVCAGLQ-ADEMALKSGCS 270 (473)
Q Consensus 207 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~--~~~---v~v~~~~g~----~i~ad~VV~aaG~~-s~~l~~~~g~~ 270 (473)
...|...+.+.|++|++++.|++|..+ +++ |.+...++. .+.++.||+|+|+. |+.|+..+|+.
T Consensus 196 ~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGiG 269 (296)
T PF00732_consen 196 TTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGIG 269 (296)
T ss_dssp HHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTEE
T ss_pred hcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhcccccc
Confidence 334444444449999999999999764 443 334444443 46789999999997 89999999873
No 127
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.17 E-value=4.6e-10 Score=106.51 Aligned_cols=56 Identities=18% Similarity=0.284 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710 204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA 260 (473)
Q Consensus 204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s 260 (473)
..+...+.+.+++.|+++++ ++|+++..+++.+.|++.++.++++|+||+|+|...
T Consensus 57 ~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~ 112 (300)
T TIGR01292 57 PELMEKMKEQAVKFGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASA 112 (300)
T ss_pred HHHHHHHHHHHHHcCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCc
Confidence 34566677888889999998 899999988888888887777899999999999864
No 128
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.16 E-value=2.1e-09 Score=107.91 Aligned_cols=175 Identities=11% Similarity=0.112 Sum_probs=93.6
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHhcC
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDKRN 137 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (473)
+||+|||+|++|+++|+.+++. |.+|+|+||.. . .++|..+.+.+..... ..++.. .+ +.+..+...
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~--G~~V~liek~~-~-~~~s~~a~ggi~~~~~-~~ds~e-~~-------~~d~~~~~~ 68 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKK--GFDVTIIGPGI-K-KSNSYLAQAGIAFPIL-EGDSIR-AH-------VLDTIRAGK 68 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHC--CCeEEEEeCCC-C-CCCcHHHcCCcccccC-CCCcHH-HH-------HHHHHHHhc
Confidence 6999999999999999999999 99999999973 2 2233323232211110 011110 00 001110000
Q ss_pred CCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHHHHc
Q psy7710 138 IPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCEL 217 (473)
Q Consensus 138 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 217 (473)
...++ ..+.. -.+...+.++++.++|+ .+.. .. ..... ...-.+... ......+.+.|.+.+++.
T Consensus 69 ~~~d~-~~v~~----~~~~~~~~i~~L~~~Gv-~f~~---~~---~~~g~-~~~r~~~~~--~~~G~~i~~~L~~~~~~~ 133 (466)
T PRK08401 69 YINDE-EVVWN----VISKSSEAYDFLTSLGL-EFEG---NE---LEGGH-SFPRVFTIK--NETGKHIIKILYKHAREL 133 (466)
T ss_pred CCCCH-HHHHH----HHHHHHHHHHHHHHcCC-Cccc---CC---CcCCc-cCCeEEECC--CCchHHHHHHHHHHHHhc
Confidence 00000 00000 01122334455556666 2211 00 00000 000111111 112356888899999999
Q ss_pred CcEEEeCceEEEEEEcCCeE-EEEcCCCcEEEcCEEEEcCCcChHH
Q psy7710 218 GGEIRLNQQVESFKENPESV-TISTKQGDHLESSYALVCAGLQADE 262 (473)
Q Consensus 218 Gv~i~~~~~V~~i~~~~~~v-~v~~~~g~~i~ad~VV~aaG~~s~~ 262 (473)
|++++++ .++++..+++.+ .|.+ ++..++++.||+|||+++..
T Consensus 134 gv~i~~~-~v~~l~~~~g~v~Gv~~-~g~~i~a~~VVLATGG~~~~ 177 (466)
T PRK08401 134 GVNFIRG-FAEELAIKNGKAYGVFL-DGELLKFDATVIATGGFSGL 177 (466)
T ss_pred CCEEEEe-EeEEEEeeCCEEEEEEE-CCEEEEeCeEEECCCcCcCC
Confidence 9999875 788887666554 3555 34579999999999999753
No 129
>PRK02106 choline dehydrogenase; Validated
Probab=99.15 E-value=7.4e-10 Score=113.98 Aligned_cols=57 Identities=11% Similarity=0.028 Sum_probs=43.6
Q ss_pred HHcCcEEEeCceEEEEEEcCCeE-EEEc--CCC--cEEEcCEEEEcCCcC-hHHHHHhcCCCC
Q psy7710 215 CELGGEIRLNQQVESFKENPESV-TIST--KQG--DHLESSYALVCAGLQ-ADEMALKSGCSL 271 (473)
Q Consensus 215 ~~~Gv~i~~~~~V~~i~~~~~~v-~v~~--~~g--~~i~ad~VV~aaG~~-s~~l~~~~g~~~ 271 (473)
++.+++|++++.|++|..+++++ .|+. .++ ..+.++.||+|+|+. ++.|+..+||..
T Consensus 212 ~~~nl~i~~~a~V~rI~~~~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~SGIG~ 274 (560)
T PRK02106 212 KRPNLTIVTHALTDRILFEGKRAVGVEYERGGGRETARARREVILSAGAINSPQLLQLSGIGP 274 (560)
T ss_pred CCCCcEEEcCCEEEEEEEeCCeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhhcCCCC
Confidence 35679999999999999876543 2443 333 245789999999998 899998888763
No 130
>PRK07233 hypothetical protein; Provisional
Probab=99.15 E-value=1.6e-09 Score=108.44 Aligned_cols=56 Identities=23% Similarity=0.230 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcC
Q psy7710 204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ 259 (473)
Q Consensus 204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~ 259 (473)
..+.+.|.+.+++.|++|+++++|++|+.+++++.+.+.++..++||.||+|+...
T Consensus 198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~ 253 (434)
T PRK07233 198 ATLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPP 253 (434)
T ss_pred HHHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHH
Confidence 56889999999999999999999999998877765444455589999999999875
No 131
>PRK06996 hypothetical protein; Provisional
Probab=99.14 E-value=5.5e-10 Score=110.23 Aligned_cols=72 Identities=13% Similarity=0.137 Sum_probs=58.0
Q ss_pred ceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCC---cEEEcCEEEEcCCcChHHHHHhcCCCC
Q psy7710 200 IVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQG---DHLESSYALVCAGLQADEMALKSGCSL 271 (473)
Q Consensus 200 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g---~~i~ad~VV~aaG~~s~~l~~~~g~~~ 271 (473)
.++...+.+.|.+.+++.|++++++++++++..+++++.++..++ ++++||.||.|.|..+....+.+++..
T Consensus 111 ~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~~~~~~ 185 (398)
T PRK06996 111 VVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGGLFHDQKADAGDSA 185 (398)
T ss_pred EEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCCCchHHHHHcCCCc
Confidence 355677889999999999999999999999988888888876643 589999999999975334556666653
No 132
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.13 E-value=2.3e-09 Score=105.53 Aligned_cols=69 Identities=12% Similarity=0.193 Sum_probs=50.2
Q ss_pred ceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEE---cCCeEEEE--cCC-----C--cEEEcCEEEEcCCcChHHHHHhc
Q psy7710 200 IVDWGLVTRVMGEEFCELGGEIRLNQQVESFKE---NPESVTIS--TKQ-----G--DHLESSYALVCAGLQADEMALKS 267 (473)
Q Consensus 200 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~---~~~~v~v~--~~~-----g--~~i~ad~VV~aaG~~s~~l~~~~ 267 (473)
.++-..+-+.|.+.+.+.|++++.++ +.++.. .++.+.|+ ..+ | .+++|+.||.|+|..| .+.+.+
T Consensus 89 ~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S-~v~~~~ 166 (398)
T TIGR02028 89 MLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS-RVAKEI 166 (398)
T ss_pred eeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch-HHHHHh
Confidence 35667788889999999999998775 767653 23344443 221 2 4799999999999998 677888
Q ss_pred CCC
Q psy7710 268 GCS 270 (473)
Q Consensus 268 g~~ 270 (473)
|+.
T Consensus 167 g~~ 169 (398)
T TIGR02028 167 DAG 169 (398)
T ss_pred CCC
Confidence 764
No 133
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.13 E-value=2.8e-09 Score=117.78 Aligned_cols=190 Identities=17% Similarity=0.151 Sum_probs=97.6
Q ss_pred CCCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEe-eccCCCchhHHHH-HHHhHHHHHH
Q psy7710 54 SPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHA-GIYYKPGTLKAKL-CVEGMNLAYE 131 (473)
Q Consensus 54 ~~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~-~~~~~~~~~~~~~-~~~~~~~~~~ 131 (473)
.+.++||||||+|.+|+++|+.+++. |.+|+||||.+..| ++|..+.|.+.. +.... ... ..++.+.+.+
T Consensus 406 ~t~~~DVvVVG~G~AGl~AAi~Aae~--Ga~VivlEK~~~~G-G~s~~s~ggi~~~~t~~q-----~~~gi~D~~~~~~~ 477 (1167)
T PTZ00306 406 GSLPARVIVVGGGLAGCSAAIEAASC--GAQVILLEKEAKLG-GNSAKATSGINGWGTRAQ-----AKQDVLDGGKFFER 477 (1167)
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHHC--CCcEEEEEccCCCC-CchhhcccccccCCchhh-----hhhcccccHHHHHH
Confidence 34578999999999999999999999 99999999996544 454444433322 11000 000 0011111111
Q ss_pred HHHhcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCC--ccce--eHHHHH
Q psy7710 132 YFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPN--TGIV--DWGLVT 207 (473)
Q Consensus 132 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~--~~~~--~~~~~~ 207 (473)
.....+.....+..+.-. -.+...+.++++.++|+ .+..+.. ..........+.+. ++.. ....+.
T Consensus 478 d~~~~~~~~~~d~~lv~~---~~~~s~e~idwL~~~Gv-~f~~~~~------~gg~~~~r~~~~~~~~~g~~~~~G~~i~ 547 (1167)
T PTZ00306 478 DTHLSGKGGHCDPGLVKT---LSVKSADAISWLSSLGV-PLTVLSQ------LGGASRKRCHRAPDKKDGTPVPIGFTIM 547 (1167)
T ss_pred HHHHhccCCCCCHHHHHH---HHHhhHHHHHHHHHcCC-Cceeeec------cCCCCCCceeecCcccCCCcCCcHHHHH
Confidence 100000000000000000 01222344555666666 3332110 00000000111111 1111 124566
Q ss_pred HHHHHHHHH---cCcEEEeCceEEEEEEcC-----C----eE-EE--EcC---CC--cEEEcCEEEEcCCcChH
Q psy7710 208 RVMGEEFCE---LGGEIRLNQQVESFKENP-----E----SV-TI--STK---QG--DHLESSYALVCAGLQAD 261 (473)
Q Consensus 208 ~~l~~~~~~---~Gv~i~~~~~V~~i~~~~-----~----~v-~v--~~~---~g--~~i~ad~VV~aaG~~s~ 261 (473)
..|.+.+++ .|++|+++++++++..++ + +| .| +.. +| ..++|+.||+|||++..
T Consensus 548 ~~l~~~~~~~~~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~~ 621 (1167)
T PTZ00306 548 RTLEDHIRTKLSGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFSN 621 (1167)
T ss_pred HHHHHHHHhhccCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCccc
Confidence 777777665 499999999999999763 1 33 23 333 45 35889999999999954
No 134
>PRK07045 putative monooxygenase; Reviewed
Probab=99.13 E-value=1.8e-09 Score=106.39 Aligned_cols=67 Identities=7% Similarity=0.198 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHH-cCcEEEeCceEEEEEEcCCe--EEEEcCCCcEEEcCEEEEcCCcChHHHHHh-cCCC
Q psy7710 203 WGLVTRVMGEEFCE-LGGEIRLNQQVESFKENPES--VTISTKQGDHLESSYALVCAGLQADEMALK-SGCS 270 (473)
Q Consensus 203 ~~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~--v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~-~g~~ 270 (473)
-..+.+.|.+.+.+ .|++++++++|+++..++++ +.|++++|+++++|.||.|.|.+| .+.+. ++++
T Consensus 105 r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S-~vR~~~~~~~ 175 (388)
T PRK07045 105 CEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARS-MIRDDVLRMP 175 (388)
T ss_pred HHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCCh-HHHHHhhCCC
Confidence 34577778777754 58999999999999986544 467888888899999999999998 34443 4443
No 135
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.13 E-value=6.1e-10 Score=114.14 Aligned_cols=48 Identities=33% Similarity=0.480 Sum_probs=38.9
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC--cccCcccCCCcceE
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK--ELGMHQTGHNSGVV 106 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~--~~g~~~s~~~~g~~ 106 (473)
.++||+|||+|.+|+++|+.++++ |.+|+||||.+ ..| +++..+.|.+
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~--G~~VivlEK~~~~~~G-G~s~~s~Gg~ 52 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADA--GKRVLLLDQENEANLG-GQAFWSLGGL 52 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHC--CCeEEEEeCCCCCCCC-CceeccCCce
Confidence 568999999999999999999999 99999999986 344 4444444444
No 136
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.13 E-value=1.5e-09 Score=106.94 Aligned_cols=66 Identities=18% Similarity=0.305 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceEEEEEE-cCCeEEEEc-CCC--cEEEcCEEEEcCCcChHHHHHhcCCC
Q psy7710 204 GLVTRVMGEEFCELGGEIRLNQQVESFKE-NPESVTIST-KQG--DHLESSYALVCAGLQADEMALKSGCS 270 (473)
Q Consensus 204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~-~~~~v~v~~-~~g--~~i~ad~VV~aaG~~s~~l~~~~g~~ 270 (473)
..+.+.|.+.+.+.|++++++++|+++.. +++.+.|+. .+| .+++||.||-|.|.+| .+.+.++..
T Consensus 103 ~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~~S-~vR~~~~~~ 172 (392)
T PRK08243 103 TEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGFHG-VSRASIPAG 172 (392)
T ss_pred HHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCCCCC-chhhhcCcc
Confidence 45677788877888999999999999986 555555554 355 3689999999999998 566666543
No 137
>PRK12839 hypothetical protein; Provisional
Probab=99.13 E-value=5.3e-10 Score=114.42 Aligned_cols=61 Identities=16% Similarity=0.232 Sum_probs=46.6
Q ss_pred eeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEc-CCeE-E--EEcCCCc-EEE-cCEEEEcCCcChH
Q psy7710 201 VDWGLVTRVMGEEFCELGGEIRLNQQVESFKEN-PESV-T--ISTKQGD-HLE-SSYALVCAGLQAD 261 (473)
Q Consensus 201 ~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v-~--v~~~~g~-~i~-ad~VV~aaG~~s~ 261 (473)
+++..++..|.+.+++.|++|+++++|++|..+ ++++ . +...++. .+. ++.||+|||+++.
T Consensus 211 ~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~ 277 (572)
T PRK12839 211 VNGTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPN 277 (572)
T ss_pred ccHHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCccc
Confidence 467788999999999999999999999999864 3433 2 3444552 344 4899999999964
No 138
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.13 E-value=1.6e-09 Score=111.03 Aligned_cols=48 Identities=33% Similarity=0.402 Sum_probs=40.1
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceE
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVV 106 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~ 106 (473)
.++||+|||+|.+|+++|+.++++ |.+|+||||.+. .++++..+.|.+
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~~--G~~v~llEk~~~-~gG~~~~~~g~~ 53 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAHR--GLSTVVVEKAPH-YGGSTARSGGGV 53 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHC--CCCEEEEeCCCC-CCccccccCcee
Confidence 578999999999999999999999 999999999854 445555555544
No 139
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.12 E-value=7.3e-10 Score=112.88 Aligned_cols=65 Identities=25% Similarity=0.432 Sum_probs=54.5
Q ss_pred eEecCCccceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCe-EEEEcCCCcEEEcCEEEEcCCcC
Q psy7710 192 AIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPES-VTISTKQGDHLESSYALVCAGLQ 259 (473)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~-v~v~~~~g~~i~ad~VV~aaG~~ 259 (473)
+++.+.+|. ..+.+.|.+.++++|++|+++++|++|..++++ +.|++.+|++++||.||+|++..
T Consensus 210 g~~~~~gG~---~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~ 275 (502)
T TIGR02734 210 GVWFPRGGT---GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLH 275 (502)
T ss_pred eEEEcCCCH---HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHH
Confidence 455565554 678999999999999999999999999877665 56888888789999999999875
No 140
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.12 E-value=4.9e-09 Score=103.31 Aligned_cols=64 Identities=22% Similarity=0.364 Sum_probs=50.7
Q ss_pred HHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh-HHHHHhcCCCC
Q psy7710 207 TRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA-DEMALKSGCSL 271 (473)
Q Consensus 207 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s-~~l~~~~g~~~ 271 (473)
...+.+.+++.|++++++++|+++.. ++.+.+++.+|.++.||.||+|+|... ..|++.+|+..
T Consensus 189 ~~~l~~~l~~~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~~pn~~l~~~~gl~~ 253 (396)
T PRK09754 189 QRYLLQRHQQAGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGISANDQLAREANLDT 253 (396)
T ss_pred HHHHHHHHHHCCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCCChhhHHHHhcCCCc
Confidence 34466777889999999999999976 455667778887899999999999984 45777777653
No 141
>PRK05868 hypothetical protein; Validated
Probab=99.12 E-value=1e-09 Score=107.12 Aligned_cols=62 Identities=10% Similarity=0.178 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhc
Q psy7710 204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKS 267 (473)
Q Consensus 204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~ 267 (473)
..+.+.|.+. ...|++++++++|++++.+++++.|++.+|.+++||.||-|.|.+| .+.+.+
T Consensus 105 ~~L~~~l~~~-~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S-~vR~~~ 166 (372)
T PRK05868 105 DDLVELLYGA-TQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHS-NVRRLV 166 (372)
T ss_pred HHHHHHHHHh-ccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCc-hHHHHh
Confidence 4455544433 3468999999999999988888999888888899999999999998 455544
No 142
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.12 E-value=5.9e-09 Score=102.15 Aligned_cols=65 Identities=17% Similarity=0.393 Sum_probs=53.9
Q ss_pred HHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh-HHHHHhcCCCC
Q psy7710 207 TRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA-DEMALKSGCSL 271 (473)
Q Consensus 207 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s-~~l~~~~g~~~ 271 (473)
...+.+.+++.|++++++++|+++..+++.+.+++.+|.++.+|.||+|+|... ..+++.+|+..
T Consensus 186 ~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~gl~~ 251 (377)
T PRK04965 186 SSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNTALARRAGLAV 251 (377)
T ss_pred HHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcchHHHHHCCCCc
Confidence 344667788899999999999999887777778888888899999999999884 46888888764
No 143
>PRK07236 hypothetical protein; Provisional
Probab=99.12 E-value=1.6e-09 Score=106.66 Aligned_cols=60 Identities=13% Similarity=0.239 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhc
Q psy7710 205 LVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKS 267 (473)
Q Consensus 205 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~ 267 (473)
.+.+.|.+.+ .+++++++++|+++..+++++.|++.+|.+++||.||.|.|.+|. +.+.+
T Consensus 101 ~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~-vR~~l 160 (386)
T PRK07236 101 VLYRALRAAF--PAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRST-VRAQL 160 (386)
T ss_pred HHHHHHHHhC--CCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCch-HHHHh
Confidence 3445554433 356899999999999888888888888889999999999999984 44444
No 144
>PLN02661 Putative thiazole synthesis
Probab=99.11 E-value=2.1e-09 Score=100.79 Aligned_cols=42 Identities=38% Similarity=0.543 Sum_probs=35.7
Q ss_pred CCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCc
Q psy7710 55 PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMH 97 (473)
Q Consensus 55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~ 97 (473)
..++||+|||||++|+++|++|+++ +|++|+||||...+|++
T Consensus 90 ~~~~DVlIVGaG~AGl~AA~~La~~-~g~kV~viEk~~~~GGG 131 (357)
T PLN02661 90 YADTDVVIVGAGSAGLSCAYELSKN-PNVKVAIIEQSVSPGGG 131 (357)
T ss_pred cccCCEEEECCHHHHHHHHHHHHHc-CCCeEEEEecCcccccc
Confidence 3468999999999999999999974 27999999998666543
No 145
>PLN02985 squalene monooxygenase
Probab=99.11 E-value=3.9e-09 Score=106.66 Aligned_cols=69 Identities=16% Similarity=0.212 Sum_probs=49.0
Q ss_pred ceeHHHHHHHHHHHHHHc-CcEEEeCceEEEEEEcCCe---EEEEcCCCc--EEEcCEEEEcCCcChHHHHHhcCCC
Q psy7710 200 IVDWGLVTRVMGEEFCEL-GGEIRLNQQVESFKENPES---VTISTKQGD--HLESSYALVCAGLQADEMALKSGCS 270 (473)
Q Consensus 200 ~~~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~---v~v~~~~g~--~i~ad~VV~aaG~~s~~l~~~~g~~ 270 (473)
.++...+.+.|.+.+.+. |++++.+ +|+++..+++. +.+.+.+|+ +++||.||.|.|.+| .+.+.++..
T Consensus 143 ~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S-~vR~~l~~~ 217 (514)
T PLN02985 143 SFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEKGVIKGVTYKNSAGEETTALAPLTVVCDGCYS-NLRRSLNDN 217 (514)
T ss_pred eeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcCCEEEEEEEEcCCCCEEEEECCEEEECCCCch-HHHHHhccC
Confidence 345567888899888776 6888755 57777665553 334445663 467999999999998 577777654
No 146
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.11 E-value=2.1e-09 Score=108.30 Aligned_cols=57 Identities=19% Similarity=0.341 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710 204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA 260 (473)
Q Consensus 204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s 260 (473)
..+...+.+.++++|++++++++|+++..+++++.+++.+|.++++|.||+|+|...
T Consensus 216 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p 272 (461)
T PRK05249 216 DEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTG 272 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCc
Confidence 456778888899999999999999999877677777777777899999999999874
No 147
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.11 E-value=2e-09 Score=110.89 Aligned_cols=44 Identities=23% Similarity=0.210 Sum_probs=36.2
Q ss_pred EEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcce
Q psy7710 60 VVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGV 105 (473)
Q Consensus 60 VvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~ 105 (473)
|+|||+|++|++||+.+++. |.+|+||||.+.++++++..+.|.
T Consensus 1 VlVVG~G~AGl~AAl~Aae~--G~~VilleK~~~~~~g~s~~a~Gg 44 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAEL--GYHVKLFSYVDAPRRAHSIAAQGG 44 (603)
T ss_pred CEEECccHHHHHHHHHHHHc--CCCEEEEEecCCCCCccchhhhhh
Confidence 69999999999999999999 999999999854665555544443
No 148
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.10 E-value=6.8e-10 Score=97.52 Aligned_cols=156 Identities=17% Similarity=0.198 Sum_probs=89.5
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccC-CCcc-eEEeeccCCCchhHHHHHHHhHHHHHHHHHh
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG-HNSG-VVHAGIYYKPGTLKAKLCVEGMNLAYEYFDK 135 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~-~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (473)
.+|+|||+||+|+++|+.|+++ |.+|+|+||+..+||+..+ +..+ .+.-|..|.
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~a--G~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYf---------------------- 57 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREA--GREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYF---------------------- 57 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhc--CcEEEEEEcCCCcccchheeccCCccccccceee----------------------
Confidence 3699999999999999999999 9999999999888876433 2211 111111110
Q ss_pred cCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHh----hcCCcccceeEecCCccceeHHHHHHHHH
Q psy7710 136 RNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKT----IEPYCKGVKAIHSPNTGIVDWGLVTRVMG 211 (473)
Q Consensus 136 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~----~~p~~~~~~~~~~~~~~~~~~~~~~~~l~ 211 (473)
. ..-+.+.+..+.+.+.|+ ++.....-... ..|.-. -.| ++-+. =+..|.
T Consensus 58 -------------k--~~~~~F~~~Ve~~~~~gl--V~~W~~~~~~~~~~~~~~~~d-----~~p---yvg~p-gmsala 111 (331)
T COG3380 58 -------------K--PRDELFLRAVEALRDDGL--VDVWTPAVWTFTGDGSPPRGD-----EDP---YVGEP-GMSALA 111 (331)
T ss_pred -------------c--CCchHHHHHHHHHHhCCc--eeeccccccccccCCCCCCCC-----CCc---cccCc-chHHHH
Confidence 0 011223333344444443 11111100000 000000 000 11111 123344
Q ss_pred HHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCC-cEEEcCEEEEcCCcC-hHHHH
Q psy7710 212 EEFCELGGEIRLNQQVESFKENPESVTISTKQG-DHLESSYALVCAGLQ-ADEMA 264 (473)
Q Consensus 212 ~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g-~~i~ad~VV~aaG~~-s~~l~ 264 (473)
+.+ ....+|+++++|+.+...++.|++++++| ....+|.||++.-+- +..|+
T Consensus 112 k~L-AtdL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LL 165 (331)
T COG3380 112 KFL-ATDLTVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLAIPAPQTATLL 165 (331)
T ss_pred HHH-hccchhhhhhhhhhheecCCeeEEEecCCCcccccceEEEecCCCcchhhc
Confidence 433 34678899999999999999999999766 467899999998654 44444
No 149
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.09 E-value=7.2e-09 Score=105.81 Aligned_cols=176 Identities=13% Similarity=0.096 Sum_probs=94.7
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccC--CCchhHHHHHHHh-----HHH
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYY--KPGTLKAKLCVEG-----MNL 128 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~--~~~~~~~~~~~~~-----~~~ 128 (473)
.++||+|||+|++|+++|+.+++. .+|+||||.. ..+++|..+.|.+...... .++.........+ .+.
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~---~~VilveK~~-~~~g~t~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~ 82 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH---RRVAVLSKGP-LSEGSTFYAQGGIAAVLDETDSIESHVEDTLIAGAGLCDEDA 82 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC---CCEEEEeccC-CCCCChhhccCCeeeccCCCccHHHHHHHHHHHccCCCCHHH
Confidence 568999999999999999999874 6999999984 5555666665554432211 1111100000000 001
Q ss_pred HHHHHHhcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCH-H---HHH-hhcCCcccceeEecCCccceeH
Q psy7710 129 AYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSA-E---EIK-TIEPYCKGVKAIHSPNTGIVDW 203 (473)
Q Consensus 129 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~-~---~~~-~~~p~~~~~~~~~~~~~~~~~~ 203 (473)
.+.+ .+...+.++++.++|+ .+..... . ... ..+.... ..-.+... ....
T Consensus 83 v~~~---------------------~~~~~~~i~~L~~~Gv-~f~~~~~~~g~~~~~~~~~gg~~-~~r~~~~~--~~~G 137 (536)
T PRK09077 83 VRFI---------------------AENAREAVQWLIDQGV-PFTTDEQANGEEGYHLTREGGHS-HRRILHAA--DATG 137 (536)
T ss_pred HHHH---------------------HHHHHHHHHHHHHcCC-ccccCCCCCccccccccCCCCcc-CCceEecC--CCCH
Confidence 1111 1222334445555665 2221110 0 000 0000000 00011111 1123
Q ss_pred HHHHHHHHHHHHHc-CcEEEeCceEEEEEEcC------CeE-EEE--c-CCC--cEEEcCEEEEcCCcCh
Q psy7710 204 GLVTRVMGEEFCEL-GGEIRLNQQVESFKENP------ESV-TIS--T-KQG--DHLESSYALVCAGLQA 260 (473)
Q Consensus 204 ~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~------~~v-~v~--~-~~g--~~i~ad~VV~aaG~~s 260 (473)
..+...|.+.+++. |++|++++.|.++..++ +.+ .|. . .+| ..+.|+.||+|+|+++
T Consensus 138 ~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~ 207 (536)
T PRK09077 138 KAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGAS 207 (536)
T ss_pred HHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCC
Confidence 46777788877765 89999999999998643 433 233 2 344 3588999999999976
No 150
>PRK11445 putative oxidoreductase; Provisional
Probab=99.09 E-value=4.9e-09 Score=101.56 Aligned_cols=67 Identities=10% Similarity=0.044 Sum_probs=51.1
Q ss_pred eeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEc-CCCc--EEEcCEEEEcCCcChHHHHHhcCC
Q psy7710 201 VDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTIST-KQGD--HLESSYALVCAGLQADEMALKSGC 269 (473)
Q Consensus 201 ~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~-~~g~--~i~ad~VV~aaG~~s~~l~~~~g~ 269 (473)
++...+-+.|.+. .+.|+++++++.|+++..+++++.|.+ .+|. +++||.||.|+|..| .+.+.++.
T Consensus 96 i~R~~~~~~L~~~-~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S-~vr~~l~~ 165 (351)
T PRK11445 96 IDRHKFDLWLKSL-IPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANS-MVRRHLYP 165 (351)
T ss_pred ccHHHHHHHHHHH-HhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCc-HHhHHhcC
Confidence 5556666666664 467899999999999998888887764 4553 689999999999998 45555543
No 151
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.1e-09 Score=102.18 Aligned_cols=58 Identities=21% Similarity=0.219 Sum_probs=48.6
Q ss_pred eHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChH
Q psy7710 202 DWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD 261 (473)
Q Consensus 202 ~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~ 261 (473)
....+.+.+.+.++..|+++.. ..|.++...++.+.|+|+++ +++|+.||+|+|....
T Consensus 59 ~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~-~~~ak~vIiAtG~~~~ 116 (305)
T COG0492 59 LGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKG-TYEAKAVIIATGAGAR 116 (305)
T ss_pred chHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCceEEEEECCC-eEEEeEEEECcCCccc
Confidence 3466788888899899999986 77888877665788999999 5999999999999874
No 152
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.07 E-value=2.4e-09 Score=105.47 Aligned_cols=57 Identities=12% Similarity=0.198 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCC-e-EEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710 204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPE-S-VTISTKQGDHLESSYALVCAGLQA 260 (473)
Q Consensus 204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~-~-v~v~~~~g~~i~ad~VV~aaG~~s 260 (473)
..+.+.+.+.++..|++++++++|++|..+++ . +.|++.+|++++|+.||.....+.
T Consensus 232 g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p 290 (443)
T PTZ00363 232 GGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFP 290 (443)
T ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECccccc
Confidence 56888899999999999999999999987753 3 568888888999999998776664
No 153
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.07 E-value=1.3e-09 Score=109.38 Aligned_cols=65 Identities=14% Similarity=0.176 Sum_probs=51.4
Q ss_pred EecCCccceeHHHHHHHHHHHHHHc-CcEEEeCceEEEEEEc-C-CeEEEEcCCCcEEEcCEEEEcCCcC
Q psy7710 193 IHSPNTGIVDWGLVTRVMGEEFCEL-GGEIRLNQQVESFKEN-P-ESVTISTKQGDHLESSYALVCAGLQ 259 (473)
Q Consensus 193 ~~~~~~~~~~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~-~-~~v~v~~~~g~~i~ad~VV~aaG~~ 259 (473)
++.+. +.+|+..+...+.+.+++. |++++ ...|+++..+ + ..+.|.+.+|..+.|+.||+|+|.|
T Consensus 86 V~~~R-aQVDr~~y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtf 153 (617)
T TIGR00136 86 VRATR-AQIDKVLYRKAMRNALENQPNLSLF-QGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTF 153 (617)
T ss_pred ccccH-HhCCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCcc
Confidence 34444 6789999999999999887 77876 4567777654 3 4456888888789999999999999
No 154
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.07 E-value=9.3e-11 Score=116.32 Aligned_cols=155 Identities=23% Similarity=0.246 Sum_probs=36.4
Q ss_pred cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHhcCC
Q psy7710 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDKRNI 138 (473)
Q Consensus 59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (473)
||||||||++|++||+.+++. |.+|+|||+.+.+|+..+......+... .. .. ......+.++.+...
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~--G~~VlLiE~~~~lGG~~t~~~~~~~~~~-----~~-~~---~~~~gi~~e~~~~~~- 68 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARA--GAKVLLIEKGGFLGGMATSGGVSPFDGN-----HD-ED---QVIGGIFREFLNRLR- 68 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHT--TS-EEEE-SSSSSTGGGGGSSS-EETTE-----EH-HH---HHHHHHHHHHHHST--
T ss_pred CEEEECccHHHHHHHHHHHHC--CCEEEEEECCccCCCcceECCcCChhhc-----ch-hh---ccCCCHHHHHHHHHh-
Confidence 899999999999999999999 9999999999877765544332222110 00 00 000111112211110
Q ss_pred CCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHHHHcC
Q psy7710 139 PYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELG 218 (473)
Q Consensus 139 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G 218 (473)
..+. . ... .. . .| .....++|..+...+.+.+++.|
T Consensus 69 ---------------------------~~~~--~----~~~-----~~-~----~~-~~~~~~~~~~~~~~l~~~l~e~g 104 (428)
T PF12831_consen 69 ---------------------------ARGG--Y----PQE-----DR-Y----GW-VSNVPFDPEVFKAVLDEMLAEAG 104 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------hhcc--c----ccc-----cc-c----cc-ccccccccccccccccccccccc
Confidence 0000 0 000 00 0 00 00013455556666777778889
Q ss_pred cEEEeCceEEEEEEcCCeEE-EE--cCCC-cEEEcCEEEEcCCcChHHHHHhcCCCC
Q psy7710 219 GEIRLNQQVESFKENPESVT-IS--TKQG-DHLESSYALVCAGLQADEMALKSGCSL 271 (473)
Q Consensus 219 v~i~~~~~V~~i~~~~~~v~-v~--~~~g-~~i~ad~VV~aaG~~s~~l~~~~g~~~ 271 (473)
++|++++.|.++..+++++. |. +.+| .+++||.||-|||- ..|+..+|.+.
