RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7710
(473 letters)
>gnl|CDD|183292 PRK11728, PRK11728, hydroxyglutarate oxidase; Provisional.
Length = 393
Score = 523 bits (1350), Expect = 0.0
Identities = 178/362 (49%), Positives = 235/362 (64%), Gaps = 3/362 (0%)
Query: 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPG 115
A+YD V++GGGIVG++TA +L+ YP +I ++EKE HQTGHNSGV+HAG+YY PG
Sbjct: 1 AMYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARHQTGHNSGVIHAGVYYTPG 60
Query: 116 TLKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNEQ-LEPLHDLYERSIQNNVKDVRL 174
+LKA+ C G + D+ IPY++CGKL+VA +E LE + LYER+ N + +V
Sbjct: 61 SLKARFCRRGNEATKAFCDQHGIPYEECGKLLVATSELELERMEALYERARANGI-EVER 119
Query: 175 VSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENP 234
+ AEE++ EP +G+ AI P+TGIVD+ V M E GGEIRL +V + E+
Sbjct: 120 LDAEELREREPNIRGLGAIFVPSTGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHA 179
Query: 235 ESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVR 294
V + T QG+ E+ + CAGL +D +A +G + IVPFRGEY L P K LV
Sbjct: 180 NGVVVRTTQGE-YEARTLINCAGLMSDRLAKMAGLEPDFRIVPFRGEYYRLAPEKNQLVN 238
Query: 295 GNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGF 354
IYPVPDP FPFLGVH T +DGSV +GPNAVLAFK+EGYR RDFS+R+L L YPGF
Sbjct: 239 HLIYPVPDPAFPFLGVHLTRMIDGSVTVGPNAVLAFKREGYRKRDFSLRDLLEILTYPGF 298
Query: 355 WRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVD 414
W+L K+ R G EM S S + +++Y + D+Q P+GVRAQA+S G LVD
Sbjct: 299 WKLAQKHWRSGLGEMKNSLSKSGYLRLVQKYCPSLTLSDLQPYPAGVRAQAVSRDGKLVD 358
Query: 415 DF 416
DF
Sbjct: 359 DF 360
Score = 66.8 bits (164), Expect = 6e-12
Identities = 21/49 (42%), Positives = 26/49 (53%)
Query: 417 GVKAIHSPHTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPEMV 465
G+ AI P TGIVD+ V M E GGEIRL +V + E+ V
Sbjct: 134 GLGAIFVPSTGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHANGV 182
>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function
prediction only].
Length = 429
Score = 328 bits (843), Expect = e-108
Identities = 140/365 (38%), Positives = 201/365 (55%), Gaps = 6/365 (1%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTL 117
YDVV++GGGI+G ATA EL P + + L+EKE + + +NSGV+HAG+YY PG+L
Sbjct: 4 YDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSL 63
Query: 118 KAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVS 176
KAKLCV G + + IP+ CGKL VA E ++E L LYER N V D+ ++
Sbjct: 64 KAKLCVAGNINEFAICKQLGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILD 123
Query: 177 AEEIKTIEPY--CKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENP 234
EEIK +EP V A+ P+ GIVD G +TR + EE G E+RLN +V ++
Sbjct: 124 KEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQS 183
Query: 235 ESVT-ISTKQGD-HLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHL 292
+ V ++T G+ LE+ + + AGL AD +A +G + I P RGEYL+L+ + L
Sbjct: 184 DGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAGIPEDFKIFPVRGEYLVLDNEVKAL 243
Query: 293 VRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLA-FKKEGYRWRDFSVRELFSTLRY 351
+R IYPVP+P P LGVH TP +DGS+ GPNA+ + +G R DF + +
Sbjct: 244 LRHKIYPVPNPGLPGLGVHHTPTIDGSLLFGPNALDSPKFLKGDRGVDFDLLDSVRKANS 303
Query: 352 PGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGD 411
G LG+K + I R+ L I E + D +G+R+Q L++
Sbjct: 304 RGMPDLGIKNNVLANYAGIRPILKEPRLPALDFIIPEAKDEDWFINVAGIRSQGLTADPA 363
Query: 412 LVDDF 416
+
Sbjct: 364 IAGGV 368
Score = 47.3 bits (113), Expect = 1e-05
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 412 LVDDFGVKAIHSPHTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPEMV 465
L+++ V A+ P GIVD G +TR + EE G E+RLN +V ++ + V
Sbjct: 133 LLNEGAVAALLVPSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQSDGV 186
>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase. This family includes
various FAD dependent oxidoreductases:
Glycerol-3-phosphate dehydrogenase EC:1.1.99.5,
Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine
oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Length = 234
Score = 159 bits (404), Expect = 6e-46
Identities = 64/236 (27%), Positives = 110/236 (46%), Gaps = 16/236 (6%)
Query: 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLK 118
DVVV+GGGIVG++TA EL + + L+E+ +L +G N+G++H G+ + L
Sbjct: 1 DVVVIGGGIVGLSTAYELAR--RGLSVTLLERG-DLASGASGRNAGLLHPGLRKERAPLL 57
Query: 119 AKLCVEGMNLAYEYFDKRNIP--YKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLV 175
A+L +E +L E ++ I +++ G L++A +E +L+ L L + V L+
Sbjct: 58 ARLALESRDLWRELIEELGIDCDFRRTGVLVLARDEAELDALRRLAAALRALGL-PVELL 116
Query: 176 SAEEIKTIEPYCKG--VKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKEN 233
AEE++ +EP + P+ G VD + R + LG EI +V +
Sbjct: 117 DAEELRELEPGLSPGIRGGLFYPDGGHVDPARLLRALARAAEALGVEILEGTEVTGLERE 176
Query: 234 PESVTISTKQGDHLESSYALVCAGLQAD------EMALKSGCSLEPAIVPFRGEYL 283
VT+ T+ G + + + D E L++ L PA+ L
Sbjct: 177 GGGVTVETEDG-EIRADKVVNADSSGEDIDYLLLEELLEAARRLFPALADADILLL 231
Score = 41.9 bits (99), Expect = 3e-04
Identities = 11/62 (17%), Positives = 17/62 (27%), Gaps = 1/62 (1%)
Query: 402 RAQALSSSGDLVDDFGVKAIHSPHTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKEN 461
+ L + P G VD + R + LG EI +V +
Sbjct: 118 AEELRELEPGLSPGI-RGGLFYPDGGHVDPARLLRALARAAEALGVEILEGTEVTGLERE 176
Query: 462 PE 463
Sbjct: 177 GG 178
>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino
acid transport and metabolism].
Length = 387
Score = 114 bits (287), Expect = 4e-28
Identities = 80/323 (24%), Positives = 124/323 (38%), Gaps = 25/323 (7%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTL 117
DVV++GGGIVG++ A L + ++E E G G N+G + A G L
Sbjct: 5 MDVVIIGGGIVGLSAAYYLAERGA--DVTVLEAG-EAGGGAAGRNAGGILAPWASPGGEL 61
Query: 118 KAKLCVEGMNLAYEYFDK------RNIPYKKCGKLIVALNEQLEPLHDLY--ERSIQNNV 169
+ +L+ + + ++ G L +A E L+ L L ++
Sbjct: 62 EV---RPLADLSLALWRELSEELGTGAGLRRRGLLDLAAREGLKGLAQLERLAAELEAAG 118
Query: 170 KDVRLVSAEEIKTIEPYCKG---VKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQ 226
+D L+ A E +EP + P G +D L+TR + ELG I
Sbjct: 119 EDAELLDAAEAAELEPALGPDFVCGGLFDPTGGHLDPRLLTRALAAAAEELGVVIIEGGT 178
Query: 227 -VESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLL 285
V S + + V + T G +E+ ++ AG A E+A G L + P RG+ L
Sbjct: 179 PVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWAGELAATLG-ELPLPLRPVRGQALTT 236
Query: 286 NPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWR-DFSVRE 344
P + L G V G + PR DG + +G R D + E
Sbjct: 237 EPPEGLLADGLAPVVLV--VDDGGGYIRPRGDGRLRVGGTDEEGGDDPSDPEREDLVIAE 294
Query: 345 LFSTLR--YPGFWRLGLKYTRYG 365
L R PG G++ G
Sbjct: 295 LLRVARALLPGLADAGIEAAWAG 317
>gnl|CDD|240393 PTZ00383, PTZ00383, malate:quinone oxidoreductase; Provisional.
Length = 497
Score = 59.8 bits (145), Expect = 1e-09
Identities = 76/306 (24%), Positives = 129/306 (42%), Gaps = 41/306 (13%)
Query: 53 QSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGM---HQTGHNSGVVHAG 109
+YDVV+VGGG+ G A L KI L+E+ + + H +NS +H G
Sbjct: 41 LGSDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSDFALVASHGK-NNSQTIHCG 99
Query: 110 -IYYKPGTLKAKLCVEGMNLAYEYF-----DKRNIPYKKCGKLIVALNE-QLEPLHDLYE 162
I KA+ ++ Y +R+ K K+++ + E + E L Y
Sbjct: 100 DIETNYTLEKARKVKRQADMLRNYLTKLPPSERDSIIFKMQKMVLGVGEKECEFLEKRYP 159
Query: 163 RSIQNNVKDVRLVSAEEIKTIEPYCKGVK-----------AIHSPN--TGIVDWGLVTR- 208
+ ++L+ +EI +EP +K A++ PN T VD+ ++
Sbjct: 160 -VFKELFPSMQLLDKKEIHRVEP-RVVLKNNHTLREEPLAALYVPNELTT-VDYQKLSES 216
Query: 209 -VMGEEFCEL--GGEIR--LNQQVESFKENPESV-TISTKQGDHLESSYALVCAGLQADE 262
V L G +I LN +V + + + +S+ I T +G+ + + + +V A +
Sbjct: 217 FVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRGE-IRARFVVVSACGYSLL 275
Query: 263 MALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPR--MDGSV 320
A K G LE + +P G + +++ G +Y V +P PF VH P G
Sbjct: 276 FAQKMGYGLEYSCLPVAGSFYF----SGNILNGKVYTVQNPALPFAAVHGDPDIIAKGKT 331
Query: 321 WLGPNA 326
GP A
Sbjct: 332 RFGPTA 337
>gnl|CDD|233831 TIGR02352, thiamin_ThiO, glycine oxidase ThiO. This family
consists of the homotetrameric, FAD-dependent glycine
oxidase ThiO, from species such as Bacillus subtilis
that use glycine in thiamine biosynthesis. In general,
members of this family will not be found in species such
as E. coli that instead use tyrosine and the ThiH
protein [Biosynthesis of cofactors, prosthetic groups,
and carriers, Thiamine].
Length = 337
Score = 50.1 bits (120), Expect = 1e-06
Identities = 52/197 (26%), Positives = 83/197 (42%), Gaps = 35/197 (17%)
Query: 140 YKKCGKLIVALNE----QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKG--VKAI 193
Y +CG L+VA +E L L DL + +V +S ++ +EPY G A+
Sbjct: 71 YHQCGTLVVAFDEDDVEHLRQLADLQSATGM----EVEWLSGRALRRLEPYLSGGIRGAV 126
Query: 194 HSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVT-ISTKQGDHLESSYA 252
P+ VD + + + + +LG EI + +V+ + E VT I T GD ++
Sbjct: 127 FYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSGDV-QADQV 185
Query: 253 LVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHF 312
++ AG A E+ L + P RG+ +R VP N P V +
Sbjct: 186 VLAAGAWAGEL-------LPLPLRPVRGQ----------PLRLEAPAVPLLNRPLRAVVY 228
Query: 313 T------PRMDGSVWLG 323
PR DG + +G
Sbjct: 229 GRRVYIVPRRDGRLVVG 245
>gnl|CDD|223651 COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy
production and conversion].
Length = 532
Score = 49.6 bits (119), Expect = 2e-06
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYY 112
+DV+V+GGGI G AR+ +K+ LVEK +L + ++ ++H G+ Y
Sbjct: 13 FDVIVIGGGITGAGIARDAAGR--GLKVALVEK-GDLASGTSSRSTKLIHGGLRY 64
Score = 40.0 bits (94), Expect = 0.003
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 10 YDMVVVGGGIVGVATARELKLKYPKMKTCLVEK 42
+D++V+GGGI G AR+ + +K LVEK
Sbjct: 13 FDVIVIGGGITGAGIARDAAGR--GLKVALVEK 43
>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production
and conversion].
Length = 396
Score = 41.7 bits (98), Expect = 5e-04
Identities = 39/190 (20%), Positives = 59/190 (31%), Gaps = 57/190 (30%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTL 117
YDVV+VG G G + AR L + + ++EK E G
Sbjct: 4 YDVVIVGAGPAGSSAARRLAKAG--LDVLVLEKGSEPG---------------------- 39
Query: 118 KAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSA 177
K C ++ LE L ++ I+ V R+
Sbjct: 40 ----------------------AKPCCGGGLSPRA-LEELIPDFDEEIERKVTGARIYFP 76
Query: 178 EEIKTIE-PYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPES 236
E IE P +G IVD + + E E G E+ +V +
Sbjct: 77 GEKVAIEVPVGEGY---------IVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDG 127
Query: 237 VTISTKQGDH 246
V + + GD
Sbjct: 128 VVVGVRAGDD 137
Score = 34.7 bits (80), Expect = 0.095
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 10 YDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEF 46
YD+V+VG G G + AR L + ++EK E
Sbjct: 4 YDVVIVGAGPAGSSAARRLAKAG--LDVLVLEKGSEP 38
>gnl|CDD|130387 TIGR01320, mal_quin_oxido, malate:quinone-oxidoreductase. This
membrane-associated enzyme is an alternative to the
better-known NAD-dependent malate dehydrogenase as part
of the TCA cycle. The reduction of a quinone rather than
NAD+ makes the reaction essentially irreversible in the
direction of malate oxidation to oxaloacetate. Both
forms of malate dehydrogenase are active in E. coli;
disruption of this form causes less phenotypic change.
