RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7710
(473 letters)
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT
structure initiative, northeast structural genomics
consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Length = 369
Score = 414 bits (1066), Expect = e-143
Identities = 92/366 (25%), Positives = 148/366 (40%), Gaps = 48/366 (13%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTL 117
D +V+G G+VG+A AR L ++ + E + +G + NS V+HAGIYY +L
Sbjct: 5 IDCIVIGAGVVGLAIARALAA--GGHEVLVAEAAEGIGTGTSSRNSEVIHAGIYYPADSL 62
Query: 118 KAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVS 176
KA+LCV G +L YEY R +P+++ GKLIVA ++ + L + R+ N V D++ +
Sbjct: 63 KARLCVRGKHLLYEYCAARGVPHQRLGKLIVATSDAEASQLDSIARRAGANGVDDLQHID 122
Query: 177 AEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPES 236
+ +EP A+ SP+TGIVD + + G ++ + + + + PE
Sbjct: 123 GAAARRLEPALHCTAALVSPSTGIVDSHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEG 182
Query: 237 ---VTISTKQGDHLESSYALVCAGLQADEMALKSGCSLE---PAIVPFRGEYLLLNPAKQ 290
+ + L + AGL A +A + P +G Y L A +
Sbjct: 183 GFELDFGGAEPMTLSCRVLINAAGLHAPGLARRIEGIPRDSIPPEYLCKGSYFTL--AGR 240
Query: 291 HLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLR 350
IYPVP LGVH T + G GP+ E Y
Sbjct: 241 APFSRLIYPVPQH--AGLGVHLTLDLGGQAKFGPDTEW-IATEDYTLDPRRADVF----- 292
Query: 351 YPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSG 410
++ Y + G + G +G+R + +S
Sbjct: 293 ----------------------------YAAVRSYWPALPDGALAPGYTGIRPK-ISGPH 323
Query: 411 DLVDDF 416
+ DF
Sbjct: 324 EPAADF 329
Score = 62.5 bits (153), Expect = 7e-11
Identities = 11/49 (22%), Positives = 20/49 (40%)
Query: 417 GVKAIHSPHTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPEMV 465
A+ SP TGIVD + + G ++ + + + + PE
Sbjct: 135 CTAALVSPSTGIVDSHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGG 183
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET:
FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A*
3nyf_A* 3sm8_A*
Length = 381
Score = 130 bits (329), Expect = 5e-34
Identities = 48/282 (17%), Positives = 94/282 (33%), Gaps = 33/282 (11%)
Query: 55 PALYDVVVVGGGIVGVATAREL-KLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYK 113
P D +V+G GI G +T L ++ ++E+E + G H TG ++ Y
Sbjct: 7 PIEADYLVIGAGIAGASTGYWLSAHG----RVVVLEREAQPGYHSTGRSAAHYTVA--YG 60
Query: 114 PGTLKAKLCVEGMNLAYEYFDKR---NIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVK 170
+ L ++ + +++V ++ E L YE
Sbjct: 61 TPQV-RALTAASRAF-FDNPPAGFCEHPLLSPRPEMVVDFSDDPEELRRQYESGKALVP- 117
Query: 171 DVRLVSAEEIKTIEPYC--KGVK-AIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQV 227
+RL+ AE+ +I P V A + P +D + + G++ N +
Sbjct: 118 QMRLLDAEQACSIVPVLRRDKVFGATYDPTGADIDTDALHQGYLRGIRRNQGQVLCNHEA 177
Query: 228 ESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNP 287
+ + + G ++ + AG D +A +G + P R + P
Sbjct: 178 LEIRRVDGAWEVRCDAGS-YRAAVLVNAAGAWCDAIAGLAGVRPLG-LQPKRRSAFIFAP 235
Query: 288 AKQHLVRGNIYPVPDPNFPFL-----GVHFTPRMDGSVWLGP 324
+ ++P L + P G + P
Sbjct: 236 PP---------GIDCHDWPMLVSLDESFYLKPD-AGMLLGSP 267
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 111 bits (281), Expect = 2e-27
Identities = 58/275 (21%), Positives = 105/275 (38%), Gaps = 30/275 (10%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTL 117
Y+ VV+GGGI+G A A L L E +G T +G++ A +
Sbjct: 18 YEAVVIGGGIIGSAIAYYLAKEN--KNTALFES-GTMGGRTTSAAAGMLGAHAECEERDA 74
Query: 118 KAKLCVEGMNLAYEYFDKR-------NIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVK 170
+ L Y+ + +I G +A +E D+ + +++
Sbjct: 75 FFDFAMHSQRL-YKGLGEELYALSGVDIRQHNGGMFKLAFSE-----EDVLQLRQMDDLD 128
Query: 171 DVRLVSAEEIKTIEPYC-KGVK-AIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVE 228
V S EE+ EPY + A + V+ V + + LG EI + V
Sbjct: 129 SVSWYSKEEVLEKEPYASGDIFGASFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVL 188
Query: 229 SFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPA 288
+ + E++ I T GD + +++ +V +G+ + + G L A +P +GE L +
Sbjct: 189 HVERDGEALFIKTPSGD-VWANHVVVASGVWSGMFFKQLG--LNNAFLPVKGECLSVWND 245
Query: 289 KQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLG 323
L + + + PR G + +G
Sbjct: 246 DIPLTK----TLYHD-----HCYIVPRKSGRLVVG 271
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A
{Aeropyrum pernix} PDB: 3vqr_A*
Length = 448
Score = 102 bits (255), Expect = 1e-23
Identities = 51/307 (16%), Positives = 95/307 (30%), Gaps = 49/307 (15%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTL 117
+D VVVG G+VG+A A LK+ + +V+ G +G + +
Sbjct: 24 FDYVVVGAGVVGLAAAYYLKVW-SGGSVLVVDAGHAPGSGDSGRSMAAFRT-FFSSTMNR 81
Query: 118 KAKLCVEGMNLAYEYFDK--RNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLV 175
+ + L +E + ++ K G L V E+ + + + + D ++
Sbjct: 82 --LVAGSTVRL-FEDAQRGGEDLGLVKSGYLFVYDRERWREVEEPLREAGEEGR-DYLII 137
Query: 176 SAEEIKTIEPYCKGVK---------------AIHSPNTGIVDWGLVTRVMGEEFCELGGE 220
EE++ V A+ + G +D V G E
Sbjct: 138 PPEELERRLGMNTRVSDGEEAEVLGVGDVEGAVLIRSAGFLDAEKVVDYYYRRASGAGVE 197
Query: 221 IRLNQQVESFKENPESVT----------------ISTKQGDHLESSYALV-CAGLQADEM 263
++V + P G +E LV AG+ ++ +
Sbjct: 198 FIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDGTRVEVGEKLVVAAGVWSNRL 257
Query: 264 ALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYP-VPDPNFPFL-----GVHFTPR-M 316
G P + ++ + + L R + P L V P
Sbjct: 258 LNPLGIDT-F-SRPKKRMVFRVSASTEGLRRIMREGDLAGAGAPPLIILPKRVLVRPAPR 315
Query: 317 DGSVWLG 323
+GS W+
Sbjct: 316 EGSFWVQ 322
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B*
3ada_B*
Length = 405
Score = 98.5 bits (246), Expect = 1e-22
Identities = 62/323 (19%), Positives = 113/323 (34%), Gaps = 36/323 (11%)
Query: 55 PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKP 114
YD ++VGGG G+ATA L N+ + ++EK L N+ ++ + Y
Sbjct: 19 KKSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEK-GWLAGGNMARNTTIIRS-NYLWD 76
Query: 115 GTLKAKLCVEGMNLAYEYFDKR---NIPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVK 170
+ A + + + L +E + + + + G L +A + E + N V
Sbjct: 77 ES--AGIYEKSLKL-WEQLPEDLEYDFLFSQRGVLNLAHTLGDVRESVRRVEANKLNGV- 132
Query: 171 DVRLVSAEEIKTIEPYC-------KGVK-AIHSPNTGIVDWGLVTRVMGEEFCELGGEIR 222
D + ++K P V A P GI V + E+G +I
Sbjct: 133 DAEWLDPSQVKEACPIINTSDDIRYPVMGATWQPRAGIAKHDHVAWAFARKANEMGVDII 192
Query: 223 LNQQVESFKENPESVT-ISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGE 281
N +V F ++ E VT + T +G + + + + +A +G L P I +
Sbjct: 193 QNCEVTGFIKDGEKVTGVKTTRGT-IHAGKVALAGAGHSSVLAEMAGFEL-P-IQSHPLQ 249
Query: 282 YLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPR-MDGSVWLGPNAVLAFKKEGYRWRDF 340
L+ + PV +H + + ++ G R F
Sbjct: 250 ALVSELFE---------PVHPTVVMSNHIHVYVSQAHKGELVMGAGIDSYNGYGQR-GAF 299
Query: 341 SVRELFSTL---RYPGFWRLGLK 360
V + +P F R +
Sbjct: 300 HVIQEQMAAAVELFPIFARAHVL 322
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor
2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus
SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A*
1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A*
3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A*
1l9d_A* 1zov_A*
Length = 389
Score = 94.7 bits (236), Expect = 2e-21
Identities = 58/281 (20%), Positives = 99/281 (35%), Gaps = 33/281 (11%)
Query: 58 YDVVVVGGGIVGVATAREL-KLNYPKMKICLVEKEKELGMHQTGHNSGVVHA--GIY--- 111
+DV+VVG G +G+A +L K K LV+ H +G H I
Sbjct: 4 FDVIVVGAGSMGMAAGYQLAKQGV---KTLLVDA------FDPPHTNGSHHGDTRIIRHA 54
Query: 112 YKPGTLKAKLCVEGMNLAYEYFDK------RNIPYKKCGKLIVALNEQLEPLHDLYERSI 165
Y G L + E + + I + K G L+ + + + E +
Sbjct: 55 YGEGREYVPL----ALRSQELWYELEKETHHKI-FTKTGVLVFGPKGESAFVAETMEAAK 109
Query: 166 QNNVKDVRLVSAEEIKTIEPYCK---GVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIR 222
++++ V L+ +EI P AI PN+G++ R E G ++
Sbjct: 110 EHSL-TVDLLEGDEINKRWPGITVPENYNAIFEPNSGVLFSENCIRAYRELAEARGAKVL 168
Query: 223 LNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEY 282
+ +VE F +P+SV I T G + +V G ++ K L+ + P+R
Sbjct: 169 THTRVEDFDISPDSVKIETANGS-YTADKLIVSMGAWNSKLLSKLN--LDIPLQPYRQVV 225
Query: 283 LLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLG 323
+ +P P + P G
Sbjct: 226 GFFESDESKYSNDIDFPGFMVEVPNGIYYGFPSFGGCGLKL 266
Score = 29.6 bits (67), Expect = 2.3
Identities = 12/49 (24%), Positives = 22/49 (44%)
Query: 417 GVKAIHSPHTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPEMV 465
AI P++G++ R E G ++ + +VE F +P+ V
Sbjct: 135 NYNAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPDSV 183
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex,
oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus
horikoshii}
Length = 382
Score = 91.5 bits (228), Expect = 3e-20
Identities = 48/242 (19%), Positives = 100/242 (41%), Gaps = 17/242 (7%)
Query: 55 PALYDVVVVGGGIVGVATAREL-KLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYK 113
P ++VV+GGGIVGV A EL K ++ ++EK + +G T + +
Sbjct: 3 PEKSEIVVIGGGIVGVTIAHELAKRGE---EVTVIEK-RFIGSGSTFRCGTGIRQ-QFND 57
Query: 114 PGTLKAKLCVEGMNLAYEYFDKR-NIPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKD 171
++ + L ++ + + +K+ G L + ++ +++ E + V
Sbjct: 58 EAN--VRVMKRSVEL-WKKYSEEYGFSFKQTGYLFLLYDDEEVKTFKRNIEIQNKFGV-P 113
Query: 172 VRLVSAEEIKTIEPYC--KGVK-AIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVE 228
+L++ EE K I P V A +P G D T + E G ++ +V+
Sbjct: 114 TKLITPEEAKEIVPLLDISEVIAASWNPTDGKADPFEATTAFAVKAKEYGAKLLEYTEVK 173
Query: 229 SFKENPESVT-ISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNP 287
F + + T +G +++ + A+ + +G + I P++ + ++ P
Sbjct: 174 GFLIENNEIKGVKTNKGI-IKTGIVVNATNAWANLINAMAGIKTKIPIEPYKHQAVITQP 232
Query: 288 AK 289
K
Sbjct: 233 IK 234
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 88.6 bits (220), Expect = 2e-19
Identities = 49/311 (15%), Positives = 106/311 (34%), Gaps = 38/311 (12%)
Query: 58 YDVVVVGGGIVGVATAREL-KLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIY---YK 113
YD++++G G VG A + + + + HQ G + G + Y
Sbjct: 3 YDLIIIGSGSVGAAAGYYATRAGL---NVLMTDA-HMPP-HQHGSHHG--DTRLIRHAYG 55
Query: 114 PGTLKAKLCVEGMNLAYEYFDK------RNIPYKKCGKLIVALNEQLEPLHDLYERSIQN 167
G L + A +D+ + + + G + + + L ++ + Q
Sbjct: 56 EGEKYVPL----VLRAQMLWDELSRHNEDDPIFVRSGVINLGPADS-TFLANVAHSAEQW 110
Query: 168 NVKDVRLVSAEEIKTIEPYCK---GVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLN 224
+ +V + A+ I P + + ++G + L + + E G N
Sbjct: 111 QL-NVEKLDAQGIMARWPEIRVPDNYIGLFETDSGFLRSELAIKTWIQLAKEAGCAQLFN 169
Query: 225 QQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLL 284
V + + + + VTI T G++ ++ A+VCAG ++ + + P R +
Sbjct: 170 CPVTAIRHDDDGVTIETADGEY-QAKKAIVCAGTWVKDLLPELP------VQPVRKVFAW 222
Query: 285 LNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFS--- 341
++ V+ + P + ++ +G + F+
Sbjct: 223 YQADGRYSVKNKFPAFTGELPNGDQYYGFPAENDALKIGKHNGGQVIHSADERVPFAEVV 282
Query: 342 --VRELFSTLR 350
E F LR
Sbjct: 283 SDGSEAFPFLR 293
Score = 30.8 bits (70), Expect = 1.0
Identities = 19/128 (14%), Positives = 41/128 (32%), Gaps = 18/128 (14%)
Query: 343 RELFSTL-----RYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRG 397
+ L+ L P F R G+ + + S +L +E+++A I
Sbjct: 68 QMLWDELSRHNEDDPIFVRSGVINLGPADSTFLANVAHSAEQWQLN--VEKLDAQGIMA- 124
Query: 398 PSGVRAQALSSSGDLVDDFGVKAIHSPHTGIVDWGLVTRVMGEEFCELGGEIRLNQQVES 457
R + + + + +G + L + + E G N V +
Sbjct: 125 ----RWPEIRVPDNYI------GLFETDSGFLRSELAIKTWIQLAKEAGCAQLFNCPVTA 174
Query: 458 FKENPEMV 465
+ + + V
Sbjct: 175 IRHDDDGV 182
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 87.5 bits (217), Expect = 6e-19
Identities = 43/288 (14%), Positives = 86/288 (29%), Gaps = 35/288 (12%)
Query: 55 PALYDVVVVGGGIVGVATAREL-KLNYPKMKICLVEKEKELGMHQ--TGHNSGVVHAGIY 111
YDVVVVGGG VG+ATA ++ + + ++ ++E+ T
Sbjct: 2 TESYDVVVVGGGPVGLATAWQVAERGH---RVLVLER-HTFFNENGGTSGAERHWRL--Q 55
Query: 112 YKPGTLKAKLCVEGMNLAYEYFDK------RNIPYKKCGKLIVA---LNEQLEPLHDLYE 162
Y L +L + R + + G L + +
Sbjct: 56 YTQEDL-FRL----TLETLPLWRALESRCERRL-IHEIGSLWFGDTDVVTNEGQISGTAA 109
Query: 163 RSIQNNVKDVRLVSAEEIKTIEPYC---KGVKAIHSPNTGIVDWGLVTRVMGEEFCELGG 219
+ +V + A +I+ + + + P+ G +D + G
Sbjct: 110 MMDKLSV-RYEWLKATDIERRFGFRGLPRDYEGFLQPDGGTIDVRGTLAALFTLAQAAGA 168
Query: 220 EIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFR 279
+R + V + + V+++T +G + ++ G +++ G A +
Sbjct: 169 TLRAGETVTELVPDADGVSVTTDRGT-YRAGKVVLACGPYTNDLLEPLG--ARLAYSVYE 225
Query: 280 GEYLLLNPAKQHLVRGNIYPVPDPNFP----FLGVHFTPRMDGSVWLG 323
A + P F G P G
Sbjct: 226 MAIAAYRQATPVTEAPFWFAFQQPTPQDTNLFYGFGHNPWAPGEFVRC 273
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 78.7 bits (194), Expect = 5e-16
Identities = 45/347 (12%), Positives = 99/347 (28%), Gaps = 46/347 (13%)
Query: 49 MSSSQSPALYDVVVVGGGIVGVATAREL-KLNYPKMKICLVEKEKELGMHQTGHN--SGV 105
M+ ++S +++VG G G +TA L + Y + +++ + + N + V
Sbjct: 1 MAVTKS---SSLLIVGAGTWGTSTALHLARRGY--TNVTVLDP-YPVPSAISAGNDVNKV 54
Query: 106 VHAGIYYKPGTLKAKLCVEGMNLAYEYFDKR---NIPYKKCGKLIVALNEQLEPLHDLYE 162
+ +G Y + ++ A+ + Y G L+ A +++
Sbjct: 55 ISSG-QYSNNKDEIEVNEILAEEAFNGWKNDPLFKPYYHDTGLLMSACSQE-GLDRLGVR 112
Query: 163 RSIQNNVKDVRLVSAEEIKTIEP-------YCKGVKAIHSPNTGIVDWGLVTRVMGEEFC 215
+ V L E+ + + P + G E
Sbjct: 113 VRPGEDPNLVELTRPEQFRKLAPEGVLQGDFPGWKGYFARSGAGWAHARNALVAAAREAQ 172
Query: 216 ELGGEIRLNQQ---VESFKENPESVT-ISTKQGDHLESSYALVCAGLQADEMALKSGCSL 271
+G + V + V T G + +CAG A +
Sbjct: 173 RMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGASAGQFL-----DF 227
Query: 272 EPAIVPFRGE--YLLLNPAKQHLVRGN-----------IYPVPDPNFPFLGVHFTPRMDG 318
+ + P ++ L P ++ L + P + + P
Sbjct: 228 KNQLRPTAWTLVHIALKPEERALYKNIPVIFNIERGFFFEPDEERGEIKICDEH-PGYTN 286
Query: 319 SVWLGPNAVLAFKKEGYRWRDFSVRELFSTL--RYPGFWRLGLKYTR 363
V +++ E + + + + L P + R
Sbjct: 287 MVQSADGTMMSIPFEKTQIPKEAETRVRALLKETMPQLADRPFSFAR 333
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate
binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A
{Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2
d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Length = 830
Score = 75.9 bits (187), Expect = 9e-15