T Consensus 105 v~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~--g~l~~~aG~~~ 159 (428)
T PF12831_consen 105 VEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD--GDLAALAGAPY 159 (428)
T ss_dssp ---------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc--ccccccccccc
Confidence 99999999999998875543 43 3334 57999999999994 36777777764
No 155
>PRK06116 glutathione reductase; Validated
Probab=99.06 E-value=2.1e-09 Score=107.89 Aligned_cols=57 Identities=16% Similarity=0.267 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCe-EEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710 204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPES-VTISTKQGDHLESSYALVCAGLQA 260 (473)
Q Consensus 204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~-v~v~~~~g~~i~ad~VV~aaG~~s 260 (473)
..+...+.+.+++.|++++++++|.++..++++ +.+++.+|.++++|.||+|+|...
T Consensus 208 ~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p 265 (450)
T PRK06116 208 PDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREP 265 (450)
T ss_pred HHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCc
Confidence 456778888899999999999999999876544 677777777899999999999863
No 156
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.06 E-value=1.9e-09 Score=110.51 Aligned_cols=112 Identities=19% Similarity=0.306 Sum_probs=80.8
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHh
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDK 135 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (473)
..+||+|||||++|+++|..|+++ |++|+|+|++ .+|+...... ..
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~--g~~V~liE~~-~~GG~~~~~~------~i------------------------- 48 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRA--KLDTLIIEKD-DFGGQITITS------EV------------------------- 48 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecC-CCCceEEecc------cc-------------------------
Confidence 468999999999999999999999 9999999997 5543211000 00
Q ss_pred cCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHHH
Q psy7710 136 RNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFC 215 (473)
Q Consensus 136 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 215 (473)
..++... ...+..+.+.+.+.++
T Consensus 49 -------------------------------~~~pg~~--------------------------~~~~~~l~~~l~~~~~ 71 (555)
T TIGR03143 49 -------------------------------VNYPGIL--------------------------NTTGPELMQEMRQQAQ 71 (555)
T ss_pred -------------------------------ccCCCCc--------------------------CCCHHHHHHHHHHHHH
Confidence 0000000 1122456667777888
Q ss_pred HcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710 216 ELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA 260 (473)
Q Consensus 216 ~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s 260 (473)
+.|++++ +++|+.+..+++.+.|.+.++ .+.++.||+|+|++.
T Consensus 72 ~~gv~~~-~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p 114 (555)
T TIGR03143 72 DFGVKFL-QAEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASP 114 (555)
T ss_pred HcCCEEe-ccEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCcc
Confidence 8899985 788999988776677888777 789999999999975
No 157
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.05 E-value=1.6e-09 Score=103.26 Aligned_cols=58 Identities=22% Similarity=0.286 Sum_probs=47.3
Q ss_pred ceeHHHHHHHHHHHHHH-cCcEEEeCceEEEEEEcCCeE-EEEcCCCcEEEcCEEEEcCCc
Q psy7710 200 IVDWGLVTRVMGEEFCE-LGGEIRLNQQVESFKENPESV-TISTKQGDHLESSYALVCAGL 258 (473)
Q Consensus 200 ~~~~~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~v-~v~~~~g~~i~ad~VV~aaG~ 258 (473)
.+|-..|.+.+.+.+++ .+++|+ +.+|++|..+++.+ .|.+.+|..+.+|.||+|||.
T Consensus 91 qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 91 QVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp EE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred hccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 57778899999999987 577885 78999999887765 599999989999999999999
No 158
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.04 E-value=8.8e-09 Score=102.67 Aligned_cols=45 Identities=22% Similarity=0.268 Sum_probs=38.6
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcC--CCCeEEEEeccCcccCcccC
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNY--PKMKICLVEKEKELGMHQTG 100 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~--~G~~V~viE~~~~~g~~~s~ 100 (473)
...+|+|||||++||++|++|++.+ +|.+|+|+|+.+.+||...+
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~ 67 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDG 67 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccC
Confidence 3578999999999999999999864 47899999999888877543
No 159
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.03 E-value=3.3e-09 Score=100.84 Aligned_cols=44 Identities=30% Similarity=0.534 Sum_probs=40.2
Q ss_pred CCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccC
Q psy7710 55 PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG 100 (473)
Q Consensus 55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~ 100 (473)
...+||+|||+|++||++|++|.+. |.+|+|+|.++++|+++..
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~ka--G~~v~ilEar~r~GGR~~t 48 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKA--GYQVQILEARDRVGGRSLT 48 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhc--CcEEEEEeccCCcCceeEE
Confidence 3678999999999999999999999 9999999999999988654
No 160
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.03 E-value=3.8e-09 Score=107.58 Aligned_cols=58 Identities=12% Similarity=0.143 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710 203 WGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA 260 (473)
Q Consensus 203 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s 260 (473)
+..+.+.+.+.+++.|++++++++|.++..+++.+.|++.+|.++++|.||+|+|...
T Consensus 265 ~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~ 322 (517)
T PRK15317 265 GPKLAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARW 322 (517)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCc
Confidence 3557778888899999999999999999988778888887777899999999999864
No 161
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=99.02 E-value=2.7e-09 Score=106.41 Aligned_cols=184 Identities=15% Similarity=0.107 Sum_probs=95.3
Q ss_pred EEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc-CcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHhcCCCC
Q psy7710 62 VVGGGIVGVATARELKLNYPKMKICLVEKEKELG-MHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDKRNIPY 140 (473)
Q Consensus 62 IIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g-~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (473)
|||+|++|+++|++++++ |.+|+||||.+... ++.+..+.+.... .........-.....+.+.++.+..+...
T Consensus 1 VVG~G~AGl~AA~~Aa~~--Ga~V~vlEK~~~~~~Gg~s~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRA--GASVLLLEAAPRARRGGNARHGRNIRVA---HDIPTDFQRDSYPAEEFERDLAPVTGGRT 75 (432)
T ss_pred CCcccHHHHHHHHHHHhC--CCcEEEEeCCCCCcCCcCcccccchhhc---ccchhhhhhhhccHHHHHHHHHHhhCCCC
Confidence 799999999999999999 99999999985322 2333222111110 00000000000011122222222111000
Q ss_pred cccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHHHHcCcE
Q psy7710 141 KKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGE 220 (473)
Q Consensus 141 ~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~ 220 (473)
+. ..+.. -.+...+.++++.++|+ .++..... ..|... ...+... ....+++.|.+.+++.|++
T Consensus 76 d~-~l~~~----~~~~s~~~i~wl~~~Gv-~f~~~~~g----~~~~~~--~~~~~~~----~g~~l~~~L~~~a~~~Gv~ 139 (432)
T TIGR02485 76 NE-SLSRL----GIGRGSRDLRWAFAHGV-HLQPPAAG----NLPYSR--RTAFLRG----GGKALTNALYSSAERLGVE 139 (432)
T ss_pred CH-HHHHH----HHhcchhHHHHHHhCCc-eeeecCCC----CccccC--ceeeecC----CHHHHHHHHHHHHHHcCCE
Confidence 00 00000 01112334555666666 33221100 001000 0111111 2356888999999999999
Q ss_pred EEeCceEEEEEEc--CCeE-EEEcC-CCcEEEcCEEEEcCCcCh--HHHHHh
Q psy7710 221 IRLNQQVESFKEN--PESV-TISTK-QGDHLESSYALVCAGLQA--DEMALK 266 (473)
Q Consensus 221 i~~~~~V~~i~~~--~~~v-~v~~~-~g~~i~ad~VV~aaG~~s--~~l~~~ 266 (473)
|+++++|++|..+ ++.+ .|.+. ++..++|+.||+|+|.++ .++.+.
T Consensus 140 i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~~~~~ 191 (432)
T TIGR02485 140 IRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRDWLRK 191 (432)
T ss_pred EEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHHHHHh
Confidence 9999999999876 3433 34433 335799999999999884 355543
No 162
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.02 E-value=9.4e-09 Score=102.90 Aligned_cols=45 Identities=31% Similarity=0.420 Sum_probs=37.6
Q ss_pred cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceE
Q psy7710 57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVV 106 (473)
Q Consensus 57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~ 106 (473)
+|||+|||||++|+++|+.++++ |++|+|+|+. .+||. +.+.|++
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~--G~~V~lie~~-~~GG~--c~~~gci 46 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANH--GAKVAIAEEP-RVGGT--CVIRGCV 46 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhC--CCcEEEEecC-ccCce--eecCCcC
Confidence 58999999999999999999999 9999999996 66643 3445543
No 163
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.02 E-value=5e-09 Score=104.08 Aligned_cols=59 Identities=12% Similarity=0.205 Sum_probs=48.8
Q ss_pred eeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChH
Q psy7710 201 VDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD 261 (473)
Q Consensus 201 ~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~ 261 (473)
++...+.+.|.+.+. +..++++++|++|..++++|.|.+.+|.++++|.||.|.|.+|.
T Consensus 102 i~R~~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 102 VHRADFLDALLKHLP--EGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSA 160 (414)
T ss_pred CCHHHHHHHHHHhCC--CceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccHH
Confidence 455667777777663 35678999999999888889898888878999999999999984
No 164
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.02 E-value=9.1e-09 Score=101.15 Aligned_cols=65 Identities=14% Similarity=0.176 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceEEEEEE-cCCeEEEEcC-CCc--EEEcCEEEEcCCcChHHHHHhcCC
Q psy7710 204 GLVTRVMGEEFCELGGEIRLNQQVESFKE-NPESVTISTK-QGD--HLESSYALVCAGLQADEMALKSGC 269 (473)
Q Consensus 204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~-~~~~v~v~~~-~g~--~i~ad~VV~aaG~~s~~l~~~~g~ 269 (473)
..+.+.|.+.+.+.|+.++++++++.+.. +++.+.|+.. +|. +++||.||-|.|.+| .+.+.++.
T Consensus 103 ~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG~~S-~VR~~l~~ 171 (390)
T TIGR02360 103 TEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDGFHG-VSRASIPA 171 (390)
T ss_pred HHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCCCch-hhHHhcCc
Confidence 45677788888888999999998887765 4444555543 553 689999999999998 46665543
No 165
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.01 E-value=3.6e-09 Score=104.58 Aligned_cols=68 Identities=18% Similarity=0.326 Sum_probs=53.1
Q ss_pred eeHHHHHHHHHHHHHH-cCcEEEeCceEEEEEEcCCeEEEEc---CCCcEEEcCEEEEcCCcChHHHHHhcCC
Q psy7710 201 VDWGLVTRVMGEEFCE-LGGEIRLNQQVESFKENPESVTIST---KQGDHLESSYALVCAGLQADEMALKSGC 269 (473)
Q Consensus 201 ~~~~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~v~v~~---~~g~~i~ad~VV~aaG~~s~~l~~~~g~ 269 (473)
++-..+.+.|.+.+.+ .|++++++++|+++..+++++.+++ .++++++||.||-|.|.+| .+.+.++.
T Consensus 104 i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S-~vR~~~~~ 175 (400)
T PRK06475 104 CHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWS-MLRAKAGF 175 (400)
T ss_pred ECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccH-hHHhhcCC
Confidence 4456788888888866 4899999999999998877776654 3345799999999999998 45565554
No 166
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=99.01 E-value=1.3e-08 Score=104.45 Aligned_cols=175 Identities=14% Similarity=0.134 Sum_probs=90.1
Q ss_pred cEEEEcCChHHHHHHHHHH----hcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHH
Q psy7710 59 DVVVVGGGIVGVATARELK----LNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFD 134 (473)
Q Consensus 59 dVvIIGaGi~Gl~~A~~L~----~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (473)
||+|||+|++|++||+.++ ++ |.+|+|+||.. +++.++ .+.|....+...... ....+.+.+.+...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~--G~~VilieK~~-~~~s~s-~A~G~~gi~~~~~~~-----~g~Ds~e~~~~d~~ 71 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKK--GLKIVLVEKAN-LERSGA-VAQGLSAINTYLGTR-----FGENNAEDYVRYVR 71 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhC--CCeEEEEEccC-CCCCCc-cccccchhhhhhhcc-----cCCCCHHHHHHHHH
Confidence 7999999999999999998 67 89999999984 442222 344422111000000 00001111111111
Q ss_pred hcCCCCcccCeEEEEeCc----ChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHH
Q psy7710 135 KRNIPYKKCGKLIVALNE----QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVM 210 (473)
Q Consensus 135 ~~~~~~~~~g~l~~~~~~----~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l 210 (473)
..+.. +...+ -.+...+.++++.++|+ .+....... ... ..+...... ....+.+.+
T Consensus 72 ~~~~g--------l~d~~lV~~lv~~s~~~i~~L~~~Gv-~F~~~~~~G--~~~----~~g~~~~~~----gG~~~~r~l 132 (614)
T TIGR02061 72 TDLMG--------LVREDLIFDMARHVDDSVHLFEEWGL-PLWIKPEDG--KYV----REGRWQIMI----HGESYKPIV 132 (614)
T ss_pred HhcCC--------CCcHHHHHHHHHHHHHHHHHHHHcCC-CceecCCCC--ccc----cCCCcccCc----CchhHHHHH
Confidence 10000 00000 12233455566666776 333210000 000 000000001 123445556
Q ss_pred HHHHHHcCcEEEeCceEEEEEEcC---CeE-EEE---cCCC--cEEEcCEEEEcCCcChH
Q psy7710 211 GEEFCELGGEIRLNQQVESFKENP---ESV-TIS---TKQG--DHLESSYALVCAGLQAD 261 (473)
Q Consensus 211 ~~~~~~~Gv~i~~~~~V~~i~~~~---~~v-~v~---~~~g--~~i~ad~VV~aaG~~s~ 261 (473)
...+++.+++++.++.|+++..++ +.+ .|. ..+| ..+.|+.||+|||+++.
T Consensus 133 ~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 192 (614)
T TIGR02061 133 AEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAVN 192 (614)
T ss_pred HHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCcccc
Confidence 666667778999999999999754 333 332 2344 35789999999999864
No 167
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.00 E-value=4.1e-08 Score=101.90 Aligned_cols=70 Identities=16% Similarity=0.275 Sum_probs=52.6
Q ss_pred eeHHHHHHHHHHHHHHcCc--EEEeCceEEEEEEcC---CeEEEEcC------CC--cEEEcCEEEEcCCcChHHHHHhc
Q psy7710 201 VDWGLVTRVMGEEFCELGG--EIRLNQQVESFKENP---ESVTISTK------QG--DHLESSYALVCAGLQADEMALKS 267 (473)
Q Consensus 201 ~~~~~~~~~l~~~~~~~Gv--~i~~~~~V~~i~~~~---~~v~v~~~------~g--~~i~ad~VV~aaG~~s~~l~~~~ 267 (473)
++-..+.+.|.+.+.+.|. ++.++++|+++..++ ..|+|+.. +| ++++||+||-|.|+.| .+.+.+
T Consensus 138 l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S-~VR~~l 216 (634)
T PRK08294 138 VNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARS-RVRKAI 216 (634)
T ss_pred eCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCch-HHHHhc
Confidence 4445677788888887764 778899999998764 23555442 34 5799999999999998 678888
Q ss_pred CCCC
Q psy7710 268 GCSL 271 (473)
Q Consensus 268 g~~~ 271 (473)
|++.
T Consensus 217 gi~~ 220 (634)
T PRK08294 217 GREL 220 (634)
T ss_pred CCCc
Confidence 8765
No 168
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.00 E-value=1.8e-08 Score=101.44 Aligned_cols=47 Identities=28% Similarity=0.278 Sum_probs=38.6
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceE
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVV 106 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~ 106 (473)
.+|||+|||||++|+++|..|++. |++|+|||+.+.+|+. +.|.|++
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~--G~~V~lie~~~~~GG~--c~n~gci 49 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADL--GLETVCVERYSTLGGV--CLNVGCI 49 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCccccc--ccCCCcc
Confidence 469999999999999999999999 9999999987555533 3555543
No 169
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.99 E-value=4.6e-09 Score=105.14 Aligned_cols=57 Identities=19% Similarity=0.303 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChH
Q psy7710 204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD 261 (473)
Q Consensus 204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~ 261 (473)
..+...+.+.++++|++++++++|+++..+++.+.+.++++ ++.+|.||+|+|...+
T Consensus 199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~pn 255 (441)
T PRK08010 199 RDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQPA 255 (441)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCCcC
Confidence 56778888899999999999999999988777777777666 7899999999998853
No 170
>PLN02676 polyamine oxidase
Probab=98.99 E-value=1e-08 Score=103.21 Aligned_cols=56 Identities=21% Similarity=0.378 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHc------CcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcC
Q psy7710 204 GLVTRVMGEEFCEL------GGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ 259 (473)
Q Consensus 204 ~~~~~~l~~~~~~~------Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~ 259 (473)
..+.+.|.+.+.+. +.+|+++++|++|..++++|.|++.+|.+++||+||+|....
T Consensus 224 ~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~ 285 (487)
T PLN02676 224 ESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSLG 285 (487)
T ss_pred HHHHHHHHhhcccccccccCCCceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccChH
Confidence 45566666655332 367999999999999888999999999889999999999754
No 171
>PRK07538 hypothetical protein; Provisional
Probab=98.99 E-value=6.1e-09 Score=103.40 Aligned_cols=67 Identities=12% Similarity=0.218 Sum_probs=49.4
Q ss_pred eeHHHHHHHHHHHHHH-cCc-EEEeCceEEEEEEcCCeEEEEcCC-----CcEEEcCEEEEcCCcChHHHHHhcC
Q psy7710 201 VDWGLVTRVMGEEFCE-LGG-EIRLNQQVESFKENPESVTISTKQ-----GDHLESSYALVCAGLQADEMALKSG 268 (473)
Q Consensus 201 ~~~~~~~~~l~~~~~~-~Gv-~i~~~~~V~~i~~~~~~v~v~~~~-----g~~i~ad~VV~aaG~~s~~l~~~~g 268 (473)
++...+.+.|.+.+.+ .|. +|+++++|+++..+++++.+.+.+ +.+++||.||.|.|.+| .+.+.++
T Consensus 99 i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgADG~~S-~vR~~l~ 172 (413)
T PRK07538 99 IHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGADGIHS-AVRAQLY 172 (413)
T ss_pred EEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECCCCCH-HHhhhhc
Confidence 5566788888888765 464 699999999998776655444322 24899999999999998 4555554
No 172
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.98 E-value=1e-08 Score=103.51 Aligned_cols=54 Identities=11% Similarity=0.209 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcC
Q psy7710 204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ 259 (473)
Q Consensus 204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~ 259 (473)
..+.+.|.+.+.+ ++|+++++|++|..+++++.|++.+|..+.||.||+|+-..
T Consensus 226 ~~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p~~ 279 (463)
T PRK12416 226 STIIDRLEEVLTE--TVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAPHD 279 (463)
T ss_pred HHHHHHHHHhccc--ccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCCHH
Confidence 4566666666643 58999999999999888898888887789999999999644
No 173
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.97 E-value=9.1e-09 Score=105.34 Aligned_cols=66 Identities=17% Similarity=0.271 Sum_probs=49.7
Q ss_pred eeHHHHHHHHHHHHHHcCc-EEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCC
Q psy7710 201 VDWGLVTRVMGEEFCELGG-EIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGC 269 (473)
Q Consensus 201 ~~~~~~~~~l~~~~~~~Gv-~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~ 269 (473)
+.-..+.+.|.+.+ +. .++++++|+++..+++.+.|++.+|.++++|.||.|.|.+|..-...++.
T Consensus 191 I~R~~L~~~L~~al---g~~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aDlVVGADG~~S~vR~~l~g~ 257 (668)
T PLN02927 191 ISRMTLQQILARAV---GEDVIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGIWSKVRNNLFGR 257 (668)
T ss_pred EeHHHHHHHHHhhC---CCCEEEcCCEEEEEEEeCCEEEEEECCCCEEEcCEEEECCCCCcHHHHHhcCC
Confidence 44455666665543 33 46788999999988889999888887899999999999998544444453
No 174
>PRK14694 putative mercuric reductase; Provisional
Probab=98.97 E-value=2.2e-08 Score=100.91 Aligned_cols=56 Identities=21% Similarity=0.246 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710 204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA 260 (473)
Q Consensus 204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s 260 (473)
..+...+.+.+++.|+++++++.|+++..+++.+.+.++++ ++++|.||+|+|...
T Consensus 218 ~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~p 273 (468)
T PRK14694 218 PAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNAG-TLRAEQLLVATGRTP 273 (468)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCC-EEEeCEEEEccCCCC
Confidence 45778888999999999999999999987777667777666 799999999999884
No 175
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.97 E-value=1e-08 Score=104.30 Aligned_cols=57 Identities=12% Similarity=0.226 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710 204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA 260 (473)
Q Consensus 204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s 260 (473)
..+...+.+.+++.|++++++++|+++..+++.+.+++.+|..+.+|.+|+|+|...
T Consensus 267 ~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 267 SQLAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARW 323 (515)
T ss_pred HHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 456677888888889999999999999887777888887777899999999999864
No 176
>PRK07208 hypothetical protein; Provisional
Probab=98.97 E-value=2.6e-08 Score=101.01 Aligned_cols=56 Identities=18% Similarity=0.370 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeE-E-EEc--CCC--cEEEcCEEEEcCCcC
Q psy7710 204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESV-T-IST--KQG--DHLESSYALVCAGLQ 259 (473)
Q Consensus 204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v-~-v~~--~~g--~~i~ad~VV~aaG~~ 259 (473)
..+.+.|.+.+++.|++|+++++|++|..+++++ . +.. .+| ..+.||.||.|+..+
T Consensus 218 ~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~ 279 (479)
T PRK07208 218 GQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLR 279 (479)
T ss_pred chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHH
Confidence 5688889999999999999999999999887643 2 322 234 258899999999876
No 177
>PRK09897 hypothetical protein; Provisional
Probab=98.96 E-value=2.2e-08 Score=100.73 Aligned_cols=53 Identities=13% Similarity=0.036 Sum_probs=41.9
Q ss_pred HHHHHHHHHcC--cEEEeCceEEEEEEcCCeEEEEcCC-CcEEEcCEEEEcCCcCh
Q psy7710 208 RVMGEEFCELG--GEIRLNQQVESFKENPESVTISTKQ-GDHLESSYALVCAGLQA 260 (473)
Q Consensus 208 ~~l~~~~~~~G--v~i~~~~~V~~i~~~~~~v~v~~~~-g~~i~ad~VV~aaG~~s 260 (473)
..+.+.+.+.| ++++.+++|++|..+++++.|++.+ +..+.+|.||+|+|...
T Consensus 111 ~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh~~ 166 (534)
T PRK09897 111 LRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVW 166 (534)
T ss_pred HHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCCCC
Confidence 34455556666 7888899999999888888888755 45789999999999753
No 178
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.95 E-value=2.3e-08 Score=100.05 Aligned_cols=56 Identities=18% Similarity=0.178 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710 204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA 260 (473)
Q Consensus 204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s 260 (473)
..+...+.+.+++.|++++++++|+++..+++.+.+.++ +.++.+|.||+|+|...
T Consensus 198 ~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~-g~~i~~D~viva~G~~p 253 (438)
T PRK07251 198 PSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTE-DETYRFDALLYATGRKP 253 (438)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEEC-CeEEEcCEEEEeeCCCC
Confidence 456667778888999999999999999877666666554 45899999999999874
No 179
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.94 E-value=3.4e-08 Score=99.71 Aligned_cols=45 Identities=36% Similarity=0.479 Sum_probs=37.8
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcce
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGV 105 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~ 105 (473)
..|||+|||||++|+++|..|++. |++|+|+|+. .+||. +.+.|+
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~--G~~v~lie~~-~~GG~--c~~~gc 47 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQL--GLKTALVEKG-KLGGT--CLHKGC 47 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC--CCeEEEEEcc-CCCcc--eEcCCc
Confidence 579999999999999999999999 9999999997 66544 334444
No 180
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.94 E-value=5.3e-08 Score=98.20 Aligned_cols=57 Identities=25% Similarity=0.380 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCC--cEEEcCEEEEcCCcCh
Q psy7710 204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQG--DHLESSYALVCAGLQA 260 (473)
Q Consensus 204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g--~~i~ad~VV~aaG~~s 260 (473)
..+...+.+.+++.|++++++++|.++..+++.+.+++.+| .++.+|.||+|+|...
T Consensus 211 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p 269 (461)
T TIGR01350 211 AEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKP 269 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcc
Confidence 45677788889999999999999999988777777776666 4799999999999874
No 181
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.94 E-value=2e-08 Score=101.07 Aligned_cols=53 Identities=13% Similarity=0.187 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcC
Q psy7710 205 LVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ 259 (473)
Q Consensus 205 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~ 259 (473)
.+.+.+.+.+... +|+++++|++|..+++++.|.+.+|+++.||.||+|+...
T Consensus 222 ~l~~~l~~~l~~~--~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~ 274 (451)
T PRK11883 222 SLIEALEEKLPAG--TIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHP 274 (451)
T ss_pred HHHHHHHHhCcCC--eEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHH
Confidence 4455555544332 8999999999998888888888888789999999999765
No 182
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.93 E-value=2.2e-08 Score=101.79 Aligned_cols=56 Identities=11% Similarity=0.089 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeE-EEEcCCC-----cEEEcCEEEEcCCcC
Q psy7710 204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESV-TISTKQG-----DHLESSYALVCAGLQ 259 (473)
Q Consensus 204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v-~v~~~~g-----~~i~ad~VV~aaG~~ 259 (473)
..+.++|.+.++++|++|+++++|++|..+++.+ .|.+.++ +++.||.||.++...
T Consensus 232 ~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~ 293 (492)
T TIGR02733 232 QTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQ 293 (492)
T ss_pred HHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence 6789999999999999999999999999876642 2333222 478999999999875
No 183
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.93 E-value=3e-08 Score=99.24 Aligned_cols=38 Identities=42% Similarity=0.608 Sum_probs=34.4
Q ss_pred cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCc
Q psy7710 57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMH 97 (473)
Q Consensus 57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~ 97 (473)
+|||+|||||++|+++|..|++. |.+|+|+|+. .+||.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~--G~~V~liE~~-~~GG~ 39 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEH--GAKALLVEAK-KLGGT 39 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHC--CCcEEEeccc-ccccc
Confidence 58999999999999999999999 9999999997 56543
No 184
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.93 E-value=3.8e-08 Score=99.18 Aligned_cols=57 Identities=19% Similarity=0.420 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCC---cEEEcCEEEEcCCcCh
Q psy7710 204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQG---DHLESSYALVCAGLQA 260 (473)
Q Consensus 204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g---~~i~ad~VV~aaG~~s 260 (473)
..+...+.+.++++|++++++++|+++..+++.+.+.+.++ .++.+|.||+|+|...
T Consensus 213 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p 272 (462)
T PRK06416 213 KEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRP 272 (462)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCcc
Confidence 45677888889999999999999999988777777766554 5799999999999874
No 185
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.93 E-value=2.3e-08 Score=98.36 Aligned_cols=70 Identities=20% Similarity=0.362 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCc--EEEcCEEEEcCCcCh--HHH-HHhcCCCCC
Q psy7710 203 WGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGD--HLESSYALVCAGLQA--DEM-ALKSGCSLE 272 (473)
Q Consensus 203 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~--~i~ad~VV~aaG~~s--~~l-~~~~g~~~~ 272 (473)
...+.+.+.+.+++.|++++++++|+++...++++.+++++|. ++++|.|++|+|-.. ..| ++.+|++.+
T Consensus 213 D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~ 287 (454)
T COG1249 213 DPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELD 287 (454)
T ss_pred CHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceEC
Confidence 4678888999999989999999999999988776777776664 688999999999762 222 566666653
No 186
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.92 E-value=1.4e-08 Score=102.57 Aligned_cols=186 Identities=15% Similarity=0.049 Sum_probs=101.9
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCC----chhHHHHHHHhHHHHHH
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKP----GTLKAKLCVEGMNLAYE 131 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 131 (473)
.++||+|||||.+||.+|..++++ |.+|+|+||.+..+ +.|..+.|.+........ ++.. ..+.+
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~~--g~~V~l~~K~~~~r-g~t~~a~gG~~a~~~~~~~~~~ds~e--------~~~~d 73 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAEA--GLKVALLSKAPPKR-GHTVAAQGGINAALGNTVDVEGDSPE--------LHFYD 73 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHHhc--CCcEEEEEccccCC-CchhhhcccccccccCcccccCCCHH--------HHHHH
Confidence 679999999999999999999999 89999999995444 655555555544332111 1110 01111
Q ss_pred HHHhcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHH
Q psy7710 132 YFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMG 211 (473)
Q Consensus 132 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~ 211 (473)
..+..+...++.- +.. -.....+.+..+.++|.+-.+..+..-....+...... ..+..+.-....++..|.
T Consensus 74 tvkg~d~l~dqd~-i~~----~~~~ap~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~~---rt~~~~~~tG~~ll~~L~ 145 (562)
T COG1053 74 TVKGGDGLGDQDA-VEA----FADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGGHSKP---RTCFAADKTGHELLHTLY 145 (562)
T ss_pred HHhccCCcCCHHH-HHH----HHHhhHHHHHHHHHhCCCcccCCCccccccccCCcCCC---cceecCCCCcHHHHHHHH
Confidence 1110000000000 000 01122334455566665333333332111111111110 111122222456888888
Q ss_pred HHHHH-cCcEEEeCceEEEEEEcCCe-E-E---EEcCCC--cEEEcCEEEEcCCcCh
Q psy7710 212 EEFCE-LGGEIRLNQQVESFKENPES-V-T---ISTKQG--DHLESSYALVCAGLQA 260 (473)
Q Consensus 212 ~~~~~-~Gv~i~~~~~V~~i~~~~~~-v-~---v~~~~g--~~i~ad~VV~aaG~~s 260 (473)
+++.+ .+++++.+..+.++..++++ + . +...+| ..++++.||+|||+..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~l~~~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g 202 (562)
T COG1053 146 EQLLKFSGIEIFDEYFVLDLLVDDGGGVAGVVARDLRTGELYVFRAKAVILATGGAG 202 (562)
T ss_pred HHHHHhhcchhhhhhhhhhheecCCCcEEEEEEEEecCCcEEEEecCcEEEccCCce
Confidence 88887 67789999999999866432 2 2 334445 3567899999999876
No 187
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.91 E-value=9.4e-09 Score=103.80 Aligned_cols=44 Identities=32% Similarity=0.523 Sum_probs=39.0
Q ss_pred cccEEEEcCChHHHHHHHHHHhcCC--CCeEEEEeccCcccCcccC
Q psy7710 57 LYDVVVVGGGIVGVATARELKLNYP--KMKICLVEKEKELGMHQTG 100 (473)
Q Consensus 57 ~~dVvIIGaGi~Gl~~A~~L~~~~~--G~~V~viE~~~~~g~~~s~ 100 (473)
+.||+|||||++||++|++|+++++ |.+|+|+|+.+++||...+
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t 47 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQT 47 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEE
Confidence 3689999999999999999999865 7899999999999887654
No 188
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.91 E-value=8.2e-09 Score=98.83 Aligned_cols=174 Identities=13% Similarity=0.141 Sum_probs=97.2
Q ss_pred cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCc--hhHHHHHHHh-----HHHHHH
Q psy7710 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPG--TLKAKLCVEG-----MNLAYE 131 (473)
Q Consensus 59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~ 131 (473)
||+|||+|++||++|+.|++. .+|+|+-|. ..+..+|..+.|.+...+..+.+ .....-...+ .+..+.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~---~~V~vltk~-~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~ 84 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS---FRVTVLTKG-PLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEF 84 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC---CcEEEEeCC-CCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHH
Confidence 899999999999999999986 799999998 56667787887777765533221 1100000000 000000
Q ss_pred HHHhcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHH-HhhcCCcccceeEecCCccceeHHHHHHHH
Q psy7710 132 YFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEI-KTIEPYCKGVKAIHSPNTGIVDWGLVTRVM 210 (473)
Q Consensus 132 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l 210 (473)
+ ...-...++++..+|+ .+.--....+ ..++.......-++... --...++..|
T Consensus 85 i---------------------v~~~~~ai~~Li~~Gv-~FDr~~~g~~~lt~EggHS~rRIlH~~~---~TG~~I~~~L 139 (518)
T COG0029 85 I---------------------VSEAPEAIEWLIDLGV-PFDRDEDGRLHLTREGGHSRRRILHAAD---ATGKEIMTAL 139 (518)
T ss_pred H---------------------HHhHHHHHHHHHHcCC-CCcCCCCCceeeeeecccCCceEEEecC---CccHHHHHHH
Confidence 0 0111223333334443 1110000000 00000000000011111 1236688888
Q ss_pred HHHHHH-cCcEEEeCceEEEEEEcCC-eE-EEEc--CCC--cEEEcCEEEEcCCcChH
Q psy7710 211 GEEFCE-LGGEIRLNQQVESFKENPE-SV-TIST--KQG--DHLESSYALVCAGLQAD 261 (473)
Q Consensus 211 ~~~~~~-~Gv~i~~~~~V~~i~~~~~-~v-~v~~--~~g--~~i~ad~VV~aaG~~s~ 261 (473)
.+.+++ .+++++.++.+.+|..+++ .+ .|.+ .++ ..+.++.||+|||+.+.