In some bacteria, this form is the only or the more
important malate dehydrogenase [Energy metabolism, TCA
cycle].
Length = 483
Score = 41.4 bits (97), Expect = 8e-04
Identities = 59/233 (25%), Positives = 94/233 (40%), Gaps = 33/233 (14%)
Query: 201 VDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPES---VTI-STKQGDHLE--SSYALV 254
VD+G +T+ + + G IR +V + K + VT+ +T+ G + + V
Sbjct: 175 VDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFV 234
Query: 255 CAGLQADEMALKSGCSLEP--AIVPFRGEYLLL-NP--AKQHLVRGNIYPVPDPNFPFLG 309
AG A + KSG A P G +L NP +QH R +Y P +
Sbjct: 235 GAGGGALPLLQKSGIPEVKGFAGFPVSGLFLRCGNPELTEQH--RAKVYGQASVGAPPMS 292
Query: 310 V-HFTPR-MDGSVWL--GPNAVLA--FKKEGYRWRDFSVRELFSTLR------YPGFWRL 357
V H R +DG WL GP A + F K G S+ +L ++R G
Sbjct: 293 VPHLDTRVVDGKKWLLFGPYAGWSPKFLKHG------SILDLPLSIRPDNLLSMLGVGLT 346
Query: 358 GLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSG 410
+ T+Y ++ S RV+ L+++ E D + +G R Q +
Sbjct: 347 EMDLTKYLIGQLRKS--EEERVSALREFYPEAIDSDWELIVAGQRVQVIKKDP 397
>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase,
UbiH/UbiF/VisC/COQ6 family. This model represents a
family of FAD-dependent hydroxylases (monooxygenases)
which are all believed to act in the aerobic ubiquinone
biosynthesis pathway. A separate set of hydroxylases,
as yet undiscovered, are believed to be active under
anaerobic conditions. In E. coli three enzyme
activities have been described, UbiB (which acts first
at position 6, see TIGR01982), UbiH (which acts at
position 4,) and UbiF (which acts at position 5,). UbiH
and UbiF are similar to one another and form the basis
of this subfamily. Interestingly, E. coli contains
another hydroxylase gene, called visC, that is highly
similar to UbiF, adjacent to UbiH and, when mutated,
results in a phenotype similar to that of UbiH (which
has also been named visB). Several other species appear
to have three homologs in this family, although they
assort themselves differently on phylogenetic trees
(e.g. Xylella and Mesorhizobium) making it difficult to
ascribe a specific activity to each one. Eukaryotes
appear to have only a single homolog in this subfamily
(COQ6,) which complements UbiH, but also possess a
non-orthologous gene, COQ7 which complements UbiF
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Menaquinone and ubiquinone].
Length = 387
Score = 40.3 bits (95), Expect = 0.002
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQT 99
D+V+VGGG VG+A A L + +K+ L+E L
Sbjct: 1 DIVIVGGGPVGLALALALARS-GGLKVALIEA-TPLPAPAD 39
Score = 36.8 bits (86), Expect = 0.022
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 11 DMVVVGGGIVGVATARELKLKYPKMKTCLVEK 42
D+V+VGGG VG+A A L +K L+E
Sbjct: 1 DIVIVGGGPVGLALALALARS-GGLKVALIEA 31
>gnl|CDD|233383 TIGR01373, soxB, sarcosine oxidase, beta subunit family,
heterotetrameric form. This model describes the beta
subunit of a family of known and putative
heterotetrameric sarcosine oxidases. Five operons of
such oxidases are found in Mesorhizobium loti and three
in Agrobacterium tumefaciens, a high enough copy number
to suggest that not all members are share the same
function. The model is designated as subfamily rather
than equivalog for this reason. Sarcosine oxidase
catalyzes the oxidative demethylation of sarcosine to
glycine. The reaction converts tetrahydrofolate to
5,10-methylene-tetrahydrofolate. The enzyme is known in
monomeric and heterotetrameric (alpha,beta,gamma,delta)
forms [Energy metabolism, Amino acids and amines].
Length = 407
Score = 40.6 bits (95), Expect = 0.002
Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 14/135 (10%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTL 117
YDV++VGGG G+ATA L + + ++EK LG TG N+ +V + Y
Sbjct: 31 YDVIIVGGGGHGLATAYYLAKEHGITNVAVLEK-GWLGGGNTGRNTTIVRSNYLYPESAE 89
Query: 118 KAKLCV---EGMNLAYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYER---SIQNNVKD 171
+ + EG++ Y N+ + + G L + + D R +++ N D
Sbjct: 90 LYEHAMKLWEGLSQDLNY----NVMFSQRGVLNLCHSTA---DMDDGARRVNAMRLNGVD 142
Query: 172 VRLVSAEEIKTIEPY 186
L+S E+++ + P
Sbjct: 143 AELLSPEQVRRVIPI 157
>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and
related FAD-dependent oxidoreductases [Coenzyme
metabolism / Energy production and conversion].
Length = 387
Score = 39.7 bits (93), Expect = 0.002
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEK 90
DV +VG G G+A A L + + L+E+
Sbjct: 3 LDVAIVGAGPAGLALALALARA--GLDVTLLER 33
Score = 38.5 bits (90), Expect = 0.005
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 10 YDMVVVGGGIVGVATARELKLKYPKMKTCLVEK 42
D+ +VG G G+A A L + L+E+
Sbjct: 3 LDVAIVGAGPAGLALALALARA--GLDVTLLER 33
>gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism].
Length = 444
Score = 39.2 bits (92), Expect = 0.004
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 60 VVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95
+ ++GGGI G++ A L+ P +++ L E + +G
Sbjct: 3 IAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVG 38
Score = 33.5 bits (77), Expect = 0.23
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 13 VVVGGGIVGVATARELKLKYPKMKTCLVEKE 43
++GGGI G++ A L+ P ++ L E +
Sbjct: 4 AIIGGGIAGLSAAYRLQKAGPDVEVTLFEAD 34
>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 283
Score = 38.1 bits (89), Expect = 0.006
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMH 97
DVV++GGG G+A A L +K+ L+E+E +
Sbjct: 1 DVVIIGGGPAGLAAAIRLA--RLGLKVALIEREGGTCYN 37
Score = 32.7 bits (75), Expect = 0.35
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 11 DMVVVGGGIVGVATARELKLKYPKMKTCLVEKE 43
D+V++GGG G+A A L +K L+E+E
Sbjct: 1 DVVIIGGGPAGLAAAIR--LARLGLKVALIERE 31
>gnl|CDD|180935 PRK07333, PRK07333, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Provisional.
Length = 403
Score = 38.4 bits (90), Expect = 0.007
Identities = 42/208 (20%), Positives = 73/208 (35%), Gaps = 53/208 (25%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTL 117
DVV+ GGG VG+A A LK P + + +V+ + S + A
Sbjct: 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAA--------- 52
Query: 118 KAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALN------EQLEPLHDLY--ERSIQNNV 169
+++ AL + +P+ D+ + + V
Sbjct: 53 -------------------------ARRMLEALGVWDEIAPEAQPITDMVITDSRTSDPV 87
Query: 170 KDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVES 229
+ V L E++ EP+ V N +++ L R LG ++R V
Sbjct: 88 RPVFLTFEGEVEPGEPFAHMV-----ENRVLIN-ALRKRAE-----ALGIDLREATSVTD 136
Query: 230 FKENPESVTISTKQGDHLESSYALVCAG 257
F+ E VT++ G LE+ + G
Sbjct: 137 FETRDEGVTVTLSDGSVLEARLLVAADG 164
Score = 30.7 bits (70), Expect = 1.7
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 10 YDMVVVGGGIVGVATARELKLKYPKMKTCLVE 41
D+V+ GGG VG+A A LK P + +V+
Sbjct: 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVD 33
>gnl|CDD|218866 pfam06039, Mqo, Malate:quinone oxidoreductase (Mqo). This family
consists of several bacterial Malate:quinone
oxidoreductase (Mqo) proteins (EC:1.1.99.16). Mqo takes
part in the citric acid cycle. It oxidises L-malate to
oxaloacetate and donates electrons to ubiquinone-1 and
other artificial acceptors or, via the electron transfer
chain, to oxygen. NAD is not an acceptor and the natural
direct acceptor for the enzyme is most likely a quinone.
The enzyme is therefore called malate:quinone
oxidoreductase, abbreviated to Mqo. Mqo is a peripheral
membrane protein and can be released from the membrane
by addition of chelators.
Length = 489
Score = 38.4 bits (90), Expect = 0.007
Identities = 58/228 (25%), Positives = 101/228 (44%), Gaps = 34/228 (14%)
Query: 201 VDWGLVTRVMGEEF-CELGGEIRLNQQVESFKENPE---SVTIS---TKQGDHLESSYAL 253
V++G +TR + + + E++ N +V K N + +VT+ T +++ +
Sbjct: 179 VNFGALTRQLFKYLQQKPNVELQYNHEVRDIKRNSDGTWTVTVKDLNTGDKRTIKAKFVF 238
Query: 254 VCAGLQADEMALKSGC--SLEPAIVPFRGEYLLL-NPA--KQHLVRGNIYPVPDPNFPFL 308
+ AG A + KSG S P G++L NP KQH + +Y P +
Sbjct: 239 IGAGGGALPLLQKSGIPESKGYGGFPVSGQFLRCTNPEVIKQHHAK--VYGKASVGAPPM 296
Query: 309 GV-HFTPRM-DGSVWL--GPNAVLA--FKKEGYRWRDFSVRELFSTLR---YPGFWRLGL 359
V H R+ DG L GP A + F K G S +LFS+++ +G+
Sbjct: 297 SVPHLDTRVIDGKKSLLFGPFAGFSPKFLKNG------SYLDLFSSVKPDNITPMLSVGV 350
Query: 360 K---YTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQ 404
K T+Y ++++S R+N L+++ E + D + +G R Q
Sbjct: 351 KNFPLTKYLISQLMLS--KEDRMNALREFYPEAKDEDWELITAGQRVQ 396
Score = 28.8 bits (65), Expect = 7.8
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG--HNSGVVHAG 109
DVV++G GI+ LK P I + E+ + + +N+G H+
Sbjct: 6 DVVLIGAGIMSATLGVLLKELEPNWSIEVFERLDGVAQESSNPWNNAGTGHSA 58
>gnl|CDD|236001 PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated.
Length = 415
Score = 37.7 bits (88), Expect = 0.012
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 50 SSSQSPALYDVVVVGGGIVGVATARELK 77
S YDV +VGGGIVG+ A LK
Sbjct: 11 LPSTRSLTYDVAIVGGGIVGLTLAAALK 38
Score = 34.6 bits (80), Expect = 0.12
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 2 SSSQSPTLYDMVVVGGGIVGVATARELK 29
S YD+ +VGGGIVG+ A LK
Sbjct: 11 LPSTRSLTYDVAIVGGGIVGLTLAAALK 38
>gnl|CDD|236199 PRK08244, PRK08244, hypothetical protein; Provisional.
Length = 493
Score = 37.8 bits (88), Expect = 0.012
Identities = 16/36 (44%), Positives = 26/36 (72%), Gaps = 2/36 (5%)
Query: 10 YDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKE 45
Y+++++GGG VG+ A EL L +KTC++E+ KE
Sbjct: 3 YEVIIIGGGPVGLMLASELALA--GVKTCVIERLKE 36
Score = 37.4 bits (87), Expect = 0.014
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKE 93
Y+V+++GGG VG+ A EL L +K C++E+ KE
Sbjct: 3 YEVIIIGGGPVGLMLASELAL--AGVKTCVIERLKE 36
>gnl|CDD|237093 PRK12409, PRK12409, D-amino acid dehydrogenase small subunit;
Provisional.
Length = 410
Score = 37.3 bits (87), Expect = 0.013
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 13/95 (13%)
Query: 173 RLVSAEEIKTIEP-----YCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQV 227
R V+ EE++ IEP Y G ++P+ D T + LG + R Q+V
Sbjct: 164 RAVTPEEMRAIEPTLTGEYYGG---YYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEV 220
Query: 228 ESFKENPESVTISTKQGD-----HLESSYALVCAG 257
S K + V ++ + LE +VCAG
Sbjct: 221 TSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAG 255
Score = 30.0 bits (68), Expect = 2.6
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 11/37 (29%)
Query: 12 MVVVGGGIVGVATAREL-----------KLKYPKMKT 37
+ V+G GI GV TA L + +Y M+T
Sbjct: 4 IAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAAMET 40
Score = 28.5 bits (64), Expect = 8.3
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 60 VVVVGGGIVGVATAREL 76
+ V+G GI GV TA L
Sbjct: 4 IAVIGAGITGVTTAYAL 20
>gnl|CDD|236385 PRK09126, PRK09126, hypothetical protein; Provisional.