Identities = 43/226 (19%), Positives = 86/226 (38%), Gaps = 18/226 (7%)
Query: 55 PALYDVVVVGGGIVGVATAREL-KLNYPKMKICLVEKEKELGMHQ--TGHNSGVVHAGIY 111
+ +V++G GIVG A EL + I ++++ L M T H G+V
Sbjct: 2 ASTPRIVIIGAGIVGTNLADELVTRGWN--NITVLDQ-GPLNMPGGSTSHAPGLVFQ--- 55
Query: 112 YKPGTLKAKLCVEGMNLAYEYFDKRNIP-YKKCGKLIVALN-EQLEPLHDLYERSIQNNV 169
P A + + + + + G L VA +L L + +
Sbjct: 56 TNPSKTMASFAKYTVEK-LLSLTEDGVSCFNQVGGLEVATTETRLADLKRKLGYAAAWGI 114
Query: 170 KDVRLVSAEEIKTIEPYC--KGVK-AIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQ 226
+ RL+S E + + P + + +H P+ G+ +++ + G R +
Sbjct: 115 -EGRLLSPAECQELYPLLDGENILGGLHVPSDGLASAARAVQLLIKRTESAGVTYRGSTT 173
Query: 227 VESFKENPESVT-ISTKQGDHLESSYALVCAGLQADEMALKSGCSL 271
V +++ VT + T G + + + CAG ++ G ++
Sbjct: 174 VTGIEQSGGRVTGVQTADGV-IPADIVVSCAGFWGAKIGAMIGMAV 218
Score = 31.6 bits (72), Expect = 0.74
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 7 PTLYDMVVVGGGIVGVATAREL 28
+ +V++G GIVG A EL
Sbjct: 2 ASTPRIVIIGAGIVGTNLADEL 23
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: ADP;
2.40A {Deinococcus radiodurans R1}
Length = 405
Score = 69.3 bits (168), Expect = 7e-13
Identities = 42/301 (13%), Positives = 83/301 (27%), Gaps = 31/301 (10%)
Query: 33 PKMKTCLVEKEKEFFSMSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92
P T + + + +D+VV+G G +G A A L+ P + LVE+
Sbjct: 12 PPDPTPPRRAGSVWAHVGQHFTEEAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGG 71
Query: 93 ELGMHQ-TGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALN 151
T GV A P +A+ L + + + L +
Sbjct: 72 LPNEEGATILAPGVWTA--QDIPAGQEAQAEWTREQLLGALGSGKTLEVEDRPLLHLLPA 129
Query: 152 EQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMG 211
+ L + + L+ + A P G + +
Sbjct: 130 GEGSGLTPTLDALADFPEA-LALLDPARLPV---------ARVDPRALTYRPGSLALLAA 179
Query: 212 EEFCELGGEIRLNQQVESFK--ENPESVTIS------TKQGDHLESSYALVCAGLQADEM 263
++ G + LN + E +T++ + + + +V AG +
Sbjct: 180 QQAIGQGAGLLLNTRAELVPGGVRLHRLTVTNTHQIVVHETRQIRAGVIIVAAGAAGPAL 239
Query: 264 ALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLG 323
+ +R L + P G+ P+ G +
Sbjct: 240 VEQGLGLHTRHGRAYRQFPRLDLLSGAQT----------PVLRASGLTLRPQNGGYTLVP 289
Query: 324 P 324
Sbjct: 290 A 290
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein;
HET: AHZ; 2.70A {Neurospora crassa}
Length = 344
Score = 60.5 bits (146), Expect = 4e-10
Identities = 39/259 (15%), Positives = 76/259 (29%), Gaps = 61/259 (23%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTL 117
D+V+VG G G++ A L P ++I +VE G G + G L
Sbjct: 80 TDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPG-------------GGAWLGGQL 126
Query: 118 KAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSA 177
+ + + A + D+ +PY+ G +V + +A
Sbjct: 127 FSAMVMR--KPADVFLDEVGVPYEDEGDYVVVKH------------------------AA 160
Query: 178 EEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKE----- 232
T+ K + PN + + V ++ + + + E +
Sbjct: 161 LFTSTVLS-----KVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAG 215
Query: 233 ---NPESVTISTKQGDH-----LESSYALVCAGLQADEMA-LKSGCSLEPAIVPFRGE-Y 282
N V++ + + + G A + G
Sbjct: 216 VVTNWTLVSMHHDDQSAMDPNTINAPVIISTTGHDGPFGAFSVKRLVSMKQMERLNGMRG 275
Query: 283 LLLNPAKQHLVR--GNIYP 299
L + A+ +V I P
Sbjct: 276 LDMQSAEDAIVNNTREIVP 294
Score = 42.1 bits (98), Expect = 3e-04
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 10 YDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFFSMS 50
D+V+VG G G++ A L P ++ +VE +
Sbjct: 80 TDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGA 120
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase
type II family, thiazole synthase, mitochondria DNA
repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP:
c.3.1.6 PDB: 3fpz_A*
Length = 326
Score = 56.7 bits (136), Expect = 5e-09
Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 20/159 (12%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTL 117
DV++VG G G++ A + N P +K+C++E G G + G L
Sbjct: 66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPG-------------GGSWLGGQL 112
Query: 118 KAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSA 177
+ + + A+ + + IPY+ G +V + L L + NVK
Sbjct: 113 FSAMVMRKP--AHLFLQELEIPYEDEGDYVVVKHAALFISTVLSKVLQLPNVKLFNATCV 170
Query: 178 EEIKTIEPYCKGVKAIHSPNTGIV-DWGLVTRVMGEEFC 215
E++ T P KG + G+V +W LVT+ G + C
Sbjct: 171 EDLVTRPPTEKGEVTV----AGVVTNWTLVTQAHGTQCC 205
Score = 43.6 bits (102), Expect = 9e-05
Identities = 12/53 (22%), Positives = 23/53 (43%)
Query: 10 YDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFFSMSSSQSPALYDVVV 62
D+++VG G G++ A + P +K C++E S +V+
Sbjct: 66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVM 118
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing
protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium
toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A*
1c0k_A*
Length = 363
Score = 55.8 bits (134), Expect = 1e-08
Identities = 51/285 (17%), Positives = 93/285 (32%), Gaps = 58/285 (20%)
Query: 49 MSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHA 108
+ VVV+G G++G+++A L + I ++L + A
Sbjct: 1 LMMHSQK---RVVVLGSGVIGLSSALILARKGYSVHIL----ARDLPEDVSSQTFASPWA 53
Query: 109 GIYYKP------GTLKAKLCVEGMNLAYEYFDK---RNIPYKKCGKLIVALNEQLEPLHD 159
G + P G +AK ++ + + G A NE H
Sbjct: 54 GANWTPFMTLTDGPRQAKWEES----TFKKWVELVPTGHAMWLKGTRRFAQNEDGLLGHW 109
Query: 160 LYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGG 219
+ + R + + E P GV + +T V + + E +LG
Sbjct: 110 YKDI-----TPNYRPLPSSE---CPPGAIGV----TYDTLSVHAPKYCQYLARELQKLGA 157
Query: 220 EIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFR 279
+ V S ++ + + + GL A +A + A P R
Sbjct: 158 TFE-RRTVTSLEQAFDGADL------------VVNATGLGAKSIAG----IDDQAAEPIR 200
Query: 280 GEYLLL-NPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLG 323
G+ +L+ +P K+ + + DP + PR G V G
Sbjct: 201 GQTVLVKSPCKRCTMDSS-----DPAS---PAYIIPRPGGEVICG 237
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET:
FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A*
2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A*
1kif_A* 1an9_A* 1evi_A*
Length = 351
Score = 54.7 bits (131), Expect = 2e-08
Identities = 43/269 (15%), Positives = 91/269 (33%), Gaps = 37/269 (13%)
Query: 60 VVVVGGGIVGVATARELKLNYPKMKICLVEK--EKELGMHQTGHNSGVVHAGIYYKPGTL 117
VVV+G G++G++TA + Y + L K T + + P
Sbjct: 3 VVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAAGLWQPYLSDPNNP 62
Query: 118 KAKLCVEGMNLAYEYFDK--RNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLV 175
+ + ++Y + + G +++ + + S ++ V R +
Sbjct: 63 QEADWSQ---QTFDYLLSHVHSPNAENLGLFLISGYNLFH--EAIPDPSWKDTVLGFRKL 117
Query: 176 SAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPE 235
+ E+ + I++ + + E E G + ++VESF+E
Sbjct: 118 TPREL----DMFPDYGYGWFHTSLILEGKNYLQWLTERLTERGVKFF-QRKVESFEEV-- 170
Query: 236 SVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLL-NPAKQHLVR 294
+ + C G+ A + +P + P RG+ + + P +H +
Sbjct: 171 ---------AREGADVIVNCTGVWAGALQ------RDPLLQPGRGQIMKVDAPWMKHFIL 215
Query: 295 GNIYPVPDPNFPFLGVHFTPRMDGSVWLG 323
+ N P++ P V LG
Sbjct: 216 THDPERGIYNSPYI----IPGTQT-VTLG 239
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG
FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8
d.58.1.6 PDB: 2gmj_A*
Length = 584
Score = 46.7 bits (111), Expect = 1e-05
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 58 YDVVVVGGGIVGVATARELK----LNYPKMKICLVEKEKELGMHQTGHNSGVV 106
DVV+VG G G++ A LK + +++CLVEK +G H SG
Sbjct: 36 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTL---SGAC 85
Score = 34.8 bits (80), Expect = 0.065
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 10 YDMVVVGGGIVGVATARELK----LKYPKMKTCLVEKEKEFFSMSSS 52
D+V+VG G G++ A LK ++ CLVEK + + S
Sbjct: 36 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLS 82
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for
structural genomics, JCSG, protein structure INI PSI-2;
HET: FAD; 2.06A {Exiguobacterium sibiricum}
Length = 475
Score = 45.4 bits (107), Expect = 3e-05
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKEL-GMHQTGHNSGVV 106
+V+VGGGI G+A A + +P + I L+E + L G T G
Sbjct: 5 KRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYREDGFT 54
Score = 36.9 bits (85), Expect = 0.013
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 10 YDMVVVGGGIVGVATARELKLKYPKMKTCLVEKE 43
+V+VGGGI G+A A + +P + L+E
Sbjct: 5 KRLVIVGGGITGLAAAYYAERAFPDLNITLLEAG 38
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 1e-04
Identities = 73/489 (14%), Positives = 122/489 (24%), Gaps = 220/489 (44%)
Query: 106 VHAGIYYKPGTLKAKLCVEGMNLAYEYFDKR---NIPYKKCGK--LIVALNE-------- 152
+HA L V+ L Y R P+ K L A+ E
Sbjct: 101 IHALAAKLLQENDTTL-VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI 159
Query: 153 ---Q------LEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDW 203
Q E L DLY+ V D+ SAE + + + + + I++W
Sbjct: 160 FGGQGNTDDYFEELRDLYQTY-HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW 218
Query: 204 -----------------------GLV--------TRVMG---EEFCE-LGGEIRLNQQV- 227
G++ +++G E L G +Q +
Sbjct: 219 LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV 278
Query: 228 -----------ESFKEN------------------------PESVTISTKQGDHLESSYA 252
ESF + P S+ + + + S
Sbjct: 279 TAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM 338
Query: 253 LVCAGLQADE-------------------MALK--------SG-----CSLEPAI----- 275
L + L ++ ++L SG L +
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA 398
Query: 276 --------VPFRGE-------YL---------LLNPA----KQHLVRGNI-YPVPDPNFP 306
+PF +L LL PA + LV+ N+ + D P
Sbjct: 399 PSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP 458
Query: 307 FLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFS---VRELFSTL-RYPGFWRLGLKYT 362
V+ T +G R S + + R P W ++
Sbjct: 459 ---VYDT------------------FDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFK 497
Query: 363 RYGSKEMIMSWF----P------SMRVNELKQ--YIEEIEAGDIQRGPSGVRAQALSSSG 410
+ P + + K + I AG + P
Sbjct: 498 --------ATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPD----------- 538
Query: 411 DLVDDFGVK 419
DD+G K
Sbjct: 539 ---DDYGFK 544
Score = 37.7 bits (87), Expect = 0.009
Identities = 19/95 (20%), Positives = 42/95 (44%), Gaps = 17/95 (17%)
Query: 10 YDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEF-----FSMSSSQSPALYDVVVVG 64
Y M+ + G V + ++E L+Y + + ++ +++ + Q V
Sbjct: 1807 YGMIAINPGRVAASFSQE-ALQY--VVERVGKRTGWLVEIVNYNVENQQ-------YVAA 1856
Query: 65 GGIVGVATARELKLNYPK-MKICLVEKEKELGMHQ 98
G + + T + LN+ K KI ++E +K L + +
Sbjct: 1857 GDLRALDTVTNV-LNFIKLQKIDIIELQKSLSLEE 1890
Score = 36.6 bits (84), Expect = 0.020
Identities = 52/294 (17%), Positives = 85/294 (28%), Gaps = 129/294 (43%)
Query: 210 MGEEFCE-------------------LGGEIRLNQQVESFKENPESVTI--STKQGDHLE 248
MG + + G I ++ NP ++TI ++G +
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSI-----LDIVINNPVNLTIHFGGEKGKRIR 1685
Query: 249 SSY-ALVCAGLQADEMALKSGCSLEPAI---------VPFRGEYLLLN------PAKQHL 292
+Y A++ E + E FR E LL+ PA L
Sbjct: 1686 ENYSAMIF------ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPA---L 1736
Query: 293 V------------RGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDF 340
+G I P F G H S LG A LA +
Sbjct: 1737 TLMEKAAFEDLKSKGLI---PADAT-FAG-H-------S--LGEYAALASLADV-----M 1777
Query: 341 SVRELFSTLRYPGFW------RLGLKYTRYGSKEMI------MSWFPSMRVNELKQYIEE 388
S+ L + Y G R L + YG MI ++ S L+ +E
Sbjct: 1778 SIESLVEVVFYRGMTMQVAVPRDELGRSNYG---MIAINPGRVA--ASFSQEALQYVVER 1832
Query: 389 IE---------------------AGDIQRGPSGVRAQALSSSGDLVDDFGVKAI 421
+ AGD+ +AL + ++++ ++ I
Sbjct: 1833 VGKRTGWLVEIVNYNVENQQYVAAGDL---------RALDTVTNVLNFIKLQKI 1877
Score = 31.9 bits (72), Expect = 0.60
Identities = 38/250 (15%), Positives = 75/250 (30%), Gaps = 89/250 (35%)
Query: 5 QSPTLYDMVVVGGGIVGVATARELKLKYPKM--KTCL---VEKEKEFFSMSSSQS----- 54
+P ++ + GG G + ++ Y M +T + ++ EK F ++ +
Sbjct: 1667 NNPV--NLTIHFGGEKG----KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR 1720
Query: 55 -------------PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQT-- 99
PAL ++ A +LK G+
Sbjct: 1721 SEKGLLSATQFTQPALT--------LMEKAAFEDLK---------------SKGLIPADA 1757
Query: 100 ---GHNS-G-----VVHAGIY---------YKPGTLKAKLCVEGMNLAYEYFDKRNIPYK 141
GH S G A + + G Y P
Sbjct: 1758 TFAGH-SLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINP-- 1814
Query: 142 KCGKLIVALNEQLEPLHDLYER---------SIQN-NVKDVRLVSAEEIKTIEPYCKGVK 191
G++ + ++ E L + ER I N NV++ + V+A +++ ++ +
Sbjct: 1815 --GRVAASFSQ--EALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLN 1870
Query: 192 AIHSPNTGIV 201
I I+
Sbjct: 1871 FIKLQKIDII 1880
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO,
variegate porphyria disease, VP
oxidoreductase-oxidoreductase inhibitor complex; HET:
ACJ FAD; 1.90A {Homo sapiens}
Length = 477
Score = 42.4 bits (99), Expect = 2e-04
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95
VVV+GGGI G+A + L K+ LVE + LG
Sbjct: 4 TVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLG 40
Score = 34.7 bits (79), Expect = 0.063
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 13 VVVGGGIVGVATARELKLKYPKMKTCLVEKE 43
VV+GGGI G+A + L K LVE
Sbjct: 6 VVLGGGISGLAASYHLSRAPCPPKVVLVESS 36
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding,
para-hydroxy-benzoate-hydroxylase fold (PHBH- fold),
monotopic membrane-binding domain; HET: FAD OMN TON;
2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Length = 504
Score = 41.7 bits (97), Expect = 4e-04
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 50 SSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95
+ + V V+G G+ G+A A +LK+ + + + E E + G
Sbjct: 6 GEDKHSSAKRVAVIGAGVSGLAAAYKLKI--HGLNVTVFEAEGKAG 49
Score = 33.2 bits (75), Expect = 0.17
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 2 SSSQSPTLYDMVVVGGGIVGVATARELK 29
+ + + V+G G+ G+A A +LK
Sbjct: 6 GEDKHSSAKRVAVIGAGVSGLAAAYKLK 33