T Consensus 140 ~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ 197 (518)
T COG0029 140 LKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGG 197 (518)
T ss_pred HHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCCCcc
Confidence 888876 6999999999999988876 44 3333 322 47889999999998763
No 189
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.90 E-value=6.6e-08 Score=91.64 Aligned_cols=78 Identities=23% Similarity=0.421 Sum_probs=62.0
Q ss_pred cCCccceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCe-EEEEcCCCcEEEcCEEEEcCCcChHH----HHHhcCC
Q psy7710 195 SPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPES-VTISTKQGDHLESSYALVCAGLQADE----MALKSGC 269 (473)
Q Consensus 195 ~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~-v~v~~~~g~~i~ad~VV~aaG~~s~~----l~~~~g~ 269 (473)
.++-|.-.-..++..+.+.++++|++|+++++|.+|..+++. ..|.+.+|.++.+|+||+|.|..+.+ +.+.+|+
T Consensus 164 ~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg~dw~~~l~~K~Gv 243 (486)
T COG2509 164 QRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSGRDWFEMLHKKLGV 243 (486)
T ss_pred ccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcchHHHHHHHHHhcCc
Confidence 344444445778999999999999999999999999988764 45888888899999999999987654 4455566
Q ss_pred CCC
Q psy7710 270 SLE 272 (473)
Q Consensus 270 ~~~ 272 (473)
...
T Consensus 244 ~~~ 246 (486)
T COG2509 244 KMR 246 (486)
T ss_pred ccc
Confidence 543
No 190
>PLN02268 probable polyamine oxidase
Probab=98.90 E-value=1.1e-08 Score=102.50 Aligned_cols=41 Identities=37% Similarity=0.621 Sum_probs=37.5
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccC
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG 100 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~ 100 (473)
.+|+|||||++||++|+.|.++ |.+|+|+|+.+++||....
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~--g~~v~vlEa~~r~GGri~t 41 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDA--SFKVTLLESRDRIGGRVHT 41 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCCCCCceeee
Confidence 3799999999999999999998 8999999999999988644
No 191
>PLN02568 polyamine oxidase
Probab=98.90 E-value=5.6e-08 Score=98.66 Aligned_cols=54 Identities=19% Similarity=0.265 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcC
Q psy7710 204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ 259 (473)
Q Consensus 204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~ 259 (473)
..+.+.|.+.+. +.+|+++++|++|..+++++.|++.+|.+++||+||+|+-..
T Consensus 242 ~~Li~~La~~L~--~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl~ 295 (539)
T PLN02568 242 LSVIEALASVLP--PGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSLG 295 (539)
T ss_pred HHHHHHHHhhCC--CCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCHH
Confidence 446666666553 347999999999999888899999888789999999999654
No 192
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.89 E-value=8.2e-08 Score=103.84 Aligned_cols=35 Identities=31% Similarity=0.451 Sum_probs=32.9
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~ 92 (473)
.++||+|||+|.+|+++|+.+++. |.+|+|+||..
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~--G~~V~lleK~~ 46 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEH--GANVLLLEKAH 46 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHC--CCeEEEEeccc
Confidence 568999999999999999999999 99999999984
No 193
>KOG1399|consensus
Probab=98.89 E-value=1.4e-08 Score=99.31 Aligned_cols=63 Identities=14% Similarity=0.115 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHcCc--EEEeCceEEEEEEcC-CeEEEEcCCC----cEEEcCEEEEcCCcCh-HHHHHh
Q psy7710 204 GLVTRVMGEEFCELGG--EIRLNQQVESFKENP-ESVTISTKQG----DHLESSYALVCAGLQA-DEMALK 266 (473)
Q Consensus 204 ~~~~~~l~~~~~~~Gv--~i~~~~~V~~i~~~~-~~v~v~~~~g----~~i~ad~VV~aaG~~s-~~l~~~ 266 (473)
..+.+.|...++..++ .|.++++|..+...+ +.|.|.+.+. .+.-+|.||+|+|.+. +.+...
T Consensus 90 ~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~ 160 (448)
T KOG1399|consen 90 REVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQI 160 (448)
T ss_pred HHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcC
Confidence 4678888888887765 789999999999888 7899887543 3567899999999995 444443
No 194
>PTZ00058 glutathione reductase; Provisional
Probab=98.89 E-value=2.3e-08 Score=101.66 Aligned_cols=46 Identities=50% Similarity=0.727 Sum_probs=39.0
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceE
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVV 106 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~ 106 (473)
.+|||+|||||++|+++|..+++. |.+|+|||++ .+|| ++.|.|++
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~--G~~ValIEk~-~~GG--tCln~GCi 92 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARN--KAKVALVEKD-YLGG--TCVNVGCV 92 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHc--CCeEEEEecc-cccc--cccccCCC
Confidence 578999999999999999999999 9999999997 5554 44555654
No 195
>PRK06370 mercuric reductase; Validated
Probab=98.89 E-value=2.6e-08 Score=100.28 Aligned_cols=40 Identities=33% Similarity=0.442 Sum_probs=36.0
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcc
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQ 98 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~ 98 (473)
.++||+|||||++|+++|+.|++. |++|+|+|+. .+||.+
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~--G~~v~lie~~-~~GG~c 43 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGL--GMKVALIERG-LLGGTC 43 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC--CCeEEEEecC-ccCCce
Confidence 569999999999999999999999 9999999997 566554
No 196
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=98.88 E-value=3.1e-08 Score=100.76 Aligned_cols=58 Identities=12% Similarity=0.175 Sum_probs=44.9
Q ss_pred HHHHcCcEEEeCceEEEEEEcCCeEE---EEcCCC---c-EEEcCEEEEcCCcC-hHHHHHhcCCC
Q psy7710 213 EFCELGGEIRLNQQVESFKENPESVT---ISTKQG---D-HLESSYALVCAGLQ-ADEMALKSGCS 270 (473)
Q Consensus 213 ~~~~~Gv~i~~~~~V~~i~~~~~~v~---v~~~~g---~-~i~ad~VV~aaG~~-s~~l~~~~g~~ 270 (473)
.++..+.+|++++.|++|..++++++ +...++ + .+.++.||+|+|+. |+.|+..+|+.
T Consensus 212 a~~~~nl~v~t~a~v~ri~~~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~Sgig 277 (542)
T COG2303 212 ALKRPNLTLLTGARVRRILLEGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGIG 277 (542)
T ss_pred HhcCCceEEecCCEEEEEEEECCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHhcCCC
Confidence 45556799999999999999887543 443333 1 25678999999998 89999998876
No 197
>PTZ00367 squalene epoxidase; Provisional
Probab=98.88 E-value=3.5e-07 Score=93.21 Aligned_cols=35 Identities=34% Similarity=0.590 Sum_probs=32.7
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~ 92 (473)
.++||+|||||++|+++|+.|+++ |.+|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~--G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQ--GRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhc--CCEEEEEcccc
Confidence 468999999999999999999999 99999999973
No 198
>PRK10262 thioredoxin reductase; Provisional
Probab=98.88 E-value=3.6e-08 Score=94.40 Aligned_cols=54 Identities=15% Similarity=0.279 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710 205 LVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA 260 (473)
Q Consensus 205 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s 260 (473)
.+.+.+.+.+...+.+++.+ .|..++..++.+.+.+..+ .+.+|.||+|+|.+.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~-~v~~v~~~~~~~~v~~~~~-~~~~d~vilAtG~~~ 117 (321)
T PRK10262 64 LLMERMHEHATKFETEIIFD-HINKVDLQNRPFRLTGDSG-EYTCDALIIATGASA 117 (321)
T ss_pred HHHHHHHHHHHHCCCEEEee-EEEEEEecCCeEEEEecCC-EEEECEEEECCCCCC
Confidence 34555666666677777665 5777887777777776555 789999999999874
No 199
>PRK14727 putative mercuric reductase; Provisional
Probab=98.87 E-value=1.1e-07 Score=95.90 Aligned_cols=57 Identities=21% Similarity=0.304 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChH
Q psy7710 204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD 261 (473)
Q Consensus 204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~ 261 (473)
..+...+.+.+++.|++++++++|+++..+++.+.+.++++ ++.+|.||+|+|...+
T Consensus 228 ~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn 284 (479)
T PRK14727 228 PLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHAN 284 (479)
T ss_pred HHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCC
Confidence 45677888889999999999999999987777777777776 7999999999999853
No 200
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.87 E-value=3.3e-08 Score=73.33 Aligned_cols=33 Identities=33% Similarity=0.624 Sum_probs=30.6
Q ss_pred cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCc
Q psy7710 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKE 93 (473)
Q Consensus 59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~ 93 (473)
.|+|||||.+|+.+|..|++. |.+|+++++.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~--g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL--GKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT--TSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHh--CcEEEEEeccch
Confidence 489999999999999999999 999999999853
No 201
>PLN02785 Protein HOTHEAD
Probab=98.87 E-value=4.1e-08 Score=100.58 Aligned_cols=62 Identities=16% Similarity=0.128 Sum_probs=43.8
Q ss_pred HHHHHHHcCcEEEeCceEEEEEEcCC----e-EEEEc--CCCcEE-------EcCEEEEcCCcC-hHHHHHhcCCCC
Q psy7710 210 MGEEFCELGGEIRLNQQVESFKENPE----S-VTIST--KQGDHL-------ESSYALVCAGLQ-ADEMALKSGCSL 271 (473)
Q Consensus 210 l~~~~~~~Gv~i~~~~~V~~i~~~~~----~-v~v~~--~~g~~i-------~ad~VV~aaG~~-s~~l~~~~g~~~ 271 (473)
+...+...+++|++++.|++|..+++ + +.|+. .+|... ..+.||+|+|+. +++|+..+||..
T Consensus 226 l~~~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIGp 302 (587)
T PLN02785 226 LLAAGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGP 302 (587)
T ss_pred HHhhcCCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEECCCceEEEEeecccCceEEecccccCCHHHHHHcCCCC
Confidence 33455567899999999999997642 2 33443 445322 236899999997 889998888764
No 202
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.86 E-value=6.4e-07 Score=87.78 Aligned_cols=58 Identities=19% Similarity=0.137 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEE-EEcCCC--cEEEcCEEEEcCCcCh
Q psy7710 203 WGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVT-ISTKQG--DHLESSYALVCAGLQA 260 (473)
Q Consensus 203 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~-v~~~~g--~~i~ad~VV~aaG~~s 260 (473)
..++.+.|.+.+++.|++++++++|.++..+++++. +.+.++ ..++||.||+|+|.+.
T Consensus 258 G~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf~ 318 (422)
T PRK05329 258 GLRLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSFF 318 (422)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCcc
Confidence 356788899999999999999999999997776655 344444 3589999999999873
No 203
>KOG2415|consensus
Probab=98.86 E-value=2.8e-08 Score=92.47 Aligned_cols=171 Identities=25% Similarity=0.396 Sum_probs=98.8
Q ss_pred CcccEEEEcCChHHHHHHHHHHhc----CCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHH
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLN----YPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYE 131 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~----~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (473)
..+||+|||||++||++|.+|.+. +..++|.|+||...+|+.+- ++.++. |..+. +++.+
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gghtl--SGavie------p~ald--------EL~P~ 138 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTL--SGAVIE------PGALD--------ELLPD 138 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCcee--cceeec------cchhh--------hhCcc
Confidence 568999999999999999998653 23689999999977775432 222232 22210 00111
Q ss_pred HHHhcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHH
Q psy7710 132 YFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMG 211 (473)
Q Consensus 132 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~ 211 (473)
+.++ +.+.. ...+ .+ .+.+++.+..-. .|.. ..+-......+.-..++++|-
T Consensus 139 wke~-~apl~-----t~vT-------~d-----------~~~fLt~~~~i~-vPv~---~pm~NhGNYvv~L~~~v~wLg 190 (621)
T KOG2415|consen 139 WKED-GAPLN-----TPVT-------SD-----------KFKFLTGKGRIS-VPVP---SPMDNHGNYVVSLGQLVRWLG 190 (621)
T ss_pred hhhc-CCccc-----cccc-------cc-----------ceeeeccCceee-cCCC---cccccCCcEEEEHHHHHHHHH
Confidence 1100 00000 0000 00 111121110000 0100 001111223456688999999
Q ss_pred HHHHHcCcEEEeCceEEEEEEcCC-eE-EEEcCC---------------CcEEEcCEEEEcCCcC---hHHHHHhcCCC
Q psy7710 212 EEFCELGGEIRLNQQVESFKENPE-SV-TISTKQ---------------GDHLESSYALVCAGLQ---ADEMALKSGCS 270 (473)
Q Consensus 212 ~~~~~~Gv~i~~~~~V~~i~~~~~-~v-~v~~~~---------------g~~i~ad~VV~aaG~~---s~~l~~~~g~~ 270 (473)
+++++.|++|+-+..+.++..+.+ .| .|.|+| |-++.|+.-|.|-|+. +.++.+..+++
T Consensus 191 ~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr 269 (621)
T KOG2415|consen 191 EKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLR 269 (621)
T ss_pred HHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccchhHHHHHHHhCcc
Confidence 999999999999999999986543 23 355532 2358899999999876 56888888776
No 204
>KOG1298|consensus
Probab=98.84 E-value=6.1e-08 Score=89.47 Aligned_cols=161 Identities=19% Similarity=0.251 Sum_probs=90.0
Q ss_pred CCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhH-HHHHHHH
Q psy7710 55 PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGM-NLAYEYF 133 (473)
Q Consensus 55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 133 (473)
+..+||+|||||++|.+.|+.|++. |.+|.||||+-. .|+...-++.+.+- ..+.++-
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kd--GRrVhVIERDl~-------------------EPdRivGEllQPGG~~~L~~LG 101 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKD--GRRVHVIERDLS-------------------EPDRIVGELLQPGGYLALSKLG 101 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhC--CcEEEEEecccc-------------------cchHHHHHhcCcchhHHHHHhC
Confidence 3578999999999999999999999 999999999721 34433333322221 1111110
Q ss_pred Hh---cCCCC-cccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHH
Q psy7710 134 DK---RNIPY-KKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRV 209 (473)
Q Consensus 134 ~~---~~~~~-~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 209 (473)
-+ .+++- ...|+.... ++++..--+|.... . ..+.+-.++..++++.
T Consensus 102 l~Dcve~IDAQ~v~Gy~ifk--------------------------~gk~v~~pyP~~~f-~--~d~~GrsFhnGRFvq~ 152 (509)
T KOG1298|consen 102 LEDCVEGIDAQRVTGYAIFK--------------------------DGKEVDLPYPLKNF-P--SDPSGRSFHNGRFVQR 152 (509)
T ss_pred HHHHhhcccceEeeeeEEEe--------------------------CCceeeccCCCcCC-C--CCcccceeeccHHHHH
Confidence 00 01111 111221111 11111111221110 0 0111223455789999
Q ss_pred HHHHHHH-cCcEEEeCceEEEEEEcCCeE---EEEcCCCcE--EEcCEEEEcCCcChHHHHHhc
Q psy7710 210 MGEEFCE-LGGEIRLNQQVESFKENPESV---TISTKQGDH--LESSYALVCAGLQADEMALKS 267 (473)
Q Consensus 210 l~~~~~~-~Gv~i~~~~~V~~i~~~~~~v---~v~~~~g~~--i~ad~VV~aaG~~s~~l~~~~ 267 (473)
|++.+.. .++++. +-.|.++.++++.+ +.+++.|++ ..|..-|+|.|.+| .+.+.+
T Consensus 153 lR~ka~slpNV~~e-eGtV~sLlee~gvvkGV~yk~k~gee~~~~ApLTvVCDGcfS-nlRrsL 214 (509)
T KOG1298|consen 153 LRKKAASLPNVRLE-EGTVKSLLEEEGVVKGVTYKNKEGEEVEAFAPLTVVCDGCFS-NLRRSL 214 (509)
T ss_pred HHHHHhcCCCeEEe-eeeHHHHHhccCeEEeEEEecCCCceEEEecceEEEecchhH-HHHHHh
Confidence 9988765 478875 45577777776543 345555544 45678999999998 465544
No 205
>KOG2614|consensus
Probab=98.83 E-value=5.4e-07 Score=84.76 Aligned_cols=36 Identities=39% Similarity=0.613 Sum_probs=32.5
Q ss_pred cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcc
Q psy7710 57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKEL 94 (473)
Q Consensus 57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~ 94 (473)
+.+|+|||||++|+++|..|.++ |.+|+|+|+...+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~--G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRK--GIDVVVLESREDP 37 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHc--CCeEEEEeecccc
Confidence 35799999999999999999999 9999999997544
No 206
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.83 E-value=1.9e-07 Score=94.00 Aligned_cols=46 Identities=35% Similarity=0.463 Sum_probs=37.6
Q ss_pred cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceE
Q psy7710 57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVV 106 (473)
Q Consensus 57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~ 106 (473)
+|||+|||||++|+++|..++++ |++|+|||+...+||. +.|.|++
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~--G~~V~liE~~~~~GG~--c~~~gci 48 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQL--GLKVACVEGRSTLGGT--CLNVGCM 48 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhC--CCeEEEEecCCceeee--eccCccc
Confidence 58999999999999999999999 9999999975456644 3444443
No 207
>PRK13748 putative mercuric reductase; Provisional
Probab=98.83 E-value=1.5e-07 Score=97.31 Aligned_cols=66 Identities=17% Similarity=0.211 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChH-HH--HHhcCCC
Q psy7710 204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD-EM--ALKSGCS 270 (473)
Q Consensus 204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~-~l--~~~~g~~ 270 (473)
..+...+.+.+++.|+++++++.|+++..+++.+.+.++++ ++.+|.||+|+|...+ .+ ++.+|+.
T Consensus 310 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~ 378 (561)
T PRK13748 310 PAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNTRSLALDAAGVT 378 (561)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCCCCcCchhcCce
Confidence 45777888889999999999999999987777777777776 7999999999998743 22 3445554
No 208
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.83 E-value=2.8e-08 Score=98.57 Aligned_cols=39 Identities=31% Similarity=0.532 Sum_probs=35.0
Q ss_pred CCcccEEEEcCChHHHHHHHHHHhcCCCCe-EEEEeccCccc
Q psy7710 55 PALYDVVVVGGGIVGVATARELKLNYPKMK-ICLVEKEKELG 95 (473)
Q Consensus 55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~-V~viE~~~~~g 95 (473)
..++||+|||||.+|+++|++|.++ |.. ++|+||+..+|
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~--g~~~~~i~Ek~~~~G 45 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQA--GVPDFVIFEKRDDVG 45 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHc--CCCcEEEEEccCCcC
Confidence 3678999999999999999999999 677 99999997665
No 209
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.82 E-value=8.5e-08 Score=93.40 Aligned_cols=53 Identities=17% Similarity=0.229 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcC
Q psy7710 204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ 259 (473)
Q Consensus 204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~ 259 (473)
..+.+++.+.+... |+++++|++|..+..++.+.+.+|.++.||.||+++-.+
T Consensus 215 ~~l~~al~~~l~~~---i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~~ 267 (444)
T COG1232 215 QSLIEALAEKLEAK---IRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPLP 267 (444)
T ss_pred HHHHHHHHHHhhhc---eeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCCHH
Confidence 56777777776654 899999999999877777777788789999999999766
No 210
>PLN02507 glutathione reductase
Probab=98.82 E-value=9.2e-08 Score=96.76 Aligned_cols=33 Identities=30% Similarity=0.325 Sum_probs=31.5
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEec
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEK 90 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~ 90 (473)
.+|||+|||||++|+.+|..+++. |++|+|||+
T Consensus 24 ~~yDvvVIG~GpaG~~aA~~a~~~--G~~V~liE~ 56 (499)
T PLN02507 24 YDFDLFVIGAGSGGVRAARFSANF--GAKVGICEL 56 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHHC--CCeEEEEec
Confidence 468999999999999999999999 999999996
No 211
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.81 E-value=9.1e-09 Score=98.61 Aligned_cols=60 Identities=17% Similarity=0.288 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCc-EEEcCEEEEcCCcChHHHHHhc
Q psy7710 204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGD-HLESSYALVCAGLQADEMALKS 267 (473)
Q Consensus 204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~-~i~ad~VV~aaG~~s~~l~~~~ 267 (473)
.++.....+.++++||+|++++.|++++.++ |++.+|. ++.++.||.|+|..++.+.+.+
T Consensus 209 ~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~----v~~~~g~~~I~~~tvvWaaGv~a~~~~~~l 269 (405)
T COG1252 209 PKLSKYAERALEKLGVEVLLGTPVTEVTPDG----VTLKDGEEEIPADTVVWAAGVRASPLLKDL 269 (405)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCceEEECCCc----EEEccCCeeEecCEEEEcCCCcCChhhhhc
Confidence 4455667788899999999999999998764 5555554 5999999999999988888864
No 212
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.81 E-value=4.5e-08 Score=97.54 Aligned_cols=64 Identities=13% Similarity=0.182 Sum_probs=48.8
Q ss_pred CccceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCC-eE-EEEcCCCcEEEcCEEEEcCCcChH
Q psy7710 197 NTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPE-SV-TISTKQGDHLESSYALVCAGLQAD 261 (473)
Q Consensus 197 ~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~-~v-~v~~~~g~~i~ad~VV~aaG~~s~ 261 (473)
...++|-..+-+.|.+.++++|++++.++ |+++..+++ .+ .|++.+|.+++||.||-|+|..+.
T Consensus 147 ~ayhlDR~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 147 YAYHLDRAKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL 212 (454)
T ss_dssp -EEEEEHHHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred eeEEEeHHHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence 44578889999999999999999998875 777766544 33 588888989999999999998763
No 213
>PLN02612 phytoene desaturase
Probab=98.81 E-value=8.5e-08 Score=98.43 Aligned_cols=56 Identities=20% Similarity=0.344 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCe--EEEEcCCCcEEEcCEEEEcCCcC
Q psy7710 204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPES--VTISTKQGDHLESSYALVCAGLQ 259 (473)
Q Consensus 204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~--v~v~~~~g~~i~ad~VV~aaG~~ 259 (473)
..+++.|.+.++++|++|+++++|++|..++++ +.|++.+|+.++||.||+|+...
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~ 365 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVD 365 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHH
Confidence 568889999998999999999999999985443 34777778789999999999764
No 214
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.80 E-value=1.2e-07 Score=95.33 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHcCcEEEeCceEEEEEEcC-CeE-EEEcCCCc-----EEEcCEEEEcCCcC
Q psy7710 203 WGLVTRVMGEEFCELGGEIRLNQQVESFKENP-ESV-TISTKQGD-----HLESSYALVCAGLQ 259 (473)
Q Consensus 203 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~-~~v-~v~~~~g~-----~i~ad~VV~aaG~~ 259 (473)
+..+.+.+.+.+++.|++|+++++|++|..++ +.+ .|++.+++ ++.||.||+|+...
T Consensus 212 ~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~ 275 (453)
T TIGR02731 212 PERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVD 275 (453)
T ss_pred hHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHH
Confidence 46788899999989999999999999998643 323 46664443 68999999999775
No 215
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.79 E-value=1.6e-07 Score=79.47 Aligned_cols=42 Identities=14% Similarity=0.367 Sum_probs=34.6
Q ss_pred cCcEEE-eCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCc
Q psy7710 217 LGGEIR-LNQQVESFKENPESVTISTKQGDHLESSYALVCAGL 258 (473)
Q Consensus 217 ~Gv~i~-~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~ 258 (473)
.|++|. ...+|++|...++++.|.+.+|..+.+|.||+|+|.
T Consensus 113 ~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 113 AGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 354443 356899999998888888888889999999999995
No 216
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.79 E-value=4e-08 Score=99.33 Aligned_cols=60 Identities=22% Similarity=0.268 Sum_probs=45.5
Q ss_pred eeHHHHHHHHHHHHHHcCc--EEEeCceEEEEEEcC-----CeEEEEcCC-C--cEEEcCEEEEcCCcCh
Q psy7710 201 VDWGLVTRVMGEEFCELGG--EIRLNQQVESFKENP-----ESVTISTKQ-G--DHLESSYALVCAGLQA 260 (473)
Q Consensus 201 ~~~~~~~~~l~~~~~~~Gv--~i~~~~~V~~i~~~~-----~~v~v~~~~-g--~~i~ad~VV~aaG~~s 260 (473)
.....+.+.|..+++..++ .|++|++|+++...+ +.|.|++.+ | .+-.+|.||+|+|.++
T Consensus 81 ~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~ 150 (531)
T PF00743_consen 81 PSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFS 150 (531)
T ss_dssp EBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSS
T ss_pred CCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcC
Confidence 3456788888888887776 689999999998754 468888754 3 2345799999999985
No 217
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.79 E-value=2.5e-07 Score=93.30 Aligned_cols=57 Identities=19% Similarity=0.232 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcC---CCcEEEcCEEEEcCCcCh
Q psy7710 204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTK---QGDHLESSYALVCAGLQA 260 (473)
Q Consensus 204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~---~g~~i~ad~VV~aaG~~s 260 (473)
..+...+.+.+++.|++++++++|+++..+++.+.+++. ++.++++|.||+|+|...
T Consensus 207 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p 266 (463)
T TIGR02053 207 PEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRP 266 (463)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCc
Confidence 346677888888999999999999999877665555432 235799999999999764
No 218
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.78 E-value=1.8e-07 Score=84.77 Aligned_cols=62 Identities=18% Similarity=0.209 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEE-EEcCCC--cEEEcCEEEEcCCcC-hHHHHH
Q psy7710 204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVT-ISTKQG--DHLESSYALVCAGLQ-ADEMAL 265 (473)
Q Consensus 204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~-v~~~~g--~~i~ad~VV~aaG~~-s~~l~~ 265 (473)
-++.+.|...+++.|+.++.+.+|.+.+..+++|+ |.|.+. ..++||..|+|+|.+ |..|..
T Consensus 258 iRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLva 323 (421)
T COG3075 258 IRLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVA 323 (421)
T ss_pred hhHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccccCCCChhHeeeeccccccccchh
Confidence 45567777888899999999999999998888775 777665 457899999999998 665543
No 219
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.78 E-value=2.1e-07 Score=93.93 Aligned_cols=33 Identities=30% Similarity=0.431 Sum_probs=31.6
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEec
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEK 90 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~ 90 (473)
.++|++|||||++|+++|..+++. |.+|+|||+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~--g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQL--GLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhC--CCeEEEEec
Confidence 469999999999999999999999 999999998
No 220
>KOG2404|consensus
Probab=98.77 E-value=8.8e-08 Score=86.32 Aligned_cols=48 Identities=29% Similarity=0.497 Sum_probs=40.2
Q ss_pred cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEe
Q psy7710 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHA 108 (473)
Q Consensus 59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~ 108 (473)
.|+|||+|++||+++..+... +-.|+++|+...+|+.+-..++|+-.+
T Consensus 11 pvvVIGgGLAGLsasn~iin~--gg~V~llek~~s~GGNSiKAsSGINgA 58 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINK--GGIVILLEKAGSIGGNSIKASSGINGA 58 (477)
T ss_pred cEEEECCchhhhhhHHHHHhc--CCeEEEEeccCCcCCcceecccCcCCC
Confidence 499999999999999999998 667999999988887766666665443
No 221
>PLN02546 glutathione reductase
Probab=98.77 E-value=2.9e-07 Score=93.83 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=31.3
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEec
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEK 90 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~ 90 (473)
.+|||+|||+|++|+.+|..+++. |++|+|+|+
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~--G~~V~liE~ 110 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNF--GASAAVCEL 110 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC--CCeEEEEec
Confidence 468999999999999999999999 999999996
No 222
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.75 E-value=5.3e-07 Score=91.34 Aligned_cols=57 Identities=11% Similarity=0.021 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710 204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA 260 (473)
Q Consensus 204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s 260 (473)
..+.+.+.+.+++.|+++++++.+.++...++.+.+.+.+|.++.+|.||+|+|...
T Consensus 222 ~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~p 278 (499)
T PTZ00052 222 RQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKP 278 (499)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCC
Confidence 456678888899999999999999999876666667666777899999999999874
No 223
>PLN02529 lysine-specific histone demethylase 1
Probab=98.75 E-value=3e-07 Score=95.52 Aligned_cols=43 Identities=28% Similarity=0.406 Sum_probs=38.8
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccC
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG 100 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~ 100 (473)
...||+|||||++|+++|..|+++ |.+|+|+|+.+++||....
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~--g~~v~v~E~~~~~GG~~~t 201 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSF--GFKVVVLEGRNRPGGRVYT 201 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHc--CCcEEEEecCccCcCceee
Confidence 467999999999999999999999 9999999999889887543
No 224
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.74 E-value=5.7e-07 Score=90.53 Aligned_cols=44 Identities=23% Similarity=0.333 Sum_probs=35.9
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceE
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVV 106 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~ 106 (473)
.||+|||+|.+|+.+|..++++ |.+|+|+|++ .+||. +.+.|++
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~--g~~v~~~e~~-~~gG~--c~~~gci 45 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQL--GADVTVIERD-GLGGA--AVLTDCV 45 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhC--CCeEEEEEcc-CCCCc--ccccCCc
Confidence 4799999999999999999999 9999999997 55433 3344443
No 225
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.73 E-value=1.8e-07 Score=94.23 Aligned_cols=39 Identities=36% Similarity=0.378 Sum_probs=35.3
Q ss_pred cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcc
Q psy7710 57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQ 98 (473)
Q Consensus 57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~ 98 (473)
++||+|||||++|+++|..|++. |.+|+|||++ .+||.+
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~--G~~V~lie~~-~~GG~c 42 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQL--GLKTAVVEKK-YWGGVC 42 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhC--CCeEEEEecC-CCCCce
Confidence 58999999999999999999999 9999999997 666554
No 226
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.72 E-value=8e-08 Score=102.36 Aligned_cols=64 Identities=23% Similarity=0.401 Sum_probs=52.0
Q ss_pred HHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcC-hHHHHHhcCCCC
Q psy7710 208 RVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ-ADEMALKSGCSL 271 (473)
Q Consensus 208 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~-s~~l~~~~g~~~ 271 (473)
..+.+.++++|+++++++.|+++..++....|++.+|.++.+|.||+|+|.. ...|++.+|++.
T Consensus 186 ~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~la~~~gl~~ 250 (785)
T TIGR02374 186 RLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPNDELAVSAGIKV 250 (785)
T ss_pred HHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCcCcHHHHhcCCcc
Confidence 3466777889999999999999987655556777888899999999999987 456777777764
No 227
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.71 E-value=2.6e-07 Score=92.91 Aligned_cols=61 Identities=11% Similarity=0.185 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHcCcEEEeCceEEEEEEcC--C----eEEEEcCCC---cEEEcCEEEEcCCcC-hHHHHH
Q psy7710 205 LVTRVMGEEFCELGGEIRLNQQVESFKENP--E----SVTISTKQG---DHLESSYALVCAGLQ-ADEMAL 265 (473)
Q Consensus 205 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~--~----~v~v~~~~g---~~i~ad~VV~aaG~~-s~~l~~ 265 (473)
.+.+.+.+.++++|++|+++++|++|..++ + .+.|++.+| ..+.||+||+|+..+ ...|+.
T Consensus 220 ~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll~ 290 (474)
T TIGR02732 220 YLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLLP 290 (474)
T ss_pred hHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhhCC
Confidence 356778899999999999999999998753 2 223444333 458999999999988 444443
No 228
>PLN02576 protoporphyrinogen oxidase
Probab=98.69 E-value=3e-07 Score=93.68 Aligned_cols=45 Identities=29% Similarity=0.402 Sum_probs=39.3
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCC
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGH 101 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~ 101 (473)
.++||+|||||++||++|++|+++. |.+|+|+|+.+++||...+.
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~-g~~v~vlEa~~rvGGr~~t~ 55 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKH-GVNVLVTEARDRVGGNITSV 55 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhc-CCCEEEEecCCCCCCceeEe
Confidence 4578999999999999999999873 58999999999999886543
No 229
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.68 E-value=1.3e-07 Score=94.82 Aligned_cols=65 Identities=29% Similarity=0.422 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcC-hHHHHHhcCCCC
Q psy7710 206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ-ADEMALKSGCSL 271 (473)
Q Consensus 206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~-s~~l~~~~g~~~ 271 (473)
+.+.+.+.+++.|++++++++|+++..+++...+.++++ ++.+|.||+|+|.. ...+++.+|++.
T Consensus 193 ~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~d~vi~a~G~~p~~~~l~~~gl~~ 258 (444)
T PRK09564 193 ITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVTDKG-EYEADVVIVATGVKPNTEFLEDTGLKT 258 (444)
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeCCC-EEEcCEEEECcCCCcCHHHHHhcCccc
Confidence 444567778889999999999999976555455666665 89999999999987 446788777653
No 230
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.68 E-value=9.8e-08 Score=101.71 Aligned_cols=66 Identities=14% Similarity=0.314 Sum_probs=52.3
Q ss_pred HHHHHHHHHHcCcEEEeCceEEEEEEcC--CeEEEEcCCCcEEEcCEEEEcCCcC-hHHHHHhcCCCCC
Q psy7710 207 TRVMGEEFCELGGEIRLNQQVESFKENP--ESVTISTKQGDHLESSYALVCAGLQ-ADEMALKSGCSLE 272 (473)
Q Consensus 207 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~--~~v~v~~~~g~~i~ad~VV~aaG~~-s~~l~~~~g~~~~ 272 (473)
...+.+.++++|+++++++.|++|..++ ....+.+.+|.++.+|.||+|+|.. ...|++.+|+..+
T Consensus 190 ~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~ 258 (847)
T PRK14989 190 GEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKLATQCGLAVA 258 (847)
T ss_pred HHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCchHHhhcCccCC
Confidence 3447777888999999999999997643 3445777788899999999999988 4568888887643
No 231
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.65 E-value=3.7e-08 Score=70.06 Aligned_cols=37 Identities=30% Similarity=0.502 Sum_probs=32.8
Q ss_pred EEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccC
Q psy7710 62 VVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG 100 (473)
Q Consensus 62 IIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~ 100 (473)
|||||++|+++|+.|+++ |.+|+|+|+.+.+|+.+..