Length = 392
Score = 37.2 bits (87), Expect = 0.013
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEK 90
D+VVVG G G++ AR L +K+ L+E+
Sbjct: 4 SDIVVVGAGPAGLSFARSLA--GSGLKVTLIER 34
Score = 34.5 bits (80), Expect = 0.099
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 25/89 (28%)
Query: 10 YDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFFSMSSSQSPALYDVVVVGGGIVG 69
D+VVVG G G++ AR L +K L+E++ +++ PA +D
Sbjct: 4 SDIVVVGAGPAGLSFARS--LAGSGLKVTLIERQ----PLAALADPA-FD---------- 46
Query: 70 VATARELKLNYPKMKICLVEKEKELGMHQ 98
RE+ L + +I + LG
Sbjct: 47 ---GREIALTHASREIL-----QRLGAWD 67
>gnl|CDD|237009 PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed.
Length = 451
Score = 37.1 bits (87), Expect = 0.017
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 60 VVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95
V ++GGGI G++ A L P I L+E LG
Sbjct: 3 VAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLG 38
Score = 32.5 bits (75), Expect = 0.50
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 13 VVVGGGIVGVATARELKLKYPKMKTCLVEKE 43
++GGGI G++ A L K P L+E
Sbjct: 4 AIIGGGITGLSAAYRLHKKGPDADITLLEAS 34
>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain.
Length = 66
Score = 33.2 bits (77), Expect = 0.022
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 62 VVGGGIVGVATARELKLNYPKMKICLVEKEKELGMH-QTGHNSGVVH 107
+VG G+ G+ A L + ++EK +G + + + G H
Sbjct: 1 IVGAGLSGLVAAYLLAKR--GKDVLVLEKRDRIGGNAYSERDPGYRH 45
>gnl|CDD|234978 PRK01747, mnmC, bifunctional tRNA
(mnm(5)s(2)U34)-methyltransferase/FAD-dependent
cmnm(5)s(2)U34 oxidoreductase; Reviewed.
Length = 662
Score = 37.1 bits (87), Expect = 0.022
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVH 107
D ++GGGI G A A L ++ L E ++ +G+ G ++
Sbjct: 262 DAAIIGGGIAGAALALALARR--GWQVTLYEADEAPAQGASGNRQGALY 308
Score = 28.7 bits (65), Expect = 9.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 11 DMVVVGGGIVGVATAREL 28
D ++GGGI G A A L
Sbjct: 262 DAAIIGGGIAGAALALAL 279
>gnl|CDD|218770 pfam05834, Lycopene_cycl, Lycopene cyclase protein. This family
consists of lycopene beta and epsilon cyclase proteins.
Carotenoids with cyclic end groups are essential
components of the photosynthetic membranes in all
plants, algae, and cyanobacteria. These lipid-soluble
compounds protect against photo-oxidation, harvest
light for photosynthesis, and dissipate excess light
energy absorbed by the antenna pigments. The
cyclisation of lycopene (psi, psi-carotene) is a key
branch point in the pathway of carotenoid biosynthesis.
Two types of cyclic end groups are found in higher
plant carotenoids: the beta and epsilon rings.
Carotenoids with two beta rings are ubiquitous, and
those with one beta and one epsilon ring are common;
however, carotenoids with two epsilon rings are rare.
Length = 374
Score = 36.5 bits (85), Expect = 0.026
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 59 DVVVVGGGIVGVATARELKLNYPKMKICLVE 89
D+V+VG G+ G+ A L+ P +++ L++
Sbjct: 1 DLVIVGAGLAGLLLALRLRQARPGLRVLLID 31
Score = 31.9 bits (73), Expect = 0.64
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 11 DMVVVGGGIVGVATARELKLKYPKMKTCLVE 41
D+V+VG G+ G+ A L+ P ++ L++
Sbjct: 1 DLVIVGAGLAGLLLALRLRQARPGLRVLLID 31
>gnl|CDD|236847 PRK11101, glpA, sn-glycerol-3-phosphate dehydrogenase subunit A;
Provisional.
Length = 546
Score = 36.5 bits (85), Expect = 0.029
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYY 112
DV+++GGG G AR+ L ++ LVE+ ++ TG N G++H+G Y
Sbjct: 8 DVIIIGGGATGAGIARDCALR--GLRCILVERH-DIATGATGRNHGLLHSGARY 58
>gnl|CDD|132263 TIGR03219, salicylate_mono, salicylate 1-monooxygenase. Members of
this protein family are salicylate 1-monooxygenase, also
called salicylate hydroxylase. This enzyme converts
salicylate to catechol, which is a common intermediate
in the degradation of a number of aromatic compounds
(phenol, toluene, benzoate, etc.). The gene for this
protein may occur in catechol degradation genes, such as
those of the meta-cleavage pathway.
Length = 414
Score = 36.0 bits (83), Expect = 0.035
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 13/74 (17%)
Query: 60 VVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKA 119
V ++GGGI GVA A L + + + L E G V AG+ + ++A
Sbjct: 3 VAIIGGGIAGVALALNL-CKHSHLNVQLFEAAPAFGE---------VGAGVSFGANAVRA 52
Query: 120 KLCVEGMNLAYEYF 133
+ G+ L Y
Sbjct: 53 ---IVGLGLGEAYT 63
Score = 31.7 bits (72), Expect = 0.81
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 14 VVGGGIVGVATARELKLKYPKMKTCLVEKEKEF 46
++GGGI GVA A L K+ + L E F
Sbjct: 5 IIGGGIAGVALALNL-CKHSHLNVQLFEAAPAF 36
>gnl|CDD|224070 COG1148, HdrA, Heterodisulfide reductase, subunit A and related
polyferredoxins [Energy production and conversion].
Length = 622
Score = 36.3 bits (84), Expect = 0.035
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 25 ARELKLKYPKMKTCLVEKEKEFFSMSSSQSPALYDVVVVGGGIVGVATAREL-KLNYPKM 83
A E +M V K ++ + + V+V+GGG+ G+ A EL + +
Sbjct: 95 ATEKAKDLLRMA---VAKARKLEPLEEIKVEVSKSVLVIGGGVAGITAALELADMGF--- 148
Query: 84 KICLVEKEKELG 95
K+ LVEKE +G
Sbjct: 149 KVYLVEKEPSIG 160
Score = 31.3 bits (71), Expect = 1.2
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Query: 11 DMVVVGGGIVGVATAREL-KLKYPKMKTCLVEKE 43
++V+GGG+ G+ A EL + + K LVEKE
Sbjct: 126 SVLVIGGGVAGITAALELADMGF---KVYLVEKE 156
>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide dehydrogenase (E3) component, and
related enzymes [Energy production and conversion].
Length = 454
Score = 36.0 bits (84), Expect = 0.036
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95
YDVVV+G G G A +K+ LVEK + LG
Sbjct: 5 YDVVVIGAGPAGYVAAIRAAQL--GLKVALVEKGERLG 40
Score = 31.8 bits (73), Expect = 0.83
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 10 YDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEF 46
YD+VV+G G G A +K LVEK +
Sbjct: 5 YDVVVIGAGPAGYVAAIRAAQL--GLKVALVEKGERL 39
>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport
[Inorganic ion transport and metabolism].
Length = 443
Score = 35.9 bits (83), Expect = 0.041
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 53 QSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95
DV ++G G G+A A LK + EK ++G
Sbjct: 4 GVATHTDVAIIGAGQSGLAAAYALKQAGVP-DFVIFEKRDDVG 45
Score = 32.4 bits (74), Expect = 0.56
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 5 QSPTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEK 42
T D+ ++G G G+A A LK + EK
Sbjct: 4 GVATHTDVAIIGAGQSGLAAAYALKQAGVP-DFVIFEK 40
>gnl|CDD|234191 TIGR03377, glycerol3P_GlpA, glycerol-3-phosphate dehydrogenase,
anaerobic, A subunit. Members of this protein family
are the A subunit, product of the glpA gene, of a
three-subunit, membrane-anchored, FAD-dependent
anaerobic glycerol-3-phosphate dehydrogenase [Energy
metabolism, Anaerobic].
Length = 516
Score = 35.8 bits (83), Expect = 0.045
Identities = 44/223 (19%), Positives = 79/223 (35%), Gaps = 44/223 (19%)
Query: 87 LVEKEKELGMHQTGHNSGVVHAGIYY---KPGT----------LK--AKLCVEGMNLAYE 131
L+E+ +L TG N G++H+G Y + LK A+ CVE
Sbjct: 13 LLEQ-GDLAHGTTGRNHGLLHSGARYAVTDQESARECIEENRILKRIARHCVE------- 64
Query: 132 YFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKG-- 189
G L + L E + + + + E +EP
Sbjct: 65 ----------DTGGLFITLPEDDLEFQKQFLAACREAGIPAEEIDPAEALRLEPNLNPDL 114
Query: 190 VKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVT------ISTKQ 243
+ A+ P+ + + LV + + E G I +V VT T +
Sbjct: 115 IGAVKVPDGTVDPFRLVAANVLDA-QEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGE 173
Query: 244 GDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLN 286
+ +E+ + AG+ A +A +G + + P +G L++N
Sbjct: 174 EERIEAQVVINAAGIWAGRIAEYAGLDIR--MFPAKGALLIMN 214
>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain. This family
includes members that bind FAD. This family includes
the flavoprotein subunits from succinate and fumarate
dehydrogenase, aspartate oxidase and the alpha subunit
of adenylylsulphate reductase.
Length = 401
Score = 35.4 bits (82), Expect = 0.059
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMH 97
DVVV+G G+ G+A A E +K+ +VEK + G
Sbjct: 1 DVVVIGSGLAGLAAALEAA--EAGLKVAVVEKGQPFGGA 37
Score = 31.1 bits (71), Expect = 1.4
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 11 DMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFFSMS--SSQSPALYDVVVVGGGI 67
D+VV+G G+ G+A A E +K +VEK + F + SS G GI
Sbjct: 1 DVVVIGSGLAGLAAALE--AAEAGLKVAVVEKGQPFGGATAWSSGGIDALGTPPQGAGI 57
>gnl|CDD|181057 PRK07608, PRK07608, ubiquinone biosynthesis hydroxylase family
protein; Provisional.
Length = 388
Score = 35.3 bits (82), Expect = 0.063
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVE 89
+DVVVVGGG+VG + A L L +++ L+
Sbjct: 6 FDVVVVGGGLVGASLA--LALAQSGLRVALLA 35
Score = 33.8 bits (78), Expect = 0.16
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 10 YDMVVVGGGIVGVATARELKLKYPKMKTCLVE 41
+D+VVVGGG+VG + A L L ++ L+
Sbjct: 6 FDVVVVGGGLVGASLA--LALAQSGLRVALLA 35
>gnl|CDD|183516 PRK12416, PRK12416, protoporphyrinogen oxidase; Provisional.
Length = 463
Score = 35.2 bits (81), Expect = 0.063
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 60 VVVVGGGIVGVAT----ARELKLNYPKMKICLVEKEKELG 95
VVV+GGGI G++T + K + + LVEKE+ LG
Sbjct: 4 VVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLG 43
>gnl|CDD|181346 PRK08275, PRK08275, putative oxidoreductase; Provisional.
Length = 554
Score = 35.0 bits (81), Expect = 0.080
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEK 90
D++V+GGG G A + K P +++ L+EK
Sbjct: 10 TDILVIGGGTAGPMAAIKAKERNPALRVLLLEK 42
Score = 34.3 bits (79), Expect = 0.13
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 10 YDMVVVGGGIVGVATARELKLKYPKMKTCLVEK 42
D++V+GGG G A + K + P ++ L+EK
Sbjct: 10 TDILVIGGGTAGPMAAIKAKERNPALRVLLLEK 42
>gnl|CDD|181199 PRK08020, ubiF, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Reviewed.
Length = 391
Score = 35.0 bits (81), Expect = 0.087
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 58 YDVVVVGGGIVGVATA 73
D+ +VGGG+VG A A
Sbjct: 6 TDIAIVGGGMVGAALA 21
Score = 32.6 bits (75), Expect = 0.42
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 5 QSPTLYDMVVVGGGIVGVATA 25
+ D+ +VGGG+VG A A
Sbjct: 1 MTNQPTDIAIVGGGMVGAALA 21
>gnl|CDD|225307 COG2509, COG2509, Uncharacterized FAD-dependent dehydrogenases
[General function prediction only].
Length = 486
Score = 34.6 bits (80), Expect = 0.10
Identities = 52/253 (20%), Positives = 86/253 (33%), Gaps = 55/253 (21%)
Query: 55 PALYDVVVVGGGIVGVATAREL---KLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIY 111
A DVV+VG G G+ A EL P +KI +V+ ++ + +
Sbjct: 16 NAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDIEQRLCPKDEKKLEKCPK 75
Query: 112 YKP----------GTLKAKLCVEGMNLAY-----EYFDKRNIPYKKC---GKLIVALNEQ 153
P G + L +R + L+ N Q
Sbjct: 76 CDPCPIVIGFGGAGLFSDGI------LNLRPIRGGDVHERTKDTDEFWELVNLVDESNVQ 129
Query: 154 L-EP----LHDLYERSIQNNVKDVRLVSA---EEIKTIEPYCKGVKAIHSPNTGIVDWGL 205
P DL E+ +KD+ +A EEI + + G
Sbjct: 130 FGAPGAGTFSDLTEQ-----IKDIEFRAAGAGEEI---------LPIYQ-RHIGTDILPK 174
Query: 206 VTRVMGEEFCELGGEIRLNQQVESF-KENPESVTISTKQGDHLESSYALVCAGLQA---- 260
V + + E LGGEIR N +VE E+ E + + +G+ +E+ Y ++ G
Sbjct: 175 VVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSGRDWF 234
Query: 261 DEMALKSGCSLEP 273
+ + K G +
Sbjct: 235 EMLHKKLGVKMRA 247
>gnl|CDD|237365 PRK13369, PRK13369, glycerol-3-phosphate dehydrogenase;
Provisional.