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.1 bits (98), Expect = 4e-04
Identities = 59/448 (13%), Positives = 122/448 (27%), Gaps = 150/448 (33%)
Query: 26 RELKLKYPKMKTCL-----VEKEKEF--FSMSS-----SQSPALYDVVVVGGGIVGVATA 73
R L LK + CL V+ K + F++S ++ + D + AT
Sbjct: 235 RRL-LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL-------SAATT 286
Query: 74 RELKLNYPKMKICLVEKEKE------LGM------HQTGHNSGVVHAGIYYKPGTLKAKL 121
+ L+ + L E + L + + + I A+
Sbjct: 287 THISLD--HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII--------AES 336
Query: 122 CVEGMNLAYEYFDKRNIPYKKCGKLIVALNEQLEP--LHDLYER-SI-QNNVKDVRLVSA 177
+G+ ++ + N K +I + LEP +++R S+ + +
Sbjct: 337 IRDGLAT-WDNWKHVN--CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH----IPT 389
Query: 178 EEIKTIEPYCKGVKAIHSPNTGIVDWG-LVTRVMGEEFCELGGEIRLNQQVESFKENPES 236
+ W ++ + +L + ++ P+
Sbjct: 390 ---ILLSLI----------------WFDVIKSDVMVVVNKL-------HKYSLVEKQPKE 423
Query: 237 VTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGN 296
TIS + S Y + ++ + +L +IV Y + +
Sbjct: 424 STIS------IPSIYLELK--VKLENEY-----ALHRSIV---DHYNIPKTFDSD----D 463
Query: 297 IYPVPDPN--FPFLGVHF-TPRMDGSVWLGPNAVLAF-------KKEGYRWRDF-SVREL 345
+ P + +G H + L L F + + W S+
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT 523
Query: 346 FSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQA 405
L+ Y Y VN + ++ +IE
Sbjct: 524 LQQLK---------FYKPYICDN---DPKYERLVNAILDFLPKIEE-------------- 557
Query: 406 LSSSGDLVDDFGVKAIHSPHTGIVDWGL 433
I S +T ++ L
Sbjct: 558 -------------NLICSKYTDLLRIAL 572
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 41.4 bits (96), Expect = 5e-04
Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 48 SMSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95
+++ + DV+V+G G G+ A+ L +V+ + G
Sbjct: 1 AIAMTHPDISVDVLVIGAGPTGLGAAKRLN-QIDGPSWMIVDSNETPG 47
Score = 35.6 bits (81), Expect = 0.037
Identities = 8/45 (17%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 1 MSSSQSPTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKE 45
++ + D++V+G G G+ A+ L + +V+ +
Sbjct: 2 IAMTHPDISVDVLVIGAGPTGLGAAKRLN-QIDGPSWMIVDSNET 45
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm,
FAD, flavoprotein, oxidoreductase, porphyrin
biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Length = 470
Score = 41.1 bits (96), Expect = 5e-04
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 49 MSSSQSPALYDVVVVGGGIVGVATAREL----KLNYPKMKICLVEKEKELG 95
MS + VV++GGGI G+A A + K +++ LVE +G
Sbjct: 1 MSDGK----KHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVG 47
Score = 33.4 bits (76), Expect = 0.15
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Query: 1 MSSSQSPTLYDMVVVGGGIVGVATARELKLKYPK----MKTCLVEKE 43
MS + +V++GGGI G+A A ++ + + ++ LVE
Sbjct: 1 MSDGK----KHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEAS 43
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD;
1.75A {Pseudomonas aeruginosa}
Length = 399
Score = 41.1 bits (97), Expect = 6e-04
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEK 90
DV++ G GI G A L ++ +VE+
Sbjct: 7 IDVLINGCGIGGAMLAYLLGRQ--GHRVVVVEQ 37
Score = 36.1 bits (84), Expect = 0.019
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 6 SPTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEK 42
+ D+++ G GI G A L + + +VE+
Sbjct: 3 TDNHIDVLINGCGIGGAMLAYLLGRQ--GHRVVVVEQ 37
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 40.6 bits (95), Expect = 9e-04
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 8/64 (12%)
Query: 49 MSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHA 108
MS S+ + ++G G G+A L+ ++E+ +G G +
Sbjct: 1 MSISKDS---RIAIIGAGPAGLAAGMYLEQAGFH-DYTILERTDHVG----GKCHSPNYH 52
Query: 109 GIYY 112
G Y
Sbjct: 53 GRRY 56
Score = 32.9 bits (75), Expect = 0.24
Identities = 6/31 (19%), Positives = 7/31 (22%)
Query: 216 ELGGEIRLNQQVESFKENPESVTISTKQGDH 246
L N + V I T D
Sbjct: 215 TLEHPAERNVDITRITREDGKVHIHTTDWDR 245
Score = 31.4 bits (71), Expect = 0.65
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 1 MSSSQSPTLYDMVVVGGGIVGVATARELK 29
MS S+ + ++G G G+A L+
Sbjct: 1 MSISKDS---RIAIIGAGPAGLAAGMYLE 26
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 40.4 bits (95), Expect = 0.001
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 58 YDVVVVGGGIVGVATAREL-KLNYPKMKICLVEKEKELG 95
YDV+VVGGG G AR K K ++EK E+G
Sbjct: 5 YDVLVVGGGPGGSTAARYAAKYGL---KTLMIEKRPEIG 40
Score = 36.9 bits (86), Expect = 0.011
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 10 YDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEF 46
YD++VVGGG G AR +KT ++EK E
Sbjct: 5 YDVLVVGGGPGGSTAARYAAKY--GLKTLMIEKRPEI 39
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB:
2ive_A*
Length = 478
Score = 40.0 bits (93), Expect = 0.001
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 50 SSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95
+V VVGGGI G+A A L+ L+E LG
Sbjct: 9 HHMPRTTGMNVAVVGGGISGLAVAHHLRSRGT--DAVLLESSARLG 52
Score = 33.8 bits (77), Expect = 0.11
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 2 SSSQSPTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKE 43
T ++ VVGGGI G+A A L+ + L+E
Sbjct: 9 HHMPRTTGMNVAVVGGGISGLAVAHHLRSRGT--DAVLLESS 48
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 39.7 bits (92), Expect = 0.002
Identities = 11/55 (20%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 41 EKEKEFFSMSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95
E+ ++ + + Q +D ++VG G G A L + ++ +V++ +G
Sbjct: 13 ERTEQTNTTNEQQESKGFDYLIVGAGFAGSVLAERLASS--GQRVLIVDRRPHIG 65
Score = 33.6 bits (76), Expect = 0.12
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 10 YDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKE 45
+D ++VG G G A L + +V++
Sbjct: 30 FDYLIVGAGFAGSVLAERLASS--GQRVLIVDRRPH 63
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 39.8 bits (92), Expect = 0.002
Identities = 41/292 (14%), Positives = 99/292 (33%), Gaps = 52/292 (17%)
Query: 51 SSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG---MHQTGHNSGVVH 107
++ SPA V+++G GI G+ A L N + ++E +G TG+
Sbjct: 2 NTVSPAKKKVIIIGAGIAGLKAASTLHQNGIQ-DCLVLEARDRVGGRLQTVTGYQGRKYD 60
Query: 108 AGIYYKPGT-------LKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNEQLEPLHD- 159
G + T +A+L + + + D I + + E L + D
Sbjct: 61 IGASWHHDTLTNPLFLEEAQLSLNDGRTRFVFDDDNFIYIDEERGRVDHDKELLLEIVDN 120
Query: 160 --------------------LYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTG 199
++ ++ ++ + ++ ++I+ + C+ ++ H +
Sbjct: 121 EMSKFAELEFHQHLGVSDCSFFQLVMKYLLQRRQFLTNDQIRYLPQLCRYLELWHGLDWK 180
Query: 200 IVDWGLVTRVMGEEFCELGG---------------EIRLNQQVESFKENP-ESVTISTKQ 243
++ ++L+ +V+S P ++VT++ +
Sbjct: 181 LLSAKDTYFGHQGRNAFALNYDSVVQRIAQSFPQNWLKLSCEVKSITREPSKNVTVNCED 240
Query: 244 GDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRG 295
G + Y ++ ++++ +L I F+ L P Q
Sbjct: 241 GTVYNADYVIITVPQSVLNLSVQPEKNLRGRIE-FQPP---LKPVIQDAFDK 288
Score = 35.2 bits (80), Expect = 0.053
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 3 SSQSPTLYDMVVVGGGIVGVATARELK 29
++ SP ++++G GI G+ A L
Sbjct: 2 NTVSPAKKKVIIIGAGIAGLKAASTLH 28
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase;
HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 39.4 bits (92), Expect = 0.002
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 57 LYDVVVVGGGIVGVATARELK 77
+YD +VVGGG G+ AR+L
Sbjct: 1 MYDAIVVGGGFSGLKAARDLT 21
Score = 35.2 bits (81), Expect = 0.042
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 9 LYDMVVVGGGIVGVATARELK 29
+YD +VVGGG G+ AR+L
Sbjct: 1 MYDAIVVGGGFSGLKAARDLT 21
Score = 33.6 bits (77), Expect = 0.14
Identities = 9/44 (20%), Positives = 19/44 (43%)
Query: 212 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVC 255
+ + EIRL V ++ + V ++ K G ++ +V
Sbjct: 211 DAMSQEIPEIRLQTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVA 254
>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding
subunit); electron transport(flavocytochrome); HET: FAD
HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5
c.3.1.5 d.87.1.1
Length = 401
Score = 39.4 bits (92), Expect = 0.002
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 60 VVVVGGGIVGVATARELKLNYPKMKICLVEKEKE 93
VVVVGGG G A+ +KL P +++ L+E +
Sbjct: 5 VVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD 38
Score = 37.4 bits (87), Expect = 0.008
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 13 VVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFFS 48
VVVGGG G A+ +KL P ++ L+E ++++
Sbjct: 6 VVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYT 41
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 39.1 bits (92), Expect = 0.003
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 49 MSSSQSPALYDVVVVGGGIVGVATAREL-KLNYPKMKICLVEKEKELG 95
MS+ D VV+G G+ G+ A + + K+ +E +++G
Sbjct: 1 MSNRAKSPALDAVVIGAGVTGIYQAFLINQAGM---KVLGIEAGEDVG 45
Score = 32.9 bits (76), Expect = 0.20
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 1 MSSSQSPTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEF 46
MS+ D VV+G G+ G+ A + MK +E ++
Sbjct: 1 MSNRAKSPALDAVVIGAGVTGIYQAF--LINQAGMKVLGIEAGEDV 44
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 39.1 bits (90), Expect = 0.003
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 4/49 (8%)
Query: 47 FSMSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95
+M+ + +V++G G G+ A L K L E G
Sbjct: 2 IAMAELLT---PKIVIIGAGPTGLGAAVRLTELGYK-NWHLYECNDTPG 46
Score = 31.4 bits (70), Expect = 0.78
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 1 MSSSQSPTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKE 45
M+ + +V++G G G+ A L + L E
Sbjct: 4 MAELLT---PKIVIIGAGPTGLGAAVRLT-ELGYKNWHLYECNDT 44
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex,
biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis
thaliana} SCOP: c.3.1.6
Length = 284
Score = 38.5 bits (89), Expect = 0.003
Identities = 35/165 (21%), Positives = 65/165 (39%), Gaps = 25/165 (15%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTL 117
DVVVVG G G++ A E+ N P +++ ++E+ G G + G L
Sbjct: 40 TDVVVVGAGSAGLSAAYEISKN-PNVQVAIIEQSVSPG-------------GGAWLGGQL 85
Query: 118 KAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSA 177
+ + V A+ + D+ + Y + +V + L + + + NVK V+A
Sbjct: 86 FSAMIVRKP--AHLFLDEIGVAYDEQDTYVVVKHAALFTSTIMSKLLARPNVKLFNAVAA 143
Query: 178 EEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIR 222
E++ GV + +W LV + + C +
Sbjct: 144 EDLIVKGNRVGGV---------VTNWALVAQNHHTQSCMDPNVME 179
Score = 32.0 bits (72), Expect = 0.32
Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 22/115 (19%)
Query: 10 YDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFFSMSSSQSPALYDVVVVGGGIVG 69
D+VVVG G G++ A E+ K P ++ ++E+ GGG
Sbjct: 40 TDVVVVGAGSAGLSAAYEIS-KNPNVQVAIIEQSVS-----------------PGGGAWL 81
Query: 70 VATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVE 124
+ ++ E+G+ ++ VV T+ +KL
Sbjct: 82 GGQ----LFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAALFTSTIMSKLLAR 132
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.30A {Chromobacterium violaceum
atcc 12472}
Length = 381
Score = 38.6 bits (89), Expect = 0.003
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 60 VVVVGGGIVGVATARELKLNYPKMKICLVEKEKEL 94
++V+G G G+ A +LK P I +VEK E
Sbjct: 3 ILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ 37
Score = 34.0 bits (77), Expect = 0.10
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 13 VVVGGGIVGVATARELKLKYPKMKTCLVEKEKEF 46
+V+G G G+ A +LK P +VEK E
Sbjct: 4 LVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ 37
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase;
HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Length = 493
Score = 39.0 bits (91), Expect = 0.003
Identities = 11/47 (23%), Positives = 25/47 (53%)
Query: 48 SMSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKEL 94
+ ++P+ +++GGG A AR ++ P ++ +V ++ EL
Sbjct: 2 EVPQDKAPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL 48
Score = 32.8 bits (75), Expect = 0.25
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 1 MSSSQSPTLYDMVVVGGGIVGVATAREL 28
+ ++P+ +++GGG A AR +
Sbjct: 3 VPQDKAPSHVPFLLIGGGTAAFAAARSI 30
Score = 31.6 bits (72), Expect = 0.53
Identities = 14/75 (18%), Positives = 30/75 (40%), Gaps = 9/75 (12%)
Query: 208 RVMGEEFCEL--------GGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ 259
+++ E G ++ N V+S + + I K G +E+ + + GL+
Sbjct: 222 KILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLE 281
Query: 260 -ADEMALKSGCSLEP 273
E+A G ++
Sbjct: 282 PNVELAKTGGLEIDS 296
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 38.5 bits (89), Expect = 0.004
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95
YD ++VG G+ G A ELK K+ ++EK +G
Sbjct: 2 YDYIIVGSGLFGAVCANELKKL--NKKVLVIEKRNHIG 37
Score = 33.1 bits (75), Expect = 0.19
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 10 YDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKE 45
YD ++VG G+ G A ELK K ++EK
Sbjct: 2 YDYIIVGSGLFGAVCANELKKL--NKKVLVIEKRNH 35
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 37.5 bits (87), Expect = 0.007
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 58 YDVVVVGGGIVGVATAREL-KLNYPKMKICLVEKEKE 93
YDV+++GGG G + A +L + KI LV+ +
Sbjct: 7 YDVLIIGGGFAGSSAAYQLSRRGL---KILLVDSKPW 40
Score = 34.0 bits (78), Expect = 0.091
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 10 YDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKE 45
YD++++GGG G + A +L + +K LV+ +
Sbjct: 7 YDVLIIGGGFAGSSAAYQLSRR--GLKILLVDSKPW 40
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase,
inhibitor binding, rasagiline, enantioselectivity,
oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens}
SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A*
1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A*
2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A*
2v60_A* 2v61_A* 2vrl_A* ...