T Consensus 1 IiGaG~sGl~aA~~L~~~--g~~v~v~E~~~~~GG~~~~ 37 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA--GYRVTVFEKNDRLGGRARS 37 (68)
T ss_dssp EES-SHHHHHHHHHHHHT--TSEEEEEESSSSSSGGGCE
T ss_pred CEeeCHHHHHHHHHHHHC--CCcEEEEecCcccCcceeE
Confidence 899999999999999999 8999999999888876544
No 232
>KOG1335|consensus
Probab=98.64 E-value=7.2e-07 Score=82.51 Aligned_cols=56 Identities=25% Similarity=0.404 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCC-eEEEEcC---CC--cEEEcCEEEEcCCcC
Q psy7710 204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPE-SVTISTK---QG--DHLESSYALVCAGLQ 259 (473)
Q Consensus 204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~-~v~v~~~---~g--~~i~ad~VV~aaG~~ 259 (473)
..+...+++.++++|+++.++++|.....+++ .+.|... ++ .+++||.+++|+|-.
T Consensus 252 ~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRr 313 (506)
T KOG1335|consen 252 GEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRR 313 (506)
T ss_pred HHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCc
Confidence 56788888889999999999999999998876 4544322 22 578999999999965
No 233
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.64 E-value=1.6e-07 Score=85.66 Aligned_cols=43 Identities=28% Similarity=0.455 Sum_probs=38.3
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCC
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGH 101 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~ 101 (473)
...+|+|||+|++||++|+.|+++ .+|+++|.++++||.+...
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r---hdVTLfEA~~rlGGha~Tv 49 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR---HDVTLFEADRRLGGHANTV 49 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc---cceEEEeccccccCcccee
Confidence 467899999999999999999987 7999999999999876543
No 234
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.64 E-value=1.3e-06 Score=87.85 Aligned_cols=49 Identities=27% Similarity=0.452 Sum_probs=38.1
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc--------CcccCcccCCCcceEE
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE--------KELGMHQTGHNSGVVH 107 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~--------~~~g~~~s~~~~g~~~ 107 (473)
.+|||+|||+|++|..+|..+++.+ |.+|+|||++ ..+ |.++.|.||+.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~-g~~V~lie~~~~~~~~~~~~~--GGtCln~GCiP 58 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLY-KKRVAVIDVQTHHGPPHYAAL--GGTCVNVGCVP 58 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhc-CCEEEEEecccCccccccCCc--cCeecCcCCcc
Confidence 5699999999999999999999952 7999999973 234 34455666653
No 235
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.64 E-value=2.3e-07 Score=93.12 Aligned_cols=50 Identities=16% Similarity=0.355 Sum_probs=39.0
Q ss_pred HHHHHHcCcEEEeCceEEEEEEcCCeEEEEcC-CCcEEE--cCEEEEcCCcCh
Q psy7710 211 GEEFCELGGEIRLNQQVESFKENPESVTISTK-QGDHLE--SSYALVCAGLQA 260 (473)
Q Consensus 211 ~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~-~g~~i~--ad~VV~aaG~~s 260 (473)
.+.+++.|++++.++.|++|+.+++.+.+... ++..++ +|++|+|+|...
T Consensus 63 ~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~ 115 (444)
T PRK09564 63 PEEFIKSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARP 115 (444)
T ss_pred HHHHHHCCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCC
Confidence 34456679999999999999988887777642 344666 999999999864
No 236
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.64 E-value=5.5e-07 Score=90.78 Aligned_cols=33 Identities=36% Similarity=0.552 Sum_probs=31.3
Q ss_pred cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710 57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE 91 (473)
Q Consensus 57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~ 91 (473)
+||++|||+|++|+.+|+.+++. |.+|++||+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~--G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADY--GAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHC--CCeEEEEecc
Confidence 48999999999999999999999 9999999974
No 237
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.62 E-value=1.4e-07 Score=101.66 Aligned_cols=38 Identities=26% Similarity=0.387 Sum_probs=34.2
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g 95 (473)
...+|+|||||++||++|++|+++ |++|+|+|+.+.+|
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~--G~~VtVfE~~~~~G 342 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVE--GFPVTVFEAFHDLG 342 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC--CCeEEEEeeCCCCC
Confidence 457899999999999999999999 99999999986554
No 238
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.62 E-value=3e-07 Score=91.82 Aligned_cols=61 Identities=15% Similarity=0.208 Sum_probs=46.5
Q ss_pred HHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh-HHHHHhcCCCC
Q psy7710 207 TRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA-DEMALKSGCSL 271 (473)
Q Consensus 207 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s-~~l~~~~g~~~ 271 (473)
...+.+.++++|++++++++|+++.. . .+++.+|..+++|.||+|+|... ..+++..|+..
T Consensus 192 ~~~l~~~l~~~gI~i~~~~~v~~i~~--~--~v~~~~g~~~~~D~vl~a~G~~pn~~~l~~~gl~~ 253 (438)
T PRK13512 192 NQPILDELDKREIPYRLNEEIDAING--N--EVTFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKL 253 (438)
T ss_pred HHHHHHHHHhcCCEEEECCeEEEEeC--C--EEEECCCCEEEeCEEEECcCCCcChHHHHhcCccc
Confidence 34466778889999999999999863 2 34555666899999999999873 46777777654
No 239
>KOG1238|consensus
Probab=98.62 E-value=1.9e-06 Score=85.90 Aligned_cols=245 Identities=16% Similarity=0.169 Sum_probs=126.3
Q ss_pred CCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecccccccccCCCCC------CcccEEEEcCChHHHHHHHHHHhcC
Q psy7710 7 PTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFFSMSSSQSP------ALYDVVVVGGGIVGVATARELKLNY 80 (473)
Q Consensus 7 ~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~dVvIIGaGi~Gl~~A~~L~~~~ 80 (473)
...|||+|||+|+|||+.|.+|+ ..|+.++.+.|+..++...+..... ..+|.-= =.=+.. .+...+
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLS-En~~~~VLLLEaGg~~~~~~~~p~~~~~~q~s~~dw~y-~t~Ps~-~ac~~m---- 127 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLS-ENPNWSVLLLEAGGDPPLYSDPPLLAANLQLSLYDWSY-HTEPSQ-HACLAM---- 127 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhc-cCCCceEEEEecCCCCcccccchHHHHHhccccccccC-cCccCh-hhhhhh----
Confidence 56799999999999999999999 5688999999988766322221100 0000000 000000 000011
Q ss_pred CCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHH----HHHHhHHHHHHHHHhcCC------CCc-ccCeEEEE
Q psy7710 81 PKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAK----LCVEGMNLAYEYFDKRNI------PYK-KCGKLIVA 149 (473)
Q Consensus 81 ~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~------~~~-~~g~l~~~ 149 (473)
.-+....-|+ ++-||+|.-|+++...+-..+.+.+... |.+.....+.+..+.... +|+ ..|.+.+.
T Consensus 128 -~~~~c~wpRG-rVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~~~~~y~~~~g~~~ve 205 (623)
T KOG1238|consen 128 -SEDRCYWPRG-RVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDPELTPYHGAGGPLLVE 205 (623)
T ss_pred -cCCceecCcc-ceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCcccCcccccCCcceec
Confidence 1234555666 6778899999999888866555554332 233333444444433221 232 22333333
Q ss_pred eCc-ChhhHHHHHHHHHhCCCCcceeeCHHH-H-HhhcCCcccceeEecCCccceeHHHHHHHHHHHHH--HcCcEEEeC
Q psy7710 150 LNE-QLEPLHDLYERSIQNNVKDVRLVSAEE-I-KTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFC--ELGGEIRLN 224 (473)
Q Consensus 150 ~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~-~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~Gv~i~~~ 224 (473)
... .............+.|. ...-+.... . ....+.. .+..-.+. ..+++.+.+. +.+..+..+
T Consensus 206 ~~~~~~~~~~~~~~ag~e~G~-~~~D~nG~~~tg~~~l~~t-------~~~g~R~s---~~~a~l~~~~~~R~NL~~~~~ 274 (623)
T KOG1238|consen 206 AGVYPNNLFTAFHRAGTEIGG-SIFDRNGERHTGASLLQYT-------IRNGIRVS---LAKAYLKPIRLTRPNLHISRN 274 (623)
T ss_pred cccccCchhhHhHHhHHhcCC-CccCCCCccccchhhhhcc-------ccCCEEEE---ehhhhhhhhhccCcccccccc
Confidence 333 33444445555566664 211111110 0 0000000 00000110 1122223222 347788889
Q ss_pred ceEEEEEEcC--CeE-EEE-cCC-CcEE--Ec-CEEEEcCCcC-hHHHHHhcCCCC
Q psy7710 225 QQVESFKENP--ESV-TIS-TKQ-GDHL--ES-SYALVCAGLQ-ADEMALKSGCSL 271 (473)
Q Consensus 225 ~~V~~i~~~~--~~v-~v~-~~~-g~~i--~a-d~VV~aaG~~-s~~l~~~~g~~~ 271 (473)
+.|+.|..+. ... .|. ..+ |+.. .| +-||+++|+. |++|+-.+||..
T Consensus 275 ~~vtrvl~D~~~~~a~gv~~~~~~~~~~~v~a~kEVILSAGAi~SPQLLMLSGIGP 330 (623)
T KOG1238|consen 275 AAVTRVLIDPAGKRAKGVEFVRDGGKEHTVKARKEVILSAGAINSPQLLMLSGIGP 330 (623)
T ss_pred ceEEEEEEcCCCceEEEEEEEecCceeeeecccceEEEeccccCCHHHHHHcCCCc
Confidence 9999998873 222 222 233 4343 44 3499999998 899998888764
No 240
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.62 E-value=1.3e-06 Score=90.31 Aligned_cols=47 Identities=28% Similarity=0.439 Sum_probs=37.7
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC-cccCcccCCCcceE
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK-ELGMHQTGHNSGVV 106 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~-~~g~~~s~~~~g~~ 106 (473)
.+|||+|||+|++|..+|..+++. |++|+|||++. .+| .++.|.||+
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~--G~kV~lie~~~~~lG--GtCvn~GCi 162 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMER--GLKVIIFTGDDDSIG--GTCVNVGCI 162 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHC--CCcEEEEeCCCCccc--cceeEeCCc
Confidence 368999999999999999999999 99999999742 344 344555554
No 241
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.60 E-value=5.1e-07 Score=80.13 Aligned_cols=52 Identities=29% Similarity=0.465 Sum_probs=39.9
Q ss_pred HHHHHHHHcCcEEEeCceEEEEEEcCCeE-----EE---EcCCCcEEEcCEEEEcCCcCh
Q psy7710 209 VMGEEFCELGGEIRLNQQVESFKENPESV-----TI---STKQGDHLESSYALVCAGLQA 260 (473)
Q Consensus 209 ~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v-----~v---~~~~g~~i~ad~VV~aaG~~s 260 (473)
.+.+.+...+++++.+++|.++....+.+ .+ .+.++.++.+|+||+|+|...
T Consensus 63 ~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~ 122 (201)
T PF07992_consen 63 KLVDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRP 122 (201)
T ss_dssp HHHHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEE
T ss_pred ccccccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCcccc
Confidence 35556667899999999999999887742 22 445556899999999999664
No 242
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=98.59 E-value=8.5e-07 Score=92.75 Aligned_cols=43 Identities=30% Similarity=0.432 Sum_probs=38.6
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccC
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG 100 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~ 100 (473)
...+|+|||||++|+++|+.|++. |.+|+|+|+.+++||....
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~--g~~v~v~E~~~r~GGr~~t 279 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSM--GFKVVVLEGRARPGGRVKT 279 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC--CCcEEEEeccccCCCcccc
Confidence 467899999999999999999999 9999999999889877543
No 243
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.59 E-value=7.8e-07 Score=80.78 Aligned_cols=48 Identities=29% Similarity=0.453 Sum_probs=37.5
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC--cccCcccCCCcce
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK--ELGMHQTGHNSGV 105 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~--~~g~~~s~~~~g~ 105 (473)
..+||+|||+|++||.+|.+|+.+ |.+|+|+|+.. .+|+.+-..-+|+
T Consensus 4 ~~~dvivvgaglaglvaa~elA~a--G~~V~ildQEgeqnlGGQAfWSfGGL 53 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADA--GKRVLILDQEGEQNLGGQAFWSFGGL 53 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhc--CceEEEEcccccccccceeeeecccE
Confidence 468999999999999999999999 99999999864 2344443333333
No 244
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.59 E-value=1.9e-06 Score=86.87 Aligned_cols=36 Identities=31% Similarity=0.434 Sum_probs=33.4
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g 95 (473)
+||+|||+|++|+++|+.|+++ |++|+|||++...+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~--g~~v~~~e~~~~~~ 36 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDA--GLKVAMVEIGAADS 36 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHC--CCeEEEEeccCccC
Confidence 6999999999999999999999 99999999986655
No 245
>PLN02487 zeta-carotene desaturase
Probab=98.54 E-value=1.5e-06 Score=88.44 Aligned_cols=60 Identities=5% Similarity=0.148 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHcCcEEEeCceEEEEEEcC--C----eEEEEc---CCCcEEEcCEEEEcCCcC-hHHHH
Q psy7710 205 LVTRVMGEEFCELGGEIRLNQQVESFKENP--E----SVTIST---KQGDHLESSYALVCAGLQ-ADEMA 264 (473)
Q Consensus 205 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~--~----~v~v~~---~~g~~i~ad~VV~aaG~~-s~~l~ 264 (473)
.+.+.+.+.++++|++|+++++|++|..++ + .+.|++ .+++.+.+|.||+|++.+ ...|+
T Consensus 296 ~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Ll 365 (569)
T PLN02487 296 RLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLL 365 (569)
T ss_pred HHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhC
Confidence 488899999999999999999999998763 2 234555 334468899999999988 33443
No 246
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.54 E-value=1.4e-06 Score=87.23 Aligned_cols=53 Identities=11% Similarity=0.278 Sum_probs=43.9
Q ss_pred HHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710 208 RVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA 260 (473)
Q Consensus 208 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s 260 (473)
..+.+.+++.|+++++++.|+++..+++++.+.+.+|.++.+|.||+|+|...
T Consensus 211 ~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~p 263 (446)
T TIGR01424 211 ALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSP 263 (446)
T ss_pred HHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCc
Confidence 34566777889999999999999876666777776777899999999999874
No 247
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.54 E-value=4.5e-06 Score=83.97 Aligned_cols=43 Identities=33% Similarity=0.533 Sum_probs=35.9
Q ss_pred cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceE
Q psy7710 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVV 106 (473)
Q Consensus 59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~ 106 (473)
+|+|||||++|+++|..|++. |++|+|||++ .+|| ++.|.|++
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~--g~~V~lie~~-~~GG--~c~n~gci 44 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQN--GKNVTLIDEA-DLGG--TCLNEGCM 44 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhC--CCcEEEEECC-cccc--cCCCCccc
Confidence 699999999999999999999 9999999997 4543 34455554
No 248
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.54 E-value=2.7e-06 Score=85.84 Aligned_cols=39 Identities=38% Similarity=0.559 Sum_probs=34.7
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCc
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMH 97 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~ 97 (473)
.+|||+|||||++|+++|..|++. |.+|+|||++ .+|+.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~--g~~v~lie~~-~~GG~ 40 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKL--GKKVALIEKG-PLGGT 40 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHC--CCeEEEEeCC-ccccc
Confidence 458999999999999999999999 9999999995 66544
No 249
>KOG0685|consensus
Probab=98.53 E-value=5.4e-07 Score=86.05 Aligned_cols=54 Identities=26% Similarity=0.438 Sum_probs=42.3
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccC--CCcceEEeec
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG--HNSGVVHAGI 110 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~--~~~g~~~~~~ 110 (473)
...+|+|||||++|++||.+|.+++ ..+|+|+|..+++||+-.. ...+.+.-|.
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~g-f~~~~IlEa~dRIGGRI~ti~~~d~~ielGA 75 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENG-FIDVLILEASDRIGGRIHTIPFADGVIELGA 75 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhC-CceEEEEEeccccCceEeeEEcCCCeEeecc
Confidence 4568999999999999999999774 5799999999999987433 3444554443
No 250
>KOG2960|consensus
Probab=98.50 E-value=2e-07 Score=78.96 Aligned_cols=42 Identities=31% Similarity=0.488 Sum_probs=37.2
Q ss_pred cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcc
Q psy7710 57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQ 98 (473)
Q Consensus 57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~ 98 (473)
..||+|||+|-+||++||..+++.|.++|.|||..-.+|+|+
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGa 117 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGA 117 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcc
Confidence 569999999999999999999988999999999985566554
No 251
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.50 E-value=1.7e-06 Score=86.74 Aligned_cols=43 Identities=28% Similarity=0.489 Sum_probs=33.4
Q ss_pred cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceE
Q psy7710 57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVV 106 (473)
Q Consensus 57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~ 106 (473)
+||++|||+|++|..+|.. +. |++|++||++ .+|| ++.|.||+
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~--g~~V~lie~~-~~GG--tC~n~GCi 44 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FA--DKRIAIVEKG-TFGG--TCLNVGCI 44 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HC--CCeEEEEeCC-CCCC--eeeccCcc
Confidence 5899999999999998644 46 8999999997 5653 44555554
No 252
>PRK07846 mycothione reductase; Reviewed
Probab=98.50 E-value=1.7e-06 Score=86.67 Aligned_cols=44 Identities=27% Similarity=0.468 Sum_probs=34.2
Q ss_pred cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEE
Q psy7710 57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVH 107 (473)
Q Consensus 57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~ 107 (473)
+||++|||+|++|.++|.. +. |++|+|||++ .+|| ++.|.||+.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~--G~~V~lie~~-~~GG--tC~n~GCiP 44 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FA--DKRIAIVEKG-TFGG--TCLNVGCIP 44 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HC--CCeEEEEeCC-CCCC--cccCcCcch
Confidence 3899999999999998866 45 8999999997 5654 345556543
No 253
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.48 E-value=8.1e-07 Score=86.25 Aligned_cols=151 Identities=21% Similarity=0.279 Sum_probs=88.4
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCC-CcceEEeeccCCCchhHHHHHHHhHHHHHHHHH
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGH-NSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFD 134 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (473)
..|||+|||||.+|+.+|+..++. |.+++++--+..--+..|++ +-|.+..+
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARm--G~ktlLlT~~~dtig~msCNPaIGG~~KG------------------------- 55 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARM--GAKTLLLTLNLDTIGEMSCNPAIGGPGKG------------------------- 55 (621)
T ss_pred CCCceEEECCCccchHHHHhhhcc--CCeEEEEEcCCCceeecccccccCCcccc-------------------------
Confidence 459999999999999999999999 99999987653222223321 22211111
Q ss_pred hcCCCCcccCeEEEEeCcChhhHHHHHH-HHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHH
Q psy7710 135 KRNIPYKKCGKLIVALNEQLEPLHDLYE-RSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEE 213 (473)
Q Consensus 135 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~-~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 213 (473)
.+.-. .+.+...+. .....++ .++.++...- | +++.+ -.+.|-..|...+.+.
T Consensus 56 ----------~lvrE----IDALGG~Mg~~~D~~~I-Q~r~LN~sKG----P------AVra~-RaQaDk~~Y~~~mk~~ 109 (621)
T COG0445 56 ----------HLVRE----IDALGGLMGKAADKAGI-QFRMLNSSKG----P------AVRAP-RAQADKWLYRRAMKNE 109 (621)
T ss_pred ----------eeEEe----ehhccchHHHhhhhcCC-chhhccCCCc----c------hhcch-hhhhhHHHHHHHHHHH
Confidence 11100 111111111 1112233 3333332110 0 11111 1245666777788887
Q ss_pred HHH-cCcEEEeCceEEEEEEcCC--eEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710 214 FCE-LGGEIRLNQQVESFKENPE--SVTISTKQGDHLESSYALVCAGLQA 260 (473)
Q Consensus 214 ~~~-~Gv~i~~~~~V~~i~~~~~--~v~v~~~~g~~i~ad~VV~aaG~~s 260 (473)
++. .+..++ ...|+++..+++ .+.|.|.+|..+.|+.||++||.+-
T Consensus 110 le~~~NL~l~-q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTFL 158 (621)
T COG0445 110 LENQPNLHLL-QGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTFL 158 (621)
T ss_pred HhcCCCceeh-HhhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecccc
Confidence 775 467775 566778776554 3569999999999999999999763
No 254
>KOG0404|consensus
Probab=98.48 E-value=6.3e-07 Score=76.70 Aligned_cols=57 Identities=14% Similarity=0.169 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHH
Q psy7710 204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADE 262 (473)
Q Consensus 204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~ 262 (473)
..+++.+.++.++.|.+|++. .|.+++....-+.+.|+.+ .+.||.||+|+|+-+..
T Consensus 70 ~~l~d~mrkqs~r~Gt~i~tE-tVskv~~sskpF~l~td~~-~v~~~avI~atGAsAkR 126 (322)
T KOG0404|consen 70 PELMDKMRKQSERFGTEIITE-TVSKVDLSSKPFKLWTDAR-PVTADAVILATGASAKR 126 (322)
T ss_pred HHHHHHHHHHHHhhcceeeee-ehhhccccCCCeEEEecCC-ceeeeeEEEecccceee
Confidence 568888999999999999754 5888988888889998776 89999999999998743
No 255
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.47 E-value=1.2e-06 Score=87.44 Aligned_cols=46 Identities=11% Similarity=0.189 Sum_probs=37.4
Q ss_pred HHcCcEEEeCceEEEEEEcCCeEEEEcCC-Cc--EEEcCEEEEcCCcCh
Q psy7710 215 CELGGEIRLNQQVESFKENPESVTISTKQ-GD--HLESSYALVCAGLQA 260 (473)
Q Consensus 215 ~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~-g~--~i~ad~VV~aaG~~s 260 (473)
++.|++++.+++|++|+.+++.+.+.+.+ +. ++++|++|+|||...
T Consensus 69 ~~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~ 117 (438)
T PRK13512 69 DRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASA 117 (438)
T ss_pred HhCCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCC
Confidence 45699999999999999988888877643 22 468899999999874
No 256
>PLN03000 amine oxidase
Probab=98.47 E-value=6.3e-06 Score=86.43 Aligned_cols=43 Identities=33% Similarity=0.444 Sum_probs=38.9
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccC
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG 100 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~ 100 (473)
...+|+|||||++|+++|+.|++. |.+|+|+|+.+++||....
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~--G~~V~VlE~~~riGGRi~T 225 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRF--GFKVTVLEGRKRPGGRVYT 225 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHC--CCcEEEEEccCcCCCCcce
Confidence 457999999999999999999999 8999999999899987544
No 257
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.47 E-value=1.3e-06 Score=85.72 Aligned_cols=35 Identities=14% Similarity=0.418 Sum_probs=31.9
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~ 92 (473)
.+|+|||||++|+++|..|++.++..+|+||++++
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~ 37 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADS 37 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCC
Confidence 48999999999999999999887778999999874
No 258
>KOG4254|consensus
Probab=98.46 E-value=4.7e-07 Score=85.45 Aligned_cols=57 Identities=21% Similarity=0.198 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCe-EEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710 204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPES-VTISTKQGDHLESSYALVCAGLQA 260 (473)
Q Consensus 204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~-v~v~~~~g~~i~ad~VV~aaG~~s 260 (473)
..+..++++.+++.|.+|.++..|.+|..++++ +.|...+|++++++.||-.++.|-
T Consensus 264 Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~ 321 (561)
T KOG4254|consen 264 GAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWD 321 (561)
T ss_pred hHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHH
Confidence 567888999999999999999999999987765 459999999999999999999994
No 259
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.45 E-value=6.7e-07 Score=95.20 Aligned_cols=49 Identities=12% Similarity=0.217 Sum_probs=39.7
Q ss_pred eeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChH
Q psy7710 201 VDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD 261 (473)
Q Consensus 201 ~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~ 261 (473)
+.-..+.+.|.+.+.+.|++|+++++|+++.. ...++|.||.|+|.+|.
T Consensus 94 i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~------------~~~~~D~VVgADG~~S~ 142 (765)
T PRK08255 94 IGRKRLLNILQARCEELGVKLVFETEVPDDQA------------LAADADLVIASDGLNSR 142 (765)
T ss_pred CCHHHHHHHHHHHHHHcCCEEEeCCccCchhh------------hhcCCCEEEEcCCCCHH
Confidence 44577889999999999999999999876532 12478999999999973
No 260
>PLN02976 amine oxidase
Probab=98.44 E-value=2.4e-06 Score=92.56 Aligned_cols=42 Identities=24% Similarity=0.439 Sum_probs=37.7
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCccc
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQT 99 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s 99 (473)
...+|+|||||++|+++|+.|++. |.+|+|+|+.+.+||...
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~--G~~V~VlEa~~~vGGri~ 733 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQ--GFSVTVLEARSRIGGRVY 733 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHC--CCcEEEEeeccCCCCcee
Confidence 457999999999999999999999 899999999888887643
No 261
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.42 E-value=1.9e-06 Score=94.18 Aligned_cols=38 Identities=37% Similarity=0.525 Sum_probs=34.5
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g 95 (473)
..+||+|||||++|+++|+.|++. |.+|+|+|+++.+|
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~--G~~V~liD~~~~~G 199 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARA--GARVILVDEQPEAG 199 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCCC
Confidence 357999999999999999999999 99999999986654
No 262
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.41 E-value=1.8e-06 Score=92.14 Aligned_cols=38 Identities=29% Similarity=0.410 Sum_probs=34.1
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g 95 (473)
...+|+|||||++|+++|+.|+++ |++|+|+|+.+.+|
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~--G~~VtV~Ek~~~~G 575 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARA--GHPVTVFEREENAG 575 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHc--CCeEEEEecccccC
Confidence 456899999999999999999999 99999999986554
No 263
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.39 E-value=2.2e-06 Score=84.57 Aligned_cols=45 Identities=9% Similarity=0.207 Sum_probs=36.2
Q ss_pred HHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710 214 FCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA 260 (473)
Q Consensus 214 ~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s 260 (473)
+.+.|++++.++.|..+..++.. |.+.+|.++.+|++|+|||+..
T Consensus 68 ~~~~~i~~~~g~~V~~id~~~~~--v~~~~g~~~~yd~LViATGs~~ 112 (396)
T PRK09754 68 WQENNVHLHSGVTIKTLGRDTRE--LVLTNGESWHWDQLFIATGAAA 112 (396)
T ss_pred HHHCCCEEEcCCEEEEEECCCCE--EEECCCCEEEcCEEEEccCCCC
Confidence 34579999999999999876543 4445666899999999999875
No 264
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.39 E-value=1.3e-06 Score=85.19 Aligned_cols=48 Identities=6% Similarity=0.063 Sum_probs=37.3
Q ss_pred HHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710 210 MGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA 260 (473)
Q Consensus 210 l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s 260 (473)
+.+.+++.|++++. .+|++|+.+++. |.+.+|+++++|++|+|+|+..
T Consensus 60 ~~~~~~~~gv~~~~-~~v~~id~~~~~--V~~~~g~~~~yD~LviAtG~~~ 107 (364)
T TIGR03169 60 LRRLARQAGARFVI-AEATGIDPDRRK--VLLANRPPLSYDVLSLDVGSTT 107 (364)
T ss_pred HHHHHHhcCCEEEE-EEEEEEecccCE--EEECCCCcccccEEEEccCCCC
Confidence 45556678999876 489999877664 5566776899999999999864
No 265
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.38 E-value=3.8e-06 Score=84.62 Aligned_cols=63 Identities=22% Similarity=0.328 Sum_probs=48.7
Q ss_pred HHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChH-HH--HHhcCCC
Q psy7710 208 RVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD-EM--ALKSGCS 270 (473)
Q Consensus 208 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~-~l--~~~~g~~ 270 (473)
..+.+.++++|++++++++|.++..+++++.+.+.+|.++++|.||+|+|...+ .+ ++.+|++
T Consensus 222 ~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~ 287 (466)
T PRK07845 222 EVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVE 287 (466)
T ss_pred HHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCCCCCchhhCce
Confidence 346677788999999999999998766677777777778999999999998743 22 3455554
No 266
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.38 E-value=6e-06 Score=82.45 Aligned_cols=62 Identities=24% Similarity=0.418 Sum_probs=47.9
Q ss_pred HHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcC-hHHHHHhcCCCC
Q psy7710 208 RVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ-ADEMALKSGCSL 271 (473)
Q Consensus 208 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~-s~~l~~~~g~~~ 271 (473)
..+.+.+++.|+++++++.|.++..++. + +.+.+|.++.+|.||+|+|.. ...+++.+|+..
T Consensus 183 ~~~~~~l~~~gV~v~~~~~v~~i~~~~~-~-v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~ 245 (427)
T TIGR03385 183 QIVEEELKKHEINLRLNEEVDSIEGEER-V-KVFTSGGVYQADMVILATGIKPNSELAKDSGLKL 245 (427)
T ss_pred HHHHHHHHHcCCEEEeCCEEEEEecCCC-E-EEEcCCCEEEeCEEEECCCccCCHHHHHhcCccc
Confidence 3466677888999999999999976543 3 344556689999999999988 446778777654
No 267
>PRK12831 putative oxidoreductase; Provisional
Probab=98.37 E-value=8.6e-07 Score=88.91 Aligned_cols=38 Identities=26% Similarity=0.354 Sum_probs=34.2
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g 95 (473)
...||+|||||++|+++|++|++. |++|+|+|+.+.+|
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~--G~~V~v~e~~~~~G 176 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKM--GYDVTIFEALHEPG 176 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC--CCeEEEEecCCCCC
Confidence 457999999999999999999999 99999999975544
No 268
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=98.36 E-value=9.9e-06 Score=77.91 Aligned_cols=73 Identities=14% Similarity=0.227 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCC-cEEEcCEEEEcCCcCh----------HHHHHhcCCCC
Q psy7710 203 WGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQG-DHLESSYALVCAGLQA----------DEMALKSGCSL 271 (473)
Q Consensus 203 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g-~~i~ad~VV~aaG~~s----------~~l~~~~g~~~ 271 (473)
...+...|...+++.||+|+++++|++| +++++.+.+..+ ..++||.||+|+|+.| -.+++.+|+.+
T Consensus 85 A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG~s~p~~Gs~g~gy~la~~lGh~i 162 (376)
T TIGR03862 85 AAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGGASWSQLGSDGAWQQVLDQRGVSV 162 (376)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCCccccccCCCcHHHHHHHHCCCcc
Confidence 4678899999999999999999999999 334577776433 3699999999999854 37889999875
Q ss_pred CCceeee
Q psy7710 272 EPAIVPF 278 (473)
Q Consensus 272 ~~~~~p~ 278 (473)
- +.+|.
T Consensus 163 ~-~~~Pa 168 (376)
T TIGR03862 163 A-PFAPA 168 (376)
T ss_pred c-CCcCe
Confidence 3 33443
No 269
>PLN02507 glutathione reductase
Probab=98.35 E-value=5.7e-06 Score=83.86 Aligned_cols=55 Identities=11% Similarity=0.258 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710 206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA 260 (473)
Q Consensus 206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s 260 (473)
+...+.+.+++.|++++++++|+++..+++++.+.+.+|.++++|.||+|+|...
T Consensus 246 ~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~p 300 (499)
T PLN02507 246 MRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAP 300 (499)
T ss_pred HHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCC
Confidence 3344667778899999999999999876667777777777899999999999874
No 270
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.35 E-value=5e-06 Score=83.34 Aligned_cols=56 Identities=13% Similarity=0.192 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHcCcEEEeCceEEEEEEcCCe-EEEEcCCC-cEEEcCEEEEcCCcChH
Q psy7710 206 VTRVMGEEFCELGGEIRLNQQVESFKENPES-VTISTKQG-DHLESSYALVCAGLQAD 261 (473)
Q Consensus 206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~-v~v~~~~g-~~i~ad~VV~aaG~~s~ 261 (473)
+...+.+.++++|+++++++.|+++..++++ +.++..+| ..+.+|.||+|+|...+
T Consensus 209 ~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn 266 (450)
T TIGR01421 209 ISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPN 266 (450)
T ss_pred HHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcC
Confidence 3345677788899999999999999875433 56666666 57999999999998743
No 271
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.34 E-value=1e-06 Score=95.90 Aligned_cols=38 Identities=26% Similarity=0.390 Sum_probs=34.0
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g 95 (473)
...+|+|||||++||++|++|+++ |++|+|+|+.+.+|
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~--G~~VtV~E~~~~~G 466 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKY--GVDVTVYEALHVVG 466 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCCc
Confidence 356899999999999999999999 99999999986544
No 272
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.33 E-value=3.6e-06 Score=83.76 Aligned_cols=51 Identities=10% Similarity=0.034 Sum_probs=38.4
Q ss_pred HHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEc--------CCCcEEEcCEEEEcCCcCh
Q psy7710 209 VMGEEFCELGGEIRLNQQVESFKENPESVTIST--------KQGDHLESSYALVCAGLQA 260 (473)
Q Consensus 209 ~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~--------~~g~~i~ad~VV~aaG~~s 260 (473)
.+.+.+...|++++ ..+|++|+.+++.+.+.+ .+|.++.+|++|+|+|...