Length = 502
Score = 34.6 bits (80), Expect = 0.11
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 13/63 (20%)
Query: 55 PALYDVVVVGGGIVGVATARE-----LKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAG 109
P YD+ V+GGGI G AR+ L K+ L EK+ +L + + +VH G
Sbjct: 4 PETYDLFVIGGGINGAGIARDAAGRGL-------KVLLCEKD-DLAQGTSSRSGKLVHGG 55
Query: 110 IYY 112
+ Y
Sbjct: 56 LRY 58
Score = 31.5 bits (72), Expect = 0.93
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 7 PTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFFSMSSSQSPAL 57
P YD+ V+GGGI G AR+ + +K L EK+ + +SS+S L
Sbjct: 4 PETYDLFVIGGGINGAGIARDAAGR--GLKVLLCEKD-DLAQGTSSRSGKL 51
>gnl|CDD|180319 PRK05945, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 575
Score = 34.3 bits (79), Expect = 0.13
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGV 105
+DVV+VGGG+ G A E+K P + + +V K + H G+
Sbjct: 4 HDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGI 51
Score = 32.4 bits (74), Expect = 0.58
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 10 YDMVVVGGGIVGVATARELKLKYPKMKTCLVEK 42
+D+V+VGGG+ G A E+K P + +V K
Sbjct: 4 HDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAK 36
>gnl|CDD|107205 cd01562, Thr-dehyd, Threonine dehydratase: The first step in amino
acid degradation is the removal of nitrogen. Although
the nitrogen atoms of most amino acids are transferred
to alpha-ketoglutarate before removal, the alpha-amino
group of threonine can be directly converted into NH4+.
The direct deamination is catalyzed by threonine
dehydratase, in which pyridoxal phosphate (PLP) is the
prosthetic group. Threonine dehydratase is widely
distributed in all three major phylogenetic divisions.
Length = 304
Score = 34.0 bits (79), Expect = 0.13
Identities = 22/49 (44%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 53 QSPALYDVVV-VGGG--IVGVATARELKLNYPKMKICLVEKEKELGMHQ 98
Q P L V V VGGG I G+ATA +K P K+ VE E M Q
Sbjct: 162 QVPDLDAVFVPVGGGGLIAGIATA--VKALSPNTKVIGVEPEGAPAMAQ 208
Score = 30.1 bits (69), Expect = 2.5
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 5 QSPTLYDMVVV----GGGIVGVATARELKLKYPKMKTCLVEKEKEFFSMSSS 52
Q P L D V V GG I G+ATA +K P K VE E +M+ S
Sbjct: 162 QVPDL-DAVFVPVGGGGLIAGIATA--VKALSPNTKVIGVEPEG-APAMAQS 209
>gnl|CDD|236010 PRK07395, PRK07395, L-aspartate oxidase; Provisional.
Length = 553
Score = 34.3 bits (79), Expect = 0.16
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 49 MSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92
+SS+ P+ +DV+VVG G G+ A L + ++ L+ K+
Sbjct: 1 LSSTILPSQFDVLVVGSGAAGLYAALCLPSHL---RVGLITKDT 41
Score = 32.3 bits (74), Expect = 0.55
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 1 MSSSQSPTLYDMVVVGGGIVGVATARELKLKYPK-MKTCLVEKEKEFFSMSSSQ 53
+SS+ P+ +D++VVG G G+ A L P ++ L+ K+ S+S
Sbjct: 1 LSSTILPSQFDVLVVGSGAAGLYAA----LCLPSHLRVGLITKDT--LKTSASD 48
>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases
[General function prediction only].
Length = 415
Score = 33.7 bits (77), Expect = 0.18
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 60 VVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92
+V+VGGG G++ A L+ +I L+ +E
Sbjct: 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREP 33
Score = 30.3 bits (68), Expect = 2.3
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95
DVVVVG G +G+ A K+ L+E LG
Sbjct: 138 DVVVVGAGPIGLEAAEAAAKR--GKKVTLIEAADRLG 172
>gnl|CDD|235879 PRK06854, PRK06854, adenylylsulfate reductase subunit alpha;
Validated.
Length = 608
Score = 34.1 bits (79), Expect = 0.18
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEK 90
D++++GGG+ G A E K P +K+ +VEK
Sbjct: 13 DILIIGGGMAGCGAAFEAKEWAPDLKVLIVEK 44
Score = 29.1 bits (66), Expect = 5.9
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 11 DMVVVGGGIVGVATARELKLKYPKMKTCLVEK 42
D++++GGG+ G A E K P +K +VEK
Sbjct: 13 DILIIGGGMAGCGAAFEAKEWAPDLKVLIVEK 44
>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional.
Length = 561
Score = 33.8 bits (77), Expect = 0.20
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 50 SSSQSPAL-YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE 91
+ P + YD++V+GGG G+A AR N K K+ LVEK+
Sbjct: 40 HLKKKPRMVYDLIVIGGGSGGMAAARRAARN--KAKVALVEKD 80
Score = 31.1 bits (70), Expect = 1.4
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 2 SSSQSPTL-YDMVVVGGGIVGVATARELKLKYPKMKTCLVEKE 43
+ P + YD++V+GGG G+A AR + K K LVEK+
Sbjct: 40 HLKKKPRMVYDLIVIGGGSGGMAAAR--RAARNKAKVALVEKD 80
>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.
Length = 462
Score = 33.6 bits (78), Expect = 0.21
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 6 SPTLYDMVVVGGGIVGVATA-RELKLKYPKMKTCLVEKEK 44
YD++V+G G G A R +L +K +VEKEK
Sbjct: 1 FAFEYDVIVIGAGPGGYVAAIRAAQL---GLKVAIVEKEK 37
Score = 32.8 bits (76), Expect = 0.36
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 5/39 (12%)
Query: 58 YDVVVVGGGIVGVATA-RELKLNYPKMKICLVEKEKELG 95
YDV+V+G G G A R +L +K+ +VEKEK LG
Sbjct: 5 YDVIVIGAGPGGYVAAIRAAQL---GLKVAIVEKEK-LG 39
>gnl|CDD|235584 PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated.
Length = 395
Score = 33.7 bits (78), Expect = 0.21
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 56 ALYDVVVVGGGIVGVATAREL-KLNYPKMKICLVE 89
+ DV++VGGG+ G A L +L++ + + L+E
Sbjct: 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIE 36
>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy
production and conversion].
Length = 405
Score = 33.8 bits (78), Expect = 0.21
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 60 VVVVGGGIVGVATARELKLNYPKMKICLVEK 90
+V++GGG G++ A+ L P ++I LV++
Sbjct: 6 IVILGGGFGGLSAAKRLARKLPDVEITLVDR 36
Score = 29.9 bits (68), Expect = 3.3
Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 5/49 (10%)
Query: 12 MVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFFSMSSSQSPALYDV 60
+V++GGG G++ A+ L K P ++ LV++ +++ +P LY+V
Sbjct: 6 IVILGGGFGGLSAAKRLARKLPDVEITLVDR-RDYHLF----TPLLYEV 49
Score = 29.9 bits (68), Expect = 3.4
Identities = 27/108 (25%), Positives = 41/108 (37%), Gaps = 37/108 (34%)
Query: 10 YDMVVVG-G------GIVGVA----------TARELKLKYPKMKTCLVEKEKEFFSMSSS 52
YD +VV G GI G A A L+ + + +E
Sbjct: 100 YDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRH---LLEAFEKASQE------E 150
Query: 53 QSPALYDVVVVGGGIVGVATAREL-----------KLNYPKMKICLVE 89
AL +V+VGGG GV A EL +++ ++++ LVE
Sbjct: 151 DDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVE 198
>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase;
Provisional.
Length = 461
Score = 33.6 bits (78), Expect = 0.23
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 214 FCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA--DEMAL 265
+ G IR N++VE + + V + K G +++ L G D + L
Sbjct: 226 LRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTDGLNL 279
>gnl|CDD|181552 PRK08773, PRK08773,
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Validated.
Length = 392
Score = 33.7 bits (77), Expect = 0.23
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEK 90
D V+VGGG+VG A A L L + + LVE
Sbjct: 8 DAVIVGGGVVGAACA--LALADAGLSVALVEG 37
Score = 29.8 bits (67), Expect = 3.5
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 11 DMVVVGGGIVGVATARELKLKYPKMKTCLVEK 42
D V+VGGG+VG A A L L + LVE
Sbjct: 8 DAVIVGGGVVGAACA--LALADAGLSVALVEG 37
>gnl|CDD|132407 TIGR03364, HpnW_proposed, FAD dependent oxidoreductase TIGR03364.
This clade of FAD dependent oxidoreductases (members
of the pfam01266 family) is syntenically associated
with a family of proposed phosphonatase-like enzymes
(TIGR03351) and is also found (less frequently) in
association with phosphonate transporter components. A
likely role for this enzyme involves the oxidative
deamination of an aminophosphonate differring slightly
from 2-aminoethylphosphonate, possibly
1-hydroxy-2-aminoethylphosphonate (see the comments for
TIGR03351). Many members of the larger FAD dependent
oxidoreductase family act as amino acid oxidative
deaminases.
Length = 365
Score = 33.4 bits (77), Expect = 0.23
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 58 YDVVVVGGGIVGVATARE 75
YD+++VG GI+G+A A
Sbjct: 1 YDLIIVGAGILGLAHAYA 18
Score = 31.9 bits (73), Expect = 0.75
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 10 YDMVVVGGGIVGVATARE 27
YD+++VG GI+G+A A
Sbjct: 1 YDLIIVGAGILGLAHAYA 18
>gnl|CDD|178267 PLN02661, PLN02661, Putative thiazole synthesis.
Length = 357
Score = 33.3 bits (76), Expect = 0.23
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 31 KYPKMKTCLVEKEKEFFSMSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEK 90
K+ +K +V +E M+ + A DVV+VG G G++ A EL N P +K+ ++E+
Sbjct: 66 KFAPIKESIVSREMTRRYMTDMITYADTDVVIVGAGSAGLSCAYELSKN-PNVKVAIIEQ 124
Score = 29.0 bits (65), Expect = 6.0
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 11 DMVVVGGGIVGVATARELKLKYPKMKTCLVEK 42
D+V+VG G G++ A EL K P +K ++E+
Sbjct: 94 DVVIVGAGSAGLSCAYELS-KNPNVKVAIIEQ 124
>gnl|CDD|181564 PRK08849, PRK08849,
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Provisional.
Length = 384
Score = 33.2 bits (76), Expect = 0.31
Identities = 12/16 (75%), Positives = 14/16 (87%)
Query: 58 YDVVVVGGGIVGVATA 73
YD+ VVGGG+VG ATA
Sbjct: 4 YDIAVVGGGMVGAATA 19
Score = 32.1 bits (73), Expect = 0.61
Identities = 12/16 (75%), Positives = 14/16 (87%)
Query: 10 YDMVVVGGGIVGVATA 25
YD+ VVGGG+VG ATA
Sbjct: 4 YDIAVVGGGMVGAATA 19
>gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family. This model
represents a subfamily which includes geranylgeranyl
reductases involved in chlorophyll and
bacteriochlorophyll biosynthesis as well as other
related enzymes which may also act on geranylgeranyl
groups or related substrates [Biosynthesis of cofactors,
prosthetic groups, and carriers, Chlorophyll and
bacteriochlorphyll].
Length = 295
Score = 32.7 bits (75), Expect = 0.35
Identities = 39/207 (18%), Positives = 61/207 (29%), Gaps = 72/207 (34%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTL 117
YDVVVVG G G + A L G +
Sbjct: 1 YDVVVVGAGPAGASAAYRLA--------------------DKGLRVLL------------ 28
Query: 118 KAKLCVEGMNLAYEYFDKRNIP-YKKCGKLIV-ALNEQLEPLHDLYERSIQNNVKDVRLV 175
+K++ P YK CG + E+L+ I N V+ R
Sbjct: 29 ---------------LEKKSFPRYKPCGGALSPRALEELDLPG----ELIVNLVRGARFF 69
Query: 176 SAEEIKTIEPYCKGVKAIHSPNTGIV------DWGLVTRVMGEEFCELGGEIRLNQQVES 229
S P V+ V D L R E G E+RL +V
Sbjct: 70 S--------PNGDSVEIPIETELAYVIDRDAFDEQLAERAQ-----EAGAELRLGTRVLD 116
Query: 230 FKENPESVTISTKQGDHLESSYALVCA 256
+ + + V + + + ++ ++ A
Sbjct: 117 VEIHDDRVVVIVRGSEGTVTAKIVIGA 143
Score = 31.5 bits (72), Expect = 0.84
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 10 YDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKE 45
YD+VVVG G G + A L K ++ L+EK+
Sbjct: 1 YDVVVVGAGPAGASAAYRLADK--GLRVLLLEKKSF 34
>gnl|CDD|145231 pfam01946, Thi4, Thi4 family. This family includes a putative
thiamine biosynthetic enzyme.