Length = 520
Score = 37.5 bits (87), Expect = 0.008
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 5/29 (17%)
Query: 49 MSSSQSPALYDVVVVGGGIVGVATARELK 77
MS+ DVVVVGGGI G+A A+ L
Sbjct: 1 MSNK-----CDVVVVGGGISGMAAAKLLH 24
Score = 37.1 bits (86), Expect = 0.013
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 216 ELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALV 254
LG ++L + V + E+V + T + E+ Y +
Sbjct: 224 LLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVIS 262
Score = 33.7 bits (77), Expect = 0.13
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 5/29 (17%)
Query: 1 MSSSQSPTLYDMVVVGGGIVGVATARELK 29
MS+ D+VVVGGGI G+A A+ L
Sbjct: 1 MSNK-----CDVVVVGGGISGMAAAKLLH 24
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 37.6 bits (87), Expect = 0.009
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Query: 49 MSSSQSPALYDVVVVGGGIVGVATAREL-KLNYPKMKICLVEKEK 92
MS+ P ++D++V+GGG G A + + ++ L+E+E
Sbjct: 1 MSTR--PEVFDLIVIGGGPGGSTLASFVAMRGH---RVLLLEREA 40
Score = 33.0 bits (75), Expect = 0.21
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 1 MSSSQSPTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEK 44
MS+ P ++D++V+GGG G A + ++ + L+E+E
Sbjct: 1 MSTR--PEVFDLIVIGGGPGGSTLASFVAMR--GHRVLLLEREA 40
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride
transfer mechanism, GR2-family, flavoenzyme, FAD
containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB:
2jb1_A* 2jb2_A* 2jb3_A*
Length = 489
Score = 37.6 bits (87), Expect = 0.009
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 58 YDVVVVGGGIVGVATARELK 77
+ VVV+GGG G+ +A EL+
Sbjct: 12 HSVVVLGGGPAGLCSAFELQ 31
Score = 32.9 bits (75), Expect = 0.22
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 10 YDMVVVGGGIVGVATARELK 29
+ +VV+GGG G+ +A EL+
Sbjct: 12 HSVVVLGGGPAGLCSAFELQ 31
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD
BCN; 2.25A {Mycobacterium tuberculosis}
Length = 399
Score = 37.1 bits (85), Expect = 0.010
Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95
+D+ VVG G G+ A + K ++ ++E+ +G
Sbjct: 8 FDLFVVGSGFFGLTIAERVATQLDK-RVLVLERRPHIG 44
Score = 32.4 bits (73), Expect = 0.29
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 10 YDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKE 45
+D+ VVG G G+ A + + K + ++E+
Sbjct: 8 FDLFVVGSGFFGLTIAERVATQLDK-RVLVLERRPH 42
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 37.3 bits (86), Expect = 0.010
Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 4/59 (6%)
Query: 35 MKTCLVEKEKEFFSMSSSQSPALYDVVVVGGGIVGVATAREL-KLNYPKMKICLVEKEK 92
M + + V ++GGG G L KL + + + E+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMTRSKVAIIGGGPAGSVAGLTLHKLGH---DVTIYERSA 56
Score = 32.6 bits (74), Expect = 0.27
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 2/44 (4%)
Query: 1 MSSSQSPTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEK 44
+ T + ++GGG G L L + E+
Sbjct: 15 VPRGSHMTRSKVAIIGGGPAGSVAG--LTLHKLGHDVTIYERSA 56
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A
{Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A*
2yg7_A* 3rha_A*
Length = 453
Score = 37.0 bits (86), Expect = 0.012
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 58 YDVVVVGGGIVGVATARELK 77
DV +VG G G+A A L+
Sbjct: 6 RDVAIVGAGPSGLAAATALR 25
Score = 34.3 bits (79), Expect = 0.093
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 216 ELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVC 255
LG ++ LN V + K N T+ +E+S ++
Sbjct: 224 ALGDDVFLNAPVRTVKWNESGATVLADGDIRVEASRVILA 263
Score = 33.6 bits (77), Expect = 0.16
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 7 PTL-YDMVVVGGGIVGVATARELK 29
PTL D+ +VG G G+A A L+
Sbjct: 2 PTLQRDVAIVGAGPSGLAAATALR 25
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES
protein structure initiative, northeast structural
genomics consortium; HET: FAD; 2.60A {Cytophaga
hutchinsonii}
Length = 421
Score = 36.7 bits (85), Expect = 0.014
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Query: 49 MSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92
M + DV+V+G G G A + + K+ +VEK+K
Sbjct: 1 MQREK----VDVLVIGAGPAGTVAASLVNKS--GFKVKIVEKQK 38
Score = 32.8 bits (75), Expect = 0.26
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 6/44 (13%)
Query: 1 MSSSQSPTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEK 44
M + D++V+G G G A + K +VEK+K
Sbjct: 1 MQREK----VDVLVIGAGPAGTVAASLVNKS--GFKVKIVEKQK 38
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent
N-hydroxylating monooxygenase, CLAS flavin dependent
monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A
{Pseudomonas aeruginosa} PDB: 3s61_A*
Length = 463
Score = 36.6 bits (84), Expect = 0.015
Identities = 9/50 (18%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 51 SSQSPALYDVVVVGGGIVGVATA---RELKLNYPKMKICLVEKEKELGMH 97
++ + ++D++ VG G +A A +E +++ ++K+ + H
Sbjct: 24 ATATAVVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWH 73
Score = 33.5 bits (76), Expect = 0.13
Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 3 SSQSPTLYDMVVVGGGIVGVATA---RELKLKYPKMKTCLVEKEKEF-------FSMSSS 52
++ + ++D++ VG G +A A +E ++ ++K+ ++ S S
Sbjct: 24 ATATAVVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSEL 83
Query: 53 QSPALYDVV 61
Q L D+V
Sbjct: 84 QISFLKDLV 92
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin
contain oxidoreductase, monoamine oxidase, NAD,
extracellular, oxidoreductase; HET: FAD; 2.50A {Homo
sapiens}
Length = 342
Score = 36.3 bits (82), Expect = 0.017
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 57 LYDVVVVGGGIVGVATAREL-KLNYPKMKICLVEKEKELG 95
+ V++VG G+ G A L + + + + +K + G
Sbjct: 1 MAQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSG 40
Score = 29.7 bits (65), Expect = 1.9
Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 9 LYDMVVVGGGIVGVATAREL-KLKYPKMKTCLVEK 42
+ +++VG G+ G A L + + + +K
Sbjct: 1 MAQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDK 35
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 36.2 bits (83), Expect = 0.018
Identities = 7/39 (17%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 58 YDVVVVGGGIVGVATAREL-KLNYPKMKICLVEKEKELG 95
+++VG G G R+L + + ++ ++++ +G
Sbjct: 4 KKILIVGAGFSGAVIGRQLAEKGH---QVHIIDQRDHIG 39
Score = 31.6 bits (71), Expect = 0.57
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 10 YDMVVVGGGIVGVATARELKLKYPKMKTCLV-EKEKE 45
+++VG G G R+L K + ++
Sbjct: 4 KKILIVGAGFSGAVIGRQLAE---KGHQVHIIDQRDH 37
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein,
oxidoreductase, enantioselectivity, directed evolution
variant; HET: FAD; 1.85A {Aspergillus niger} PDB:
2vvl_A* 2vvl_G*
Length = 495
Score = 36.5 bits (84), Expect = 0.020
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 48 SMSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKI 85
++ + +DV+V+GGG G+ R+L + K +
Sbjct: 30 NIEDTDKDGPWDVIVIGGGYCGLTATRDLTVAGFKTLL 67
Score = 33.8 bits (77), Expect = 0.13
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 1 MSSSQSPTLYDMVVVGGGIVGVATARELK 29
+ + +D++V+GGG G+ R+L
Sbjct: 31 IEDTDKDGPWDVIVIGGGYCGLTATRDLT 59
Score = 31.1 bits (70), Expect = 0.78
Identities = 3/37 (8%), Positives = 10/37 (27%)
Query: 220 EIRLNQQVESFKENPESVTISTKQGDHLESSYALVCA 256
V S ++ ++ + G + +
Sbjct: 272 GYVFGCPVRSVVNERDAARVTARDGREFVAKRVVCTI 308
>3h28_A Sulfide-quinone reductase; monotopic membrane protein,
flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ
LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A*
3hyv_A* 3hyw_A* 3hyx_A*
Length = 430
Score = 36.2 bits (84), Expect = 0.022
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 60 VVVVGGGIVGVATARELKLNYPKMKICLVEK 90
VVV+GGG+ G+ATA L+ P +KI L+
Sbjct: 5 VVVIGGGVGGIATAYNLRNLMPDLKITLISD 35
Score = 35.1 bits (81), Expect = 0.042
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 9/80 (11%)
Query: 13 VVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFFSMSSSQSPALYDVVVVGGGIVGVA- 71
VV+GGG+ G+ATA L+ P +K L+ F +PA + G
Sbjct: 6 VVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFG-----FTPAFPH---LAMGWRKFED 57
Query: 72 TARELKLNYPKMKICLVEKE 91
+ L PK I + ++
Sbjct: 58 ISVPLAPLLPKFNIEFINEK 77
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant,
homotetramer, GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 36.3 bits (83), Expect = 0.023
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 50 SSSQSPALYDVVVVGGGIVGVATAREL 76
YDVV+VG G +G AREL
Sbjct: 39 KVPGMDIKYDVVIVGSGPIGCTYAREL 65
Score = 34.0 bits (77), Expect = 0.11
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 2 SSSQSPTLYDMVVVGGGIVGVATAREL 28
YD+V+VG G +G AREL
Sbjct: 39 KVPGMDIKYDVVIVGSGPIGCTYAREL 65
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 36.2 bits (84), Expect = 0.025
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 8/59 (13%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGT 116
V+VVG G G + K + LV+K +G NS ++ AG GT
Sbjct: 122 TQVLVVGAGSAGFNASLAAKKA--GANVILVDK-----APFSGGNS-MISAGGMNAVGT 172
Score = 28.9 bits (65), Expect = 4.6
Identities = 16/72 (22%), Positives = 24/72 (33%), Gaps = 12/72 (16%)
Query: 10 YDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFFSMSSSQSPALYDVVVVGGGIVG 69
++VVG G G + K LV+K F +S S GG+
Sbjct: 122 TQVLVVGAGSAGFNASLAAKKA--GANVILVDKA-PFSGGNSMIS---------AGGMNA 169
Query: 70 VATARELKLNYP 81
V T ++
Sbjct: 170 VGTKQQTAHGVE 181
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP;
2.10A {Pyrococcus furiosus}
Length = 421
Score = 35.8 bits (83), Expect = 0.027
Identities = 35/219 (15%), Positives = 74/219 (33%), Gaps = 54/219 (24%)
Query: 59 DVVVVGGGIVGVATAREL-KLNYPKMKICLVEKEKELG-----MHQTGH--NSGVVHAGI 110
VVVG G+ G+ L + + +I ++EK +G + G ++G +H
Sbjct: 2 RAVVVGAGLGGLLAGAFLARNGH---EIIVLEKSAMIGGRFTNLPYKGFQLSTGALHMIP 58
Query: 111 YYKPGTLKAKLCVEGMNLAYE----------YFDKRNIPYKKCGKLIVALNEQLEPLHDL 160
+ + G L + + E ++ + Y++ K + ++ E+ + L L
Sbjct: 59 HGEDGPL--AHLLRILGAKVEIVNSNPKGKILWEGKIFHYRESWKFL-SVKEKAKALKLL 115
Query: 161 YE------------------RSIQNNVKDVRL----------VSAEEIKTIEPYCKGVKA 192
E I N + + VS ++ +E + A
Sbjct: 116 AEIRMNKLPKEEIPADEWIKEKIGENEFLLSVLESFAGWADSVSLSDLTALELAKEIRAA 175
Query: 193 IHSPNTGIVD--WGLVTRVMGEEFCELGGEIRLNQQVES 229
+ G++ V + E G+I ++V
Sbjct: 176 LRWGGPGLIRGGCKAVIDELERIIMENKGKILTRKEVVE 214
Score = 35.0 bits (81), Expect = 0.045
Identities = 25/143 (17%), Positives = 44/143 (30%), Gaps = 12/143 (8%)
Query: 320 VWLGPNAVLAFKKEGYRWRD----FSVRELFSTLRYPGFWRLG-LKYTRYGSKEMIMSWF 374
V P + ++ + + +R+ SV+E L+ R+ L + E I
Sbjct: 79 VNSNPKGKILWEGKIFHYRESWKFLSVKEKAKALKLLAEIRMNKLPKEEIPADEWIKEKI 138
Query: 375 PSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFGVKAIHSPHTGIVDWGLV 434
NE + E AG S AL + ++ G V
Sbjct: 139 GE---NEFLLSVLESFAGWA-DSVSLSDLTALELAKEIRAALRWGGPGLIRGG---CKAV 191
Query: 435 TRVMGEEFCELGGEIRLNQQVES 457
+ E G+I ++V
Sbjct: 192 IDELERIIMENKGKILTRKEVVE 214
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport,
FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum
tepidum}
Length = 360
Score = 35.7 bits (83), Expect = 0.030
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 49 MSSSQSPA-----LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95
M +PA + D+ ++GGG G+ A + +N + ++E +LG
Sbjct: 1 MLDIHNPATDHHDMRDLTIIGGGPTGIFAAFQCGMN--NISCRIIESMPQLG 50
Score = 32.7 bits (75), Expect = 0.28
Identities = 7/39 (17%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 3 SSQSPTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVE 41
++ + D+ ++GGG G+ A + + + ++E
Sbjct: 8 ATDHHDMRDLTIIGGGPTGIFAAFQCGMN--NISCRIIE 44
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 35.8 bits (83), Expect = 0.032
Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 11/79 (13%)
Query: 26 RELKLKYPKMKTCLVEKEK--EFFSMSSSQSPAL-------YDVVVVGGGIVGVATAREL 76
P K L ++ E S + AL DVVVVG G G + A
Sbjct: 86 HSFDFNMPYAKKWLRDEPTIAELAKDKSERQAALASAPHDTVDVVVVGSGGAGFSAAISA 145
Query: 77 KLNYPKMKICLVEKEKELG 95
+ K+ L+EKE +G
Sbjct: 146 TDS--GAKVILIEKEPVIG 162
Score = 30.4 bits (69), Expect = 1.5
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 10 YDMVVVGGGIVGVATARELKLKYPKMKTCLVEKE 43
D+VVVG G G + A K L+EKE
Sbjct: 127 VDVVVVGSGGAGFSAAISATDS--GAKVILIEKE 158
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate
dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A
{Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Length = 501
Score = 35.6 bits (83), Expect = 0.035
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 13/50 (26%)
Query: 10 YDMVVVGGGIVGVATARE-----LKLKYPKMKTCLVEKEKEFFSMSSSQS 54
D++V+GGGI G A + L ++E + + +SS S
Sbjct: 4 KDLIVIGGGINGAGIAADAAGRGL-------SVLMLEAQ-DLACATSSAS 45
Score = 34.5 bits (80), Expect = 0.068
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 12/38 (31%)
Query: 58 YDVVVVGGGIVGVATARE-----LKLNYPKMKICLVEK 90
D++V+GGGI G A + L + ++E
Sbjct: 4 KDLIVIGGGINGAGIAADAAGRGL-------SVLMLEA 34
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG FUC
PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2
d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A*
1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 35.6 bits (82), Expect = 0.036
Identities = 33/266 (12%), Positives = 73/266 (27%), Gaps = 62/266 (23%)
Query: 52 SQSPALYDVVVVGGGIVGVATARELK---LNY---------------------------- 80
+ VV+VG G+ G++ A L
Sbjct: 28 KATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLG 87
Query: 81 ----PKMKICLVEKEKELGM-----HQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYE 131
P+ + E ++ + Q N+ I K G +K + +
Sbjct: 88 PMRLPEKHRIVREYIRKFDLRLNEFSQENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPS 147
Query: 132 YFDK--RNIPYKKCGKLI--VALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYC 187
K + + GK++ + L+ S + + +S + I
Sbjct: 148 EAGKSAGQLYEESLGKVVEELKRTNCSYILNKYDTYSTKEYLIKEGDLSPGAVDMIGDLL 207
Query: 188 KGVKAIHSPNTGIVDWGLVTRVMGEEFC--------------ELGGEIRLNQQVESFKEN 233
+ + + ++ ++ N QV ++N
Sbjct: 208 NEDSGYYVSFIESLKHDDIFAYEKRFDEIVDGMDKLPTAMYRDIQDKVHFNAQVIKIQQN 267
Query: 234 PESVTI----STKQGDHLESSYALVC 255
+ VT+ +K+ + + Y +VC
Sbjct: 268 DQKVTVVYETLSKETPSVTADYVIVC 293
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD;
2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5
d.87.1.1
Length = 499
Score = 35.2 bits (82), Expect = 0.040
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAG 257
V+ E F E G + N + S V ++ G +E S+AL+ G
Sbjct: 225 AALVLEESFAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIG 276
Score = 32.9 bits (76), Expect = 0.20