T Consensus 67 ~~~~~~~~~~~~~i-~~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~ 125 (424)
T PTZ00318 67 PVRPALAKLPNRYL-RAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARP 125 (424)
T ss_pred HHHHHhccCCeEEE-EEEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCccc
Confidence 35555666788875 578999998888777632 3455799999999999864
No 273
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.32 E-value=3e-06 Score=84.53 Aligned_cols=40 Identities=25% Similarity=0.238 Sum_probs=34.0
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g 95 (473)
...+|+|||||++|+++|+.|+++.+|.+|+|+|+.+.++
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg 64 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF 64 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence 4568999999999999999999733389999999986553
No 274
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.31 E-value=1.1e-06 Score=88.08 Aligned_cols=38 Identities=29% Similarity=0.390 Sum_probs=34.0
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g 95 (473)
...+|+|||||++|+++|+.|++. |.+|+|+|+.+.+|
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~--G~~V~vie~~~~~G 169 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKA--GHSVTVFEALHKPG 169 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC--CCcEEEEecCCCCC
Confidence 457999999999999999999999 99999999975444
No 275
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.31 E-value=1.4e-06 Score=93.00 Aligned_cols=38 Identities=26% Similarity=0.402 Sum_probs=33.8
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g 95 (473)
...+|+|||||++|+++|+.|+++ |++|+|+|+.+.+|
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~--G~~V~v~e~~~~~G 467 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKR--GYDVTVFEALHEIG 467 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC--CCeEEEEecCCCCC
Confidence 457999999999999999999999 99999999975443
No 276
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.30 E-value=8.2e-06 Score=82.35 Aligned_cols=54 Identities=28% Similarity=0.489 Sum_probs=42.0
Q ss_pred HHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEc--CCC--cEEEcCEEEEcCCcCh
Q psy7710 207 TRVMGEEFCELGGEIRLNQQVESFKENPESVTIST--KQG--DHLESSYALVCAGLQA 260 (473)
Q Consensus 207 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~--~~g--~~i~ad~VV~aaG~~s 260 (473)
...+.+.++++|++++++++|+++..+++.+.+.+ .+| .++++|.||+|+|...
T Consensus 216 ~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~p 273 (466)
T PRK07818 216 SKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAP 273 (466)
T ss_pred HHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCccc
Confidence 34466778889999999999999987666555443 245 3699999999999774
No 277
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=98.30 E-value=1.7e-06 Score=86.90 Aligned_cols=158 Identities=18% Similarity=0.274 Sum_probs=109.5
Q ss_pred CCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecccccccccCCCCCCcccEEEEcCChHHHHHHHHHHhcCCCCeEE
Q psy7710 7 PTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFFSMSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKIC 86 (473)
Q Consensus 7 ~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~ 86 (473)
...||.||+++|+-..... .-+.++........-++-...+... ......+|||||+-|+-+|..|... |++|.
T Consensus 99 ~~~YDkLilATGS~pfi~P--iPG~~~~~v~~~R~i~D~~am~~~a--r~~~~avVIGGGLLGlEaA~~L~~~--Gm~~~ 172 (793)
T COG1251 99 TVSYDKLIIATGSYPFILP--IPGSDLPGVFVYRTIDDVEAMLDCA--RNKKKAVVIGGGLLGLEAARGLKDL--GMEVT 172 (793)
T ss_pred EeecceeEEecCccccccC--CCCCCCCCeeEEecHHHHHHHHHHH--hccCCcEEEccchhhhHHHHHHHhC--CCceE
Confidence 5679999999996665444 2223322223233333222222221 1223479999999999999999999 99999
Q ss_pred EEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHhcCCCCcccCeEEEEeCcChhhHHHHHHHHHh
Q psy7710 87 LVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQ 166 (473)
Q Consensus 87 viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 166 (473)
|++=.+.+. .
T Consensus 173 Vvh~~~~lM--------------------------------------------------------------e-------- 182 (793)
T COG1251 173 VVHIAPTLM--------------------------------------------------------------E-------- 182 (793)
T ss_pred EEeecchHH--------------------------------------------------------------H--------
Confidence 997653110 0
Q ss_pred CCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcE
Q psy7710 167 NNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDH 246 (473)
Q Consensus 167 ~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~ 246 (473)
+-+++ .-...|.+.++++|++++++..++.+..++....++.++|..
T Consensus 183 ------rQLD~---------------------------~ag~lL~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~ 229 (793)
T COG1251 183 ------RQLDR---------------------------TAGRLLRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTE 229 (793)
T ss_pred ------Hhhhh---------------------------HHHHHHHHHHHhhcceeecccchhhhhcCcceeeEeecCCCc
Confidence 00010 012337777888999999999998888766667799999989
Q ss_pred EEcCEEEEcCCcC-hHHHHHhcCCCCCC
Q psy7710 247 LESSYALVCAGLQ-ADEMALKSGCSLEP 273 (473)
Q Consensus 247 i~ad~VV~aaG~~-s~~l~~~~g~~~~~ 273 (473)
+.||.||+|+|.. ...++...|+..+.
T Consensus 230 i~ad~VV~a~GIrPn~ela~~aGlavnr 257 (793)
T COG1251 230 IPADLVVMAVGIRPNDELAKEAGLAVNR 257 (793)
T ss_pred ccceeEEEecccccccHhHHhcCcCcCC
Confidence 9999999999998 67999999988755
No 278
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.30 E-value=8.4e-06 Score=82.40 Aligned_cols=54 Identities=17% Similarity=0.280 Sum_probs=40.6
Q ss_pred HHHHHHHHHHcCcEEEeCceEEEEEE--cCCeEEEEcCCC--cEEEcCEEEEcCCcCh
Q psy7710 207 TRVMGEEFCELGGEIRLNQQVESFKE--NPESVTISTKQG--DHLESSYALVCAGLQA 260 (473)
Q Consensus 207 ~~~l~~~~~~~Gv~i~~~~~V~~i~~--~~~~v~v~~~~g--~~i~ad~VV~aaG~~s 260 (473)
...+.+.+++.|++++++++|+++.. +++...+.+.+| .++.+|.||+|+|...
T Consensus 224 ~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p 281 (472)
T PRK05976 224 SKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRP 281 (472)
T ss_pred HHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCcc
Confidence 34466677888999999999999985 344333444455 3689999999999874
No 279
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.30 E-value=2.4e-06 Score=91.50 Aligned_cols=38 Identities=24% Similarity=0.366 Sum_probs=34.1
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g 95 (473)
...+|+|||||++|+++|+.|++. |++|+|+|+.+.+|
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~--G~~VTV~Ek~~~lG 573 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARA--GHPVTVFEKKEKPG 573 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHC--CCeEEEEecccccC
Confidence 357999999999999999999999 99999999986544
No 280
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.29 E-value=5.1e-06 Score=82.57 Aligned_cols=106 Identities=23% Similarity=0.347 Sum_probs=81.9
Q ss_pred cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHhc
Q psy7710 57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDKR 136 (473)
Q Consensus 57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (473)
..+++|||+|.+|+.+|..|+++ |++|+++|+.+++++..
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~--G~~v~l~e~~~~~~~~~-------------------------------------- 175 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKR--GKKVTLIEAADRLGGQL-------------------------------------- 175 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHc--CCeEEEEEcccccchhh--------------------------------------
Confidence 46899999999999999999999 99999999986443110
Q ss_pred CCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHHHH
Q psy7710 137 NIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCE 216 (473)
Q Consensus 137 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 216 (473)
+ . ..+...+.+.+++
T Consensus 176 --------------------------------------~--------------------------~-~~~~~~~~~~l~~ 190 (415)
T COG0446 176 --------------------------------------L--------------------------D-PEVAEELAELLEK 190 (415)
T ss_pred --------------------------------------h--------------------------h-HHHHHHHHHHHHH
Confidence 0 0 1244557778888
Q ss_pred cCcEEEeCceEEEEEEcCCeEE---EEcCCCcEEEcCEEEEcCCcCh-HHHHHhc
Q psy7710 217 LGGEIRLNQQVESFKENPESVT---ISTKQGDHLESSYALVCAGLQA-DEMALKS 267 (473)
Q Consensus 217 ~Gv~i~~~~~V~~i~~~~~~v~---v~~~~g~~i~ad~VV~aaG~~s-~~l~~~~ 267 (473)
.|+++++++.+.+|...++... +.+.++..+++|.++++.|... ..+.+..
T Consensus 191 ~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~~~l~~~~ 245 (415)
T COG0446 191 YGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNVVLANDA 245 (415)
T ss_pred CCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccccHHHHhhC
Confidence 9999999999999998765433 4566666899999999999886 4555543
No 281
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.29 E-value=7.4e-06 Score=82.59 Aligned_cols=52 Identities=13% Similarity=0.217 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCC--C--cEEEcCEEEEcCCcCh
Q psy7710 208 RVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQ--G--DHLESSYALVCAGLQA 260 (473)
Q Consensus 208 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~--g--~~i~ad~VV~aaG~~s 260 (473)
..+.+.++++ +++++++.|+++..+++++.++..+ + .++++|.||+|+|...
T Consensus 219 ~~~~~~l~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p 274 (471)
T PRK06467 219 KVFTKRIKKQ-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVP 274 (471)
T ss_pred HHHHHHHhhc-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccc
Confidence 3456667777 9999999999998766666655432 2 3699999999999874
No 282
>KOG0029|consensus
Probab=98.28 E-value=8.9e-07 Score=88.44 Aligned_cols=42 Identities=24% Similarity=0.439 Sum_probs=38.8
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCccc
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQT 99 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s 99 (473)
...+|+|||||++|++||.+|.+. |.+|+|+|+.+++||+..
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~--G~~V~VLEARdRvGGRI~ 55 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDF--GFDVLVLEARDRVGGRIY 55 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHc--CCceEEEeccCCcCceeE
Confidence 567999999999999999999999 999999999999998753
No 283
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.28 E-value=9.7e-06 Score=80.67 Aligned_cols=61 Identities=13% Similarity=0.264 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCC
Q psy7710 206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCS 270 (473)
Q Consensus 206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~ 270 (473)
+.+.+.+.++++|++++++++|+++..+ . |.+++|+++++|.||+|+|...+.+.+.+|++
T Consensus 230 ~~~~~~~~L~~~gV~v~~~~~v~~v~~~--~--v~~~~g~~i~~d~vi~~~G~~~~~~~~~~~l~ 290 (424)
T PTZ00318 230 LRKYGQRRLRRLGVDIRTKTAVKEVLDK--E--VVLKDGEVIPTGLVVWSTGVGPGPLTKQLKVD 290 (424)
T ss_pred HHHHHHHHHHHCCCEEEeCCeEEEEeCC--E--EEECCCCEEEccEEEEccCCCCcchhhhcCCc
Confidence 3445677788899999999999998643 2 55667778999999999998766677766654
No 284
>PRK06370 mercuric reductase; Validated
Probab=98.27 E-value=1.2e-05 Score=81.19 Aligned_cols=53 Identities=17% Similarity=0.250 Sum_probs=40.6
Q ss_pred HHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEc---CCCcEEEcCEEEEcCCcCh
Q psy7710 208 RVMGEEFCELGGEIRLNQQVESFKENPESVTIST---KQGDHLESSYALVCAGLQA 260 (473)
Q Consensus 208 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~---~~g~~i~ad~VV~aaG~~s 260 (473)
..+.+.+++.|++++++++|.++..+++++.+.. .++.++.+|.||+|+|...
T Consensus 216 ~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~p 271 (463)
T PRK06370 216 AAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVP 271 (463)
T ss_pred HHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCc
Confidence 3466677789999999999999987765544332 2335799999999999774
No 285
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.27 E-value=1.2e-05 Score=80.79 Aligned_cols=54 Identities=11% Similarity=0.246 Sum_probs=41.7
Q ss_pred HHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCC-cEEEcCEEEEcCCcCh
Q psy7710 207 TRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQG-DHLESSYALVCAGLQA 260 (473)
Q Consensus 207 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g-~~i~ad~VV~aaG~~s 260 (473)
.+.+.+.+++.|++++++++|+++..++..+.+.+++. .++.+|.||+|+|...
T Consensus 214 ~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p 268 (458)
T PRK06912 214 AHILREKLENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKP 268 (458)
T ss_pred HHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCcc
Confidence 34466777888999999999999987666665554322 3689999999999774
No 286
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.27 E-value=2.9e-06 Score=85.28 Aligned_cols=38 Identities=24% Similarity=0.408 Sum_probs=33.9
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g 95 (473)
...+|+|||||++|+++|+.|+++ |.+|+|+|+.+.+|
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~--g~~V~lie~~~~~g 176 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARK--GYDVTIFEARDKAG 176 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhC--CCeEEEEccCCCCC
Confidence 457899999999999999999999 89999999986543
No 287
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.25 E-value=4.4e-06 Score=89.24 Aligned_cols=47 Identities=13% Similarity=0.197 Sum_probs=38.1
Q ss_pred HHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710 212 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA 260 (473)
Q Consensus 212 ~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s 260 (473)
+.+++.|++++++++|++|+.+.. .|.+.+|.++.+|++|+|||...
T Consensus 62 ~~~~~~gv~~~~g~~V~~Id~~~k--~V~~~~g~~~~yD~LVlATGs~p 108 (785)
T TIGR02374 62 DWYEKHGITLYTGETVIQIDTDQK--QVITDAGRTLSYDKLILATGSYP 108 (785)
T ss_pred HHHHHCCCEEEcCCeEEEEECCCC--EEEECCCcEeeCCEEEECCCCCc
Confidence 345668999999999999987654 45667777899999999999864
No 288
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.23 E-value=1.3e-05 Score=80.93 Aligned_cols=54 Identities=20% Similarity=0.355 Sum_probs=41.8
Q ss_pred HHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCC--C--cEEEcCEEEEcCCcCh
Q psy7710 207 TRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQ--G--DHLESSYALVCAGLQA 260 (473)
Q Consensus 207 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~--g--~~i~ad~VV~aaG~~s 260 (473)
...+.+.++++|++++++++|+++..+++.+.+...+ | .++++|.||+|+|...
T Consensus 227 ~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p 284 (475)
T PRK06327 227 AKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVP 284 (475)
T ss_pred HHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCcc
Confidence 3446667778899999999999998776666655332 3 4689999999999874
No 289
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.22 E-value=1.8e-05 Score=79.79 Aligned_cols=53 Identities=17% Similarity=0.405 Sum_probs=40.4
Q ss_pred HHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEc-----CCCcEEEcCEEEEcCCcCh
Q psy7710 208 RVMGEEFCELGGEIRLNQQVESFKENPESVTIST-----KQGDHLESSYALVCAGLQA 260 (473)
Q Consensus 208 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~-----~~g~~i~ad~VV~aaG~~s 260 (473)
..+.+.+++.|+++++++.|+++..+++++.+.. .++..+.+|.||+|+|...
T Consensus 219 ~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p 276 (466)
T PRK06115 219 KTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRP 276 (466)
T ss_pred HHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCcc
Confidence 4466777888999999999999987655554432 1235799999999999874
No 290
>KOG1336|consensus
Probab=98.22 E-value=9.6e-06 Score=77.78 Aligned_cols=55 Identities=20% Similarity=0.337 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHcCcEEEeCceEEEEEEcC-C-eEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710 206 VTRVMGEEFCELGGEIRLNQQVESFKENP-E-SVTISTKQGDHLESSYALVCAGLQA 260 (473)
Q Consensus 206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~-~-~v~v~~~~g~~i~ad~VV~aaG~~s 260 (473)
+.+.+.++++++|++++.++.+.++..+. + ...|.+.+|.++.||.||+++|+-.
T Consensus 257 i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p 313 (478)
T KOG1336|consen 257 IGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKP 313 (478)
T ss_pred HHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccc
Confidence 44557788899999999999999998765 3 3458899999999999999999873
No 291
>PRK07846 mycothione reductase; Reviewed
Probab=98.21 E-value=1.7e-05 Score=79.57 Aligned_cols=45 Identities=22% Similarity=0.350 Sum_probs=38.6
Q ss_pred HcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710 216 ELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA 260 (473)
Q Consensus 216 ~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s 260 (473)
+.|++++++++|+++..+++++.+.+.+|.++++|.||+|+|...
T Consensus 218 ~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~p 262 (451)
T PRK07846 218 SKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVP 262 (451)
T ss_pred hcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCcc
Confidence 468999999999999877667777777777899999999999874
No 292
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.20 E-value=2.9e-05 Score=75.10 Aligned_cols=43 Identities=23% Similarity=0.413 Sum_probs=34.9
Q ss_pred cccEEEEcCChHHHHHHHHHHhcCCC-CeEEEEeccCcccCccc
Q psy7710 57 LYDVVVVGGGIVGVATARELKLNYPK-MKICLVEKEKELGMHQT 99 (473)
Q Consensus 57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G-~~V~viE~~~~~g~~~s 99 (473)
+++|+|||+|.+|+.+|.+|.+.... .+|.|+|+.+.+|.|..
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~Gia 44 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIA 44 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCcc
Confidence 36899999999999999999876422 23999999988876643
No 293
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.16 E-value=2.6e-06 Score=77.24 Aligned_cols=42 Identities=24% Similarity=0.459 Sum_probs=38.6
Q ss_pred cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccC
Q psy7710 57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG 100 (473)
Q Consensus 57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~ 100 (473)
++|++|||||++|+.+|..|++. |.+|+||||++.+||.+-.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~--gk~VLIvekR~HIGGNaYd 42 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQL--GKRVLIVEKRNHIGGNAYD 42 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHc--CCEEEEEeccccCCCcccc
Confidence 47999999999999999999999 9999999999999988744
No 294
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.14 E-value=1.3e-05 Score=77.86 Aligned_cols=38 Identities=26% Similarity=0.330 Sum_probs=33.7
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g 95 (473)
...+|+|||+|++|+++|..|++. |.+|+++|+.+.++
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~--g~~v~lie~~~~~g 54 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACL--GYEVHVYDKLPEPG 54 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCCCCC
Confidence 346899999999999999999999 89999999986543
No 295
>KOG1346|consensus
Probab=98.13 E-value=1.5e-05 Score=74.65 Aligned_cols=78 Identities=19% Similarity=0.263 Sum_probs=68.0
Q ss_pred ceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcC-hHHHHHhcCCCCCCceee
Q psy7710 200 IVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ-ADEMALKSGCSLEPAIVP 277 (473)
Q Consensus 200 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~-s~~l~~~~g~~~~~~~~p 277 (473)
.+-|.-+.++-.+.+++.||.++-|..|.++....+.+.++.++|.+++.|.||+|+|.- ..+|++..|+++|..+-.
T Consensus 389 kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lGG 467 (659)
T KOG1346|consen 389 KILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELAEASGLEIDEKLGG 467 (659)
T ss_pred hhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCchhhcccccceeecccCc
Confidence 355777888889999999999999999999998888889999999999999999999988 678999999887655443
No 296
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.13 E-value=2.8e-05 Score=78.45 Aligned_cols=55 Identities=15% Similarity=0.243 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHcCcEEEeCceEEEEEEcCC-eEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710 206 VTRVMGEEFCELGGEIRLNQQVESFKENPE-SVTISTKQGDHLESSYALVCAGLQA 260 (473)
Q Consensus 206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~-~v~v~~~~g~~i~ad~VV~aaG~~s 260 (473)
+.+.+.+.++++|+++++++.|+++..+++ ...+.+.++.++++|.||+|+|...
T Consensus 233 ~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~P 288 (486)
T TIGR01423 233 LRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVP 288 (486)
T ss_pred HHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCc
Confidence 344577778889999999999999986543 3556666666899999999999774
No 297
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.12 E-value=3.2e-05 Score=75.38 Aligned_cols=36 Identities=31% Similarity=0.393 Sum_probs=32.6
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g 95 (473)
.||+|||||++|+.+|+.|+++ |.+|+|+|+.+..+
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~--G~~V~LiE~rp~~~ 36 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQA--GVPVILYEMRPEKL 36 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhC--CCcEEEEecccccc
Confidence 4799999999999999999999 99999999876543
No 298
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.12 E-value=3.3e-05 Score=78.06 Aligned_cols=54 Identities=17% Similarity=0.153 Sum_probs=41.8
Q ss_pred HHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCC---cEEEcCEEEEcCCcCh
Q psy7710 207 TRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQG---DHLESSYALVCAGLQA 260 (473)
Q Consensus 207 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g---~~i~ad~VV~aaG~~s 260 (473)
...+.+.++++|+++++++.+.++...++.+.|+..++ .++.+|.||+|+|...
T Consensus 223 ~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~p 279 (484)
T TIGR01438 223 ANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDA 279 (484)
T ss_pred HHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCc
Confidence 34466778889999999999999987666655554433 3799999999999874
No 299
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.11 E-value=3.6e-05 Score=77.19 Aligned_cols=45 Identities=22% Similarity=0.393 Sum_probs=38.3
Q ss_pred HcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710 216 ELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA 260 (473)
Q Consensus 216 ~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s 260 (473)
+.|+++++++.|+++..+++++.+++.+|.++++|.||+|+|...
T Consensus 221 ~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~p 265 (452)
T TIGR03452 221 KKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVP 265 (452)
T ss_pred hcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCc
Confidence 458999999999999877767777777777899999999999874
No 300
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.11 E-value=1.8e-05 Score=84.73 Aligned_cols=47 Identities=9% Similarity=0.157 Sum_probs=37.5
Q ss_pred HHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710 212 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA 260 (473)
Q Consensus 212 ~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s 260 (473)
+.+++.|++++.++.|++|..+.. .|.+.+|..+.+|++|+|||...
T Consensus 67 ~~~~~~gI~~~~g~~V~~Id~~~~--~V~~~~G~~i~yD~LVIATGs~p 113 (847)
T PRK14989 67 GFYEKHGIKVLVGERAITINRQEK--VIHSSAGRTVFYDKLIMATGSYP 113 (847)
T ss_pred HHHHhCCCEEEcCCEEEEEeCCCc--EEEECCCcEEECCEEEECCCCCc
Confidence 345567999999999999977543 45567777899999999999874
No 301
>PLN02546 glutathione reductase
Probab=98.10 E-value=4.2e-05 Score=78.19 Aligned_cols=65 Identities=14% Similarity=0.215 Sum_probs=46.5
Q ss_pred HHHHHHHHHHcCcEEEeCceEEEEEEc-CCeEEEEcCCCcEEEcCEEEEcCCcChH-HH--HHhcCCCC
Q psy7710 207 TRVMGEEFCELGGEIRLNQQVESFKEN-PESVTISTKQGDHLESSYALVCAGLQAD-EM--ALKSGCSL 271 (473)
Q Consensus 207 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v~v~~~~g~~i~ad~VV~aaG~~s~-~l--~~~~g~~~ 271 (473)
...+.+.++++|+++++++.|.++..+ ++.+.+.++++....+|.||+|+|...+ .+ ++.+|++.
T Consensus 296 ~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~ 364 (558)
T PLN02546 296 RDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKM 364 (558)
T ss_pred HHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcC
Confidence 344667778899999999999999764 3445666666633448999999998843 22 45666654
No 302
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.09 E-value=8.6e-06 Score=85.24 Aligned_cols=38 Identities=18% Similarity=0.344 Sum_probs=34.0
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g 95 (473)
...+|+|||||++|+++|+.|++. |.+|+|+|+.+.+|
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~--G~~Vtv~e~~~~~G 229 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRK--GHDVTIFDANEQAG 229 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCCC
Confidence 346899999999999999999999 99999999986554
No 303
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.09 E-value=1.1e-05 Score=81.20 Aligned_cols=38 Identities=26% Similarity=0.448 Sum_probs=33.9
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g 95 (473)
...+|+|||+|++|+++|+.|++. |.+|+|+|+.+.+|
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~--G~~V~i~e~~~~~g 177 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARA--GVQVVVFDRHPEIG 177 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCC
Confidence 456899999999999999999999 89999999986554
No 304
>PTZ00058 glutathione reductase; Provisional
Probab=98.09 E-value=4.5e-05 Score=77.96 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=40.8
Q ss_pred HHHHHHHHHHcCcEEEeCceEEEEEEcCC-eEEEEc-CCCcEEEcCEEEEcCCcCh
Q psy7710 207 TRVMGEEFCELGGEIRLNQQVESFKENPE-SVTIST-KQGDHLESSYALVCAGLQA 260 (473)
Q Consensus 207 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~-~v~v~~-~~g~~i~ad~VV~aaG~~s 260 (473)
.+.+.+.+++.|+++++++.|.++..+++ ++.+.. .++.++++|.||+|+|...
T Consensus 281 ~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~P 336 (561)
T PTZ00058 281 INELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSP 336 (561)
T ss_pred HHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCC
Confidence 34466778889999999999999986543 455443 3334799999999999763
No 305
>KOG2311|consensus
Probab=98.08 E-value=1.6e-05 Score=75.77 Aligned_cols=151 Identities=20% Similarity=0.282 Sum_probs=84.3
Q ss_pred CCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc-CcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHH
Q psy7710 55 PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE-KELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYF 133 (473)
Q Consensus 55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~-~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (473)
...+||||||||.+|+.+|...++. |.+.+++-.+ +.+|.-+...+.|.+..+.....
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~--Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrE------------------- 84 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARL--GARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMRE------------------- 84 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhc--CCceEEeecccccccccccCcccCCcccceeeee-------------------
Confidence 3679999999999999999999999 8999998865 24444333344444332211000
Q ss_pred HhcCCCCcccCeEEEEeCcChhhHHHHHH-HHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHH
Q psy7710 134 DKRNIPYKKCGKLIVALNEQLEPLHDLYE-RSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGE 212 (473)
Q Consensus 134 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~-~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~ 212 (473)
.+.+..... .+...++ ..+.++... --++|.+. .++|-..|...+.+
T Consensus 85 --------------------VDALdGl~~rvcD~s~v-q~k~LNrs~----------GPAVwg~R-AQiDR~lYkk~MQk 132 (679)
T KOG2311|consen 85 --------------------VDALDGLCSRVCDQSGV-QYKVLNRSK----------GPAVWGLR-AQIDRKLYKKNMQK 132 (679)
T ss_pred --------------------ehhhcchHhhhhhhhhh-hHHHhhccC----------CCcccChH-HhhhHHHHHHHHHH
Confidence 000110000 0011111 111111100 01233332 24565666677776
Q ss_pred HHHH-cCcEEEeCceEEEEEEc-CC-----eEEEEcCCCcEEEcCEEEEcCCcC
Q psy7710 213 EFCE-LGGEIRLNQQVESFKEN-PE-----SVTISTKQGDHLESSYALVCAGLQ 259 (473)
Q Consensus 213 ~~~~-~Gv~i~~~~~V~~i~~~-~~-----~v~v~~~~g~~i~ad~VV~aaG~~ 259 (473)
.+.. .+.+|+. ..|.++... ++ ...|.+.+|..+.|+.||++||.+
T Consensus 133 ei~st~nL~ire-~~V~dliv~~~~~~~~~~~gV~l~dgt~v~a~~VilTTGTF 185 (679)
T KOG2311|consen 133 EISSTPNLEIRE-GAVADLIVEDPDDGHCVVSGVVLVDGTVVYAESVILTTGTF 185 (679)
T ss_pred HhccCCcchhhh-hhhhheeeccCCCCceEEEEEEEecCcEeccceEEEeeccc
Confidence 6643 4667764 445565533 22 234778889899999999999976
No 306
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.07 E-value=1.2e-05 Score=80.99 Aligned_cols=38 Identities=32% Similarity=0.476 Sum_probs=34.0
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g 95 (473)
...+|+|||+|++|+++|+.|+++ |.+|+|+|+.+.+|
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~--G~~V~vie~~~~~G 179 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARA--GHKVTVFERADRIG 179 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC--CCcEEEEecCCCCC
Confidence 457999999999999999999999 89999999986544
No 307
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.06 E-value=1.1e-05 Score=84.69 Aligned_cols=38 Identities=26% Similarity=0.465 Sum_probs=34.0
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g 95 (473)
...+|+|||||++|+++|+.|++. |.+|+|+|+.+.+|
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~--G~~V~V~E~~~~~G 363 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARN--GVAVTVYDRHPEIG 363 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEecCCCCC
Confidence 356899999999999999999999 99999999986554
No 308
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.05 E-value=4.9e-06 Score=80.26 Aligned_cols=40 Identities=28% Similarity=0.512 Sum_probs=36.2
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCccc
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQT 99 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s 99 (473)
+||+|||||++|+++|++|++. |.+|+|+|+++.+|+.+.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~--G~~V~viEk~~~iGG~~~ 41 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQL--NKRVLVVEKRNHIGGNCY 41 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhC--CCeEEEEecCCCCCCcee
Confidence 6999999999999999999998 899999999877887543
No 309
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.05 E-value=1.8e-05 Score=76.21 Aligned_cols=52 Identities=13% Similarity=0.249 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHcC-cEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710 206 VTRVMGEEFCELG-GEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA 260 (473)
Q Consensus 206 ~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s 260 (473)
....+.+.+++.+ ++++ ..+|++|+.+++.|.+. ++..+.+|++|+|.|+..
T Consensus 59 i~~p~~~~~~~~~~v~~~-~~~V~~ID~~~k~V~~~--~~~~i~YD~LVvalGs~~ 111 (405)
T COG1252 59 IAIPLRALLRKSGNVQFV-QGEVTDIDRDAKKVTLA--DLGEISYDYLVVALGSET 111 (405)
T ss_pred eeccHHHHhcccCceEEE-EEEEEEEcccCCEEEeC--CCccccccEEEEecCCcC
Confidence 3334666666555 7776 56799999888776554 344899999999999875
No 310
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=5.5e-06 Score=80.77 Aligned_cols=38 Identities=32% Similarity=0.469 Sum_probs=35.6
Q ss_pred cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcc
Q psy7710 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQ 98 (473)
Q Consensus 59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~ 98 (473)
+|+|+|||++||+||++|+++ |++|+|+|+++.+||-+
T Consensus 2 rVai~GaG~AgL~~a~~La~~--g~~vt~~ea~~~~GGk~ 39 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADA--GYDVTLYEARDRLGGKV 39 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhC--CCceEEEeccCccCcee
Confidence 699999999999999999999 99999999998888764
No 311
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=1.5e-05 Score=73.07 Aligned_cols=57 Identities=7% Similarity=0.119 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceEEEEEEc---CCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710 204 GLVTRVMGEEFCELGGEIRLNQQVESFKEN---PESVTISTKQGDHLESSYALVCAGLQA 260 (473)
Q Consensus 204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~---~~~v~v~~~~g~~i~ad~VV~aaG~~s 260 (473)
+++...|.+..++..+.++.-.+++++... ++-..|++.+|..++++.||+++|+.=
T Consensus 266 pkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArW 325 (520)
T COG3634 266 PKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARW 325 (520)
T ss_pred hHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcch
Confidence 567788888888888998888888888864 345679999998999999999999864
No 312
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.99 E-value=0.00015 Score=74.67 Aligned_cols=59 Identities=10% Similarity=0.039 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHcCcEEEeCceEEEEEEc-CCeE-EEE---cCCC--cEEEcCEEEEcCCcChH
Q psy7710 203 WGLVTRVMGEEFCELGGEIRLNQQVESFKEN-PESV-TIS---TKQG--DHLESSYALVCAGLQAD 261 (473)
Q Consensus 203 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v-~v~---~~~g--~~i~ad~VV~aaG~~s~ 261 (473)
...+...|.+.+++.|++++.++.++++..+ ++.+ .|. ..+| ..+.|+.||+|||+++.
T Consensus 125 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 190 (570)
T PRK05675 125 GHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGR 190 (570)
T ss_pred HHHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCccc
Confidence 4678889999898899999999999999875 4443 232 3455 35789999999999874
No 313
>KOG0405|consensus
Probab=97.99 E-value=9.3e-05 Score=68.00 Aligned_cols=49 Identities=37% Similarity=0.511 Sum_probs=41.3
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEe
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHA 108 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~ 108 (473)
.+||.+|||||-.|+++|.+.++. |.+|.|+|.. .+-|.++.|.|++..
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~--GAkv~l~E~~--f~lGGTCVn~GCVPK 67 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASH--GAKVALCELP--FGLGGTCVNVGCVPK 67 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhc--CceEEEEecC--CCcCceEEeeccccc
Confidence 589999999999999999999999 9999999986 344566677777643
No 314
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.98 E-value=9.9e-05 Score=69.84 Aligned_cols=32 Identities=34% Similarity=0.427 Sum_probs=29.9
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE 91 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~ 91 (473)
.+|+|||+|.+|+-+|..|++. +.+|+++++.
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~--~~~V~~v~~~ 173 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRI--AKKVTLVHRR 173 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhh--cCEEEEEEeC
Confidence 5799999999999999999998 8999999986
No 315
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.96 E-value=0.0012 Score=64.68 Aligned_cols=40 Identities=28% Similarity=0.308 Sum_probs=33.7
Q ss_pred ccEEEEcCChHHHHHHHHHHhcC--CCCeEEEEeccCcccCc
Q psy7710 58 YDVVVVGGGIVGVATARELKLNY--PKMKICLVEKEKELGMH 97 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~--~G~~V~viE~~~~~g~~ 97 (473)
.++-|||+|+++|++|.+|-+.+ ||.+|+|+|+.+..||.