Length = 229
Score = 32.4 bits (74), Expect = 0.36
Identities = 35/150 (23%), Positives = 59/150 (39%), Gaps = 27/150 (18%)
Query: 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLK 118
DVV+VG G G+ A L +K+ ++E+ G G + G L
Sbjct: 19 DVVIVGAGPSGLTAAYYLAKK--GLKVAIIERSLSPG-------------GGAWGGGMLF 63
Query: 119 AKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAE 178
+ + V A E+ D+ I Y+ G +V + + E L +++Q VK S E
Sbjct: 64 SAMVVR--KPADEFLDEFGIRYEDEGDYVV-VADAAEFTSTLASKALQPGVKIFNATSVE 120
Query: 179 EIKTIEPYCKGVKAIHSPNTGIVDWGLVTR 208
++ + GV + +W LV
Sbjct: 121 DLIIRDNRVAGV---------VTNWTLVEM 141
>gnl|CDD|226906 COG4529, COG4529, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 474
Score = 32.8 bits (75), Expect = 0.41
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 58 YDVVVVGGGIVGVATAREL-KLNYPKMKICLVEKEKELG 95
+ V ++GGG G+ A L K P I + E G
Sbjct: 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFG 40
>gnl|CDD|181262 PRK08163, PRK08163, salicylate hydroxylase; Provisional.
Length = 396
Score = 32.7 bits (75), Expect = 0.42
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 220 EIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGL 258
E R + V +++ + VT+ +QG+ + C G+
Sbjct: 126 EFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGV 164
Score = 28.5 bits (64), Expect = 7.6
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 50 SSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95
+ +P L +VGGGI G+A A L L +K+ L+E+ E+G
Sbjct: 1 MTKVTPVL----IVGGGIGGLAAA--LALARQGIKVKLLEQAAEIG 40
>gnl|CDD|215257 PLN02464, PLN02464, glycerol-3-phosphate dehydrogenase.
Length = 627
Score = 32.8 bits (75), Expect = 0.42
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 14/92 (15%)
Query: 2 SSSQSPTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFFSMSSSQSPALYDVV 61
+++ P D++VVGGG G A L ++ LVE+E +F S +SS+S L
Sbjct: 66 ATAAEP--LDVLVVGGGATGAGVA--LDAATRGLRVGLVERE-DFSSGTSSRSTKL---- 116
Query: 62 VVGGGIVGVATARELKLNYPKMKI---CLVEK 90
+ GG+ + A +L+Y ++K+ L E+
Sbjct: 117 -IHGGVRYLEKA-VFQLDYGQLKLVFHALEER 146
Score = 30.5 bits (69), Expect = 2.3
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 50 SSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAG 109
+++ P DV+VVGGG G A L +++ LVE+E + + ++ ++H G
Sbjct: 66 ATAAEP--LDVLVVGGGATGAGVA--LDAATRGLRVGLVERE-DFSSGTSSRSTKLIHGG 120
Query: 110 IYYKPGTLKAKLCVEGMNLAYEYFDKR 136
+ Y +L + L + ++R
Sbjct: 121 VRYL-EKAVFQLDYGQLKLVFHALEER 146
>gnl|CDD|236102 PRK07804, PRK07804, L-aspartate oxidase; Provisional.
Length = 541
Score = 32.6 bits (75), Expect = 0.43
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 59 DVVVVGGGIVGVATARELKL 78
DVVVVG G+ G+ A +
Sbjct: 18 DVVVVGSGVAGLTAALAARR 37
Score = 29.9 bits (68), Expect = 3.0
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 11 DMVVVGGGIVGVATARELKL 30
D+VVVG G+ G+ A +
Sbjct: 18 DVVVVGSGVAGLTAALAARR 37
>gnl|CDD|215314 PLN02576, PLN02576, protoporphyrinogen oxidase.
Length = 496
Score = 32.7 bits (75), Expect = 0.44
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 58 YDVVVVGGGIVGVATARELKLN 79
DV VVG G+ G+A A L
Sbjct: 13 KDVAVVGAGVSGLAAAYALASK 34
Score = 30.8 bits (70), Expect = 1.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 10 YDMVVVGGGIVGVATARELKLK 31
D+ VVG G+ G+A A L K
Sbjct: 13 KDVAVVGAGVSGLAAAYALASK 34
>gnl|CDD|221798 pfam12831, FAD_oxidored, FAD dependent oxidoreductase. This
family of proteins contains FAD dependent
oxidoreductases and related proteins.
Length = 415
Score = 32.5 bits (75), Expect = 0.44
Identities = 12/15 (80%), Positives = 12/15 (80%)
Query: 59 DVVVVGGGIVGVATA 73
DVVVVGGG GVA A
Sbjct: 1 DVVVVGGGPAGVAAA 15
Score = 29.1 bits (66), Expect = 5.2
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 10/36 (27%)
Query: 11 DMVVVGGGIVGVATA----RELKLKYPKMKTCLVEK 42
D+VVVGGG GVA A R K LVE+
Sbjct: 1 DVVVVGGGPAGVAAAIAAARL------GAKVLLVER 30
>gnl|CDD|132372 TIGR03329, Phn_aa_oxid, putative aminophosphonate oxidoreductase.
This clade of sequences are members of the pfam01266
family of FAD-dependent oxidoreductases. Characterized
proteins within this family include glycerol-3-phosphate
dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit
(1.5.3.1) and a number of deaminating amino acid
oxidases (1.4.-.-). These genes have been consistently
observed in a genomic context including genes for the
import and catabolism of 2-aminoethylphosphonate (AEP).
If the substrate of this oxidoreductase is AEP itself,
then it is probably acting in the manner of a
deaminating oxidase, resulting in the same product
(phosphonoacetaldehyde) as the transaminase PhnW
(TIGR02326), but releasing ammonia instead of coupling
to pyruvate:alanine. Alternatively, it is reasonable to
suppose that the various ABC cassette transporters which
are also associated with these loci allow the import of
phosphonates closely related to AEP which may not be
substrates for PhnW.
Length = 460
Score = 32.8 bits (75), Expect = 0.45
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSG 104
DV +VGGG G+ TA +K P + + ++E + G +G N G
Sbjct: 26 DVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL-CGAGASGRNGG 70
>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase. This
model describes dihydrolipoamide dehydrogenase, a
flavoprotein that acts in a number of ways. It is the
E3 component of dehydrogenase complexes for pyruvate,
2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can
also serve as the L protein of the glycine cleavage
system. This family includes a few members known to
have distinct functions (ferric leghemoglobin reductase
and NADH:ferredoxin oxidoreductase) but that may be
predicted by homology to act as dihydrolipoamide
dehydrogenase as well. The motif GGXCXXXGCXP near the
N-terminus contains a redox-active disulfide.
Length = 460
Score = 32.6 bits (75), Expect = 0.46
Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
Query: 58 YDVVVVGGGIVG-VATARELKLNYPKMKICLVEKEK 92
YDV+V+GGG G VA R +L +K+ LVEKE
Sbjct: 2 YDVIVIGGGPGGYVAAIRAAQL---GLKVALVEKEY 34
Score = 32.2 bits (74), Expect = 0.65
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 10 YDMVVVGGGIVG-VATARELKLKYPKMKTCLVEKEK 44
YD++V+GGG G VA R +L +K LVEKE
Sbjct: 2 YDVIVIGGGPGGYVAAIRAAQL---GLKVALVEKEY 34
Score = 31.5 bits (72), Expect = 0.94
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDH--LESSYALVCAGLQAD 261
V++V+ + + G +I N +V + ++N + VT K G+ L LV G + +
Sbjct: 213 VSKVLQKALKKKGVKILTNTKVTAVEKNDDQVTYENKGGETETLTGEKVLVAVGRKPN 270
>gnl|CDD|235689 PRK06069, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 577
Score = 32.7 bits (75), Expect = 0.48
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 58 YDVVVVGGGIVGVATARELKLNY-PKMKICLVEK 90
YDVV+VG G+ G+ A K+ + +V K
Sbjct: 6 YDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSK 39
Score = 30.0 bits (68), Expect = 2.9
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 10 YDMVVVGGGIVGVATARELKLKY-PKMKTCLVEK 42
YD+V+VG G+ G+ A + K+ +V K
Sbjct: 6 YDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSK 39
>gnl|CDD|233672 TIGR01989, COQ6, ubiquinone biosynthesis monooxygenase COQ6.
This model represents the monooxygenase responsible for
the 4-hydroxylateion of the phenol ring in the aerobic
biosynthesis of ubiquinone.
Length = 437
Score = 32.4 bits (74), Expect = 0.48
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 58 YDVVVVGGGIVGVATARELKLN 79
+DVV+VGGG VG+A A L N
Sbjct: 1 FDVVIVGGGPVGLALAAALGNN 22
Score = 29.7 bits (67), Expect = 3.4
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 10 YDMVVVGGGIVGVATARELK 29
+D+V+VGGG VG+A A L
Sbjct: 1 FDVVIVGGGPVGLALAAALG 20
>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 487
Score = 32.4 bits (74), Expect = 0.49
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 58 YDVVVVGGGIVGVATAREL-KLNYPKMKICLVEKEKELG 95
YDVVV+G G+ G+A A L + K+ ++EK +G
Sbjct: 4 YDVVVIGAGLNGLAAAALLARAGL---KVTVLEKNDRVG 39
>gnl|CDD|179979 PRK05257, PRK05257, malate:quinone oxidoreductase; Validated.
Length = 494
Score = 32.4 bits (75), Expect = 0.53
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 58 YDVVVVGGGIVGVATA---RELKLNYPKMKICLVEKEKELGMHQTG--HNSGVVHAG 109
DVV++GGGI+ +EL+ P+ I + E+ + + + +N+G H+
Sbjct: 6 TDVVLIGGGIMSATLGTLLKELE---PEWSITMFERLDGVALESSNGWNNAGTGHSA 59
>gnl|CDD|236541 PRK09496, trkA, potassium transporter peripheral membrane
component; Reviewed.
Length = 453
Score = 32.4 bits (75), Expect = 0.54
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 60 VVVVGGGIVGVATARELKLNYPKMKICLVEKEKE 93
V++VGGG +G A+ L+ + L+E++ E
Sbjct: 234 VMIVGGGNIGYYLAKLLE--KEGYSVKLIERDPE 265
Score = 28.5 bits (65), Expect = 8.2
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 13 VVVGGGIVGVATARELKLKYPKMKTCLVEKEKE 45
++VGGG +G A+ L+ L+E++ E
Sbjct: 235 MIVGGGNIGYYLAKL--LEKEGYSVKLIERDPE 265
>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.
Length = 460
Score = 32.1 bits (74), Expect = 0.64
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95
YDV+V+G G G AR K+ L+EK LG
Sbjct: 4 YDVIVIGAGPAGYVAARRAAK--LGKKVALIEKG-PLG 38
>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational
modification, protein turnover, chaperones].
Length = 305
Score = 31.9 bits (73), Expect = 0.67
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95
YDV+++GGG G+ A +K+ L+ + E G
Sbjct: 4 YDVIIIGGGPAGLTAAIYAARA--GLKVVLILEGGEPG 39
Score = 31.1 bits (71), Expect = 1.1
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 8 TLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEF 46
+YD++++GGG G+ A +K L+ + E
Sbjct: 2 KIYDVIIIGGGPAGLTAAIYAARA--GLKVVLILEGGEP 38
>gnl|CDD|233669 TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hydroxylase.
This model represents the FAD-dependent monoxygenase
responsible for the second hydroxylation step in the
aerobic ubiquinone bioynthetic pathway. The scope of
this model is limited to the proteobacteria. This
family is closely related to the UbiF hydroxylase which
catalyzes the final hydroxylation step. The enzyme has
also been named VisB due to a mutant VISible light
sensitive phenotype [Biosynthesis of cofactors,
prosthetic groups, and carriers, Menaquinone and
ubiquinone].
Length = 382
Score = 31.9 bits (73), Expect = 0.68
Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEK 90
DV++VGGG+VG++ A L K+KI L+E
Sbjct: 1 DVIIVGGGLVGLSLALAL-SRLGKIKIALIEA 31
>gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated.
Length = 472
Score = 31.8 bits (73), Expect = 0.71
Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
Query: 10 YDMVVVGGGIVG-VATARELKLKYPKMKTCLVEKEK 44
YD+V++GGG G VA R +L +KT LVEK K
Sbjct: 5 YDLVIIGGGPGGYVAAIRAGQL---GLKTALVEKGK 37
Score = 30.3 bits (69), Expect = 2.3
Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 5/39 (12%)
Query: 58 YDVVVVGGGIVG-VATARELKLNYPKMKICLVEKEKELG 95
YD+V++GGG G VA R +L +K LVEK K LG
Sbjct: 5 YDLVIIGGGPGGYVAAIRAGQL---GLKTALVEKGK-LG 39
>gnl|CDD|180419 PRK06134, PRK06134, putative FAD-binding dehydrogenase; Reviewed.
Length = 581
Score = 32.0 bits (73), Expect = 0.73
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 48 SMSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95
S ++ DV+V+G G G++ A + + +K+ +VEK+ G
Sbjct: 3 SAAAYPPDLECDVLVIGSGAAGLSAA--VTAAWHGLKVIVVEKDPVFG 48
>gnl|CDD|236139 PRK08013, PRK08013, oxidoreductase; Provisional.
Length = 400
Score = 31.6 bits (72), Expect = 0.86
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 58 YDVVVVGGGIVGVATA 73
DVV+ GGG+VG+A A
Sbjct: 4 VDVVIAGGGMVGLAVA 19
Score = 29.2 bits (66), Expect = 4.5
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 10 YDMVVVGGGIVGVATA 25
D+V+ GGG+VG+A A
Sbjct: 4 VDVVIAGGGMVGLAVA 19
>gnl|CDD|237027 PRK12266, glpD, glycerol-3-phosphate dehydrogenase; Reviewed.