Identities = 7/39 (17%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 58 YDVVVVGGGIVG-VATARELKLNYPKMKICLVEKEKELG 95
+V++GGG G A + ++ +++ + +G
Sbjct: 3 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IG 40
Score = 30.2 bits (69), Expect = 1.5
Identities = 6/36 (16%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 10 YDMVVVGGGIVG-VATARELKLKYPKMKTCLVEKEK 44
+V++GGG G A + +++ +
Sbjct: 3 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG 38
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase,
flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE;
1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A*
3ayl_A*
Length = 721
Score = 35.2 bits (79), Expect = 0.053
Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 6/110 (5%)
Query: 7 PTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFFSMSSSQSPALYDVVVVGGG 66
P L + V AR + Y + LV + Y + +VGGG
Sbjct: 6 PRLLGLKDEKKIATTVGEARLSGINYRHPDSALVSYPVAAAAPLGRLPAGNYRIAIVGGG 65
Query: 67 IVGVATARELK------LNYPKMKICLVEKEKELGMHQTGHNSGVVHAGI 110
G+A EL + + + E + + +H + G+
Sbjct: 66 AGGIAALYELGRLAATLPAGSGIDVQIYEADPDSFLHDRPGIKAIKVRGL 115
Score = 28.3 bits (61), Expect = 6.6
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 3 SSQSPTLYDMVVVGGGIVGVATAREL 28
Y + +VGGG G+A EL
Sbjct: 50 GRLPAGNYRIAIVGGGAGGIAALYEL 75
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis
baeyer-villiger oxidation green CH monooxygenase,
oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP}
PDB: 3gwd_A* 3ucl_A*
Length = 540
Score = 34.9 bits (81), Expect = 0.062
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 51 SSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95
++Q+ D VV+G G G+ +L + + +K G
Sbjct: 2 TAQTTHTVDAVVIGAGFGGIYAVHKLH-HELGLTTVGFDKADGPG 45
Score = 30.6 bits (70), Expect = 1.3
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 3 SSQSPTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEF 46
++Q+ D VV+G G G+ +L + + T +K
Sbjct: 2 TAQTTHTVDAVVIGAGFGGIYAVHKLHHE-LGLTTVGFDKADGP 44
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 34.7 bits (80), Expect = 0.065
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95
DVV++G G G+A A + K+ L+EKE G
Sbjct: 127 TDVVIIGSGGAGLAAAVSARDA--GAKVILLEKEPIPG 162
Score = 29.3 bits (66), Expect = 3.1
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 12/70 (17%)
Query: 10 YDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFFSMSSSQSPALYDVVVVGGGIVG 69
D+V++G G G+A A + K L+EKE ++ + GG+
Sbjct: 127 TDVVIIGSGGAGLAAAVSARDA--GAKVILLEKEPIPGG-NTKLA---------AGGMNA 174
Query: 70 VATARELKLN 79
T + KL
Sbjct: 175 AETKPQAKLG 184
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 35.0 bits (79), Expect = 0.066
Identities = 24/166 (14%), Positives = 53/166 (31%), Gaps = 15/166 (9%)
Query: 46 FFSMSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSG- 104
+ + + V+++G G+ G+A AR+L+ M + L+E +G G
Sbjct: 267 YKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFG--MDVTLLEARDRVGGRVATFRKGN 324
Query: 105 -VVHAGIYYKPGT-----------LKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNE 152
V G G + +L + + +P +K + N
Sbjct: 325 YVADLGAMVVTGLGGNPMAVVSKQVNMELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNR 384
Query: 153 QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNT 198
LE L + N + + + + ++ + +
Sbjct: 385 LLEATSYLSHQLDFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEH 430
Score = 29.9 bits (66), Expect = 2.3
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 2 SSSQSPTLYDMVVVGGGIVGVATARELK 29
+ ++++G G+ G+A AR+L+
Sbjct: 271 KPLPTKKTGKVIIIGSGVSGLAAARQLQ 298
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.70A {Bacillus halodurans}
Length = 561
Score = 34.6 bits (80), Expect = 0.067
Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Query: 10 YDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFFSMSSSQS 54
D++V+GGGI G A + +++ ++T LVE +F S +SS+S
Sbjct: 19 LDLLVIGGGITGAGIALDAQVR--GIQTGLVEMN-DFASGTSSRS 60
Score = 31.9 bits (73), Expect = 0.50
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 12/39 (30%)
Query: 58 YDVVVVGGGIVGVATARE-----LKLNYPKMKICLVEKE 91
D++V+GGGI G A + + + LVE
Sbjct: 19 LDLLVIGGGITGAGIALDAQVRGI-------QTGLVEMN 50
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 34.4 bits (79), Expect = 0.072
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 58 YDVVVVGGGIVGVATARELK 77
+ V ++G G G+ A LK
Sbjct: 5 HKVAIIGAGAAGIGMAITLK 24
Score = 31.3 bits (71), Expect = 0.59
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 10 YDMVVVGGGIVGVATARELK 29
+ + ++G G G+ A LK
Sbjct: 5 HKVAIIGAGAAGIGMAITLK 24
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein,
oxidoreductase; HET: FAD; 2.89A {Streptomyces
argillaceus}
Length = 570
Score = 34.7 bits (80), Expect = 0.072
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 50 SSSQSPALYDVVVVGGGIVGVATAREL 76
++ + DVVVVGGG VG+ A EL
Sbjct: 42 NADDAALTTDVVVVGGGPVGLMLAGEL 68
Score = 32.0 bits (73), Expect = 0.53
Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 208 RVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDH---LESSYALVCAG 257
++ E E G EI +V +++ E+V ++ + + Y + C G
Sbjct: 152 ALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDG 204
Score = 30.0 bits (68), Expect = 1.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 2 SSSQSPTLYDMVVVGGGIVGVATAREL 28
++ + D+VVVGGG VG+ A EL
Sbjct: 42 NADDAALTTDVVVVGGGPVGLMLAGEL 68
>4g65_A TRK system potassium uptake protein TRKA; structural genomics,
center for structural genomics of infec diseases, csgid,
niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Length = 461
Score = 34.1 bits (79), Expect = 0.085
Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 44 KEFFSMSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKE 93
+ S +++VGGG +G + A+ L+ Y + L+E+ +
Sbjct: 222 RSVMSELQRLEKPYRRIMIVGGGNIGASLAKRLEQTY---SVKLIERNLQ 268
Score = 29.1 bits (66), Expect = 3.8
Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 11 DMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKE 45
+++VGGG +G + A+ L+ Y L+E+ +
Sbjct: 237 RIMIVGGGNIGASLAKRLEQTY---SVKLIERNLQ 268
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis,
merohedral twinning, enzyme mechanism, hydroxylase,
flavoprotein; HET: FAD VAK; 2.49A {Streptomyces
purpurascens}
Length = 535
Score = 34.3 bits (79), Expect = 0.094
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Query: 49 MSSSQSPALYDVVVVGGGIVGVATAREL 76
M+ + DV+VVG G+ G++TA L
Sbjct: 1 MNDHE----VDVLVVGAGLGGLSTAMFL 24
Score = 30.4 bits (69), Expect = 1.6
Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 7/57 (12%)
Query: 208 RVMGEEFCELGGEIRLNQQVESFKENPESVTI-------STKQGDHLESSYALVCAG 257
++ + + GG IR ++ SF+++ + L + Y + G
Sbjct: 124 PILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPDGEYDLRAGYLVGADG 180
Score = 28.9 bits (65), Expect = 4.8
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Query: 1 MSSSQSPTLYDMVVVGGGIVGVATAREL 28
M+ + D++VVG G+ G++TA L
Sbjct: 1 MNDHE----VDVLVVGAGLGGLSTAMFL 24
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4
d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Length = 643
Score = 34.0 bits (78), Expect = 0.10
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPK--MKICLVEK 90
D++++GGG G A E +K+ LVEK
Sbjct: 23 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEK 57
Score = 32.5 bits (74), Expect = 0.34
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 10 YDMVVVGGGIVGVATARELKL--KYPKMKTCLVEK 42
D++++GGG G A E K +K LVEK
Sbjct: 23 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEK 57
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Length = 499
Score = 33.8 bits (78), Expect = 0.11
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 50 SSSQSPALYDVVVVGGGIVGVATAREL 76
+ V+VVG G G+ A EL
Sbjct: 5 HHHHHRSDASVIVVGAGPAGLMLAGEL 31
Score = 32.3 bits (74), Expect = 0.35
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 208 RVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGD---HLESSYALVCAG 257
V+ E G E+ V + + + V + + D L + Y + C G
Sbjct: 111 SVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDG 163
Score = 29.2 bits (66), Expect = 3.6
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 2 SSSQSPTLYDMVVVGGGIVGVATAREL 28
+ ++VVG G G+ A EL
Sbjct: 5 HHHHHRSDASVIVVGAGPAGLMLAGEL 31
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase,
oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB:
2rgo_A*
Length = 571
Score = 34.2 bits (79), Expect = 0.11
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 10 YDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFFSMSSSQS 54
D++++GGGI G A + +KT L+E + +F +SS+S
Sbjct: 33 LDLLIIGGGITGAGVAVQAAAS--GIKTGLIEMQ-DFAEGTSSRS 74
Score = 31.5 bits (72), Expect = 0.64
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 12/39 (30%)
Query: 58 YDVVVVGGGIVGVATARE-----LKLNYPKMKICLVEKE 91
D++++GGGI G A + + K L+E +
Sbjct: 33 LDLLIIGGGITGAGVAVQAAASGI-------KTGLIEMQ 64
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement,
oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum}
SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*
Length = 665
Score = 33.9 bits (77), Expect = 0.12
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 49 MSSSQSPALYDVVVVGGGIVGVATARELKLNYPK---MKICLVEKE 91
M+ S + DV++VG G G+ AR L + +K+ +++K
Sbjct: 1 MTKY-SESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKR 45
Score = 32.3 bits (73), Expect = 0.36
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 1 MSSSQSPTLYDMVVVGGGIVGVATARELKLKYPK---MKTCLVEKEKEFFSMS 50
M+ S + D+++VG G G+ AR L + +K +++K
Sbjct: 1 MTKY-SESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNG 52
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold,
oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens}
PDB: 3h8i_A*
Length = 409
Score = 33.5 bits (77), Expect = 0.12
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 60 VVVVGGGIVGVATAREL-KLNYPKMKICLVEKE 91
V+V+GG + A L +L K + ++ K
Sbjct: 4 VLVLGGRFGALTAAYTLKRLVGSKADVKVINKS 36
Score = 31.6 bits (72), Expect = 0.57
Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 10/78 (12%)
Query: 13 VVVGGGIVGVATAREL-KLKYPKMKTCLVEKEKEFFSMSSSQSPALYDVVVVGGGIVGVA 71
+V+GG + A L +L K ++ K + + PAL V G+ V
Sbjct: 5 LVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSY-----FRPALPH---VAIGVRDVD 56
Query: 72 -TARELKLNYPKMKICLV 88
+L P+ I
Sbjct: 57 ELKVDLSEALPEKGIQFQ 74
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 33.8 bits (77), Expect = 0.14
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 58 YDVVVVGGGIVGVATAREL----KLNYPKMKICLVEK 90
D+++VGGG+ A E P+ KI LV+K
Sbjct: 23 VDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDK 59
Score = 30.0 bits (67), Expect = 2.3
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 10 YDMVVVGGGIVGVATAREL----KLKYPKMKTCLVEK 42
D+++VGGG+ A E P+ K LV+K
Sbjct: 23 VDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDK 59
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Length = 500
Score = 33.4 bits (77), Expect = 0.14
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 58 YDVVVVGGGIVGVATARELKL 78
V+VVG G G+ A EL+L
Sbjct: 12 AAVIVVGAGPAGMMLAGELRL 32
Score = 33.4 bits (77), Expect = 0.15
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 208 RVMGEEFCELGGEIRLNQQVESFKENPESVT--ISTKQGDH-LESSYALVCAG 257
+ + LG +IR +V S ++ VT + +G H L ++Y + C G
Sbjct: 110 THLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDG 162
Score = 28.8 bits (65), Expect = 4.6
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 4 SQSPTLYDMVVVGGGIVGVATARELKL 30
+ ++VVG G G+ A EL+L
Sbjct: 6 HHHRSDAAVIVVGAGPAGMMLAGELRL 32
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone
oxidoreductase, Cys356Ala variant, integral membrane
protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus
ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A*
3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A*
3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Length = 437
Score = 33.6 bits (77), Expect = 0.14
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 60 VVVVGGGIVGVATAREL-KLNYPKMKICLVEK 90
VV++G G G+ A E+ + ++ L+
Sbjct: 7 VVILGAGTGGMPAAYEMKEALGSGHEVTLISA 38
Score = 28.6 bits (64), Expect = 5.6
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 13 VVVGGGIVGVATARELKLKYPK 34
V++G G G+ A E+K
Sbjct: 8 VILGAGTGGMPAAYEMKEALGS 29
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH,
flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus
subtilis} PDB: 3lzx_A*
Length = 332
Score = 33.3 bits (77), Expect = 0.15
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 52 SQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95
+ +YD+ ++GGG VG+ TA + + + ++E +LG
Sbjct: 2 REDTKVYDITIIGGGPVGLFTAFYGGMR--QASVKIIESLPQLG 43
Score = 31.4 bits (72), Expect = 0.60
Identities = 10/39 (25%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 4 SQSPTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEK 42
+ +YD+ ++GGG VG+ TA ++ + ++E
Sbjct: 2 REDTKVYDITIIGGGPVGLFTAFYGGMR--QASVKIIES 38
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 33.5 bits (77), Expect = 0.15
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95
DVVV G GI GVA + E + ++E+ G
Sbjct: 42 ADVVVAGYGIAGVAASIEAARA--GADVLVLERTSGWG 77
Score = 28.4 bits (64), Expect = 5.0
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 8/40 (20%)
Query: 10 YDMVVVGGGIVGVA---TARELKLKYPKMKTCLVEKEKEF 46
D+VV G GI GVA A ++E+ +
Sbjct: 42 ADVVVAGYGIAGVAASIEAARAGA-----DVLVLERTSGW 76
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A
{Novosphingobium aromaticivorans}
Length = 415
Score = 33.3 bits (77), Expect = 0.16
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 49 MSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKEL 94
M+S DVV+VG G G A L+ N + ++ ++ +E E+
Sbjct: 1 MASEVQAERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEI 46
Score = 32.6 bits (75), Expect = 0.30
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 1 MSSSQSPTLYDMVVVGGGIVGVATAREL 28
M+S D+V+VG G G A L
Sbjct: 1 MASEVQAERADVVIVGAGHGGAQAAIAL 28
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase,
oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays}
SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A*
1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Length = 472
Score = 33.3 bits (76), Expect = 0.17
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 54 SPALYDVVVVGGGIVGVATARELK 77
+ V+VVG G+ G++ A+ L