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGs 44 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGS 44 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCc
Confidence 46789999999999999998764 68899999999655554
No 316
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.96 E-value=1.8e-05 Score=82.85 Aligned_cols=38 Identities=24% Similarity=0.415 Sum_probs=34.0
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g 95 (473)
...+|+|||+|++|+++|+.|++. |.+|+|+|+.+.+|
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~--G~~Vtv~e~~~~~G 346 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARA--GVQVDVFDRHPEIG 346 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHc--CCcEEEEeCCCCCC
Confidence 357899999999999999999999 89999999986543
No 317
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.95 E-value=2.4e-05 Score=79.09 Aligned_cols=37 Identities=32% Similarity=0.460 Sum_probs=33.4
Q ss_pred cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710 57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95 (473)
Q Consensus 57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g 95 (473)
..+|+|||+|++|+++|..|+++ |.+|+|+|+.+.+|
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~--g~~V~v~e~~~~~g 179 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRA--GHTVTVFEREDRCG 179 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc--CCeEEEEecCCCCC
Confidence 46899999999999999999999 89999999986544
No 318
>KOG1276|consensus
Probab=97.95 E-value=1e-05 Score=76.29 Aligned_cols=42 Identities=36% Similarity=0.446 Sum_probs=37.5
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCc
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMH 97 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~ 97 (473)
...+|+|||||++||++||+|++++|...|+|+|+.+++||-
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGw 51 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGW 51 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccce
Confidence 357899999999999999999999777788889999988865
No 319
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.95 E-value=1.3e-05 Score=76.73 Aligned_cols=37 Identities=22% Similarity=0.383 Sum_probs=27.1
Q ss_pred cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcc
Q psy7710 57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKEL 94 (473)
Q Consensus 57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~ 94 (473)
.+|+++||.|+++|++|..|.+.. ..++..+|+.+.+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~-~~~~~f~e~~~~f 38 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHG-DLKALFLERRPSF 38 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH----EEEEES-SS-
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcC-CCCEEEEecCCCC
Confidence 479999999999999999999884 4899999998643
No 320
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.91 E-value=0.00015 Score=73.16 Aligned_cols=53 Identities=19% Similarity=0.311 Sum_probs=39.2
Q ss_pred HHHHHHHHHHcCcEEEeCceEEEEEEcCC-eEEEEc--CCCcEEEcCEEEEcCCcCh
Q psy7710 207 TRVMGEEFCELGGEIRLNQQVESFKENPE-SVTIST--KQGDHLESSYALVCAGLQA 260 (473)
Q Consensus 207 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~-~v~v~~--~~g~~i~ad~VV~aaG~~s 260 (473)
...+.+.++++ ++++++++|.++..+++ .+.++. .++.++.+|.||+|+|...
T Consensus 213 ~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p 268 (460)
T PRK06292 213 SKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRP 268 (460)
T ss_pred HHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCcc
Confidence 34466677778 99999999999987654 455433 2334799999999999863
No 321
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.89 E-value=0.0002 Score=69.95 Aligned_cols=59 Identities=19% Similarity=0.194 Sum_probs=45.8
Q ss_pred HHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCC
Q psy7710 208 RVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCS 270 (473)
Q Consensus 208 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~ 270 (473)
..+.+.++++|++++++++|+++..+ .|.+.+|.++.+|.||+|+|.....++...|+.
T Consensus 195 ~~~~~~l~~~gV~v~~~~~v~~i~~~----~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~gl~ 253 (364)
T TIGR03169 195 RLVLRLLARRGIEVHEGAPVTRGPDG----ALILADGRTLPADAILWATGARAPPWLAESGLP 253 (364)
T ss_pred HHHHHHHHHCCCEEEeCCeeEEEcCC----eEEeCCCCEEecCEEEEccCCChhhHHHHcCCC
Confidence 34667778899999999999988532 355667778999999999998866666666654
No 322
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.86 E-value=1.7e-05 Score=75.88 Aligned_cols=40 Identities=40% Similarity=0.603 Sum_probs=37.2
Q ss_pred cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcc
Q psy7710 57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQ 98 (473)
Q Consensus 57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~ 98 (473)
.-+++|||||++|+++|+.|++. |.+|.++||++.+||..
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~--G~~v~LVEKepsiGGrm 163 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADM--GFKVYLVEKEPSIGGRM 163 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHc--CCeEEEEecCCcccccH
Confidence 45799999999999999999999 99999999999998874
No 323
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.84 E-value=0.00017 Score=74.88 Aligned_cols=34 Identities=18% Similarity=0.182 Sum_probs=30.5
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCc
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKE 93 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~ 93 (473)
.+|+|||||.+|+..|..|++. |.+|+++|+.+.
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~--G~eVTLIe~~~~ 346 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTAL--GSEVVSFEYSPQ 346 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhC--CCeEEEEeccCc
Confidence 4799999999999999999998 899999998753
No 324
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=97.84 E-value=5.2e-05 Score=75.77 Aligned_cols=53 Identities=28% Similarity=0.429 Sum_probs=43.1
Q ss_pred HHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710 208 RVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA 260 (473)
Q Consensus 208 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s 260 (473)
..+...+...|.+|+++++|++|..+++++.|.+.+|.+++||+||+|+....
T Consensus 213 ~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 265 (450)
T PF01593_consen 213 LALALAAEELGGEIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPSV 265 (450)
T ss_dssp HHHHHHHHHHGGGEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HHH
T ss_pred HHHHHHHhhcCceeecCCcceeccccccccccccccceEEecceeeecCchhh
Confidence 33444555567899999999999999999999999988999999999998763
No 325
>PRK10262 thioredoxin reductase; Provisional
Probab=97.80 E-value=0.00033 Score=67.07 Aligned_cols=33 Identities=27% Similarity=0.382 Sum_probs=30.3
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~ 92 (473)
.+|+|||+|.+|+.+|..|++. +.+|+++++.+
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~--~~~Vtlv~~~~ 179 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNI--ASEVHLIHRRD 179 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhh--CCEEEEEEECC
Confidence 3799999999999999999999 89999999873
No 326
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.80 E-value=2.8e-05 Score=76.84 Aligned_cols=36 Identities=28% Similarity=0.407 Sum_probs=33.3
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g 95 (473)
.+|+|||||++|+++|..|++. |++|+++|+.+.+|
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~--G~~Vtv~e~~~~~G 159 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRA--GHDVTVFERVALDG 159 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhC--CCeEEEeCCcCCCc
Confidence 6899999999999999999999 99999999986554
No 327
>PRK13984 putative oxidoreductase; Provisional
Probab=97.80 E-value=7e-05 Score=78.16 Aligned_cols=38 Identities=24% Similarity=0.288 Sum_probs=33.9
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g 95 (473)
...+|+|||+|++|+++|..|+++ |.+|+|+|+.+.+|
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~--G~~v~vie~~~~~g 319 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATM--GYEVTVYESLSKPG 319 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC--CCeEEEEecCCCCC
Confidence 456899999999999999999999 99999999986543
No 328
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.77 E-value=0.00027 Score=72.13 Aligned_cols=33 Identities=30% Similarity=0.427 Sum_probs=30.0
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~ 92 (473)
.+|+|||||.+|+.+|..|++. +.+|+++++.+
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~--g~~Vtli~~~~ 385 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGI--VRHVTVLEFAD 385 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhc--CcEEEEEEeCC
Confidence 3799999999999999999988 89999999763
No 329
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.74 E-value=7.6e-05 Score=77.15 Aligned_cols=38 Identities=29% Similarity=0.447 Sum_probs=33.7
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g 95 (473)
...+|+|||+|++|+++|+.|++. |.+|+|+|+.+.+|
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~--G~~V~v~e~~~~~G 173 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRM--GHAVTIFEAGPKLG 173 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEecCCCCC
Confidence 346899999999999999999999 89999999986554
No 330
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.71 E-value=0.00022 Score=69.15 Aligned_cols=32 Identities=34% Similarity=0.429 Sum_probs=28.9
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCe-EEEEecc
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMK-ICLVEKE 91 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~-V~viE~~ 91 (473)
..|+|||+|..|+.+|..|++. |.+ |+|+++.
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~--g~~~Vtvi~~~ 205 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLL--GAEKVYLAYRR 205 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCCeEEEEeec
Confidence 4799999999999999999988 776 9999975
No 331
>KOG4716|consensus
Probab=97.70 E-value=0.00097 Score=61.23 Aligned_cols=35 Identities=31% Similarity=0.439 Sum_probs=32.3
Q ss_pred CCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710 55 PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE 91 (473)
Q Consensus 55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~ 91 (473)
..+||.+|||||-+||+||.+.+.. |.+|.++|--
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~--G~kV~~lDfV 51 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADL--GAKVACLDFV 51 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhc--CCcEEEEeec
Confidence 3679999999999999999999999 9999999964
No 332
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=97.68 E-value=0.00098 Score=68.79 Aligned_cols=59 Identities=3% Similarity=-0.027 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEE-EE---cCCC--cEEEcCEEEEcCCcChH
Q psy7710 203 WGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVT-IS---TKQG--DHLESSYALVCAGLQAD 261 (473)
Q Consensus 203 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~-v~---~~~g--~~i~ad~VV~aaG~~s~ 261 (473)
...++..|.+.+++.|++|+.++.+++|..+++.+. +. ..+| ..+.|+.||+|||+++.
T Consensus 118 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~~ 182 (565)
T TIGR01816 118 GHAILHTLYQQNLKADTSFFNEYFALDLLMEDGECRGVIAYCLETGEIHRFRAKAVVLATGGYGR 182 (565)
T ss_pred hHHHHHHHHHHHHhCCCEEEeccEEEEEEeeCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCccc
Confidence 356888999999999999999999999997665543 32 3345 35789999999999864
No 333
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.68 E-value=4.8e-05 Score=73.73 Aligned_cols=35 Identities=26% Similarity=0.315 Sum_probs=32.2
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcc
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKEL 94 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~ 94 (473)
.||+|||||++|+.+|+.|+++ |++|+|+|+.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~--Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKR--GVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhC--CCcEEEEEccCcc
Confidence 5899999999999999999999 9999999987543
No 334
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.63 E-value=0.0042 Score=67.25 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=25.3
Q ss_pred CCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEec
Q psy7710 8 TLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEK 42 (473)
Q Consensus 8 ~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~ 42 (473)
+.++.+|||+|.||.++|..++.. +..+.+++.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~--G~~VTV~Ek 568 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARA--GHPVTVFEK 568 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHC--CCeEEEEec
Confidence 347899999999999999999854 345555543
No 335
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.56 E-value=0.00097 Score=66.87 Aligned_cols=32 Identities=28% Similarity=0.358 Sum_probs=30.0
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE 91 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~ 91 (473)
.+|+|||+|..|+-+|..|++. |.+|+++++.
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~--G~~Vtlv~~~ 304 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRL--GAEVHCLYRR 304 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCEEEEEeec
Confidence 4799999999999999999999 8999999986
No 336
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.51 E-value=0.0016 Score=62.54 Aligned_cols=37 Identities=27% Similarity=0.324 Sum_probs=29.7
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~ 92 (473)
....|+|||||.++..++..|.+.++..+|+++-|++
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~ 225 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSP 225 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSS
T ss_pred CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCC
Confidence 5678999999999999999999985556999999874
No 337
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.0096 Score=55.97 Aligned_cols=60 Identities=18% Similarity=0.205 Sum_probs=42.3
Q ss_pred HHHHHHHc-CcEEEeCceEEEEEEcC-CeEEEEcCCC--cEEEcCEEEEcCCcC-hHHHHHhcCC
Q psy7710 210 MGEEFCEL-GGEIRLNQQVESFKENP-ESVTISTKQG--DHLESSYALVCAGLQ-ADEMALKSGC 269 (473)
Q Consensus 210 l~~~~~~~-Gv~i~~~~~V~~i~~~~-~~v~v~~~~g--~~i~ad~VV~aaG~~-s~~l~~~~g~ 269 (473)
+.+.++++ ++++++++.+.+|.-++ ..+.++...+ ..+.+|.|+++.|.- ...+.+..++
T Consensus 184 ~~~~l~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~~~~ 248 (305)
T COG0492 184 LVERLKKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGV 248 (305)
T ss_pred HHHHHHhcCCeEEEeCCceeEEecCccceEEEEecCCceEEEEeceEEEecCCCCchHHHhhccc
Confidence 44455544 79999999999998776 3445544323 367899999999987 4467766554
No 338
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.40 E-value=0.0014 Score=66.01 Aligned_cols=32 Identities=31% Similarity=0.434 Sum_probs=29.0
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKM-KICLVEKE 91 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~ 91 (473)
-+|+|||+|.+|+-+|..|++. |. +|+++++.
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~--G~~~Vtlv~~~ 306 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRL--GAESVTIVYRR 306 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCCeEEEeeec
Confidence 4799999999999999999988 77 89999986
No 339
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=97.38 E-value=0.0011 Score=65.01 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=33.8
Q ss_pred CCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCC
Q psy7710 55 PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGH 101 (473)
Q Consensus 55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~ 101 (473)
+.++||+|+|.|+.-+.+|..|++. |.+|+.+|+++..|+...+.
T Consensus 2 ~~~yDviI~GTGl~esila~als~~--GkkVLhiD~n~yYGg~~asl 46 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSRS--GKKVLHIDRNDYYGGEWASL 46 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHHT--T--EEEE-SSSSSCGGG-EE
T ss_pred CccceEEEECCCcHHHHHHHHHHhc--CCEEEecCCCCCcCCchhcc
Confidence 4689999999999999999999999 99999999998777665443
No 340
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.37 E-value=0.0018 Score=71.24 Aligned_cols=61 Identities=21% Similarity=0.235 Sum_probs=45.3
Q ss_pred HHHHHHHcCcEEEeCceEEEEEEcCCe--EEEE--cCCCcEEEcCEEEEcCCcC-hHHHHHhcCCC
Q psy7710 210 MGEEFCELGGEIRLNQQVESFKENPES--VTIS--TKQGDHLESSYALVCAGLQ-ADEMALKSGCS 270 (473)
Q Consensus 210 l~~~~~~~Gv~i~~~~~V~~i~~~~~~--v~v~--~~~g~~i~ad~VV~aaG~~-s~~l~~~~g~~ 270 (473)
+.+.+++.|+++++++.|+++..++.. +.+. ..++.++.||.|+++.|.. ..+|+..+|..
T Consensus 357 l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~ 422 (985)
T TIGR01372 357 ARAEARELGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGK 422 (985)
T ss_pred HHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCC
Confidence 334567789999999999999765532 3343 2244679999999999988 56788887754
No 341
>KOG0405|consensus
Probab=97.35 E-value=0.0033 Score=58.13 Aligned_cols=54 Identities=15% Similarity=0.190 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHcCcEEEeCceEEEEEEcCCe-EEEEcCCCcEEEcCEEEEcCCcC
Q psy7710 206 VTRVMGEEFCELGGEIRLNQQVESFKENPES-VTISTKQGDHLESSYALVCAGLQ 259 (473)
Q Consensus 206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~-v~v~~~~g~~i~ad~VV~aaG~~ 259 (473)
+...+.+.++..|++++.++.++++.+.+.+ ..+.+..|....+|.++.|+|--
T Consensus 232 i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~ 286 (478)
T KOG0405|consen 232 ISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRK 286 (478)
T ss_pred HHHHHHHHhhhcceeecccccceeeeecCCCceEEEEeccccccccEEEEEecCC
Confidence 3344667788899999999999999987655 55666666334489999999976
No 342
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.32 E-value=0.00034 Score=69.07 Aligned_cols=38 Identities=18% Similarity=0.280 Sum_probs=32.8
Q ss_pred CcccEEEEcCChHHHHHHHHHH-hcCCCCeEEEEeccCccc
Q psy7710 56 ALYDVVVVGGGIVGVATARELK-LNYPKMKICLVEKEKELG 95 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~-~~~~G~~V~viE~~~~~g 95 (473)
....|+|||||++|+.+|.+|+ +. |.+|+|+|+.+.++
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~--g~~VtlfEk~p~pg 76 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHE--RVKVDIFEKLPNPY 76 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhc--CCeEEEEecCCCCc
Confidence 3467999999999999999875 55 89999999997765
No 343
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.29 E-value=0.0021 Score=65.83 Aligned_cols=33 Identities=30% Similarity=0.372 Sum_probs=30.2
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~ 92 (473)
.+|+|||||.+|+.+|..|+.. +.+|+|+++.+
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~--~~~Vtlv~~~~ 384 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGI--VKHVTVLEFAP 384 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhc--CCEEEEEEECc
Confidence 3799999999999999999998 89999999874
No 344
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.24 E-value=0.0004 Score=73.82 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=32.2
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~ 92 (473)
...+|+|||||++|+++|++|++. |++|+|+|+.+
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~--Gh~Vtv~E~~~ 416 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRS--GHNVTAIDGLK 416 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhC--CCeEEEEcccc
Confidence 456899999999999999999999 99999999864
No 345
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.23 E-value=0.0029 Score=63.97 Aligned_cols=60 Identities=22% Similarity=0.269 Sum_probs=41.4
Q ss_pred HHHHHHcCcEEEeCceEEEEEEcCCeEE-EE-----cCC-------C--cEEEcCEEEEcCCcCh--HHHHHhcCCC
Q psy7710 211 GEEFCELGGEIRLNQQVESFKENPESVT-IS-----TKQ-------G--DHLESSYALVCAGLQA--DEMALKSGCS 270 (473)
Q Consensus 211 ~~~~~~~Gv~i~~~~~V~~i~~~~~~v~-v~-----~~~-------g--~~i~ad~VV~aaG~~s--~~l~~~~g~~ 270 (473)
.+.+++.|+++++++.+++|..+++.+. |+ ..+ | .++.+|.||+|+|... ..+++.+|+.
T Consensus 336 ~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~ 412 (471)
T PRK12810 336 VSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVE 412 (471)
T ss_pred HHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCcc
Confidence 3445678999999999999975555443 32 112 1 4799999999999764 3466666654
No 346
>KOG3855|consensus
Probab=97.19 E-value=0.044 Score=52.24 Aligned_cols=56 Identities=9% Similarity=0.010 Sum_probs=41.6
Q ss_pred HHcCcEEEeCceEEEEEEc-------CC-eEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCC
Q psy7710 215 CELGGEIRLNQQVESFKEN-------PE-SVTISTKQGDHLESSYALVCAGLQADEMALKSGCSL 271 (473)
Q Consensus 215 ~~~Gv~i~~~~~V~~i~~~-------~~-~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~ 271 (473)
+...++|+..++|..+... ++ .+.+++.+|..+.+|.+|-|.|..+ ...+.++++.
T Consensus 164 ~~~nv~vi~~~k~~~~~~~~~l~~~~n~~~~~i~l~dg~~~~~~LLigAdg~Ns-~vR~~snid~ 227 (481)
T KOG3855|consen 164 ESDNVTVINMAKVIDCTIPEYLIKNDNGMWFHITLTDGINFATDLLIGADGFNS-VVRKASNIDV 227 (481)
T ss_pred hcCceeeecccceeeeccccccCCCCCcceEEEEeccCceeeeceeeccccccc-hhhhhcCCCc
Confidence 3468999999998887652 22 3458888888899999999998876 5666666664
No 347
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.18 E-value=0.0069 Score=55.68 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=30.6
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~ 92 (473)
..|.|||||++|..+||+++++ |.+|.+.|-.+
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~--Gv~V~L~EMRp 36 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKR--GVPVILYEMRP 36 (439)
T ss_pred CceEEEcccccccHHHHHHHHc--CCcEEEEEccc
Confidence 4599999999999999999999 99999999874
No 348
>KOG1800|consensus
Probab=97.15 E-value=0.0006 Score=63.65 Aligned_cols=39 Identities=28% Similarity=0.317 Sum_probs=34.5
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcc
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKEL 94 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~ 94 (473)
....|+|||+|++|+.+|++|.++.++.+|.|+|+.+.+
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP 57 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP 57 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc
Confidence 445899999999999999999997668999999999654
No 349
>PRK12831 putative oxidoreductase; Provisional
Probab=97.15 E-value=0.0045 Score=62.28 Aligned_cols=32 Identities=31% Similarity=0.395 Sum_probs=29.8
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE 91 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~ 91 (473)
.+|+|||+|.+|+-+|..|++. |.+|+++.+.
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~--Ga~Vtlv~r~ 313 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRL--GAEVHIVYRR 313 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHc--CCEEEEEeec
Confidence 4799999999999999999999 8999999986
No 350
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.0013 Score=60.75 Aligned_cols=33 Identities=33% Similarity=0.350 Sum_probs=28.7
Q ss_pred cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710 57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE 91 (473)
Q Consensus 57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~ 91 (473)
-.||+|||||-+|..+|..|+-- -.-|+++|=.
T Consensus 354 gK~VAVIGGGNSGvEAAIDLAGi--v~hVtllEF~ 386 (520)
T COG3634 354 GKRVAVIGGGNSGVEAAIDLAGI--VEHVTLLEFA 386 (520)
T ss_pred CceEEEECCCcchHHHHHhHHhh--hheeeeeecc
Confidence 46999999999999999999966 4579999865
No 351
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.03 E-value=0.0013 Score=65.87 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=30.8
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE 91 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~ 91 (473)
...+|+|||+|.+|+-+|..|++. +.+|+++.+.
T Consensus 203 ~gk~VvVVG~G~Sg~diA~~L~~~--a~~V~l~~r~ 236 (461)
T PLN02172 203 KNEVVVVIGNFASGADISRDIAKV--AKEVHIASRA 236 (461)
T ss_pred CCCEEEEECCCcCHHHHHHHHHHh--CCeEEEEEee
Confidence 345799999999999999999998 8899999886
No 352
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.95 E-value=0.006 Score=57.93 Aligned_cols=38 Identities=18% Similarity=0.327 Sum_probs=33.2
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcc
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKEL 94 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~ 94 (473)
..+|++.||-|+.-|+.|..|.+.. +.++..+||.+.+
T Consensus 4 ~~~DliGIG~GPfNL~LA~ll~e~~-~~~~lFLerkp~F 41 (436)
T COG3486 4 EVLDLIGIGIGPFNLSLAALLEEHS-GLKSLFLERKPDF 41 (436)
T ss_pred cceeeEEEccCchHHHHHHHhcccc-CcceEEEecCCCC
Confidence 5689999999999999999999874 4889999998643
No 353
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.93 E-value=0.0064 Score=63.92 Aligned_cols=32 Identities=25% Similarity=0.387 Sum_probs=28.1
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKM-KICLVEKE 91 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~ 91 (473)
..|+|||+|.+|+-+|..|.+. |. +|+|+.+.
T Consensus 324 k~VvVIGgG~~a~e~A~~l~~~--Ga~~Vtlv~r~ 356 (652)
T PRK12814 324 KKVVVIGGGNTAIDAARTALRL--GAESVTILYRR 356 (652)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCCeEEEeeec
Confidence 3699999999999999999988 65 69999876
No 354
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.83 E-value=0.015 Score=62.89 Aligned_cols=33 Identities=33% Similarity=0.364 Sum_probs=27.6
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCC-CeEEEEecc
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPK-MKICLVEKE 91 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G-~~V~viE~~ 91 (473)
.+|+|||||.+|+-+|..+.+.+ | .+|+++.++
T Consensus 669 KrVVVIGGGnVAmD~Ar~a~Rlg-GakeVTLVyRr 702 (1019)
T PRK09853 669 KHVVVVGGGNTAMDAARAALRVP-GVEKVTVVYRR 702 (1019)
T ss_pred CEEEEECCChHHHHHHHHHHhcC-CCceEEEEEcc
Confidence 36999999999999998887763 3 489999986
No 355
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.75 E-value=0.015 Score=60.14 Aligned_cols=33 Identities=30% Similarity=0.462 Sum_probs=30.2
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~ 92 (473)
.+|+|||||.+|+.+|..|++. |.+|+++++.+
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~--g~~Vtli~~~~ 176 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRY--ASKVTVIVREP 176 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHcc--CCEEEEEEeCC
Confidence 3699999999999999999998 89999999873
No 356
>KOG3851|consensus
Probab=96.70 E-value=0.016 Score=53.12 Aligned_cols=37 Identities=27% Similarity=0.412 Sum_probs=32.8
Q ss_pred CCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710 55 PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE 91 (473)
Q Consensus 55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~ 91 (473)
..++.|+|||||-.|++.|..+.++.+.-+|.|+|..
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~ 73 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPA 73 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecch
Confidence 3689999999999999999999988666799999976
No 357
>KOG1238|consensus
Probab=96.63 E-value=0.0022 Score=64.56 Aligned_cols=40 Identities=35% Similarity=0.552 Sum_probs=34.9
Q ss_pred CCCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcc
Q psy7710 54 SPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKEL 94 (473)
Q Consensus 54 ~~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~ 94 (473)
....||.+|||||-+|+.+|..|++. |..+|+|+|++..+
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn-~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSEN-PNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccC-CCceEEEEecCCCC
Confidence 34689999999999999999999986 46899999998543
No 358
>KOG2495|consensus
Probab=96.48 E-value=0.013 Score=55.99 Aligned_cols=60 Identities=13% Similarity=0.220 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCC--cEEEcCEEEEcCCcChHHHHHhc
Q psy7710 206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQG--DHLESSYALVCAGLQADEMALKS 267 (473)
Q Consensus 206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g--~~i~ad~VV~aaG~~s~~l~~~~ 267 (473)
+.+...+.+.+.|+++.+++.|.++..+ .+.+.+.+| .+|..-.+|.++|..+..+.+.+
T Consensus 275 l~~yae~~f~~~~I~~~~~t~Vk~V~~~--~I~~~~~~g~~~~iPYG~lVWatG~~~rp~~k~l 336 (491)
T KOG2495|consen 275 LVEYAENQFVRDGIDLDTGTMVKKVTEK--TIHAKTKDGEIEEIPYGLLVWATGNGPRPVIKDL 336 (491)
T ss_pred HHHHHHHHhhhccceeecccEEEeecCc--EEEEEcCCCceeeecceEEEecCCCCCchhhhhH
Confidence 4444556677789999999999888643 456666666 45777889999999876666544
No 359
>KOG1336|consensus
Probab=96.44 E-value=0.016 Score=56.20 Aligned_cols=44 Identities=20% Similarity=0.253 Sum_probs=37.7
Q ss_pred HHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCc
Q psy7710 213 EFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGL 258 (473)
Q Consensus 213 ~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~ 258 (473)
..++.|+++++++.|++++...+. |.+.+|+.++.+++|+|||.
T Consensus 136 ~Yke~gIe~~~~t~v~~~D~~~K~--l~~~~Ge~~kys~LilATGs 179 (478)
T KOG1336|consen 136 FYKEKGIELILGTSVVKADLASKT--LVLGNGETLKYSKLIIATGS 179 (478)
T ss_pred hHhhcCceEEEcceeEEeeccccE--EEeCCCceeecceEEEeecC
Confidence 456789999999999999887654 56677889999999999998
No 360
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.37 E-value=0.026 Score=60.61 Aligned_cols=32 Identities=31% Similarity=0.432 Sum_probs=29.2
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCe-EEEEecc
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMK-ICLVEKE 91 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~-V~viE~~ 91 (473)
.+|+|||||.+|+-+|..+.+. |.+ |+++++.
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~--Ga~~Vtlv~r~ 603 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRL--GAERVTIVYRR 603 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHc--CCCeEEEeeec
Confidence 4799999999999999999998 776 9999986
No 361
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.35 E-value=0.027 Score=59.48 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=27.6
Q ss_pred cEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710 59 DVVVVGGGIVGVATARELKLNYPKM-KICLVEKE 91 (473)
Q Consensus 59 dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~ 91 (473)
+|+|||+|..|+-+|..+.+. |. +|+++.+.
T Consensus 470 ~VvVIGgG~~a~d~A~~a~r~--ga~~Vt~i~~~ 501 (654)
T PRK12769 470 NVVVLGGGDTAMDCVRTALRH--GASNVTCAYRR 501 (654)
T ss_pred eEEEECCcHHHHHHHHHHHHc--CCCeEEEeEec
Confidence 699999999999999998888 65 79998876
No 362
>PLN02852 ferredoxin-NADP+ reductase
Probab=96.17 E-value=0.29 Score=49.30 Aligned_cols=36 Identities=25% Similarity=0.292 Sum_probs=26.5
Q ss_pred CCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecc
Q psy7710 8 TLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKE 43 (473)
Q Consensus 8 ~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~ 43 (473)
...+++|||+|.+|..+|..+....++..+.++++.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~ 60 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERL 60 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 346899999999999999988753345566555433
No 363
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.14 E-value=0.055 Score=54.61 Aligned_cols=32 Identities=22% Similarity=0.241 Sum_probs=28.6
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKM-KICLVEKE 91 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~ 91 (473)
..|+|||+|..|+.+|..+.+. |. +|+|+++.
T Consensus 283 k~VvVIGgG~~a~d~A~~a~~~--Ga~~Vtvv~r~ 315 (467)
T TIGR01318 283 KRVVVLGGGDTAMDCVRTAIRL--GAASVTCAYRR 315 (467)
T ss_pred CEEEEECCcHHHHHHHHHHHHc--CCCeEEEEEec
Confidence 4699999999999999999988 74 79999986
No 364
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.11 E-value=0.05 Score=59.49 Aligned_cols=32 Identities=28% Similarity=0.410 Sum_probs=29.5
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE 91 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~ 91 (473)
.+|+|||||.+|+-+|..+.+. |.+|+++.+.
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~--Ga~Vtlv~rr 479 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRL--GGNVTIVYRR 479 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCEEEEEEec
Confidence 4699999999999999999999 8899999876
No 365
>KOG0399|consensus
Probab=96.00 E-value=0.0075 Score=63.90 Aligned_cols=37 Identities=24% Similarity=0.437 Sum_probs=34.1
Q ss_pred cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710 57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95 (473)
Q Consensus 57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g 95 (473)
-..|.|||+|++||++|-.|-+. |..|+|+||.+++|
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~--gh~v~vyer~dr~g 1821 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKA--GHTVTVYERSDRVG 1821 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhc--CcEEEEEEecCCcC
Confidence 36899999999999999999999 99999999997765
No 366
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=95.92 E-value=0.071 Score=53.28 Aligned_cols=33 Identities=27% Similarity=0.363 Sum_probs=30.8
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~ 92 (473)
.+|+|||+|.+|...|-+|++. |.+|+++-|.+
T Consensus 176 KrV~VIG~GaSA~di~~~l~~~--ga~vt~~qRs~ 208 (443)
T COG2072 176 KRVLVIGAGASAVDIAPELAEV--GASVTLSQRSP 208 (443)
T ss_pred CeEEEECCCccHHHHHHHHHhc--CCeeEEEecCC
Confidence 4799999999999999999999 89999999974
No 367
>KOG2665|consensus
Probab=95.72 E-value=0.01 Score=54.20 Aligned_cols=46 Identities=54% Similarity=0.833 Sum_probs=40.2
Q ss_pred CCCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecccccccccC
Q psy7710 6 SPTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFFSMSS 51 (473)
Q Consensus 6 ~~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 51 (473)
+..+||.+|||+|++|+|.|+.+..+.|+.++.+.+.+..++...+
T Consensus 45 s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqS 90 (453)
T KOG2665|consen 45 SKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQS 90 (453)
T ss_pred ccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeec
Confidence 4577999999999999999999999999999999998887765443
No 368
>KOG1439|consensus
Probab=95.44 E-value=0.17 Score=48.14 Aligned_cols=44 Identities=20% Similarity=0.395 Sum_probs=38.5
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCC
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGH 101 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~ 101 (473)
..+||+|+|-|..=+..+..|+.. |.+|+.+||++..|+.+.+.
T Consensus 3 eeyDvivlGTgl~ecilS~~Ls~~--gkkVLhiDrN~yYG~~sasl 46 (440)
T KOG1439|consen 3 EEYDVIVLGTGLTECILSGALSVD--GKKVLHIDRNDYYGGESASL 46 (440)
T ss_pred CceeEEEEcCCchhheeeeeeeec--CcEEEEEeCCCCCCccccce
Confidence 459999999999999999999999 99999999998877665553
No 369
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.38 E-value=0.022 Score=48.12 Aligned_cols=31 Identities=29% Similarity=0.388 Sum_probs=29.4
Q ss_pred cEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKE 91 (473)
Q Consensus 59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~ 91 (473)
+|.|||||..|.++|..|+++ |.+|+++.+.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~--g~~V~l~~~~ 31 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN--GHEVTLWGRD 31 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC--TEEEEEETSC
T ss_pred CEEEECcCHHHHHHHHHHHHc--CCEEEEEecc
Confidence 489999999999999999999 8999999987
No 370
>PRK13984 putative oxidoreductase; Provisional
Probab=95.38 E-value=0.11 Score=54.33 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=19.9
Q ss_pred ccEEEEcCChHHHHHHHHHHhc
Q psy7710 58 YDVVVVGGGIVGVATARELKLN 79 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~ 79 (473)
.+|+|||||.+|+-+|..|++.
T Consensus 419 k~VvVIGGG~~g~e~A~~l~r~ 440 (604)
T PRK13984 419 RSLVVIGGGNVAMDIARSMARL 440 (604)
T ss_pred CcEEEECCchHHHHHHHHHHhc
Confidence 4799999999999999999876
No 371
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=95.34 E-value=0.074 Score=53.11 Aligned_cols=47 Identities=15% Similarity=0.374 Sum_probs=37.7
Q ss_pred HHHcCcEEEeCceEEEEEEcCCeEEEEcCC-CcEEE--cCEEEEcCCcCh
Q psy7710 214 FCELGGEIRLNQQVESFKENPESVTISTKQ-GDHLE--SSYALVCAGLQA 260 (473)
Q Consensus 214 ~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~-g~~i~--ad~VV~aaG~~s 260 (473)
+.+.|++++.+++|+++..+++.+.+.... +..++ +|+||+|+|...