Length = 508
Score = 31.7 bits (73), Expect = 0.89
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 52 SQSPALYDVVVVGGGIVGVATAR 74
YD++V+GGGI G AR
Sbjct: 1 MTMMETYDLLVIGGGINGAGIAR 23
Score = 30.9 bits (71), Expect = 1.4
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 4 SQSPTLYDMVVVGGGIVGVATAR 26
YD++V+GGGI G AR
Sbjct: 1 MTMMETYDLLVIGGGINGAGIAR 23
>gnl|CDD|215420 PLN02785, PLN02785, Protein HOTHEAD.
Length = 587
Score = 31.7 bits (72), Expect = 0.92
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 40 VEKEKEFFSMSSSQSPAL----YDVVVVGGGIVGVATARELKLNYPKMKICLVEK 90
++K F S SSS S + YD +VVGGG G A L N+ + L+E+
Sbjct: 34 IDKASSFSSSSSSSSSSGGDSAYDYIVVGGGTAGCPLAATLSQNF---SVLLLER 85
Score = 29.8 bits (67), Expect = 4.0
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 2 SSSQSPTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEK 42
SSS + YD +VVGGG G A L + L+E+
Sbjct: 48 SSSGGDSAYDYIVVGGGTAGCPLAATLSQNF---SVLLLER 85
>gnl|CDD|236158 PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional.
Length = 547
Score = 31.8 bits (73), Expect = 1.00
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 51 SSQSPALYDVVVVGGGIVGVATAREL 76
+ PA + VVVVG G VG+A A +L
Sbjct: 17 DADDPARHPVVVVGAGPVGLALAIDL 42
>gnl|CDD|130850 TIGR01790, carotene-cycl, lycopene cyclase family protein. This
family includes lycopene beta and epsilion cyclases
(which form beta and delta carotene, respectively) from
bacteria and plants as well as the plant
capsanthin/capsorubin and neoxanthin cyclases which
appear to have evolved from the plant lycopene
cyclases. The plant lycopene epsilon cyclases also
transform neurosporene to alpha zeacarotene.
Length = 388
Score = 31.2 bits (71), Expect = 1.1
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 59 DVVVVGGGIVGVATARELKLNYPKMKICLVE 89
D+ V+GGG G+A A L+L P +++ L+E
Sbjct: 1 DLAVIGGGPAGLAIA--LELARPGLRVQLIE 29
>gnl|CDD|213540 TIGR00562, proto_IX_ox, protoporphyrinogen oxidase. This enzyme
oxidizes protoporphyrinogen IX to protoporphyrin IX, a
precursor of heme and chlorophyll. Bacillus subtilis
HemY also has coproporphyrinogen III to coproporphyrin
III oxidase activity in a heterologous expression
system, although the role for this activity in vivo is
unclear. This protein is a flavoprotein and has a
beta-alpha-beta dinucleotide binding motif near the
amino end [Biosynthesis of cofactors, prosthetic
groups, and carriers, Heme, porphyrin, and cobalamin].
Length = 462
Score = 31.3 bits (71), Expect = 1.1
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 59 DVVVVGGGIVGVATARELKLNYPKM--KICLVEKEKELG 95
VV++GGGI G+ A L+ P++ ++ LVE +G
Sbjct: 4 HVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVG 42
Score = 29.0 bits (65), Expect = 6.4
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 11 DMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKE 45
+V++GGGI G+ A L+ + P++ L E
Sbjct: 4 HVVIIGGGISGLCAAYYLEKEIPELPVELTLVEAS 38
>gnl|CDD|223981 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase,
flavoprotein subunit [Energy production and
conversion].
Length = 562
Score = 31.6 bits (72), Expect = 1.1
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 21/78 (26%)
Query: 10 YDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFFSMSSS----------------- 52
+D+VV+GGG G+ A ++ +K L+ K + +
Sbjct: 7 FDVVVIGGGGAGLRAA--IEAAEAGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEG 64
Query: 53 QSPAL--YDVVVVGGGIV 68
SP L YD V G G+
Sbjct: 65 DSPELHFYDTVKGGDGLG 82
Score = 31.2 bits (71), Expect = 1.2
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGV 105
+DVVV+GGG G+ A E +K+ L+ K H G+
Sbjct: 7 FDVVVIGGGGAGLRAAIEAA--EAGLKVALLSKAPPKRGHTVAAQGGI 52
>gnl|CDD|183983 PRK13339, PRK13339, malate:quinone oxidoreductase; Reviewed.
Length = 497
Score = 31.2 bits (71), Expect = 1.2
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 49 MSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG--HNSGVV 106
M+ S+S DVV+VG GI+ LK P I +VE+ + + +N+G
Sbjct: 1 MAKSESK---DVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESSNEWNNAGTG 57
Query: 107 HAGI 110
HA +
Sbjct: 58 HAAL 61
>gnl|CDD|132187 TIGR03143, AhpF_homolog, putative alkyl hydroperoxide reductase F
subunit. This family of thioredoxin reductase homologs
is found adjacent to alkylhydroperoxide reductase C
subunit predominantly in cases where there is only one
C subunit in the genome and that genome is lacking the
F subunit partner (also a thioredcxin reductase
homolog) that is usually found (TIGR03140).
Length = 555
Score = 31.3 bits (71), Expect = 1.4
Identities = 10/36 (27%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 9 LYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEK 44
+YD++++GGG G++ + K+ T ++EK+
Sbjct: 4 IYDLIIIGGGPAGLSAG--IYAGRAKLDTLIIEKDD 37
Score = 29.0 bits (65), Expect = 6.5
Identities = 9/36 (25%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92
+YD++++GGG G++ + K+ ++EK+
Sbjct: 4 IYDLIIIGGGPAGLSAG--IYAGRAKLDTLIIEKDD 37
>gnl|CDD|224992 COG2081, COG2081, Predicted flavoproteins [General function
prediction only].
Length = 408
Score = 31.0 bits (71), Expect = 1.4
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 216 ELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAG 257
LG IR +V S +++ + T G+ ++ ++ G
Sbjct: 123 ALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATG 164
>gnl|CDD|130849 TIGR01789, lycopene_cycl, lycopene cyclase. This model
represents a family of bacterial lycopene cyclases
catalyzing the transformation of lycopene to carotene.
These enzymes are found in a limited spectrum of alpha
and gamma proteobacteria as well as Flavobacterium.
Length = 370
Score = 31.0 bits (70), Expect = 1.4
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQT 99
D ++VGGG+ G A L+ P +I ++E + +G + T
Sbjct: 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHT 41
>gnl|CDD|237224 PRK12842, PRK12842, putative succinate dehydrogenase; Reviewed.
Length = 574
Score = 31.2 bits (71), Expect = 1.5
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 14/77 (18%)
Query: 49 MSSSQSPALYDVVVVGGGIVGVA---TARELKLNYPKMKICLVEKEKELGMHQTGHNSGV 105
+ DV+V+G G G++ TAR+L L+ + ++EKE G T SG
Sbjct: 1 EECMTNELTCDVLVIGSGAGGLSAAITARKLGLD-----VVVLEKEPVFG--GTTAFSG- 52
Query: 106 VHAGIYYKPGTLKAKLC 122
G+ + PG A+
Sbjct: 53 ---GVLWIPGNPHAREA 66
>gnl|CDD|181001 PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Provisional.
Length = 388
Score = 31.0 bits (71), Expect = 1.5
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 51 SSQSPALYDVVVVGGGIVGVATA 73
S D+ V+GGG G+A A
Sbjct: 1 SLMEKEHTDIAVIGGGPAGLAAA 23
Score = 28.7 bits (65), Expect = 6.4
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 3 SSQSPTLYDMVVVGGGIVGVATA 25
S D+ V+GGG G+A A
Sbjct: 1 SLMEKEHTDIAVIGGGPAGLAAA 23
>gnl|CDD|220868 pfam10748, DUF2531, Protein of unknown function (DUF2531). This
family of proteins with unknown function appears to be
restricted to Enterobacteriaceae.
Length = 133
Score = 29.8 bits (67), Expect = 1.5
Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 218 GGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEP 273
G + ++V ++ + +Q D L + + ++ L ADE+ L++G EP
Sbjct: 40 QGMVSKGERVTGILKDGQKKWRRVEQDDVLPNGWTIL--RLTADELTLETGDGCEP 93
>gnl|CDD|216949 pfam02254, TrkA_N, TrkA-N domain. This domain is found in a wide
variety of proteins. These protein include potassium
channels, phosphoesterases, and various other
transporters. This domain binds to NAD.
Length = 116
Score = 29.5 bits (67), Expect = 1.5
Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 60 VVVVGGGIVGVATARELKLNYPKMKICLVEKEKE 93
++++G G VG + A EL+ P + + ++K+ E
Sbjct: 1 IIIIGYGRVGRSLAEELREGGPDVVV--IDKDPE 32
>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase.
This family consists of various amine oxidases,
including maze polyamine oxidase (PAO) and various
flavin containing monoamine oxidases (MAO). The aligned
region includes the flavin binding site of these
enzymes. The family also contains phytoene
dehydrogenases and related enzymes. In vertebrates MAO
plays an important role regulating the intracellular
levels of amines via there oxidation; these include
various neurotransmitters, neurotoxins and trace amines.
In lower eukaryotes such as aspergillus and in bacteria
the main role of amine oxidases is to provide a source
of ammonium. PAOs in plants, bacteria and protozoa
oxidase spermidine and spermine to an aminobutyral,
diaminopropane and hydrogen peroxide and are involved in
the catabolism of polyamines. Other members of this
family include tryptophan 2-monooxygenase, putrescine
oxidase, corticosteroid binding proteins and
antibacterial glycoproteins.
Length = 444
Score = 31.0 bits (70), Expect = 1.7
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGL 258
G + +++ LGG +RLN +V S ++ + VT++T G +E+ +V L
Sbjct: 204 GGLPQLIAAALGLLGGRVRLNTRVRSITKSGDGVTVTTVDGRTIEADAVIVTVPL 258
>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins
[Amino acid transport and metabolism].
Length = 542
Score = 30.9 bits (70), Expect = 1.8
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 58 YDVVVVGGGIVGVATAREL 76
YD V+VG G G A L
Sbjct: 8 YDYVIVGSGSAGSVLAARL 26
>gnl|CDD|140294 PTZ00268, PTZ00268, glycosylphosphatidylinositol-specific
phospholipase C; Provisional.
Length = 380
Score = 30.2 bits (68), Expect = 2.1
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 15/72 (20%)
Query: 337 WRDFSVRELF-------STLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEI 389
WR R +F + + YP R SK M+ W M + +L Q +E +
Sbjct: 192 WRVSRRRRIFLVVASGRNYVPYP--------AARIRSKCMVSRWVNQMSLRKLLQALENL 243
Query: 390 EAGDIQRGPSGV 401
D++ +GV
Sbjct: 244 LLDDLKYPQTGV 255
>gnl|CDD|224152 COG1231, COG1231, Monoamine oxidase [Amino acid transport and
metabolism].
Length = 450
Score = 30.5 bits (69), Expect = 2.1
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 216 ELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALV 254
+LG I LN+ V ++ + VT++ + Y LV
Sbjct: 218 QLGTRILLNEPVRRIDQDGDGVTVTADDVGQYVADYVLV 256
Score = 28.6 bits (64), Expect = 7.4
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 59 DVVVVGGGIVGVATARELK 77
DV++VG G+ G++ A ELK
Sbjct: 9 DVIIVGAGLAGLSAAYELK 27
>gnl|CDD|107204 cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine
beta-synthase (CBS) and Cysteine synthase. CBS is a
unique heme-containing enzyme that catalyzes a pyridoxal
5'-phosphate (PLP)-dependent condensation of serine and
homocysteine to give cystathionine. Deficiency of CBS
leads to homocystinuria, an inherited disease of sulfur
metabolism characterized by increased levels of the
toxic metabolite homocysteine. Cysteine synthase on the
other hand catalyzes the last step of cysteine
biosynthesis. This subgroup also includes an
O-Phosphoserine sulfhydrylase found in hyperthermophilic
archaea which produces L-cysteine from sulfide and the
more thermostable O-phospho-L-serine.
Length = 291
Score = 30.2 bits (69), Expect = 2.4
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 11 DMVVV----GGGIVGVATARELKLKYPKMKTCLVE 41
D V GG I GVA R LK K P ++ V+
Sbjct: 162 DAFVAGVGTGGTITGVA--RYLKEKNPNVRIVGVD 194
Score = 29.8 bits (68), Expect = 2.9
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 59 DVVVV----GGGIVGVATARELKLNYPKMKICLVE 89
D V GG I GVA R LK P ++I V+
Sbjct: 162 DAFVAGVGTGGTITGVA--RYLKEKNPNVRIVGVD 194
>gnl|CDD|232908 TIGR00292, TIGR00292, thiazole biosynthesis enzyme. This enzyme is
involved in the biosynthesis of the thiamine precursor
thiazole, and is repressed by thiamine. This family
includes c-thi1, a Citrus gene induced during natural
and ethylene induced fruit maturation and is highly
homologous to plant and yeast thi genes involved in
thiamine biosynthesis [Biosynthesis of cofactors,
prosthetic groups, and carriers, Thiamine].