Sbjct: 1 ATVGPRVIVVGAGMSGISAAKRLS 24
Score = 32.2 bits (73), Expect = 0.39
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 216 ELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALV 254
+ ++LN+ V K +P VT+ T+ + Y +V
Sbjct: 226 IVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMV 264
Score = 29.9 bits (67), Expect = 1.8
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 6 SPTLYDMVVVGGGIVGVATARELK 29
+ ++VVG G+ G++ A+ L
Sbjct: 1 ATVGPRVIVVGAGMSGISAAKRLS 24
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase,
complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas
testosteroni} PDB: 2dki_A*
Length = 639
Score = 33.4 bits (76), Expect = 0.18
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 50 SSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEK 90
+ P+ DV++VG G G+ A +L +P ++ C+VE+
Sbjct: 25 HTEAVPSQVDVLIVGCGPAGLTLAAQL-AAFPDIRTCIVEQ 64
Score = 33.4 bits (76), Expect = 0.20
Identities = 13/49 (26%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 2 SSSQSPTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFFSMS 50
+ P+ D+++VG G G+ A +L +P ++TC+VE+++ +
Sbjct: 25 HTEAVPSQVDVLIVGCGPAGLTLAAQL-AAFPDIRTCIVEQKEGPMELG 72
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome,
transcription, LSD1, alternative splicing, chromatin
regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens}
SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A*
3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A*
2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Length = 662
Score = 33.3 bits (75), Expect = 0.18
Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSG--VVHAGIYYKPG 115
V+++G G+ G+A AR+L+ M + L+E +G G V G G
Sbjct: 108 GKVIIIGSGVSGLAAARQLQSF--GMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTG 165
Query: 116 TLKAKLC--VEGMNLAYEYFDKRNIPYKKCGKLI 147
+ + +N+ ++ Y+ G+ +
Sbjct: 166 LGGNPMAVVSKQVNMELAKIKQKCPLYEANGQAV 199
Score = 29.5 bits (65), Expect = 3.1
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 2 SSSQSPTLYDMVVVGGGIVGVATARELK 29
+ ++++G G+ G+A AR+L+
Sbjct: 100 KPLPTKKTGKVIIIGSGVSGLAAARQLQ 127
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase,
2-oxoglutarate dehydrogenase comple pyruvate
dehydrogenase complex; HET: FAD; 1.70A {Thermus
thermophilus} PDB: 2eq7_A*
Length = 455
Score = 32.9 bits (76), Expect = 0.21
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 218 GGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAG 257
G IR +V + + + + G+ LE+ LV G
Sbjct: 222 GLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVG 261
Score = 31.7 bits (73), Expect = 0.59
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 4/40 (10%)
Query: 57 LYDVVVVGGGIVG-VATARELKLNYPKMKICLVEKEKELG 95
+YD++V+G G G VA R +L MK+ +VEKEK LG
Sbjct: 1 MYDLLVIGAGPGGYVAAIRAAQLG---MKVGVVEKEKALG 37
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis,
FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP:
a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Length = 540
Score = 33.0 bits (76), Expect = 0.21
Identities = 8/35 (22%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92
DV+++G G G++ A L + ++ ++ K
Sbjct: 9 CDVLIIGSGAAGLSLALRL---ADQHQVIVLSKGP 40
Score = 28.8 bits (65), Expect = 4.3
Identities = 14/92 (15%), Positives = 32/92 (34%), Gaps = 22/92 (23%)
Query: 1 MSSSQSPTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFFSMSSSQ------- 53
M++ + D++++G G G++ A L + + ++ K + S+
Sbjct: 1 MNTLPEHS-CDVLIIGSGAAGLSLALRL---ADQHQVIVLSKGP--VTEGSTFYAQGGIA 54
Query: 54 -------SPAL--YDVVVVGGGIVGVATAREL 76
S D ++ G GI +
Sbjct: 55 AVFDETDSIDSHVEDTLIAGAGICDRHAVEFV 86
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace,
succinate dehydrogenase, CO quinol, quinone,
oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A
{Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB:
1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A*
3p4s_A*
Length = 602
Score = 33.0 bits (76), Expect = 0.21
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEK 90
D+ +VG G G+ A P KI L+ K
Sbjct: 6 ADLAIVGAGGAGLRAAIAAAQANPNAKIALISK 38
Score = 31.5 bits (72), Expect = 0.64
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 10 YDMVVVGGGIVGVATARELKLKYPKMKTCLVEK 42
D+ +VG G G+ A P K L+ K
Sbjct: 6 ADLAIVGAGGAGLRAAIAAAQANPNAKIALISK 38
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 32.9 bits (76), Expect = 0.21
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Query: 51 SSQSPALYDVVVVGGGIVGVATAREL-KLNYPKMKICLVEKEKELG 95
++ YDVVVVG GI G+ + E +G
Sbjct: 15 ATTGTTSYDVVVVGAGIAGLYAIHRFRSQGL---TVRAFEAASGVG 57
Score = 27.9 bits (63), Expect = 8.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 3 SSQSPTLYDMVVVGGGIVGVATARELK 29
++ T YD+VVVG GI G+ +
Sbjct: 15 ATTGTTSYDVVVVGAGIAGLYAIHRFR 41
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 32.9 bits (76), Expect = 0.22
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 50 SSSQSPALYDVVVVGGGIVGVATAREL-KLNYPKMKICLVEKEKELG 95
S Q P DV+VVG G G+ L +L + ++E ++G
Sbjct: 9 SRRQPPEEVDVLVVGAGFSGLYALYRLRELGR---SVHVIETAGDVG 52
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase,
rossmann, flavoprotein, alternative initiati
mitochondrion, NADP; HET: FAD; 1.75A {Drosophila
melanogaster} PDB: 2nvk_X* 3dh9_A*
Length = 483
Score = 32.9 bits (76), Expect = 0.24
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 1 MSSSQSPTLYDMVVVGGGIVGVATARE 27
M+ Q YD++V+GGG G+A A+E
Sbjct: 1 MAPVQGSYDYDLIVIGGGSAGLACAKE 27
Score = 32.1 bits (74), Expect = 0.41
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 49 MSSSQSPALYDVVVVGGGIVGVATARE 75
M+ Q YD++V+GGG G+A A+E
Sbjct: 1 MAPVQGSYDYDLIVIGGGSAGLACAKE 27
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase;
HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB:
2r0g_A* 2r0p_A* 3ept_A*
Length = 549
Score = 32.8 bits (75), Expect = 0.26
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 58 YDVVVVGGGIVGVATAREL 76
DV+++GGG VG+A A +L
Sbjct: 27 TDVLILGGGPVGMALALDL 45
Score = 28.1 bits (63), Expect = 7.1
Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 216 ELGGEIRLNQQVESFKENPESVT-----ISTKQGDHLESSYALVCAG 257
+G +R +++SF++ + V + T + + Y + C G
Sbjct: 147 AVGERLRTRSRLDSFEQRDDHVRATITDLRTGATRAVHARYLVACDG 193
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating
complex, structural GEN PSI-2-2, protein structure
initiative; HET: AMP; 3.45A {Thermotoga maritima}
Length = 218
Score = 32.2 bits (74), Expect = 0.28
Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 60 VVVVGGGIVGVATARELKLNYPKMKICLVEKEKE 93
V+++GG AR + K + ++ K++E
Sbjct: 3 VIIIGGETTAYYLARSMLSR--KYGVVIINKDRE 34
Score = 27.5 bits (62), Expect = 8.9
Identities = 7/33 (21%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 13 VVVGGGIVGVATARELKLKYPKMKTCLVEKEKE 45
+++GG AR + + K ++ K++E
Sbjct: 4 IIIGGETTAYYLARSMLSR--KYGVVIINKDRE 34
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A*
3ada_A*
Length = 965
Score = 32.6 bits (74), Expect = 0.29
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95
DV+VVG G G+A ARE + ++ L+++ E G
Sbjct: 130 DVLVVGAGPAGLAAAREASRS--GARVMLLDERAEAG 164
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for
structural genomics, secsg, hyperthermoph protein
structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus
furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 367
Score = 32.1 bits (74), Expect = 0.32
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 60 VVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92
VV+VG G G A++L ++ +++KE
Sbjct: 11 VVIVGNGPGGFELAKQLS---QTYEVTVIDKEP 40
Score = 29.1 bits (66), Expect = 3.6
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 13 VVVGGGIVGVATAREL 28
V+VG G G A++L
Sbjct: 12 VIVGNGPGGFELAKQL 27
Score = 28.3 bits (64), Expect = 6.5
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 13 VVVGGGIVGVATARELKLKYPKMKTCLVE 41
+++GGG +G+ A L L+
Sbjct: 147 IIIGGGFIGLELAGNLAEA--GYHVKLIH 173
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD;
2.72A {Stenotrophomonas maltophilia}
Length = 357
Score = 32.3 bits (74), Expect = 0.32
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 58 YDVVVVGGGIVGVATARELK 77
DVVV+GGG G++ L+
Sbjct: 4 VDVVVIGGGQSGLSAGYFLR 23
Score = 28.9 bits (65), Expect = 4.2
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 10 YDMVVVGGGIVGVATARELK 29
D+VV+GGG G++ L+
Sbjct: 4 VDVVVIGGGQSGLSAGYFLR 23
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta
fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium
loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A*
3alm_A* 3all_A*
Length = 379
Score = 32.3 bits (74), Expect = 0.34
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 48 SMSSSQSPALYDVVVVGGGIVGVATARELK 77
+++ + V GGG G+ A LK
Sbjct: 3 NVNKTPGKTR-RAEVAGGGFAGLTAAIALK 31
Score = 29.6 bits (67), Expect = 2.6
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 1 MSSSQSPTLYDM--VVVGGGIVGVATARELKLK 31
M++ V GGG G+ A LK
Sbjct: 1 MANVNKTPGKTRRAEVAGGGFAGLTAAIALKQN 33
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structur initiative;
2.30A {Desulfovibrio vulgaris}
Length = 472
Score = 32.5 bits (75), Expect = 0.34
Identities = 11/73 (15%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 207 TRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD-EMAL 265
++++ + + + ++V + V L++ ++ AG+ + ++A
Sbjct: 205 SQMLRHDLEKNDVVVHTGEKVVRLEGENGKVARVITDKRTLDADLVILAAGVSPNTQLAR 264
Query: 266 KSGCSLEP--AIV 276
+G L+P AI+
Sbjct: 265 DAGLELDPRGAII 277
Score = 30.2 bits (69), Expect = 1.6
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 60 VVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92
VVV+G +G A K P+ + ++++
Sbjct: 6 VVVIGAVALGPKAACRFKRLDPEAHVTMIDQAS 38
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 31.9 bits (71), Expect = 0.41
Identities = 9/37 (24%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95
+ ++G GI G++ A+ L ++ L +K + G
Sbjct: 4 PIAIIGTGIAGLSAAQALTAA--GHQVHLFDKSRGSG 38
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 32.1 bits (74), Expect = 0.42
Identities = 12/51 (23%), Positives = 27/51 (52%)
Query: 207 TRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAG 257
T ++ +++ G + L +V +F+E + + T G ++S A++C G
Sbjct: 194 TDILAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTLDGKEIKSDIAILCIG 244
Score = 30.5 bits (70), Expect = 1.2
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 60 VVVVGGGIVGVATARELKLNYPKMKICLVEK 90
V+VVG G ++ ++P + E
Sbjct: 3 VIVVGCTHAGTFAVKQTIADHPDADVTAYEM 33
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis,
sleeping sickness, flavoPro redox-active center; HET:
FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A*
2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A*
1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Length = 495
Score = 31.8 bits (73), Expect = 0.46
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 10 YDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFFSMSSS 52
+D+VV+G G G+ Y K + +V+ + +
Sbjct: 8 FDLVVIGAGSGGLEAGWNAATLYGK-RVAVVDVQTSHGPPFYA 49
Score = 31.4 bits (72), Expect = 0.77
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGH 101
+D+VV+G G G+ Y K ++ +V+ + G
Sbjct: 8 FDLVVIGAGSGGLEAGWNAATLYGK-RVAVVDVQTSHGPPFYAA 50
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical
bundle, sandwiched sheets, structural genomics; HET:
TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A*
2ar8_A* 2ard_A* 2jkc_A*
Length = 538
Score = 32.0 bits (71), Expect = 0.46
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 54 SPALYDVVVVGGGIVGVATAREL-KLNYPKMKICLVEKEK 92
+ + ++V+VGGG G A L + + I L+E
Sbjct: 2 NKPIKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAA 41
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase;
HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A*
3rp6_A*
Length = 407
Score = 31.5 bits (72), Expect = 0.58
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 48 SMSSSQSPALYDVVVVGGGIVGVATARELK 77
+ + +V+G GI G++ A LK
Sbjct: 15 GENLYFQGHM-KAIVIGAGIGGLSAAVALK 43
Score = 28.8 bits (65), Expect = 4.4
Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 219 GEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCA 256
++ ++V +E+ + VT+ G L+ A
Sbjct: 140 DSVQFGKRVTRCEEDADGVTVWFTDGSSASGD-LLIAA 176
Score = 28.0 bits (63), Expect = 7.0
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 13 VVVGGGIVGVATARELK 29
+V+G GI G++ A LK
Sbjct: 27 IVIGAGIGGLSAAVALK 43
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD;
1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A*
2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Length = 408
Score = 31.4 bits (72), Expect = 0.61
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 49 MSSSQSPALYDVVVVGGGIVGVATAREL 76
MS A VVV+G G+ V+ EL
Sbjct: 1 MSQEALKA--PVVVLGAGLASVSFVAEL 26
Score = 29.5 bits (67), Expect = 2.4
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 1 MSSSQSPTLYDMVVVGGGIVGVATAREL 28
MS +VV+G G+ V+ EL
Sbjct: 1 MSQEALKA--PVVVLGAGLASVSFVAEL 26
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains;
transport, coiled coil, cytoskeleton, FAD, flavoprotein,
metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB:
2c4c_A* 2bra_A*
Length = 497
Score = 31.6 bits (71), Expect = 0.61
Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 13/81 (16%)
Query: 32 YPKMKTCLVE-KEKEFFSM----------SSSQSPALYDVVVVGGGIVGVATARELKLNY 80
Y K+K L K ++ Q+ +VVG G G+ A EL L
Sbjct: 56 YHKIKAQLNYWSAKSLWAKLDKRASQPVYQQGQACTNTKCLVVGAGPCGLRAAVELALL- 114
Query: 81 PKMKICLVEKEKELGMHQTGH 101
++ LVEK + H H
Sbjct: 115 -GARVVLVEKRIKFSRHNVLH 134
Score = 29.7 bits (66), Expect = 2.6
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 10 YDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEF 46
+VVG G G+ A EL L + LVEK +F
Sbjct: 93 TKCLVVGAGPCGLRAAVELALL--GARVVLVEKRIKF 127
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein
complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A
{Pyrococcus horikoshii}
Length = 493
Score = 31.5 bits (71), Expect = 0.62
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95
DV ++GGG G+ A EL+ + L+E+ LG
Sbjct: 110 DVAIIGGGPAGIGAALELQQYL---TVALIEERGWLG 143
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET:
FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2
d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A*
1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A*
1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A*
1phh_A* ...