T Consensus 54 ~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p 103 (427)
T TIGR03385 54 IKKRGIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASP 103 (427)
T ss_pred HHhcCCeEEecCEEEEEECCCCEEEEEECCCCCEEecCCCEEEECCCCCC
Confidence 366799999999999998877777776543 34677 999999999854
No 372
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.23 E-value=0.028 Score=48.64 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=27.8
Q ss_pred cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92 (473)
Q Consensus 59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~ 92 (473)
.|.|||+|..|...|..++.. |.+|+++|.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA--GYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT--TSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhC--CCcEEEEECCh
Confidence 489999999999999999999 99999999873
No 373
>KOG2755|consensus
Probab=95.10 E-value=0.019 Score=51.14 Aligned_cols=33 Identities=39% Similarity=0.636 Sum_probs=30.1
Q ss_pred EEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710 60 VVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92 (473)
Q Consensus 60 VvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~ 92 (473)
.+|||||++|.+||-.|++..|..+|+++-..+
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass 34 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASS 34 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccH
Confidence 689999999999999999998889999998763
No 374
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=95.04 E-value=0.15 Score=52.49 Aligned_cols=47 Identities=13% Similarity=0.215 Sum_probs=39.8
Q ss_pred HHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710 212 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA 260 (473)
Q Consensus 212 ~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s 260 (473)
...+++|++++.+.+|+.|..++. .|.++.|.++..|.+|+|||.+.
T Consensus 67 dwy~~~~i~L~~~~~v~~idr~~k--~V~t~~g~~~~YDkLilATGS~p 113 (793)
T COG1251 67 DWYEENGITLYTGEKVIQIDRANK--VVTTDAGRTVSYDKLIIATGSYP 113 (793)
T ss_pred hhHHHcCcEEEcCCeeEEeccCcc--eEEccCCcEeecceeEEecCccc
Confidence 345778999999999999987664 46778888999999999999885
No 375
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.98 E-value=0.036 Score=46.40 Aligned_cols=30 Identities=23% Similarity=0.498 Sum_probs=28.6
Q ss_pred EEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710 60 VVVVGGGIVGVATARELKLNYPKMKICLVEKE 91 (473)
Q Consensus 60 VvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~ 91 (473)
|+|+|+|..|+..|+.|++. |.+|.++.+.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~--g~~V~l~~r~ 30 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA--GHDVTLVSRS 30 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT--TCEEEEEESH
T ss_pred CEEECcCHHHHHHHHHHHHC--CCceEEEEcc
Confidence 68999999999999999998 9999999987
No 376
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=94.95 E-value=0.13 Score=51.01 Aligned_cols=43 Identities=21% Similarity=0.377 Sum_probs=34.9
Q ss_pred HHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710 215 CELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA 260 (473)
Q Consensus 215 ~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s 260 (473)
.+.++.++.++.|+++......+ .+.+| .+..|++|+|+|+..
T Consensus 64 ~~~~i~~~~~~~v~~id~~~~~v--~~~~g-~~~yd~LvlatGa~~ 106 (415)
T COG0446 64 RATGIDVRTGTEVTSIDPENKVV--LLDDG-EIEYDYLVLATGARP 106 (415)
T ss_pred HhhCCEEeeCCEEEEecCCCCEE--EECCC-cccccEEEEcCCCcc
Confidence 45689999999999998776554 45556 888999999999985
No 377
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.93 E-value=0.11 Score=49.32 Aligned_cols=34 Identities=41% Similarity=0.523 Sum_probs=29.1
Q ss_pred cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92 (473)
Q Consensus 59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~ 92 (473)
+|.|||+|.+|.++|+.|+.++....|+++|+..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 5999999999999999999982115899999864
No 378
>KOG0029|consensus
Probab=94.92 E-value=0.47 Score=47.97 Aligned_cols=39 Identities=21% Similarity=0.416 Sum_probs=30.5
Q ss_pred CCCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccccc
Q psy7710 6 SPTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEF 46 (473)
Q Consensus 6 ~~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~~ 46 (473)
+.+..+.+|||||++|.++|+.|... +..+.+.+..+..
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~~--G~~V~VLEARdRv 50 (501)
T KOG0029|consen 12 AGKKKKVIVIGAGLAGLSAARQLQDF--GFDVLVLEARDRV 50 (501)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHc--CCceEEEeccCCc
Confidence 45678999999999999999999855 4556667665544
No 379
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=94.90 E-value=0.032 Score=48.39 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=26.4
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~ 92 (473)
+.|.|||.|..|+.+|..|+++ |.+|+.+|.+.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~--G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK--GHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT--TSEEEEE-S-H
T ss_pred CEEEEECCCcchHHHHHHHHhC--CCEEEEEeCCh
Confidence 3699999999999999999999 99999999873
No 380
>KOG1346|consensus
Probab=94.86 E-value=0.1 Score=49.75 Aligned_cols=61 Identities=15% Similarity=0.208 Sum_probs=47.3
Q ss_pred EecCCccceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710 193 IHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA 260 (473)
Q Consensus 193 ~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s 260 (473)
+|.|...+++|..+-. +..-|+-+..+.+|.+|..+++.| ..++|.+|..|..++|||...
T Consensus 251 ffepd~FfvspeDLp~-----~~nGGvAvl~G~kvvkid~~d~~V--~LnDG~~I~YdkcLIATG~~P 311 (659)
T KOG1346|consen 251 FFEPDGFFVSPEDLPK-----AVNGGVAVLRGRKVVKIDEEDKKV--ILNDGTTIGYDKCLIATGVRP 311 (659)
T ss_pred EecCCcceeChhHCcc-----cccCceEEEeccceEEeecccCeE--EecCCcEeehhheeeecCcCc
Confidence 4556666777776543 345689999999999999877654 457888999999999999874
No 381
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.81 E-value=0.22 Score=52.44 Aligned_cols=32 Identities=22% Similarity=0.222 Sum_probs=27.3
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCC-CeEEEEecc
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPK-MKICLVEKE 91 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G-~~V~viE~~ 91 (473)
.+|+|||+|..|+-+|..+.+. | .+|+++.+.
T Consensus 452 k~vvViGgG~~a~d~a~~~~~~--Ga~~Vt~v~rr 484 (639)
T PRK12809 452 KRVVVLGGGDTTMDCLRTSIRL--NAASVTCAYRR 484 (639)
T ss_pred CeEEEECCcHHHHHHHHHHHHc--CCCeEEEeeec
Confidence 4699999999999999888888 6 479999876
No 382
>PRK14727 putative mercuric reductase; Provisional
Probab=94.79 E-value=0.051 Score=55.13 Aligned_cols=32 Identities=13% Similarity=0.305 Sum_probs=29.9
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE 91 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~ 91 (473)
.+++|||+|.+|+.+|..|++. |.+|+++++.
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~--G~~Vtlv~~~ 220 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARL--GSRVTILARS 220 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCEEEEEEcC
Confidence 4799999999999999999999 8999999875
No 383
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=94.66 E-value=0.037 Score=52.23 Aligned_cols=36 Identities=28% Similarity=0.493 Sum_probs=29.2
Q ss_pred CcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccccc
Q psy7710 10 YDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEF 46 (473)
Q Consensus 10 ~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~~ 46 (473)
||++|||+|++|+++|.+|+ ..++.++.++|+.+..
T Consensus 1 yD~iIVGsG~~G~v~A~rLs-~~~~~~VlvlEaG~~~ 36 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLS-EAGNKKVLVLEAGPRY 36 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHT-TSTTS-EEEEESSBSC
T ss_pred CCEEEECcCHHHHHHHHHHh-hCCCCcEEEEEccccC
Confidence 89999999999999999999 4567789898877653
No 384
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=94.63 E-value=0.044 Score=54.51 Aligned_cols=35 Identities=29% Similarity=0.514 Sum_probs=32.3
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcc
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKEL 94 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~ 94 (473)
..++|||||++|+-.|..+++. |.+|+|+|+.+.+
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~L--G~~VTiie~~~~i 208 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAAL--GSKVTVVERGDRI 208 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCC
Confidence 4699999999999999999999 9999999998754
No 385
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=94.54 E-value=0.059 Score=52.83 Aligned_cols=46 Identities=46% Similarity=0.612 Sum_probs=40.2
Q ss_pred CCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecccccccccCC
Q psy7710 7 PTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFFSMSSS 52 (473)
Q Consensus 7 ~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~ 52 (473)
+++||++|||||+.|++.|..|+...|..++.+++++......++.
T Consensus 1 ~~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~ 46 (429)
T COG0579 1 MMDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSS 46 (429)
T ss_pred CCceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCcccccccc
Confidence 3689999999999999999999988888999999998877655544
No 386
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=94.53 E-value=0.2 Score=47.26 Aligned_cols=57 Identities=16% Similarity=0.213 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHcCcEEEeCceEEEEEEcC--C-eEE--E-EcCCCcEEE--c-CEEEEcCCcC
Q psy7710 203 WGLVTRVMGEEFCELGGEIRLNQQVESFKENP--E-SVT--I-STKQGDHLE--S-SYALVCAGLQ 259 (473)
Q Consensus 203 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~--~-~v~--v-~~~~g~~i~--a-d~VV~aaG~~ 259 (473)
...++.-|..+++++||.+..+++|++|..+. + .+. + ...+++.++ - |.|+++.|.-
T Consensus 226 YeSlvlPli~yL~~H~Vdf~~~~~Vedi~v~~t~gkkvA~aih~~~d~~~ieLt~dDlVfvTNgsi 291 (587)
T COG4716 226 YESLVLPLITYLKSHGVDFTYDQKVEDIDVDDTPGKKVAKAIHVLGDAETIELTPDDLVFVTNGSI 291 (587)
T ss_pred HHHHHHHHHHHHHHcCCceEeccEEeeeeeccCcchhHHHHHHHhcCcceeecCCCceEEEeccee
Confidence 46678889999999999999999999998764 2 111 2 244444443 2 5788877754
No 387
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=94.50 E-value=0.084 Score=52.45 Aligned_cols=53 Identities=19% Similarity=0.286 Sum_probs=42.3
Q ss_pred HHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEc-CCCcEEEcCEEEEcCCcC
Q psy7710 207 TRVMGEEFCELGGEIRLNQQVESFKENPESVTIST-KQGDHLESSYALVCAGLQ 259 (473)
Q Consensus 207 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~-~~g~~i~ad~VV~aaG~~ 259 (473)
.+.|.+.+++.|++|+++++|++|..+++++.+.. .+|+.+.||.||+|+...
T Consensus 200 ~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~ 253 (419)
T TIGR03467 200 PEPARRWLDSRGGEVRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPPR 253 (419)
T ss_pred HHHHHHHHHHcCCEEEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCHH
Confidence 34577788888999999999999998887755332 355588999999998766
No 388
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=94.43 E-value=0.34 Score=53.63 Aligned_cols=32 Identities=25% Similarity=0.250 Sum_probs=27.1
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKM-KICLVEKE 91 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~ 91 (473)
.+|+|||||.+|+-+|..+.+. |. +|+++.+.
T Consensus 572 k~VvVIGgG~tA~D~A~~a~rl--Ga~~Vtiv~rr 604 (1006)
T PRK12775 572 KSVVVIGAGNTAMDCLRVAKRL--GAPTVRCVYRR 604 (1006)
T ss_pred CEEEEECCcHHHHHHHHHHHHc--CCCEEEEEeec
Confidence 4799999999999999999988 66 47777764
No 389
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=94.13 E-value=0.071 Score=53.46 Aligned_cols=35 Identities=17% Similarity=0.328 Sum_probs=31.6
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcc
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKEL 94 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~ 94 (473)
.+|+|||+|.+|+.+|..|++. |.+|+++|+.+.+
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~--g~~Vtli~~~~~~ 192 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKL--GSKVTVLDAASTI 192 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCcc
Confidence 4699999999999999999998 8999999997544
No 390
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=94.06 E-value=0.15 Score=52.10 Aligned_cols=34 Identities=35% Similarity=0.396 Sum_probs=29.5
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE 91 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~ 91 (473)
+..+|+|||+|.+|.-+|.+|++. ..+|.+.-|.
T Consensus 182 ~gKrVlVVG~g~Sg~DIa~el~~~--a~~v~~s~R~ 215 (531)
T PF00743_consen 182 KGKRVLVVGGGNSGADIAVELSRV--AKKVYLSTRR 215 (531)
T ss_dssp TTSEEEEESSSHHHHHHHHHHTTT--SCCEEEECC-
T ss_pred CCCEEEEEeCCHhHHHHHHHHHHh--cCCeEEEEec
Confidence 346899999999999999999998 7899988876
No 391
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=94.02 E-value=0.09 Score=53.07 Aligned_cols=47 Identities=28% Similarity=0.241 Sum_probs=39.3
Q ss_pred CCCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecccccccccCC
Q psy7710 6 SPTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFFSMSSS 52 (473)
Q Consensus 6 ~~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~ 52 (473)
.+..+|++|||||++|+++|..|+...|+.++.++|+.......++.
T Consensus 3 ~~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~sS~ 49 (497)
T PRK13339 3 KSESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESSN 49 (497)
T ss_pred CCccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchhcCC
Confidence 35678999999999999999999988899999999994455555543
No 392
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.01 E-value=0.073 Score=47.83 Aligned_cols=32 Identities=28% Similarity=0.668 Sum_probs=30.4
Q ss_pred cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92 (473)
Q Consensus 59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~ 92 (473)
+++|||+|-.|.+.|..|.+. |.+|+++|+.+
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~--g~~Vv~Id~d~ 33 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEE--GHNVVLIDRDE 33 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhC--CCceEEEEcCH
Confidence 689999999999999999999 99999999984
No 393
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.96 E-value=0.069 Score=50.70 Aligned_cols=32 Identities=22% Similarity=0.376 Sum_probs=30.0
Q ss_pred cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92 (473)
Q Consensus 59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~ 92 (473)
+|.|||+|..|.+.|..|+++ |.+|+++|+.+
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~--G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARA--GHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHC--CCeeEEEeCCH
Confidence 699999999999999999999 89999999873
No 394
>KOG4405|consensus
Probab=93.95 E-value=0.06 Score=51.14 Aligned_cols=49 Identities=18% Similarity=0.259 Sum_probs=41.7
Q ss_pred CCCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcc
Q psy7710 54 SPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSG 104 (473)
Q Consensus 54 ~~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g 104 (473)
.+..+||||||.|+.-...|...++. |.+|+-+|++...|+.-++.+..
T Consensus 5 lP~~fDvVViGTGlpESilAAAcSrs--G~sVLHlDsn~yYGg~waSfSms 53 (547)
T KOG4405|consen 5 LPEEFDVVVIGTGLPESILAAACSRS--GSSVLHLDSNEYYGGNWASFSMS 53 (547)
T ss_pred CchhccEEEEcCCCcHHHHHHHhhhc--CCceEeccCccccCCcccceeec
Confidence 35789999999999999999999999 99999999998888765554433
No 395
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=93.72 E-value=0.081 Score=53.44 Aligned_cols=35 Identities=23% Similarity=0.477 Sum_probs=31.7
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcc
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKEL 94 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~ 94 (473)
.+|+|||+|.+|+.+|..|++. |.+|+++|+.+.+
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~--g~~Vtli~~~~~~ 205 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASL--GSKVTVIEMLDRI 205 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCcEEEEEcCCCC
Confidence 4799999999999999999999 8999999998543
No 396
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=93.70 E-value=0.083 Score=53.38 Aligned_cols=35 Identities=23% Similarity=0.503 Sum_probs=31.9
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcc
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKEL 94 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~ 94 (473)
.+++|||+|.+|+.+|..|++. |.+|+++++.+.+
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~--g~~Vtli~~~~~~ 201 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARL--GSEVTILQRSDRL 201 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCcEEEEEcCCcC
Confidence 5799999999999999999999 8999999998543
No 397
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=93.69 E-value=0.6 Score=48.49 Aligned_cols=52 Identities=13% Similarity=0.179 Sum_probs=33.8
Q ss_pred HHHcCcEEEeCceEEEEEEcCC-eEE-----EEc----C-------CC--cEEEcCEEEEcCCcCh-HHHHH
Q psy7710 214 FCELGGEIRLNQQVESFKENPE-SVT-----IST----K-------QG--DHLESSYALVCAGLQA-DEMAL 265 (473)
Q Consensus 214 ~~~~Gv~i~~~~~V~~i~~~~~-~v~-----v~~----~-------~g--~~i~ad~VV~aaG~~s-~~l~~ 265 (473)
+.+.|+++++++.+.+|..+++ .+. +.. . .| .++++|.||+|+|... ..++.
T Consensus 315 a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~ 386 (564)
T PRK12771 315 ALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLE 386 (564)
T ss_pred HHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhhh
Confidence 4457899998888888875543 221 211 1 12 3789999999999764 34544
No 398
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=93.57 E-value=0.097 Score=49.55 Aligned_cols=32 Identities=19% Similarity=0.294 Sum_probs=30.1
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE 91 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~ 91 (473)
++|+|||+|..|...|..|++. |.+|+++.|.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~--G~~V~lv~r~ 34 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA--GLPVRLILRD 34 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC--CCCeEEEEec
Confidence 4699999999999999999999 8999999996
No 399
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.57 E-value=0.088 Score=53.47 Aligned_cols=32 Identities=31% Similarity=0.417 Sum_probs=29.8
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE 91 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~ 91 (473)
..|+|||+|.+|+++|..|+++ |.+|+++|+.
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~--G~~V~~~d~~ 48 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLEL--GARVTVVDDG 48 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCC
Confidence 4699999999999999999999 9999999976
No 400
>KOG2495|consensus
Probab=93.49 E-value=0.65 Score=44.83 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=31.2
Q ss_pred CCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710 55 PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92 (473)
Q Consensus 55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~ 92 (473)
.+...|||+|+|-+|.+....|-.. -.+|+||...+
T Consensus 53 ~kKk~vVVLGsGW~a~S~lk~ldts--~YdV~vVSPRn 88 (491)
T KOG2495|consen 53 GKKKRVVVLGSGWGAISLLKKLDTS--LYDVTVVSPRN 88 (491)
T ss_pred CCCceEEEEcCchHHHHHHHhcccc--ccceEEecccc
Confidence 3567899999999999999988877 78999998764
No 401
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=93.47 E-value=0.12 Score=49.14 Aligned_cols=34 Identities=12% Similarity=0.208 Sum_probs=31.1
Q ss_pred cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710 57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92 (473)
Q Consensus 57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~ 92 (473)
..+|+|||+|..|...|..|++. |.+|+++.|++
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~--g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARA--GFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHC--CCeEEEEEeCC
Confidence 35799999999999999999999 89999999873
No 402
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=93.39 E-value=0.1 Score=52.66 Aligned_cols=35 Identities=29% Similarity=0.458 Sum_probs=31.7
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcc
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKEL 94 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~ 94 (473)
.+++|||+|.+|+.+|..|++. |.+|+++++.+.+
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~--g~~Vtli~~~~~~ 207 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASL--GAEVTIVEALPRI 207 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCeEEEEEcCCCc
Confidence 4799999999999999999999 8999999997543
No 403
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.34 E-value=2.2 Score=41.17 Aligned_cols=43 Identities=9% Similarity=0.165 Sum_probs=34.1
Q ss_pred cCcEEEeCceEEEEEEcCCe-EEEEc-----CCCcEEEcCEEEEcCCcC
Q psy7710 217 LGGEIRLNQQVESFKENPES-VTIST-----KQGDHLESSYALVCAGLQ 259 (473)
Q Consensus 217 ~Gv~i~~~~~V~~i~~~~~~-v~v~~-----~~g~~i~ad~VV~aaG~~ 259 (473)
..+.++.+++|.+++..+++ +.+.+ ++..++++|.||+|||..
T Consensus 291 ~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~ 339 (436)
T COG3486 291 PDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYR 339 (436)
T ss_pred CCeeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccc
Confidence 46899999999999988765 65443 233578999999999987
No 404
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=93.23 E-value=0.11 Score=40.21 Aligned_cols=34 Identities=35% Similarity=0.400 Sum_probs=30.4
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE 91 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~ 91 (473)
+...|+|||+|-.|..-+..|.+. |.+|+|+.+.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~--gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEA--GAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCC--TBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEECCc
Confidence 346799999999999999999999 9999999986
No 405
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.16 E-value=0.11 Score=52.53 Aligned_cols=32 Identities=28% Similarity=0.415 Sum_probs=29.9
Q ss_pred cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92 (473)
Q Consensus 59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~ 92 (473)
.|+|||.|.+|+++|..|+++ |.+|+++|+..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~--G~~V~~~D~~~ 33 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQ--GWEVVVSDRND 33 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHC--CCEEEEECCCC
Confidence 489999999999999999999 99999999874
No 406
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.15 E-value=0.15 Score=47.72 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=30.6
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~ 92 (473)
..|.|||+|..|...|..++.. |.+|+++|+.+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~ 38 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA--GVDVLVFETTE 38 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC--CCEEEEEECCH
Confidence 3699999999999999999999 99999999874
No 407
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=93.12 E-value=0.12 Score=45.52 Aligned_cols=35 Identities=34% Similarity=0.354 Sum_probs=29.3
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~ 92 (473)
...+|+|||+|.++.-+|+.|++. |.+|+++-|.+
T Consensus 166 ~~k~V~VVG~G~SA~d~a~~l~~~--g~~V~~~~R~~ 200 (203)
T PF13738_consen 166 KGKRVVVVGGGNSAVDIAYALAKA--GKSVTLVTRSP 200 (203)
T ss_dssp TTSEEEEE--SHHHHHHHHHHTTT--CSEEEEEESS-
T ss_pred CCCcEEEEcChHHHHHHHHHHHhh--CCEEEEEecCC
Confidence 346899999999999999999999 89999998874
No 408
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=93.12 E-value=0.22 Score=45.83 Aligned_cols=34 Identities=26% Similarity=0.385 Sum_probs=31.1
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE 91 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~ 91 (473)
...+|+|||+|++|..+|.-+... |.+|+++|.+
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~gl--gA~Vtild~n 200 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGL--GADVTILDLN 200 (371)
T ss_pred CCccEEEECCccccchHHHHHhcc--CCeeEEEecC
Confidence 456899999999999999999988 9999999987
No 409
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=93.10 E-value=0.15 Score=44.88 Aligned_cols=34 Identities=26% Similarity=0.315 Sum_probs=30.8
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKM-KICLVEKE 91 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~ 91 (473)
....|+|||+|..|..+|..|++. |. +++++|.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~--Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARA--GIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHc--CCCEEEEECCC
Confidence 356799999999999999999999 77 79999987
No 410
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=93.07 E-value=0.12 Score=52.08 Aligned_cols=35 Identities=20% Similarity=0.447 Sum_probs=31.7
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcc
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKEL 94 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~ 94 (473)
.+++|||+|.+|+.+|..|++. |.+|+++++.+.+
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~--g~~Vtli~~~~~~ 210 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAAL--GVKVTLINTRDRL 210 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCc
Confidence 4699999999999999999999 9999999998544
No 411
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.04 E-value=0.13 Score=48.23 Aligned_cols=32 Identities=19% Similarity=0.406 Sum_probs=29.8
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE 91 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~ 91 (473)
..|.|||+|..|...|..|+++ |.+|+++|+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~--G~~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH--GFDVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCC
Confidence 3599999999999999999999 8999999986
No 412
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.97 E-value=0.14 Score=48.58 Aligned_cols=33 Identities=9% Similarity=0.237 Sum_probs=30.4
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~ 92 (473)
..|.|||+|..|...|..++.. |++|+++|..+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~a--G~~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAH--GLDVVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCH
Confidence 4599999999999999999999 99999999863
No 413
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=92.96 E-value=0.14 Score=51.84 Aligned_cols=41 Identities=24% Similarity=0.353 Sum_probs=34.7
Q ss_pred CcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccccccccc
Q psy7710 10 YDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFFSMS 50 (473)
Q Consensus 10 ~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 50 (473)
+|++|||||++|+++|..|+...|+.++.+++++......+
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a~~~ 41 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVAAES 41 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcchhhh
Confidence 69999999999999999999877899999999876544333
No 414
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=92.87 E-value=0.18 Score=49.78 Aligned_cols=37 Identities=46% Similarity=0.927 Sum_probs=32.5
Q ss_pred CCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecccc
Q psy7710 9 LYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKE 45 (473)
Q Consensus 9 ~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~ 45 (473)
++|.+|||+|++|+++|..|+...|+.++.++++...
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~ 38 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESG 38 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 5899999999999999999997777888988887653
No 415
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=92.84 E-value=0.2 Score=41.01 Aligned_cols=34 Identities=29% Similarity=0.301 Sum_probs=30.3
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCe-EEEEecc
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMK-ICLVEKE 91 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~-V~viE~~ 91 (473)
....++|||+|-+|-.+++.|++. |.+ |+|+.|.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~--g~~~i~i~nRt 45 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAAL--GAKEITIVNRT 45 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHT--TSSEEEEEESS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc--CCCEEEEEECC
Confidence 456799999999999999999999 665 9999986
No 416
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.81 E-value=0.14 Score=48.14 Aligned_cols=32 Identities=28% Similarity=0.522 Sum_probs=29.8
Q ss_pred cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92 (473)
Q Consensus 59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~ 92 (473)
.|.|||+|..|...|..|+++ |.+|+++|+++
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~--G~~V~~~d~~~ 34 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVS--GFQTTLVDIKQ 34 (288)
T ss_pred EEEEECccHHHHHHHHHHHhC--CCcEEEEeCCH
Confidence 499999999999999999999 89999999873
No 417
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=92.79 E-value=0.39 Score=48.43 Aligned_cols=73 Identities=15% Similarity=0.169 Sum_probs=48.5
Q ss_pred CCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecccccccccCCCCCCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEE
Q psy7710 9 LYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFFSMSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLV 88 (473)
Q Consensus 9 ~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~vi 88 (473)
.+|.+---+.++|..+....+...+........... .....+|+|+|+|.+|+.++..+... |.+|+++
T Consensus 126 ~~d~lssma~IAGy~Av~~aa~~~~~~~~g~~taaG---------~~pg~kVlViGaG~iGL~Ai~~Ak~l--GA~V~a~ 194 (509)
T PRK09424 126 SLDALSSMANIAGYRAVIEAAHEFGRFFTGQITAAG---------KVPPAKVLVIGAGVAGLAAIGAAGSL--GAIVRAF 194 (509)
T ss_pred CcccccchhhhhHHHHHHHHHHHhcccCCCceeccC---------CcCCCEEEEECCcHHHHHHHHHHHHC--CCEEEEE
Confidence 456676677888876655555443322111111111 01245799999999999999999888 8899999
Q ss_pred eccC
Q psy7710 89 EKEK 92 (473)
Q Consensus 89 E~~~ 92 (473)
|.++
T Consensus 195 D~~~ 198 (509)
T PRK09424 195 DTRP 198 (509)
T ss_pred eCCH
Confidence 9873
No 418
>PRK02106 choline dehydrogenase; Validated
Probab=92.79 E-value=0.16 Score=52.61 Aligned_cols=38 Identities=26% Similarity=0.459 Sum_probs=32.7
Q ss_pred CCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecccc
Q psy7710 7 PTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKE 45 (473)
Q Consensus 7 ~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~ 45 (473)
...||++|||+|++|+.+|.+|+. .++.++.++|+.+.
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae-~~g~~VlvlEaG~~ 40 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSE-DPDVSVLLLEAGGP 40 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHh-CCCCeEEEecCCCc
Confidence 345999999999999999999995 47889989988853
No 419
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=92.69 E-value=0.17 Score=44.66 Aligned_cols=32 Identities=34% Similarity=0.469 Sum_probs=29.8
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE 91 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~ 91 (473)
..|+|||||.+|...+..|.+. |.+|+|++..
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~--ga~VtVvsp~ 41 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKA--GAQLRVIAEE 41 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHC--CCEEEEEcCC
Confidence 4799999999999999999999 9999999875
No 420
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.68 E-value=0.19 Score=47.36 Aligned_cols=32 Identities=25% Similarity=0.308 Sum_probs=30.0
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE 91 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~ 91 (473)
..|.|||+|..|...|..|+++ |.+|+++|+.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~--G~~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA--GYDVLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCC
Confidence 4699999999999999999999 8999999986
No 421
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=92.56 E-value=0.18 Score=50.64 Aligned_cols=35 Identities=23% Similarity=0.485 Sum_probs=30.8
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~ 92 (473)
++|.|||.|..|+.+|..|+++++|.+|+.+|.+.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 46999999999999999999985568999999763
No 422
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=92.56 E-value=0.25 Score=40.71 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=29.8
Q ss_pred cEEEEcC-ChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710 59 DVVVVGG-GIVGVATARELKLNYPKMKICLVEKE 91 (473)
Q Consensus 59 dVvIIGa-Gi~Gl~~A~~L~~~~~G~~V~viE~~ 91 (473)
+|.|||+ |-.|.++|+.|...+...++.++|..
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~ 35 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDIN 35 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESS
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccC
Confidence 6999999 99999999999998555689999987
No 423
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=92.53 E-value=0.21 Score=42.63 Aligned_cols=34 Identities=26% Similarity=0.285 Sum_probs=29.2
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE 91 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~ 91 (473)
....|+|+|+|.+|..+|..|... |.+|+++|..
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~l--Ga~v~~~d~~ 52 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGL--GAEVVVPDER 52 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHT--T-EEEEEESS
T ss_pred CCeEEEEECCCHHHHHHHHHHhHC--CCEEEeccCC
Confidence 347899999999999999999999 9999999986
No 424
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=92.49 E-value=1.2 Score=39.30 Aligned_cols=33 Identities=36% Similarity=0.432 Sum_probs=30.3
Q ss_pred cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710 57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE 91 (473)
Q Consensus 57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~ 91 (473)
...|+|||||-.|+.=|..|.+. |.+|+|+-..
T Consensus 12 ~k~VlvvGgG~va~rKa~~ll~~--ga~v~Vvs~~ 44 (210)
T COG1648 12 GKKVLVVGGGSVALRKARLLLKA--GADVTVVSPE 44 (210)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc--CCEEEEEcCC
Confidence 45799999999999999999999 9999999876
No 425
>PLN02785 Protein HOTHEAD
Probab=92.43 E-value=0.19 Score=52.15 Aligned_cols=36 Identities=33% Similarity=0.558 Sum_probs=30.9
Q ss_pred CCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecccc
Q psy7710 7 PTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKE 45 (473)
Q Consensus 7 ~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~ 45 (473)
...|||+|||+|++|++.|.+|+. +.++.++|+...
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~---~~~VLllE~G~~ 88 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ---NFSVLLLERGGV 88 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc---CCcEEEEecCCC
Confidence 456999999999999999999995 478888888753
No 426
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=92.39 E-value=0.23 Score=41.74 Aligned_cols=33 Identities=30% Similarity=0.362 Sum_probs=29.5
Q ss_pred cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710 57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE 91 (473)
Q Consensus 57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~ 91 (473)
...|+|||||-.|..-|..|.+. |.+|+||...
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~--ga~V~VIsp~ 45 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDT--GAFVTVVSPE 45 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCc
Confidence 45799999999999999999999 9999999643
No 427
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=92.36 E-value=0.2 Score=50.80 Aligned_cols=41 Identities=24% Similarity=0.364 Sum_probs=35.3
Q ss_pred CCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecccccc
Q psy7710 7 PTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFF 47 (473)
Q Consensus 7 ~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~~~ 47 (473)
..++|++|||+|+.|++.|..|+...|+.++.+++++....
T Consensus 3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a 43 (494)
T PRK05257 3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVA 43 (494)
T ss_pred CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchh
Confidence 46789999999999999999999777888998999876543
No 428
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=92.30 E-value=0.19 Score=48.07 Aligned_cols=32 Identities=25% Similarity=0.392 Sum_probs=30.0
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE 91 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~ 91 (473)
++|.|||.|..||++|..|++. |.+|+.+|..
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~--GHeVv~vDid 32 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAEL--GHEVVCVDID 32 (414)
T ss_pred CceEEECCchHHHHHHHHHHHc--CCeEEEEeCC
Confidence 3689999999999999999999 9999999987
No 429
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=92.27 E-value=0.23 Score=43.74 Aligned_cols=33 Identities=33% Similarity=0.351 Sum_probs=30.0
Q ss_pred cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710 57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE 91 (473)
Q Consensus 57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~ 91 (473)
...|+|||||-.|...|..|.+. |.+|+|+++.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~--ga~V~VIs~~ 42 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKY--GAHIVVISPE 42 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCeEEEEcCC
Confidence 45799999999999999999999 8999999864
No 430
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=92.13 E-value=0.18 Score=47.71 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=28.9
Q ss_pred cEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKE 91 (473)
Q Consensus 59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~ 91 (473)
+|+|||+|..|...|..|++. |.+|+++++.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~--g~~V~~~~r~ 32 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA--GRDVTFLVRP 32 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC--CCceEEEecH
Confidence 599999999999999999999 8999999983
No 431
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=92.11 E-value=0.21 Score=47.21 Aligned_cols=32 Identities=28% Similarity=0.504 Sum_probs=28.7
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKM-KICLVEKE 91 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~ 91 (473)
.+|.|||+|..|..+|+.|+.+ |. +|+++|..
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~--g~~~VvlvDi~ 34 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK--ELADLVLLDVV 34 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc--CCCeEEEEeCC
Confidence 4699999999999999999998 54 89999985
No 432
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=91.99 E-value=0.21 Score=46.94 Aligned_cols=32 Identities=22% Similarity=0.411 Sum_probs=29.8
Q ss_pred cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92 (473)
Q Consensus 59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~ 92 (473)
.|.|||+|..|...|..|+++ |.+|+++|+.+
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~--G~~V~l~d~~~ 36 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFART--GYDVTIVDVSE 36 (291)
T ss_pred EEEEECccHHHHHHHHHHHhc--CCeEEEEeCCH
Confidence 599999999999999999999 89999999873
No 433
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=91.99 E-value=0.29 Score=46.15 Aligned_cols=41 Identities=22% Similarity=0.443 Sum_probs=36.5
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcc
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQ 98 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~ 98 (473)
..+||+|+|.|+.-+..+..|+-. |.+|+.||+++..|+..