Length = 254
Score = 29.8 bits (67), Expect = 2.5
Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 18/127 (14%)
Query: 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLK 118
DV++VG G G+ A L N +K+C++E+ G G + G L
Sbjct: 23 DVIIVGAGPSGLTAAYYLAKN--GLKVCVLERSLAFG-------------GGSWGGGMLF 67
Query: 119 AKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAE 178
+K+ VE A+E D+ I Y+ G V + + E + L +++Q K S E
Sbjct: 68 SKIVVE--KPAHEILDEFGIRYEDEGDGYV-VADSAEFISTLASKALQAGAKIFNGTSVE 124
Query: 179 EIKTIEP 185
++ T +
Sbjct: 125 DLITRDD 131
>gnl|CDD|177909 PLN02268, PLN02268, probable polyamine oxidase.
Length = 435
Score = 30.0 bits (68), Expect = 2.6
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 60 VVVVGGGIVGVATAREL 76
V+V+GGGI G+A AR L
Sbjct: 3 VIVIGGGIAGIAAARAL 19
>gnl|CDD|240384 PTZ00367, PTZ00367, squalene epoxidase; Provisional.
Length = 567
Score = 30.2 bits (68), Expect = 2.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 58 YDVVVVGGGIVGVATAREL 76
YDV++VGG I G A+ L
Sbjct: 34 YDVIIVGGSIAGPVLAKAL 52
>gnl|CDD|237223 PRK12839, PRK12839, hypothetical protein; Provisional.
Length = 572
Score = 30.2 bits (68), Expect = 2.7
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 51 SSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95
+ YDVVVVG G G++ A + Y K+ +VEK G
Sbjct: 2 TPSMTHTYDVVVVGSGAGGLSAA--VAAAYGGAKVLVVEKASTCG 44
>gnl|CDD|223522 COG0445, GidA, Flavin-dependent tRNA uridine
5-carboxymethylaminomethyl modification enzyme GidA
[Cell cycle control, cell division, chromosome
partitioning].
Length = 621
Score = 29.8 bits (68), Expect = 3.4
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 4/21 (19%)
Query: 58 YDVVVVGGGIVGV----ATAR 74
YDV+V+GGG GV A AR
Sbjct: 5 YDVIVIGGGHAGVEAALAAAR 25
>gnl|CDD|216700 pfam01787, Ilar_coat, Ilarvirus coat protein. This family consists
of various coat proteins from the ilarviruses part of
the Bromoviridae, members include apple mosaic virus and
prune dwarf virus. The ilarvirus coat protein is
required to initiate replication of the viral genome in
host plants. Members of the Bromoviridae have a positive
stand ssRNA genome with no DNA stage in there
replication.
Length = 204
Score = 29.3 bits (66), Expect = 3.6
Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 317 DGSVWLGPNAV--LAFKKEGYRWRDF 340
DG GPNA+ L FKK YR R F
Sbjct: 122 DGDNPPGPNALGRLRFKKGTYRGRQF 147
>gnl|CDD|223110 COG0031, CysK, Cysteine synthase [Amino acid transport and
metabolism].
Length = 300
Score = 29.4 bits (67), Expect = 3.6
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 6/35 (17%)
Query: 59 DVVVVG---GG-IVGVATARELKLNYPKMKICLVE 89
D V G GG I GVA R LK P ++I V+
Sbjct: 171 DAFVAGVGTGGTITGVA--RYLKERNPNVRIVAVD 203
Score = 28.3 bits (64), Expect = 8.2
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 6/35 (17%)
Query: 11 DMVVVG---GG-IVGVATARELKLKYPKMKTCLVE 41
D V G GG I GVA R LK + P ++ V+
Sbjct: 171 DAFVAGVGTGGTITGVA--RYLKERNPNVRIVAVD 203
>gnl|CDD|234144 TIGR03197, MnmC_Cterm, tRNA U-34 5-methylaminomethyl-2-thiouridine
biosynthesis protein MnmC, C-terminal domain. In
Escherichia coli, the protein previously designated YfcK
is now identified as the bifunctional enzyme MnmC. It
acts, following the action of the heterotetramer of GidA
and MnmE, in the modification of U-34 of certain tRNA to
5-methylaminomethyl-2-thiouridine (mnm5s2U). In other
bacterial, the corresponding proteins are usually but
always found as a single polypeptide chain, but
occasionally as the product of tandem genes. This model
represents the C-terminal region of the multifunctional
protein [Protein synthesis, tRNA and rRNA base
modification].
Length = 381
Score = 29.5 bits (67), Expect = 3.7
Identities = 35/213 (16%), Positives = 76/213 (35%), Gaps = 31/213 (14%)
Query: 83 MKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLA---YEYFDKRNIP 139
++ L E+++ +G+ G ++ + ++ + A Y + P
Sbjct: 10 WQVTLYEQDEAPAQGASGNPQGALYPLLS-ADDNPLSRFFLAAFLYARRFYRQLAEAGFP 68
Query: 140 Y--KKCGKLIVALNE-------QLEPLHDLYERSIQNNVKDVRLVSAEEIKT---IEPYC 187
+ + CG L +A +E +L E + R V AE+ I
Sbjct: 69 FDHEWCGVLQLAYDEKEAERLQKLLEQLGFPE-------ELARWVDAEQASQLAGIPLPY 121
Query: 188 KGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHL 247
G+ P G + + R + + + N ++ S + + E + G+ +
Sbjct: 122 GGL---FFPQGGWLSPPQLCRALLAHA-GIRLTLHFNTEITSLERDGEGWQLLDANGEVI 177
Query: 248 ESSYALVCAGLQADEMALKSGCSLEPAIVPFRG 280
+S ++ G QA ++A + + P RG
Sbjct: 178 AASVVVLANGAQAGQLAQ----TAHLPLRPVRG 206
>gnl|CDD|224092 COG1171, IlvA, Threonine dehydratase [Amino acid transport and
metabolism].
Length = 347
Score = 29.5 bits (67), Expect = 3.7
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 53 QSPALYDVVVV----GGGIVGVATARELKLNYPKMKICLVEKEKELGMHQ 98
Q P L D V V GG I G+ATA LK P++K+ VE E M+
Sbjct: 171 QLPDLPDAVFVPVGGGGLISGIATA--LKALSPEIKVIGVEPEGAPSMYA 218
Score = 29.1 bits (66), Expect = 5.4
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 25/84 (29%)
Query: 5 QSPTLYDMVVV----GGGIVGVATARELKLKYPKMKTCLVEKEKEFFSMSSSQSPALYDV 60
Q P L D V V GG I G+ATA LK P++K VE +P++Y
Sbjct: 171 QLPDLPDAVFVPVGGGGLISGIATA--LKALSPEIKVIGVE---------PEGAPSMYAS 219
Query: 61 VVVGGGIV----------GVATAR 74
+ G +V G+A R
Sbjct: 220 LKAGKIVVVLPDVGTIADGLAVKR 243
>gnl|CDD|235727 PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydroxylase;
Validated.
Length = 500
Score = 29.9 bits (68), Expect = 3.7
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 49 MSSSQSPAL-YDVVVVGGGIVGVATA 73
M++ A DVV+VG G VG+ A
Sbjct: 1 MAAQHPDAHDTDVVIVGAGPVGLTLA 26
>gnl|CDD|184994 PRK15034, PRK15034, nitrate/nitrite transport protein NarU;
Provisional.
Length = 462
Score = 29.9 bits (67), Expect = 3.8
Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 30/86 (34%)
Query: 303 PNFPFLGVHFTPRMDGSV---------------------WLGPNAVLAFKKEGYRWRDFS 341
P F FLGV+ P+ DGSV W G N + + + S
Sbjct: 190 PVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASSRA--------S 241
Query: 342 VRELFSTLRYPGFWRLGLKY-TRYGS 366
+ + L+ W L L Y +GS
Sbjct: 242 IADQLPVLQRLHLWLLSLLYLATFGS 267
>gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F. This
enzyme is the partner of the peroxiredoxin (alkyl
hydroperoxide reductase) AhpC which contains the
peroxide-reactive cysteine. AhpF contains the reductant
(NAD(P)H) binding domain (pfam00070) and presumably acts
to resolve the disulfide which forms after oxidation of
the active site cysteine in AphC. This proteins contains
two paired conserved cysteine motifs, CxxCP and CxHCDGP
[Cellular processes, Detoxification, Cellular processes,
Adaptations to atypical conditions].
Length = 515
Score = 29.6 bits (67), Expect = 4.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 47 FSMSSSQSPALYDVVVVGGGIVGVATA 73
+ S+ + YDV+VVGGG G A A
Sbjct: 202 EAASALEQLDPYDVLVVGGGPAGAAAA 228
>gnl|CDD|236341 PRK08850, PRK08850, 2-octaprenyl-6-methoxyphenol hydroxylase;
Validated.
Length = 405
Score = 29.4 bits (66), Expect = 4.1
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 59 DVVVVGGGIVGVATARELK 77
DV ++GGG+VG+A A LK
Sbjct: 6 DVAIIGGGMVGLALAAALK 24
>gnl|CDD|215281 PLN02507, PLN02507, glutathione reductase.
Length = 499
Score = 29.4 bits (66), Expect = 4.2
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 15/118 (12%)
Query: 58 YDVVVVGGGIVGVATARELKLNY-PKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGT 116
+D+ V+G G GV AR N+ K+ IC EL H S G G
Sbjct: 26 FDLFVIGAGSGGVRAAR-FSANFGAKVGIC------ELPFHPISSESIGGVGGTCVIRGC 78
Query: 117 LKAKLCVEGMNLAYEYFDKRNIPYKKCG-------KLIVALNEQLEPLHDLYERSIQN 167
+ K+ V G E+ D +N ++ KL+ +++ L+ +Y+R + N
Sbjct: 79 VPKKILVYGATFGGEFEDAKNYGWEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLAN 136
>gnl|CDD|139579 PRK13448, atpC, F0F1 ATP synthase subunit epsilon; Provisional.
Length = 135
Score = 28.2 bits (63), Expect = 4.3
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 9/52 (17%)
Query: 405 ALSSSGDLVD------DFGVKAIHSPHTGIVDWGLVTRVMG---EEFCELGG 447
A S D VD DFGV A H+P ++ G++T G ++ LGG
Sbjct: 15 AFSGEVDQVDIPGVEGDFGVLAGHAPVVAVIRPGILTVTAGGNQQKIVVLGG 66
>gnl|CDD|236317 PRK08638, PRK08638, threonine dehydratase; Validated.
Length = 333
Score = 29.3 bits (66), Expect = 4.6
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Query: 57 LYDV----VVVGGG--IVGVATARELKLNYPKMKICLVEKEKELGM 96
L+DV V +GGG I G+A A LK P + I V+ E GM
Sbjct: 173 LWDVDTVIVPIGGGGLIAGIAVA--LKSINPTIHIIGVQSENVHGM 216
>gnl|CDD|226103 COG3573, COG3573, Predicted oxidoreductase [General function
prediction only].
Length = 552
Score = 29.4 bits (66), Expect = 4.6
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKE 93
DV+VVG G+ G+ A EL ++ ++++E E
Sbjct: 6 ADVIVVGAGLAGLVAAAELA--DAGKRVLILDQEGE 39
>gnl|CDD|236046 PRK07538, PRK07538, hypothetical protein; Provisional.
Length = 413
Score = 29.1 bits (66), Expect = 4.9
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 59 DVVVVGGGIVGVATA 73
V++ GGGI G+ A
Sbjct: 2 KVLIAGGGIGGLTLA 16
>gnl|CDD|233382 TIGR01372, soxA, sarcosine oxidase, alpha subunit family,
heterotetrameric form. This model describes the alpha
subunit of a family of known and putative
heterotetrameric sarcosine oxidases. Five operons of
such oxidases are found in Mesorhizobium loti and three
in Agrobacterium tumefaciens, a high enough copy number
to suggest that not all members are share the same
function. The model is designated as subfamily rather
than equivalog for this reason.Sarcosine oxidase
catalyzes the oxidative demethylation of sarcosine to
glycine. The reaction converts tetrahydrofolate to
5,10-methylene-tetrahydrofolate. The enzyme is known in
monomeric and heterotetrameric (alpha,beta,gamma,delta)
forms [Energy metabolism, Amino acids and amines].
Length = 985
Score = 29.3 bits (66), Expect = 5.1
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 7/33 (21%)
Query: 50 SSSQSPALY-------DVVVVGGGIVGVATARE 75
+ P Y DV+VVG G G+A A
Sbjct: 149 DTETDPDTYDKVNAHCDVLVVGAGPAGLAAALA 181
>gnl|CDD|234819 PRK00711, PRK00711, D-amino acid dehydrogenase small subunit;
Validated.
Length = 416
Score = 29.0 bits (66), Expect = 5.3
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 60 VVVVGGGIVGVATA 73
VVV+G G++GV +A
Sbjct: 3 VVVLGSGVIGVTSA 16
>gnl|CDD|180582 PRK06475, PRK06475, salicylate hydroxylase; Provisional.
Length = 400
Score = 29.0 bits (65), Expect = 5.4
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 51 SSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKEL 94
+ SP ++ G G+ G++ A L+L + ++EK +EL
Sbjct: 1 TRGSP-----LIAGAGVAGLSAA--LELAARGWAVTIIEKAQEL 37
>gnl|CDD|178578 PLN03000, PLN03000, amine oxidase.