Length = 394
Score = 31.2 bits (71), Expect = 0.67
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 58 YDVVVVGGGIVGVATARELKL 78
V ++G G G+ + L
Sbjct: 3 TQVAIIGAGPSGLLLGQLLHK 23
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural
genomics, NPPSFA, project on protein structural and
functional analyses; HET: FAD; 2.10A {Thermus
thermophilus}
Length = 335
Score = 31.0 bits (71), Expect = 0.69
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95
DV++VG G G+ + + + V+ E G
Sbjct: 6 TDVLIVGAGPTGLFAGFYVGMR--GLSFRFVDPLPEPG 41
Score = 29.5 bits (67), Expect = 2.2
Identities = 7/39 (17%), Positives = 19/39 (48%)
Query: 220 EIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGL 258
L ++ E+ + + ++T QG+ + ++ AG+
Sbjct: 81 VYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGV 119
Score = 28.7 bits (65), Expect = 3.9
Identities = 6/32 (18%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 10 YDMVVVGGGIVGVATARELKLKYPKMKTCLVE 41
D+++VG G G+ + ++ + V+
Sbjct: 6 TDVLIVGAGPTGLFAGFYVGMR--GLSFRFVD 35
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase,
flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia
fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A*
2yau_A* 2x50_A* 2ve2_A*
Length = 490
Score = 31.4 bits (72), Expect = 0.72
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 10 YDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEK 44
YD+VV+G G G+ + K + +++ +K
Sbjct: 4 YDLVVIGAGSGGLEAGWNAASLHKK-RVAVIDLQK 37
Score = 29.8 bits (68), Expect = 2.0
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG 100
YD+VV+G G G+ + K ++ +++ +K G
Sbjct: 4 YDLVVIGAGSGGLEAGWNAASLHKK-RVAVIDLQKHHGPPHYA 45
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei;
HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A*
2wes_A*
Length = 511
Score = 31.2 bits (69), Expect = 0.76
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 60 VVVVGGGIVGVATARELKLNYPK-MKICLVEKEKELGMH 97
VV+VGGG G TA LK + + + LVE +
Sbjct: 5 VVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNVRRIG 43
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 31.2 bits (70), Expect = 0.78
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 58 YDVVVVGGGIVGVATAREL 76
VV+G G +A L
Sbjct: 6 VPAVVIGTGYGAAVSALRL 24
Score = 27.7 bits (61), Expect = 8.7
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 10 YDMVVVGGGIVGVATARELKLKYPKMKTCLVEK 42
VV+G G +A L ++T ++E
Sbjct: 6 VPAVVIGTGYGAAVSALRLGEA--GVQTLMLEM 36
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis,
biosynthetic protein, flavoprotein; HET: TRP; 2.08A
{Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A*
2oal_A* 2oam_A
Length = 550
Score = 31.3 bits (69), Expect = 0.89
Identities = 29/265 (10%), Positives = 68/265 (25%), Gaps = 24/265 (9%)
Query: 60 VVVVGGGIVGVATARELKLNYPK-MKICLVEKEKE-----------------LGMHQTGH 101
+++VGGG G A L I L++
Sbjct: 28 ILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPE 87
Query: 102 NSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLY 161
+ + YK G + + ++ +EQ+ H +
Sbjct: 88 DEWMRECNASYKVAIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWF 147
Query: 162 ERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEF----CEL 217
+RS + + + + I + + + W ++ + E
Sbjct: 148 DRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGSKVTNYAWHFDAHLVADFLRRFATEK 207
Query: 218 GGEIRLNQQVESFK--ENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAI 275
G + +VE + N ++ T G ++ + C+G + +
Sbjct: 208 LGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMS 267
Query: 276 VPFRGEYLLLNPAKQHLVRGNIYPV 300
+ + + P
Sbjct: 268 DHLLNDSAVATQVPHDDDANGVEPF 292
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND
FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2
d.16.1.1 PDB: 3cox_A*
Length = 507
Score = 30.9 bits (69), Expect = 0.89
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 58 YDVVVVGGGIVGVATAREL 76
+V+G G G A L
Sbjct: 12 VPALVIGSGYGGAVAALRL 30
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G*
3cpi_G 3cph_G 3cpj_G*
Length = 453
Score = 31.0 bits (69), Expect = 0.95
Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 2/66 (3%)
Query: 49 MSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHA 108
M YDV+V+G GI + L K+ ++K+ G ++
Sbjct: 3 MDQETIDTDYDVIVLGTGITECILSGLLS--VDGKKVLHIDKQDHYGGEAASVTLSQLYE 60
Query: 109 GIYYKP 114
P
Sbjct: 61 KFKQNP 66
Score = 28.7 bits (63), Expect = 4.7
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 1 MSSSQSPTLYDMVVVGGGIVGVATAREL 28
M T YD++V+G GI + L
Sbjct: 3 MDQETIDTDYDVIVLGTGITECILSGLL 30
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin,
bacteroides F oxidoreductase; HET: FAD; 2.09A
{Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A*
2y6r_A* 3p9u_A*
Length = 398
Score = 30.9 bits (70), Expect = 0.98
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 49 MSSSQSPALYDVVVVGGGIVGVATARELK 77
M+ +V ++GGG VG+ A+ L+
Sbjct: 21 MNLLSDK---NVAIIGGGPVGLTMAKLLQ 46
Score = 27.8 bits (62), Expect = 8.4
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 1 MSSSQSPTLYDMVVVGGGIVGVATARELK 29
M+ + ++GGG VG+ A+ L+
Sbjct: 21 MNLLSDKNV---AIIGGGPVGLTMAKLLQ 46
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 30.7 bits (70), Expect = 1.1
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 10 YDMVVVGGGIVGVATAREL-KLKYPKMKTCLVEKEK 44
YD++V+GGG G+A AR + K LVEK +
Sbjct: 3 YDLIVIGGGSGGMAAARRAARH---NAKVALVEKSR 35
Score = 29.9 bits (68), Expect = 1.8
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 5/39 (12%)
Query: 58 YDVVVVGGGIVGVATAREL-KLNYPKMKICLVEKEKELG 95
YD++V+GGG G+A AR + N K+ LVEK + LG
Sbjct: 3 YDLIVIGGGSGGMAAARRAARHN---AKVALVEKSR-LG 37
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266,
NESG, PAR240, structural genomics, PSI-2; HET: FAD;
1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2
d.16.1.2 PDB: 2rgj_A*
Length = 410
Score = 30.7 bits (70), Expect = 1.1
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 3/42 (7%)
Query: 218 GGEIRLNQQVESFKENPESVTISTKQGDHLESSY---ALVCA 256
+R VE +E V I + G + LV A
Sbjct: 123 QQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLVGA 164
Score = 29.2 bits (66), Expect = 2.7
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 59 DVVVVGGGIVGVATAREL 76
D+++ G GI G++ A L
Sbjct: 6 DILIAGAGIGGLSCALAL 23
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex,
pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A
{Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 1jeh_A*
Length = 478
Score = 30.6 bits (70), Expect = 1.1
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 9/49 (18%)
Query: 48 SMSSSQSPALYDVVVVGGGIVG-VATARELKLNYPKMKICLVEKEKELG 95
+++ S +DVV++GGG G VA + +L VEK +LG
Sbjct: 1 TINKS-----HDVVIIGGGPAGYVAAIKAAQLG---FNTACVEKRGKLG 41
>1q1r_A Putidaredoxin reductase; glutathione reductase fold,
oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Length = 431
Score = 30.6 bits (70), Expect = 1.2
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 49 MSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKEL 94
M+++ +VV+VG G+ GV A L+ + + I LV +
Sbjct: 1 MNAND-----NVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVI 41
Score = 29.5 bits (67), Expect = 2.5
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 5/28 (17%)
Query: 1 MSSSQSPTLYDMVVVGGGIVGVATAREL 28
M+++ ++V+VG G+ GV A L
Sbjct: 1 MNAND-----NVVIVGTGLAGVEVAFGL 23
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain,
oxidor; HET: FAD KPC; 1.65A {Xanthobacter
autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Length = 523
Score = 30.7 bits (70), Expect = 1.2
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 58 YDVVVVGGGIVGVATAREL-KLNYPKMKICLVEKEKELG 95
YD + +GGG G + L + + +V++ LG
Sbjct: 44 YDAIFIGGGAAGRFGSAYLRAMG---GRQLIVDRWPFLG 79
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA;
rossmann fold, FAD-binding domain, dinucleotide-binding
motif; HET: FAD; 3.20A {Chlorobium tepidum}
Length = 641
Score = 30.5 bits (70), Expect = 1.2
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
Query: 43 EKEFFSMSSSQSPALYDVVVVGGGIVGV----ATAR 74
S + +YDV+VVG G G A AR
Sbjct: 7 HHHHSSGLVPRGSHMYDVIVVGAGHAGCEAALAVAR 42
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural
genomics, PSI-2, protein structure initiative; HET:
FAD; 2.60A {Enterococcus faecalis}
Length = 452
Score = 30.5 bits (70), Expect = 1.3
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 60 VVVVGGGIVGVATARELKLNYPKMKICLVEK 90
+V++G G++ A + YP+ +I L++K
Sbjct: 5 IVIIGASFAGISAAIASRKKYPQAEISLIDK 35
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A*
1f8w_A*
Length = 447
Score = 30.5 bits (70), Expect = 1.3
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 60 VVVVGGGIVGVATARELKLNYPKMKICLVEK 90
V+V+G G EL +P +I EK
Sbjct: 3 VIVLGSSHGGYEAVEELLNLHPDAEIQWYEK 33
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex,
rossmann fold, HO pyridine nucleotide disulfide
oxidoreductase, electron TRAN oxidoreductase; HET: FAD;
2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A*
2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Length = 519
Score = 30.6 bits (70), Expect = 1.3
Identities = 9/18 (50%), Positives = 15/18 (83%)
Query: 10 YDMVVVGGGIVGVATARE 27
YD++++GGG G+A A+E
Sbjct: 33 YDLIIIGGGSGGLAAAKE 50
Score = 30.3 bits (69), Expect = 1.7
Identities = 9/18 (50%), Positives = 15/18 (83%)
Query: 58 YDVVVVGGGIVGVATARE 75
YD++++GGG G+A A+E
Sbjct: 33 YDLIIIGGGSGGLAAAKE 50
>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD;
1.54A {Staphylococcus aureus}
Length = 438
Score = 30.5 bits (70), Expect = 1.4
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 60 VVVVGGGIVGVATARELKLNYPKMKICLVEK 90
+VVVG G A +++ + I + EK
Sbjct: 4 IVVVGAVAGGATCASQIRRLDKESDIIIFEK 34
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 30.6 bits (70), Expect = 1.4
Identities = 9/18 (50%), Positives = 15/18 (83%)
Query: 10 YDMVVVGGGIVGVATARE 27
+D++V+GGG G+A A+E
Sbjct: 7 FDLLVIGGGSGGLACAKE 24
Score = 30.2 bits (69), Expect = 1.8
Identities = 9/18 (50%), Positives = 15/18 (83%)
Query: 58 YDVVVVGGGIVGVATARE 75
+D++V+GGG G+A A+E
Sbjct: 7 FDLLVIGGGSGGLACAKE 24
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 30.2 bits (69), Expect = 1.4
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 52 SQSPALYDVVVVGGGIVGVATA 73
S + D V+G G G+ +
Sbjct: 1 SNAMKYIDCAVIGAGPAGLNAS 22
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A,
flavin adenine dinucleotide, selenomethionine, F
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 30.2 bits (69), Expect = 1.5
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 60 VVVVGGGIVGVATARELKLNYPKMKICLVEK 90
V++GG G++ A ++ N + +EK
Sbjct: 39 YVIIGGDAAGMSAAMQIVRNDENANVVTLEK 69
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic
hydroxylase, nicotine degradation, mono-oxygenase; HET:
FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2
d.16.1.2
Length = 397
Score = 30.4 bits (69), Expect = 1.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 60 VVVVGGGIVGVATARELK 77
+ VVGG I G+ A L+
Sbjct: 8 IAVVGGSISGLTAALMLR 25
Score = 28.8 bits (65), Expect = 4.1
Identities = 5/39 (12%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 218 GGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCA 256
++ + ++ E+V + G E++ ++ A
Sbjct: 111 PERYHTSKCLVGLSQDSETVQMRFSDGTKAEAN-WVIGA 148
Score = 28.1 bits (63), Expect = 7.7
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 13 VVVGGGIVGVATARELK 29
VVGG I G+ A L+
Sbjct: 9 AVVGGSISGLTAALMLR 25
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 30.3 bits (69), Expect = 1.6
Identities = 6/31 (19%), Positives = 15/31 (48%)
Query: 60 VVVVGGGIVGVATARELKLNYPKMKICLVEK 90
++++GG G + A + +I + E+
Sbjct: 4 ILIIGGVAGGASAAARARRLSETAEIIMFER 34
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 30.3 bits (69), Expect = 1.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 60 VVVVGGGIVGVATARELKLNYPKMKICLVEK 90
+VVVGG G + A L+ + +I +VE+
Sbjct: 39 IVVVGGVAGGASVAARLRRLSEEDEIIMVER 69
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 30.4 bits (69), Expect = 1.7
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 10 YDMVVVGGGIVGVATARE 27
YD++V+GGG G+A +E
Sbjct: 108 YDLIVIGGGSGGLAAGKE 125
Score = 30.0 bits (68), Expect = 1.7
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 58 YDVVVVGGGIVGVATARE 75
YD++V+GGG G+A +E
Sbjct: 108 YDLIVIGGGSGGLAAGKE 125
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 30.4 bits (69), Expect = 1.7
Identities = 10/48 (20%), Positives = 18/48 (37%)
Query: 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVV 106
V ++G G +G TA L + E G+ + +G +
Sbjct: 496 KVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGL 543
Score = 30.0 bits (68), Expect = 1.9
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 60 VVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95
+ VVG G G+A A ++ L + E+G
Sbjct: 376 LAVVGAGPAGLAFAINAAAR--GHQVTLFDAHSEIG 409
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution,
hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3