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~--~k~VlhiD~Nd~YG~~~ 45 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWD--GKNVLHIDKNDYYGSTS 45 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhc--CceEEEEeCCCccCccc
Confidence 479999999999999999999999 89999999997766543
No 434
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=91.94 E-value=0.21 Score=48.14 Aligned_cols=32 Identities=19% Similarity=0.378 Sum_probs=29.9
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE 91 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~ 91 (473)
.+|.|||+|..|...|..|+++ |.+|+++++.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~--G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAA--GADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhc--CCcEEEEecH
Confidence 4699999999999999999999 8999999986
No 435
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=91.87 E-value=0.22 Score=47.13 Aligned_cols=31 Identities=19% Similarity=0.402 Sum_probs=29.1
Q ss_pred cEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKE 91 (473)
Q Consensus 59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~ 91 (473)
+|+|||+|..|...|..|++. |.+|+++++.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~--g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA--GHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC--CCeEEEEECC
Confidence 599999999999999999999 8999999985
No 436
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=91.80 E-value=0.23 Score=49.78 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=31.3
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcc
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKEL 94 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~ 94 (473)
.+|+|||+|.+|+.+|..|++. |.+|+++++.+.+
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~--g~~Vtli~~~~~~ 193 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANF--GSKVTILEAASLF 193 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHC--CCeEEEEecCCCC
Confidence 3699999999999999999999 9999999997543
No 437
>PRK06116 glutathione reductase; Validated
Probab=91.73 E-value=0.24 Score=49.90 Aligned_cols=34 Identities=26% Similarity=0.237 Sum_probs=31.0
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCc
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKE 93 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~ 93 (473)
.+|+|||+|.+|+.+|..|++. |.+|+++++++.
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~--g~~Vtlv~~~~~ 201 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGL--GSETHLFVRGDA 201 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCC
Confidence 4699999999999999999999 899999998753
No 438
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=91.71 E-value=0.31 Score=39.86 Aligned_cols=35 Identities=31% Similarity=0.497 Sum_probs=30.3
Q ss_pred cccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEeccCcc
Q psy7710 57 LYDVVVVGGGIVGVATARELKLNYPKM-KICLVEKEKEL 94 (473)
Q Consensus 57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~~~~ 94 (473)
+..|+|||+|-.|..+|..|++. |. +++|+|.+ .+
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~--Gv~~i~lvD~d-~v 37 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARS--GVGKITLVDDD-IV 37 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHH--TTSEEEEEESS-BB
T ss_pred CCEEEEECcCHHHHHHHHHHHHh--CCCceeecCCc-ce
Confidence 35799999999999999999999 65 89999987 44
No 439
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.54 E-value=0.24 Score=46.35 Aligned_cols=32 Identities=19% Similarity=0.389 Sum_probs=29.7
Q ss_pred cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92 (473)
Q Consensus 59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~ 92 (473)
+|.|||+|..|...|..|+++ |.+|+++|..+
T Consensus 5 kI~VIG~G~mG~~ia~~la~~--g~~V~~~d~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVA--GYDVVMVDISD 36 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHC--CCceEEEeCCH
Confidence 599999999999999999999 89999999863
No 440
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.54 E-value=0.26 Score=49.65 Aligned_cols=33 Identities=36% Similarity=0.477 Sum_probs=30.7
Q ss_pred cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710 57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE 91 (473)
Q Consensus 57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~ 91 (473)
...|+|||+|.+|+.+|..|+++ |.+|+++|+.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~--G~~V~~~d~~ 37 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKL--GAKVILTDEK 37 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCC
Confidence 35699999999999999999999 9999999986
No 441
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=91.50 E-value=0.27 Score=47.57 Aligned_cols=32 Identities=25% Similarity=0.498 Sum_probs=29.9
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCC-CeEEEEecc
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPK-MKICLVEKE 91 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G-~~V~viE~~ 91 (473)
.+|+|||+|-+|.++|..|+++ + .+|++.+|.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~--~d~~V~iAdRs 34 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN--GDGEVTIADRS 34 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC--CCceEEEEeCC
Confidence 4799999999999999999999 5 899999997
No 442
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=91.34 E-value=0.31 Score=46.77 Aligned_cols=34 Identities=26% Similarity=0.508 Sum_probs=30.9
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKM-KICLVEKE 91 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~ 91 (473)
....|+|||+|-.|..+|..|++. |. +++++|.+
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~a--Gvg~i~lvD~D 57 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRA--GVGKVTIVDRD 57 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCC
Confidence 356799999999999999999999 66 99999997
No 443
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=91.26 E-value=0.37 Score=40.99 Aligned_cols=34 Identities=29% Similarity=0.247 Sum_probs=30.0
Q ss_pred CcccEEEEcCCh-HHHHHHHHHHhcCCCCeEEEEecc
Q psy7710 56 ALYDVVVVGGGI-VGVATARELKLNYPKMKICLVEKE 91 (473)
Q Consensus 56 ~~~dVvIIGaGi-~Gl~~A~~L~~~~~G~~V~viE~~ 91 (473)
...+|+|||+|- +|..+|..|.++ |.+|+++.|.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~--g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNR--NATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhC--CCEEEEEECC
Confidence 457899999996 699999999998 8899999985
No 444
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=91.25 E-value=0.58 Score=43.44 Aligned_cols=35 Identities=26% Similarity=0.489 Sum_probs=27.5
Q ss_pred CCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecccc
Q psy7710 9 LYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKE 45 (473)
Q Consensus 9 ~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~ 45 (473)
|||++|||+|++|++.|..++.. +.++.++++.+.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~--gk~VLIvekR~H 35 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQL--GKRVLIVEKRNH 35 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHc--CCEEEEEecccc
Confidence 68999999999999999966643 456777776654
No 445
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.22 E-value=0.34 Score=46.49 Aligned_cols=32 Identities=25% Similarity=0.275 Sum_probs=30.0
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE 91 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~ 91 (473)
..|.|||+|..|...|..|++. |.+|+++++.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~--G~~V~~~~r~ 36 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK--GVPVRLWARR 36 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC--CCeEEEEeCC
Confidence 4699999999999999999999 8999999986
No 446
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.22 E-value=0.39 Score=37.91 Aligned_cols=31 Identities=26% Similarity=0.577 Sum_probs=27.9
Q ss_pred EEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710 60 VVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92 (473)
Q Consensus 60 VvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~ 92 (473)
|+|+|.|-.|..++..|.+. +.+|+++|+++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~--~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG--GIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT--TSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhC--CCEEEEEECCc
Confidence 78999999999999999997 78999999984
No 447
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=91.22 E-value=0.34 Score=45.64 Aligned_cols=32 Identities=28% Similarity=0.411 Sum_probs=29.8
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE 91 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~ 91 (473)
..|.|||+|..|...|..|+.. |.+|+++|+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~--G~~V~~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA--GMDVWLLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCC
Confidence 3599999999999999999999 8999999986
No 448
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=91.18 E-value=0.35 Score=44.44 Aligned_cols=34 Identities=32% Similarity=0.305 Sum_probs=30.8
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCC-CeEEEEecc
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPK-MKICLVEKE 91 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G-~~V~viE~~ 91 (473)
....|+|||.|-.|..+|..|++. | .+++|+|.+
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~--GVg~itLiD~D 63 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALART--GIGAITLIDMD 63 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHc--CCCEEEEEeCC
Confidence 356799999999999999999999 6 689999987
No 449
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=91.11 E-value=0.39 Score=48.63 Aligned_cols=40 Identities=35% Similarity=0.598 Sum_probs=33.5
Q ss_pred CCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccccc
Q psy7710 7 PTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEF 46 (473)
Q Consensus 7 ~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~~ 46 (473)
..+||++|||||+.|+++|..|+...|..++.+++++...
T Consensus 43 ~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~~ 82 (497)
T PTZ00383 43 SDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSDF 82 (497)
T ss_pred CCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcch
Confidence 3569999999999999999999966666788888887543
No 450
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.04 E-value=0.36 Score=45.90 Aligned_cols=32 Identities=16% Similarity=0.422 Sum_probs=29.7
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE 91 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~ 91 (473)
.+|.|||+|..|.+.|..|++. |.+|+++|+.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~--g~~V~~~d~~ 36 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK--GLQVVLIDVM 36 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC--CCeEEEEECC
Confidence 4699999999999999999998 8999999986
No 451
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=91.00 E-value=0.34 Score=47.19 Aligned_cols=33 Identities=24% Similarity=0.440 Sum_probs=30.3
Q ss_pred cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710 57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE 91 (473)
Q Consensus 57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~ 91 (473)
..+|+|||+|.+|+.+|..|... |.+|+++++.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~l--Ga~V~v~d~~ 199 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGL--GATVTILDIN 199 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHC--CCeEEEEECC
Confidence 45699999999999999999999 8899999986
No 452
>PRK13748 putative mercuric reductase; Provisional
Probab=90.98 E-value=0.28 Score=50.92 Aligned_cols=32 Identities=16% Similarity=0.329 Sum_probs=29.9
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE 91 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~ 91 (473)
.+++|||+|.+|+.+|..|++. |.+|+|+++.
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~--g~~Vtli~~~ 302 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARL--GSKVTILARS 302 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCEEEEEecC
Confidence 4699999999999999999999 8999999985
No 453
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=90.98 E-value=0.31 Score=48.13 Aligned_cols=37 Identities=35% Similarity=0.522 Sum_probs=31.0
Q ss_pred CCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccccc
Q psy7710 8 TLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEF 46 (473)
Q Consensus 8 ~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~~ 46 (473)
.+||.+|||+|.||.++|..++.. +.++.++++....
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~--G~~VlvlEk~~~~ 38 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKA--GLDVLVLEKGSEP 38 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHc--CCeEEEEecCCCC
Confidence 579999999999999999999965 3788888876543
No 454
>PTZ00052 thioredoxin reductase; Provisional
Probab=90.98 E-value=0.27 Score=50.14 Aligned_cols=31 Identities=19% Similarity=0.352 Sum_probs=29.3
Q ss_pred cEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKE 91 (473)
Q Consensus 59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~ 91 (473)
+++|||+|.+|+.+|..|++. |.+|+|+++.
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~--G~~Vtli~~~ 214 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNEL--GFDVTVAVRS 214 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHc--CCcEEEEEcC
Confidence 699999999999999999999 8999999875
No 455
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=90.93 E-value=0.44 Score=45.34 Aligned_cols=35 Identities=20% Similarity=0.351 Sum_probs=30.6
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEeccC
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKM-KICLVEKEK 92 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~~ 92 (473)
+..+|+|||+|..|.++|+.++.. |+ +|+++|..+
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~--gl~~i~LvDi~~ 40 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLK--NLGDVVLFDIVK 40 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCCeEEEEeCCC
Confidence 346899999999999999999988 64 899999874
No 456
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=90.80 E-value=0.43 Score=47.89 Aligned_cols=37 Identities=30% Similarity=0.462 Sum_probs=30.5
Q ss_pred CCCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccc
Q psy7710 6 SPTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEK 44 (473)
Q Consensus 6 ~~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~ 44 (473)
+..+||.+|||+|.+|+++|..++.. +.++.++++..
T Consensus 36 ~~~~~DViIVGaGPAG~~aA~~LA~~--G~~VlllEr~~ 72 (450)
T PLN00093 36 SGRKLRVAVIGGGPAGACAAETLAKG--GIETFLIERKL 72 (450)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhC--CCcEEEEecCC
Confidence 45679999999999999999988843 67888887653
No 457
>PRK14694 putative mercuric reductase; Provisional
Probab=90.68 E-value=0.32 Score=49.17 Aligned_cols=32 Identities=13% Similarity=0.332 Sum_probs=29.8
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE 91 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~ 91 (473)
.+++|||+|.+|+.+|..|++. |.+|+++++.
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~--g~~Vtlv~~~ 210 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARL--GSRVTVLARS 210 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCeEEEEECC
Confidence 4799999999999999999999 8999999975
No 458
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=90.64 E-value=0.38 Score=46.13 Aligned_cols=34 Identities=26% Similarity=0.505 Sum_probs=30.7
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKM-KICLVEKE 91 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~ 91 (473)
....|+|||+|-.|..+|..|++. |. +++|+|.+
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~a--Gvg~i~lvD~D 57 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRA--GIGKLTIADRD 57 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCC
Confidence 346799999999999999999999 75 89999997
No 459
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.49 E-value=0.37 Score=46.15 Aligned_cols=31 Identities=26% Similarity=0.453 Sum_probs=29.2
Q ss_pred cEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKE 91 (473)
Q Consensus 59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~ 91 (473)
+|.|||+|..|.+.|..|+++ |.+|+++.+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~--g~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK--KISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC--CCeEEEEecC
Confidence 589999999999999999999 8999999986
No 460
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=90.36 E-value=0.46 Score=41.91 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=30.8
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKM-KICLVEKE 91 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~ 91 (473)
....|+|||.|-.|..+|..|++. |. +++++|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~--Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGA--GVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHc--CCCeEEEecCC
Confidence 456799999999999999999999 65 89999987
No 461
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=90.31 E-value=0.38 Score=49.45 Aligned_cols=37 Identities=27% Similarity=0.389 Sum_probs=32.7
Q ss_pred CCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecccc
Q psy7710 7 PTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKE 45 (473)
Q Consensus 7 ~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~ 45 (473)
...||++|||+|.+|++.|.+|+ .++.++++.|....
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs--~~g~~VllLEaG~~ 41 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLS--DAGLSVLVLEAGGP 41 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhc--CCCCeEEEEeCCCC
Confidence 46799999999999999999999 57899999987754
No 462
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=90.27 E-value=0.38 Score=47.56 Aligned_cols=36 Identities=36% Similarity=0.584 Sum_probs=30.6
Q ss_pred CCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccc
Q psy7710 9 LYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEK 44 (473)
Q Consensus 9 ~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~ 44 (473)
|||.+|||+|++|.++|..++...++.++.++++.+
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~ 36 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAP 36 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCC
Confidence 689999999999999999998654567888888765
No 463
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.22 E-value=0.45 Score=45.17 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=30.5
Q ss_pred cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710 57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE 91 (473)
Q Consensus 57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~ 91 (473)
..+|.|||+|..|.+.|..|+++ |.+|+++++.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~--G~~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASAN--GHRVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHC--CCEEEEEeCC
Confidence 35699999999999999999999 8999999986
No 464
>KOG2304|consensus
Probab=90.18 E-value=0.35 Score=42.28 Aligned_cols=35 Identities=23% Similarity=0.460 Sum_probs=31.6
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~ 92 (473)
....|.|||+|..|.-.|.-.+.. |++|.++|++.
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~s--g~~V~l~d~~~ 44 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATS--GLNVWLVDANE 44 (298)
T ss_pred cccceEEEcccccchhHHHHHHhc--CCceEEecCCH
Confidence 446799999999999999999999 99999999873
No 465
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=90.15 E-value=0.41 Score=46.78 Aligned_cols=37 Identities=22% Similarity=0.345 Sum_probs=30.5
Q ss_pred CCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecccc
Q psy7710 7 PTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKE 45 (473)
Q Consensus 7 ~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~ 45 (473)
+++||++|||+|++|+++|..|+.. +.++.++++...
T Consensus 1 ~~~~dv~IIGgGi~G~s~A~~L~~~--g~~V~lie~~~~ 37 (376)
T PRK11259 1 TMRYDVIVIGLGSMGSAAGYYLARR--GLRVLGLDRFMP 37 (376)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHC--CCeEEEEecccC
Confidence 3579999999999999999999854 567878876643
No 466
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=90.14 E-value=0.46 Score=40.76 Aligned_cols=31 Identities=26% Similarity=0.326 Sum_probs=28.4
Q ss_pred cEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710 59 DVVVVGGGIVGVATARELKLNYPKM-KICLVEKE 91 (473)
Q Consensus 59 dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~ 91 (473)
.|+|||+|..|..+|..|++. |. +++++|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~--Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS--GVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc--CCCeEEEEeCC
Confidence 489999999999999999999 66 69999987
No 467
>PRK04148 hypothetical protein; Provisional
Probab=90.10 E-value=0.35 Score=39.13 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=29.2
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~ 92 (473)
..+++||.| .|.+.|..|++. |.+|+.+|.++
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~--G~~ViaIDi~~ 49 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKES--GFDVIVIDINE 49 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHC--CCEEEEEECCH
Confidence 469999999 999999999999 99999999874
No 468
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=89.97 E-value=0.45 Score=45.47 Aligned_cols=31 Identities=29% Similarity=0.396 Sum_probs=29.4
Q ss_pred cEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKE 91 (473)
Q Consensus 59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~ 91 (473)
+|.|||+|..|...|..|++. |.+|+++++.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~--g~~V~~~~r~ 33 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN--GHDVTLWARD 33 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC--CCEEEEEECC
Confidence 699999999999999999999 8999999986
No 469
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=89.92 E-value=0.87 Score=45.93 Aligned_cols=72 Identities=15% Similarity=0.178 Sum_probs=45.9
Q ss_pred CCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecccccccccCCCCCCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEE
Q psy7710 9 LYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFFSMSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLV 88 (473)
Q Consensus 9 ~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~vi 88 (473)
.+|.+---+-++|..+....+...+.......+... ......|+|+|+|.+|+.++..+... |.+|+++
T Consensus 125 ~~d~lssma~iAGy~Avi~Aa~~lgr~~~g~~taag---------~vp~akVlViGaG~iGl~Aa~~ak~l--GA~V~v~ 193 (511)
T TIGR00561 125 KLDALSSMANIAGYRAIIEAAHEFGRFFTGQITAAG---------KVPPAKVLVIGAGVAGLAAIGAANSL--GAIVRAF 193 (511)
T ss_pred ccCcchhhHHHHHHHHHHHHHHHhhhhcCCceecCC---------CCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEE
Confidence 345555555677776655554333221111111110 11246799999999999999999998 8899999
Q ss_pred ecc
Q psy7710 89 EKE 91 (473)
Q Consensus 89 E~~ 91 (473)
|.+
T Consensus 194 d~~ 196 (511)
T TIGR00561 194 DTR 196 (511)
T ss_pred eCC
Confidence 987
No 470
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=89.88 E-value=0.39 Score=47.62 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=29.8
Q ss_pred cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92 (473)
Q Consensus 59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~ 92 (473)
+|.|||.|..|+.+|..|+++ |.+|+++|+.+
T Consensus 2 kI~vIGlG~~G~~lA~~La~~--G~~V~~~d~~~ 33 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADL--GHEVTGVDIDQ 33 (411)
T ss_pred EEEEECCCchhHHHHHHHHhc--CCeEEEEECCH
Confidence 589999999999999999999 89999999874
No 471
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=89.80 E-value=0.46 Score=47.07 Aligned_cols=33 Identities=21% Similarity=0.360 Sum_probs=30.5
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~ 92 (473)
..|.|||.|..|+.+|..|+++ |.+|+++|+++
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~--G~~V~~~D~~~ 36 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASR--QKQVIGVDINQ 36 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhC--CCEEEEEeCCH
Confidence 4699999999999999999999 89999999864
No 472
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.68 E-value=0.6 Score=44.21 Aligned_cols=36 Identities=31% Similarity=0.290 Sum_probs=30.2
Q ss_pred cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710 57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92 (473)
Q Consensus 57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~ 92 (473)
+.+|.|||+|-+|.++|+.|+..+-..+++|+|...
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 458999999999999999999884334799999763
No 473
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=89.56 E-value=0.59 Score=39.62 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=28.1
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE 91 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~ 91 (473)
.+|.+||-|..|...|.+|.++ |.+|.++++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~--g~~v~~~d~~ 33 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKA--GYEVTVYDRS 33 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHT--TTEEEEEESS
T ss_pred CEEEEEchHHHHHHHHHHHHhc--CCeEEeeccc
Confidence 4699999999999999999999 9999999987
No 474
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=89.56 E-value=0.6 Score=38.53 Aligned_cols=31 Identities=32% Similarity=0.442 Sum_probs=28.5
Q ss_pred cEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710 59 DVVVVGGGIVGVATARELKLNYPKM-KICLVEKE 91 (473)
Q Consensus 59 dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~ 91 (473)
.|+|||+|-.|..+|..|++. |. +++++|.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~--Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS--GVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC--CCCEEEEEcCC
Confidence 489999999999999999999 65 89999987
No 475
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=89.52 E-value=0.47 Score=44.30 Aligned_cols=31 Identities=19% Similarity=0.322 Sum_probs=29.0
Q ss_pred cEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKE 91 (473)
Q Consensus 59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~ 91 (473)
.|.|||.|..|.+.|..|+++ |.+|+++++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~ 32 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRR 32 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCEEEEEECC
Confidence 589999999999999999999 8999999986
No 476
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=89.48 E-value=0.5 Score=44.13 Aligned_cols=33 Identities=27% Similarity=0.397 Sum_probs=29.7
Q ss_pred cccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710 57 LYDVVVVGGGIVGVATARELKLNYPKM-KICLVEKE 91 (473)
Q Consensus 57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~ 91 (473)
...|+|||+|-+|.++|+.|++. |. +|+|++|.
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~--G~~~I~I~nR~ 160 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTL--GVERLTIFDVD 160 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc--CCCEEEEECCC
Confidence 35799999999999999999998 75 79999986
No 477
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=89.42 E-value=0.57 Score=41.65 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=30.3
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKM-KICLVEKE 91 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~ 91 (473)
....|+|||+|-.|..+|..|++. |. +++++|.+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~--Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARS--GVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHc--CCCeEEEEeCC
Confidence 356799999999999999999999 55 69999987
No 478
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=89.37 E-value=0.51 Score=46.34 Aligned_cols=34 Identities=26% Similarity=0.267 Sum_probs=30.5
Q ss_pred cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710 57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92 (473)
Q Consensus 57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~ 92 (473)
...|+|+|+|..|+.+|..+... |.+|+++|..+
T Consensus 202 GktVvViG~G~IG~~va~~ak~~--Ga~ViV~d~d~ 235 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQ--GARVIVTEVDP 235 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCEEEEEECCh
Confidence 34799999999999999999988 89999999863
No 479
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=89.08 E-value=0.74 Score=43.72 Aligned_cols=34 Identities=26% Similarity=0.424 Sum_probs=30.0
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCC--eEEEEecc
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKM--KICLVEKE 91 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~--~V~viE~~ 91 (473)
...+|.|||+|-+|.++|+.|+.. +. .+.|+|..
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~--~~~~el~L~D~~ 40 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQ--GIADELVIIDIN 40 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc--CCCCEEEEEeCC
Confidence 346899999999999999999988 65 79999985
No 480
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.02 E-value=0.65 Score=47.46 Aligned_cols=36 Identities=42% Similarity=0.743 Sum_probs=30.9
Q ss_pred CCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccc
Q psy7710 7 PTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEK 44 (473)
Q Consensus 7 ~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~ 44 (473)
+.+||.+|||+|++|+++|..++.. +.++.++++.+
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~r--G~~V~LlEk~d 39 (502)
T PRK13369 4 PETYDLFVIGGGINGAGIARDAAGR--GLKVLLCEKDD 39 (502)
T ss_pred CcccCEEEECCCHHHHHHHHHHHhC--CCcEEEEECCC
Confidence 4569999999999999999999965 67888888773
No 481
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=89.00 E-value=0.52 Score=47.85 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=30.5
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~ 92 (473)
..|.|||+|..|...|..|+++ |++|+++|+.+
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~a--G~~V~l~d~~~ 38 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASA--GHQVLLYDIRA 38 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCH
Confidence 4599999999999999999999 99999999874
No 482
>PRK06223 malate dehydrogenase; Reviewed
Probab=88.95 E-value=0.6 Score=44.28 Aligned_cols=32 Identities=25% Similarity=0.480 Sum_probs=28.9
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKM-KICLVEKE 91 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~ 91 (473)
.+|.|||+|..|.++|+.++.. |. +|+++|..
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~--~~~ev~L~D~~ 35 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALK--ELGDVVLFDIV 35 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCeEEEEEECC
Confidence 4799999999999999999988 54 99999985
No 483
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=88.93 E-value=0.71 Score=40.63 Aligned_cols=33 Identities=27% Similarity=0.229 Sum_probs=30.0
Q ss_pred cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710 57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE 91 (473)
Q Consensus 57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~ 91 (473)
...++|+|.|-.|..+|..|.+. |.+|++.|+.
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~--G~~Vvv~D~~ 60 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEE--GAKLIVADIN 60 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCC
Confidence 35699999999999999999999 9999999875
No 484
>PRK10015 oxidoreductase; Provisional
Probab=88.72 E-value=0.69 Score=46.16 Aligned_cols=36 Identities=22% Similarity=0.464 Sum_probs=29.9
Q ss_pred CCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecccc
Q psy7710 8 TLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKE 45 (473)
Q Consensus 8 ~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~ 45 (473)
.+||.+|||+|.+|.++|..++.. +.++.++++...
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~--G~~VlliEr~~~ 39 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARA--GLDVLVIERGDS 39 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhC--CCeEEEEecCCC
Confidence 469999999999999999999853 678888876643
No 485
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=88.65 E-value=0.71 Score=47.21 Aligned_cols=36 Identities=33% Similarity=0.622 Sum_probs=30.5
Q ss_pred CCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccc
Q psy7710 7 PTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEK 44 (473)
Q Consensus 7 ~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~ 44 (473)
+.+||.+|||+|++|+++|..++.. +.++.++++.+
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~r--Gl~V~LvEk~d 39 (508)
T PRK12266 4 METYDLLVIGGGINGAGIARDAAGR--GLSVLLCEQDD 39 (508)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHC--CCeEEEEecCC
Confidence 3569999999999999999999854 67888888763
No 486
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=88.61 E-value=2.5 Score=46.06 Aligned_cols=33 Identities=18% Similarity=0.304 Sum_probs=23.1
Q ss_pred ccEEEEcCChHHHHHHHHHHhc-CCCCeEEEEec
Q psy7710 58 YDVVVVGGGIVGVATARELKLN-YPKMKICLVEK 90 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~-~~G~~V~viE~ 90 (473)
..|+|||||.+|+-+|..+... .-+..+++.+.
T Consensus 551 k~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~ 584 (1028)
T PRK06567 551 MPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDY 584 (1028)
T ss_pred CCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhh
Confidence 4799999999999999866531 01455555554
No 487
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=88.60 E-value=0.66 Score=47.17 Aligned_cols=32 Identities=19% Similarity=0.472 Sum_probs=29.9
Q ss_pred cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92 (473)
Q Consensus 59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~ 92 (473)
.|.|||+|..|...|..|+++ |.+|+++|+.+
T Consensus 6 kIavIG~G~MG~~iA~~la~~--G~~V~v~D~~~ 37 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLA--GIDVAVFDPHP 37 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCH
Confidence 599999999999999999999 99999999863
No 488
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=88.59 E-value=0.65 Score=41.76 Aligned_cols=33 Identities=30% Similarity=0.460 Sum_probs=29.5
Q ss_pred cccEEEEcCChHHHHHHHHHHhcCCCC---eEEEEecc
Q psy7710 57 LYDVVVVGGGIVGVATARELKLNYPKM---KICLVEKE 91 (473)
Q Consensus 57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~---~V~viE~~ 91 (473)
...++|+|+|-+|..+|..|.+. |. +|.+++|.
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~--G~~~~~i~ivdr~ 60 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAA--GAKPENIVVVDSK 60 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHc--CcCcceEEEEeCC
Confidence 35699999999999999999998 76 59999997
No 489
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=88.38 E-value=0.74 Score=45.35 Aligned_cols=36 Identities=39% Similarity=0.543 Sum_probs=30.0
Q ss_pred CCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccc
Q psy7710 7 PTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEK 44 (473)
Q Consensus 7 ~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~ 44 (473)
..++|.+|||+|++|.++|..|+.. +.++.++++.+
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~--G~~v~liE~~~ 39 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADA--GLSVALVEGRE 39 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcC--CCEEEEEeCCC
Confidence 5668999999999999999998853 56787888764
No 490
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=88.37 E-value=0.63 Score=43.99 Aligned_cols=32 Identities=16% Similarity=0.429 Sum_probs=29.0
Q ss_pred cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92 (473)
Q Consensus 59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~ 92 (473)
.|.|+|+|..|...|+.|++. |..|+++-|.+
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~--g~~V~~~~R~~ 33 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKA--GHDVTLLVRSR 33 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhC--CCeEEEEecHH
Confidence 589999999999999999999 77888888874
No 491
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=88.33 E-value=0.57 Score=44.23 Aligned_cols=31 Identities=26% Similarity=0.553 Sum_probs=27.7
Q ss_pred EEEEcCChHHHHHHHHHHhcCCCC-eEEEEeccC
Q psy7710 60 VVVVGGGIVGVATARELKLNYPKM-KICLVEKEK 92 (473)
Q Consensus 60 VvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~~ 92 (473)
|.|||+|..|..+|+.|+.. +. +|+++|...
T Consensus 1 I~IIGaG~vG~~ia~~la~~--~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK--ELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC--CCcEEEEEeCCC
Confidence 57999999999999999988 55 999999863
No 492
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=88.29 E-value=0.78 Score=41.65 Aligned_cols=35 Identities=23% Similarity=0.262 Sum_probs=30.6
Q ss_pred CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE 91 (473)
Q Consensus 56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~ 91 (473)
....|+|||+|-.|..+|..|++.+- -+++++|.+
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gv-g~i~lvD~D 57 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGV-GNLTLLDFD 57 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCC-CEEEEEeCC
Confidence 35689999999999999999999943 489999987
No 493
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=88.16 E-value=0.64 Score=47.31 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=30.5
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~ 92 (473)
..|.|||+|..|...|..|+++ |++|+++|+.+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~a--G~~V~l~D~~~ 40 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQA--GHTVLLYDARA 40 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCH
Confidence 4599999999999999999999 99999999874
No 494
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.10 E-value=15 Score=36.41 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=30.5
Q ss_pred cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710 57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92 (473)
Q Consensus 57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~ 92 (473)
..+|+|+|+|+.-+-.-+.|.++++-.+|+++-|..
T Consensus 196 ~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG 231 (474)
T COG4529 196 DDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG 231 (474)
T ss_pred CCceEEecCCchhHHHHHHHhccCCccceEEEeccc
Confidence 345999999999999999999986557899999873
No 495
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=88.03 E-value=0.73 Score=43.65 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=28.8
Q ss_pred cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92 (473)
Q Consensus 59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~ 92 (473)
+|+|||+|.+|.++|+.|+..+...+++++|+..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 5899999999999999999982115899999863
No 496
>KOG4716|consensus
Probab=88.01 E-value=1 Score=42.16 Aligned_cols=63 Identities=16% Similarity=0.143 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHcCcEEEeCceEEEEEEcC-CeEEEE---cCCC--cEEEcCEEEEcCCcChHHHHHhcCCC
Q psy7710 206 VTRVMGEEFCELGGEIRLNQQVESFKENP-ESVTIS---TKQG--DHLESSYALVCAGLQADEMALKSGCS 270 (473)
Q Consensus 206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~-~~v~v~---~~~g--~~i~ad~VV~aaG~~s~~l~~~~g~~ 270 (473)
+.+.+.+.++++|+++...+...++++.+ +...|. |..+ .+-..|.|++|.|--+ +.+.+|++
T Consensus 240 mae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~--~~~~l~L~ 308 (503)
T KOG4716|consen 240 MAELVAEHMEERGIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKA--LTDDLNLD 308 (503)
T ss_pred HHHHHHHHHHHhCCceeecccceeeeeccCCcEEEEeecccccccccchhhhhhhhhcccc--chhhcCCC
Confidence 45557778888999998887777777654 333332 2222 2345789999999764 44555554
No 497
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=87.75 E-value=0.74 Score=37.61 Aligned_cols=31 Identities=29% Similarity=0.426 Sum_probs=26.9
Q ss_pred EEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710 60 VVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92 (473)
Q Consensus 60 VvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~ 92 (473)
++|+|+|..+.++|..++.. |++|+|+|..+
T Consensus 1 L~I~GaG~va~al~~la~~l--g~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALL--GFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHC--TEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhC--CCEEEEEcCCc
Confidence 58999999999999999999 99999999874
No 498
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=87.73 E-value=0.86 Score=40.77 Aligned_cols=31 Identities=26% Similarity=0.319 Sum_probs=28.2
Q ss_pred cEEEEc-CChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710 59 DVVVVG-GGIVGVATARELKLNYPKMKICLVEKE 91 (473)
Q Consensus 59 dVvIIG-aGi~Gl~~A~~L~~~~~G~~V~viE~~ 91 (473)
+|.||| +|..|.+.|..|+++ |.+|+++++.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~--G~~V~v~~r~ 33 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKA--GNKIIIGSRD 33 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhC--CCEEEEEEcC
Confidence 589997 799999999999999 8999999876
No 499
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=87.64 E-value=0.65 Score=49.49 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=30.6
Q ss_pred ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92 (473)
Q Consensus 58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~ 92 (473)
..|.|||+|..|...|+.++.. |++|+++|..+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~--G~~V~l~d~~~ 346 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASK--GVPVIMKDINQ 346 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhC--CCeEEEEeCCH
Confidence 4699999999999999999999 99999999873
No 500
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=87.64 E-value=1.5 Score=32.49 Aligned_cols=33 Identities=33% Similarity=0.372 Sum_probs=28.8
Q ss_pred cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEec
Q psy7710 57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEK 90 (473)
Q Consensus 57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~ 90 (473)
..+++|+|+|.+|..+|..|.+.+ +.+|.++++
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~-~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEG-GKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 456999999999999999999874 478999988
Done!