Length = 881
Score = 29.2 bits (65), Expect = 5.5
Identities = 69/266 (25%), Positives = 103/266 (38%), Gaps = 60/266 (22%)
Query: 44 KEFFSMSSSQSPALYDVVVVGGGIVGVATAREL-KLNYPKMKICLVEKEKELG------M 96
K+ F SS+S VV+VG G+ G+A AR+L + + K+ ++E K G
Sbjct: 175 KDKFPAQSSKS----SVVIVGAGLSGLAAARQLMRFGF---KVTVLEGRKRPGGRVYTKK 227
Query: 97 HQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDKRN-IP-YKKCGKLI------- 147
+ G GTL L + L + R+ P Y+ GK +
Sbjct: 228 MEANRVGAAADLGGSVLTGTLGNPLGIIARQLGSSLYKVRDKCPLYRVDGKPVDPDVDLK 287
Query: 148 --VALNEQLEPLHDLYERSIQNNVK-DVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDW- 203
VA N+ L+ L R + +V DV L +A E T + + G+ +W
Sbjct: 288 VEVAFNQLLDKASKL--RQLMGDVSMDVSLGAALE--TFRQVSG--NDVATEEMGLFNWH 341
Query: 204 ---------GLVTRV------------MGEEFCEL-GGEIRLNQQVESFKENPESVTIST 241
GLV+++ MG + C L GG RL V++ EN + T
Sbjct: 342 LANLEYANAGLVSKLSLAFWDQDDPYDMGGDHCFLPGGNGRL---VQALAENVPILYEKT 398
Query: 242 KQGDHLESSYALVCAGLQADE--MAL 265
Q S+ V AG Q E M L
Sbjct: 399 VQTIRYGSNGVKVIAGNQVYEGDMVL 424
>gnl|CDD|225885 COG3349, COG3349, Uncharacterized conserved protein [Function
unknown].
Length = 485
Score = 29.3 bits (66), Expect = 5.5
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 60 VVVVGGGIVGVATAREL 76
V + G G+ G+A A EL
Sbjct: 3 VAIAGAGLAGLAAAYEL 19
>gnl|CDD|215840 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme. Members of
this family are all pyridoxal-phosphate dependent
enzymes. This family includes: serine dehydratase
EC:4.2.1.13 P20132, threonine dehydratase EC:4.2.1.16,
tryptophan synthase beta chain EC:4.2.1.20, threonine
synthase EC:4.2.99.2, cysteine synthase EC:4.2.99.8
P11096, cystathionine beta-synthase EC:4.2.1.22,
1-aminocyclopropane-1-carboxylate deaminase EC:4.1.99.4.
Length = 295
Score = 28.9 bits (65), Expect = 5.8
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 59 DVVVV----GGGIVGVATARELKLNYPKMKICLVE 89
D VVV GG G+A LK P +++ VE
Sbjct: 161 DAVVVPVGGGGLAAGIARG--LKELGPGIRVIGVE 193
>gnl|CDD|232791 TIGR00031, UDP-GALP_mutase, UDP-galactopyranose mutase. This
enzyme is involved in the conversion of UDP-GALP into
UDP-GALF through a 2-keto intermediate. It contains FAD
as a cofactor. The gene is known as glf, ceoA, and
rfbD. It is known experimentally in E. coli,
Mycobacterium tuberculosis, and Klebsiella pneumoniae
[Cell envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides].
Length = 377
Score = 29.0 bits (65), Expect = 6.1
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95
++D ++VG G+ G+ A L K ++ +VEK +G
Sbjct: 1 MFDYIIVGAGLSGIVLANILA-QLNK-RVLVVEKRNHIG 37
>gnl|CDD|180854 PRK07121, PRK07121, hypothetical protein; Validated.
Length = 492
Score = 29.1 bits (66), Expect = 6.2
Identities = 10/18 (55%), Positives = 10/18 (55%)
Query: 58 YDVVVVGGGIVGVATARE 75
DVVVVG G G A E
Sbjct: 21 ADVVVVGFGAAGACAAIE 38
>gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed.
Length = 549
Score = 29.1 bits (66), Expect = 6.3
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKE 93
DV+VVG G+ G+ A EL ++ L+++E E
Sbjct: 5 ADVIVVGAGLAGLVAAAELADA--GKRVLLLDQENE 38
>gnl|CDD|215116 PLN02172, PLN02172, flavin-containing monooxygenase FMO GS-OX.
Length = 461
Score = 29.1 bits (65), Expect = 6.3
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 49 MSSSQSP-ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95
M+ +Q+P V V+G G G+ AREL+ + + E+EK++G
Sbjct: 1 MAPAQNPINSQHVAVIGAGAAGLVAARELRRE--GHTVVVFEREKQVG 46
>gnl|CDD|237425 PRK13557, PRK13557, histidine kinase; Provisional.
Length = 540
Score = 28.9 bits (65), Expect = 6.6
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 56 ALYDVVVVGGGIVGVATARELKLNYPKMKICL 87
L+ +++ GG+ GV ARE + PK+K+ L
Sbjct: 463 LLFTDLIMPGGMNGVMLAREARRRQPKIKVLL 494
>gnl|CDD|235362 PRK05192, PRK05192, tRNA uridine 5-carboxymethylaminomethyl
modification enzyme GidA; Validated.
Length = 618
Score = 28.9 bits (66), Expect = 6.7
Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 4/21 (19%)
Query: 58 YDVVVVGGGIVGV----ATAR 74
YDV+VVGGG G A AR
Sbjct: 5 YDVIVVGGGHAGCEAALAAAR 25
>gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional.
Length = 499
Score = 29.0 bits (65), Expect = 6.9
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 10 YDMVVVGGGIVGVATARE 27
YD+VV+GGG G+A A+E
Sbjct: 6 YDLVVIGGGSGGMAAAKE 23
Score = 28.6 bits (64), Expect = 8.9
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 58 YDVVVVGGGIVGVATARE 75
YD+VV+GGG G+A A+E
Sbjct: 6 YDLVVIGGGSGGMAAAKE 23
>gnl|CDD|237942 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F;
Provisional.
Length = 517
Score = 29.0 bits (66), Expect = 6.9
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 58 YDVVVVGGGIVGVATA 73
YDV+VVGGG G A A
Sbjct: 212 YDVLVVGGGPAGAAAA 227
>gnl|CDD|236111 PRK07843, PRK07843, 3-ketosteroid-delta-1-dehydrogenase;
Reviewed.
Length = 557
Score = 28.8 bits (65), Expect = 7.3
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 12/62 (19%)
Query: 6 SPTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFFSMSSSQSPALYDVVVVGG 65
+ YD+VVVG G G+ A L + + T +VEK + S+++S GG
Sbjct: 4 TVQEYDVVVVGSGAAGMVAA--LTAAHRGLSTVVVEK-APHYGGSTARS---------GG 51
Query: 66 GI 67
G+
Sbjct: 52 GV 53
>gnl|CDD|224550 COG1635, THI4, Ribulose 1,5-bisphosphate synthetase, converts
PRPP to RuBP, flavoprotein [Carbohydrate transport
and metabolism].
Length = 262
Score = 28.4 bits (64), Expect = 7.5
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95
DV++VG G G+ A L +K+ + E++ G
Sbjct: 32 DVIIVGAGPSGLTAAYYLAKA--GLKVAIFERKLSFG 66
>gnl|CDD|217235 pfam02800, Gp_dh_C, Glyceraldehyde 3-phosphate dehydrogenase,
C-terminal domain. GAPDH is a tetrameric NAD-binding
enzyme involved in glycolysis and glyconeogenesis.
C-terminal domain is a mixed alpha/antiparallel beta
fold.
Length = 157
Score = 27.9 bits (63), Expect = 8.5
Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 20/62 (32%)
Query: 172 VRL---VSAEEIKTI-----EPYCKGVKA-----------IHSPNTGIVDWGLVTRVMGE 212
V L V+ EE+ E KG+ + P++ I D T V+
Sbjct: 90 VELEKPVTVEEVNAALKEAAEGALKGILGYTEEPLVSSDFVGDPHSSIFDAKA-TIVLNG 148
Query: 213 EF 214
F
Sbjct: 149 NF 150
>gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like,
2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and
other MDR family members. This subgroup of the medium
chain dehydrogenases/reductase (MDR)/zinc-dependent
alcohol dehydrogenase-like family has members identified
as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A
dehydrogenase and alcohol dehydrogenases. The medium
chain dehydrogenases/reductase (MDR)/zinc-dependent
alcohol dehydrogenase-like family, which contains the
zinc-dependent alcohol dehydrogenase (ADH-Zn) and
related proteins, is a diverse group of proteins related
to the first identified member, class I mammalian ADH.
MDRs display a broad range of activities and are
distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability.
Length = 277
Score = 28.4 bits (64), Expect = 8.6
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 60 VVVVGGGIVGVATARELKLN 79
V VVG G+VG+ A+ K
Sbjct: 101 VAVVGLGLVGLLAAQLAKAA 120
>gnl|CDD|130194 TIGR01124, ilvA_2Cterm, threonine ammonia-lyase, biosynthetic, long
form. This model describes a form of threonine
ammonia-lyase, a pyridoxal-phosphate dependent enzyme,
with two copies of the threonine dehydratase C-terminal
domain (pfam00585). Members with known function
participate in isoleucine biosynthesis and are inhibited
by isoleucine. Alternate name: threonine deaminase,
threonine dehydratase. Forms scoring between the trusted
and noise cutoff tend to branch with this subgroup of
threonine ammonia-lyase phylogenetically but have only a
single copy of the C-terminal domain [Amino acid
biosynthesis, Pyruvate family].
Length = 499
Score = 28.5 bits (64), Expect = 8.9
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 7/68 (10%)
Query: 49 MSSSQSPALYDVVVVGGG--IVGVATARELKLNYPKMKICLVEKEKELGMHQT---GHNS 103
+ +P V VGGG GVA +K P++K+ VE M Q G
Sbjct: 160 LRQVANPLDAVFVPVGGGGLAAGVAAL--IKQLMPEIKVIGVEPTDSDCMKQALDAGEPV 217
Query: 104 GVVHAGIY 111
+ G++
Sbjct: 218 DLDQVGLF 225
>gnl|CDD|235412 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase
subunit B; Validated.
Length = 422
Score = 28.3 bits (64), Expect = 8.9
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 58 YDVVVVGGGIVGVATA 73
+DV+V+GGG+ G+ A
Sbjct: 3 FDVLVIGGGLAGLTAA 18
>gnl|CDD|236036 PRK07512, PRK07512, L-aspartate oxidase; Provisional.
Length = 513
Score = 28.3 bits (64), Expect = 9.2
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 49 MSSSQSPALYDVVVVGGGIVGVATARELKL 78
M V+VGGG+ G+ A LKL
Sbjct: 1 MMEDLRILTGRPVIVGGGLAGLMAA--LKL 28
>gnl|CDD|240630 cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic
domains. Alanine dehydrogenase (L-AlaDH) catalyzes the
NAD-dependent conversion of pyruvate to L-alanine via
reductive amination. Like formate dehydrogenase and
related enzymes, L-AlaDH is comprised of 2 domains
connected by a long alpha helical stretch, each
resembling a Rossmann fold NAD-binding domain. The
NAD-binding domain is inserted within the linear
sequence of the more divergent catalytic domain. Ligand
binding and active site residues are found in the cleft
between the subdomains. L-AlaDH is typically hexameric
and is critical in carbon and nitrogen metabolism in
micro-organisms.
Length = 359
Score = 28.1 bits (64), Expect = 9.6
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 60 VVVVGGGIVGVATAR 74
VV++G G+VG AR
Sbjct: 171 VVILGAGVVGENAAR 185
>gnl|CDD|203096 pfam04820, Trp_halogenase, Tryptophan halogenase. Tryptophan
halogenase catalyzes the chlorination of tryptophan to
form 7-chlorotryptophan. This is the first step in the
biosynthesis of pyrrolnitrin, an antibiotic with
broad-spectrum anti-fungal activity. Tryptophan
halogenase is NADH-dependent.
Length = 457
Score = 28.5 bits (64), Expect = 9.8
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
Query: 59 DVVVVGGGIVG----VATARELKLNYPKMKICLVEKEKELGMHQTG 100
+V+VGGG G A AR LK + LVE E E+G G
Sbjct: 1 KIVIVGGGTAGWMAAAALARALKGGL---DVTLVESE-EIGTVGVG 42
>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase,
animal/bacterial. The tripeptide glutathione is an
important reductant, e.g., for maintaining the cellular
thiol/disulfide status and for protecting against
reactive oxygen species such as hydrogen peroxide.
Glutathione-disulfide reductase regenerates reduced
glutathione from oxidized glutathione (glutathione
disulfide) + NADPH. This model represents one of two
closely related subfamilies of glutathione-disulfide
reductase. Both are closely related to trypanothione
reductase, and separate models are built so each of the
three can describe proteins with conserved function.
This model describes glutathione-disulfide reductases
of animals, yeast, and a number of animal-resident
bacteria [Energy metabolism, Electron transport].
Length = 450
Score = 28.3 bits (63), Expect = 9.9
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95
YD +V+GGG G+A+AR + K L+ + K+LG
Sbjct: 3 YDYLVIGGGSGGIASARRAAEHGAKA---LLVEAKKLG 37
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.137 0.409
Gapped
Lambda K H
0.267 0.0851 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,519,302
Number of extensions: 2420370
Number of successful extensions: 2871
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2849
Number of HSP's successfully gapped: 247
Length of query: 473
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 373
Effective length of database: 6,502,202
Effective search space: 2425321346
Effective search space used: 2425321346
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.1 bits)