d.16.1.6 PDB: 1lv0_A* 1gnd_A
Length = 433
Score = 30.2 bits (67), Expect = 1.8
Identities = 43/276 (15%), Positives = 87/276 (31%), Gaps = 42/276 (15%)
Query: 7 PTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFFSMSSSQSPALYDVVVVGGG 66
YD++V+G G+ + + + K +++ + SSS +P
Sbjct: 4 DEEYDVIVLGTGLTECILSGIMSVN--GKKVLHMDRNPYYGGESSSITPLEELYKRFQLL 61
Query: 67 IVGVATARELKLNY----PKMKIC---LVEKEKELGMHQTGHNSGVVHAGIY-YKPGTLK 118
T + PK + LV+ + + V G + YK G +
Sbjct: 62 EGPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVV--EGSFVYKGGKIY 119
Query: 119 AKLCVEGMNLAYE---YFDKRNIP---------YKKCGKLIVALNEQLEPLHDLYER-SI 165
E LA F+KR + K ++ Q + D+Y + +
Sbjct: 120 KVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDL 179
Query: 166 QNNVKDVRL----VSAEEIKTIEPYCKGVKAIHSPNTGIVDWGL------------VTRV 209
+V D + + +P + + I + + +G + +
Sbjct: 180 GQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGELPQG 239
Query: 210 MGEEFCELGGEIRLNQQVESF-KENPESVTISTKQG 244
GG LN+ V+ EN + V + ++
Sbjct: 240 FARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGE 275
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase,
structural genomics structure initiative; 2.75A
{Pyrococcus horikoshii}
Length = 449
Score = 30.2 bits (69), Expect = 1.8
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 60 VVVVGGGIVGVATARELKLNYPKMKICLVEK 90
VV++GGG G++ A +K P+ + + E
Sbjct: 6 VVIIGGGAAGMSAASRVKRLKPEWDVKVFEA 36
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme
complex protein, pyruvate dehydrogenase complex,
glycine decarboxylase complex; HET: FAD; 3.15A {Pisum
sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 470
Score = 30.2 bits (69), Expect = 1.8
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 50 SSSQSPALYDVVVVGGGIVG-VATARELKLNYPKMKICLVEKEKELG 95
S S DVV++GGG G VA + +L K +EK LG
Sbjct: 2 SGSDE---NDVVIIGGGPGGYVAAIKAAQLG---FKTTCIEKRGALG 42
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 376
Score = 29.6 bits (65), Expect = 2.2
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 60 VVVVGGGIVGVATARELK 77
+++VG GI G+ L
Sbjct: 47 ILIVGAGIAGLVAGDLLT 64
Score = 29.6 bits (65), Expect = 2.6
Identities = 3/41 (7%), Positives = 11/41 (26%)
Query: 216 ELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCA 256
+L +I + Q++ + + +
Sbjct: 329 DLRDQIVMGQRMVRLEYYDPGRDGHHGELTGPGGPAVAIQT 369
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura
genomics, protein structure initiative; HET: FAD NDP;
2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5
PDB: 2gvc_A* 1vqw_A*
Length = 447
Score = 29.5 bits (66), Expect = 2.3
Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Query: 48 SMSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95
+ + + + ++G G G+ TA+ L ++ L E+ G
Sbjct: 2 CLPTIRK-----IAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPG 44
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics,
protein structure initiati YORK structural genomics
research consortium; HET: FAD; 1.90A {Sinorhizobium
meliloti}
Length = 491
Score = 29.8 bits (68), Expect = 2.4
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
Query: 40 VEKEKEFFSMSSSQSPALYDVVVVGGGIVG-VATARELKLNYPKMKICLVEKEKELG 95
+ E +F + YD++V+G G G V + +L MK+ +VEK G
Sbjct: 13 LGTENLYFQSMMA-----YDLIVIGSGPGGYVCAIKAAQLG---MKVAVVEKRSTYG 61
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed
with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A
{Saccharomyces cerevisiae}
Length = 479
Score = 29.4 bits (67), Expect = 2.5
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 58 YDVVVVGGGIVGVATARE 75
YD +V+GGG GVA+AR
Sbjct: 12 YDYLVIGGGSGGVASARR 29
Score = 29.4 bits (67), Expect = 2.7
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 10 YDMVVVGGGIVGVATARE 27
YD +V+GGG GVA+AR
Sbjct: 12 YDYLVIGGGSGGVASARR 29
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium
gracile} PDB: 2rab_A*
Length = 463
Score = 29.4 bits (67), Expect = 3.0
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 10 YDMVVVGGGIVGVATARE 27
+D++ +GGG G+A A +
Sbjct: 5 FDLIAIGGGSGGLAVAEK 22
Score = 29.0 bits (66), Expect = 3.3
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 58 YDVVVVGGGIVGVATARE 75
+D++ +GGG G+A A +
Sbjct: 5 FDLIAIGGGSGGLAVAEK 22
>4dna_A Probable glutathione reductase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: FAD; 2.80A {Sinorhizobium
meliloti}
Length = 463
Score = 29.4 bits (67), Expect = 3.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 10 YDMVVVGGGIVGVATARE 27
YD+ V+GGG GV + R
Sbjct: 6 YDLFVIGGGSGGVRSGRL 23
Score = 29.4 bits (67), Expect = 3.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 58 YDVVVVGGGIVGVATARE 75
YD+ V+GGG GV + R
Sbjct: 6 YDLFVIGGGSGGVRSGRL 23
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide
oxidoreductase, C(4A)-peroxyflavin, crystallography,
conformational dynamics; HET: FAD; 2.00A {Streptococcus
pyogenes} PDB: 2bcp_A* 2bc1_A*
Length = 490
Score = 29.5 bits (67), Expect = 3.1
Identities = 10/72 (13%), Positives = 23/72 (31%), Gaps = 3/72 (4%)
Query: 207 TRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALK 266
T +M + E G ++ + V+ N V + + ++ G + +
Sbjct: 239 TDLMAKNMEEHGIQLAFGETVKEVAGN-GKVEKIITDKNEYDVDMVILAVGFRPNTTLGN 297
Query: 267 SGCSLEP--AIV 276
L A +
Sbjct: 298 GKIDLFRNGAFL 309
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 29.4 bits (67), Expect = 3.1
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 10 YDMVVVGGGIVGVATARE 27
+D+ V+G G GV AR
Sbjct: 27 FDLFVIGSGSGGVRAARL 44
Score = 29.0 bits (66), Expect = 3.2
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 58 YDVVVVGGGIVGVATARE 75
+D+ V+G G GV AR
Sbjct: 27 FDLFVIGSGSGGVRAARL 44
>1kmt_A RHO GDP-dissociation inhibitor 1; immunoglobulin fold, beta
sandwich motif, isoprenyl-binding, protein binding;
1.30A {Homo sapiens} SCOP: b.1.18.8 PDB: 2jhu_A 2jhv_A
2jhw_A 1ft3_A 1ft0_A 1qvy_A 2jhz_A 2bxw_A 2jhx_A 2jhy_A
1rho_A 1fso_A 2ji0_A 2jhs_A* 2jht_A 1ajw_A 1gdf_A
Length = 141
Score = 28.3 bits (63), Expect = 3.1
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 332 KEG--YRWR-DFSV-RELFSTLRYP-GFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYI 386
KEG YR + F V RE+ S ++Y +R G+K + + M+ S+ P E +
Sbjct: 42 KEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDK--TDYMVGSYGPRAAAYEFLTPV 99
Query: 387 EEIEAGDIQRG 397
EE G + RG
Sbjct: 100 EEAPKGMLARG 110
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 29.4 bits (67), Expect = 3.2
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 58 YDVVVVGGGIVGVATARE 75
YD +V+GGG G+A+AR
Sbjct: 21 YDYLVIGGGSGGLASARR 38
Score = 29.4 bits (67), Expect = 3.3
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 10 YDMVVVGGGIVGVATARE 27
YD +V+GGG G+A+AR
Sbjct: 21 YDYLVIGGGSGGLASARR 38
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD;
1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 29.4 bits (67), Expect = 3.2
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 58 YDVVVVGGGIVGVATARE 75
YD + +GGG G+A+
Sbjct: 5 YDYIAIGGGSGGIASINR 22
Score = 29.0 bits (66), Expect = 3.3
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 10 YDMVVVGGGIVGVATARE 27
YD + +GGG G+A+
Sbjct: 5 YDYIAIGGGSGGIASINR 22
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural
genomics, PSI-2, protein structure initiative; HET:
ADP; 2.50A {Sulfolobus solfataricus}
Length = 466
Score = 29.1 bits (66), Expect = 3.3
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 58 YDVVVVGGGIVG-VATARELKLNYPKMKICLVEKEKELG 95
YDVVV+G G G R K K + + + + ELG
Sbjct: 5 YDVVVIGAGGAGYHGAFRLAKA---KYNVLMADPKGELG 40
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA,
GIDA; tRNA modification, FAD binding domain, structural
genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Length = 651
Score = 29.3 bits (67), Expect = 3.6
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 48 SMSSSQSPALYDVVVVGGGIVGV----ATAR 74
S P +DV+++GGG G A AR
Sbjct: 19 RGSHMFYPDPFDVIIIGGGHAGTEAAMAAAR 49
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 29.0 bits (66), Expect = 3.7
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 48 SMSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95
++ + YDV+V+GGG G+ A + L++K +LG
Sbjct: 17 NLYFQSNAMHYDVIVIGGGPSGLMAAIGAA--EEGANVLLLDKGNKLG 62
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase;
FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A
{Trypanosoma cruzi}
Length = 468
Score = 29.0 bits (66), Expect = 4.0
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 58 YDVVVVGGGIVG-VATARELKLNYPKMKICLVEKEKELG 95
YDVVV+GGG G VA+ + +L MK VEK LG
Sbjct: 3 YDVVVIGGGPGGYVASIKAAQLG---MKTACVEKRGALG 38
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II,
membrane protein, heme protein, iron sulfur PROT
cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL;
1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A*
2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A*
3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A*
3aea_A* 3aeb_A* 3aec_A* ...
Length = 621
Score = 28.8 bits (65), Expect = 4.1
Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEK 90
+D VVVG G G+ A L V K
Sbjct: 19 FDAVVVGAGGAGLRAAFGLS--EAGFNTACVTK 49
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase,
rubredoxin reductas NAD, flavoprotein, oxidoreductase;
HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Length = 384
Score = 28.7 bits (65), Expect = 4.3
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 5/28 (17%)
Query: 49 MSSSQSPALYDVVVVGGGIVGVATAREL 76
MS +V++G G+ G ARE
Sbjct: 1 MSERAP-----LVIIGTGLAGYNLAREW 23
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H,
structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia
psychrerythraea}
Length = 492
Score = 28.7 bits (65), Expect = 4.6
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
Query: 58 YDVVVVGGGIVG-VATARELKLNYPKMKICLVEKEKELG 95
DV ++G G G A K K+ L+E G
Sbjct: 9 VDVAIIGTGTAGMGAYRAAKKH---TDKVVLIEGGA-YG 43
Score = 28.3 bits (64), Expect = 5.7
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 4/36 (11%)
Query: 10 YDMVVVGGGIVG-VATARELKLKYPKMKTCLVEKEK 44
D+ ++G G G A K K L+E
Sbjct: 9 VDVAIIGTGTAGMGAYRAAKKH---TDKVVLIEGGA 41
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing
protein, flavoprotein, PS protein structure initiative;
HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8
e.74.1.1
Length = 401
Score = 28.6 bits (65), Expect = 4.6
Identities = 7/38 (18%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95
+ +++G G G+ A +L + + + K++G
Sbjct: 5 SENIIIGAGAAGLFCAAQLAKL--GKSVTVFDNGKKIG 40
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis,
electron transferase, oxidoreductase; HET: FAD; 1.70A
{Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A*
1e1m_A* 1e1n_A* 1e6e_A*
Length = 460
Score = 28.7 bits (64), Expect = 4.8
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 391 AGDIQRGPSGV----RAQALSSSGDLVDDFGVKAIHSP 424
+G ++RGP+GV + + L+ D + S
Sbjct: 365 SGWVKRGPTGVITTTMTDSFLTGQILLQDLKAGHLPSG 402
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 28.8 bits (65), Expect = 5.0
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 8/65 (12%)
Query: 37 TCLV------EKEKEFFSMSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEK 90
C E + + + V+VVG G G+ AR L + + L E
Sbjct: 365 RCTQNPSMGEEWRRGWHPERIRAKESDARVLVVGAGPSGLEAARALGVR--GYDVVLAEA 422
Query: 91 EKELG 95
++LG
Sbjct: 423 GRDLG 427
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain);
FAD-binding protein, GR-fold, oxidoreductase; HET: FAD;
2.10A {Clostridium acetobutylicum}
Length = 385
Score = 28.3 bits (64), Expect = 5.1
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 49 MSSSQSPALYDVVVVGGGIVGVATAREL 76
M ++++G G G + A+
Sbjct: 1 MHHHHHHKSTKILILGAGPAGFSAAKAA 28
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 28.5 bits (64), Expect = 5.3
Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 8/65 (12%)
Query: 37 TCLV----EKEKEFFSMSSSQSPALYD--VVVVGGGIVGVATARELKLNYPKMKICLVEK 90
C +E V++VG G G AR L + + L +
Sbjct: 363 ICTQNATAGEEYRRGWHPEKFRQTKNKDSVLIVGAGPSGSEAARVLMES--GYTVHLTDT 420
Query: 91 EKELG 95
+++G
Sbjct: 421 AEKIG 425
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD
binding protein, NADH binding protein, aromatic
hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas
putida}
Length = 410
Score = 28.3 bits (64), Expect = 5.5
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKEL 94
V ++G G+ G TA+ L+ + +I L+ E L
Sbjct: 4 HVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHL 39
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG;
modification, 5-carboxymethylaminomethyl uridine, WOBB
uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB:
2zxh_A* 2e57_A*
Length = 637
Score = 28.6 bits (65), Expect = 5.7
Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 4/21 (19%)
Query: 58 YDVVVVGGGIVGV----ATAR 74
+DVVV+GGG G+ A AR
Sbjct: 28 FDVVVIGGGHAGIEAALAAAR 48
>2iec_A Uncharacterized protein conserved in archaea; tetramer with
intra-molecular and inter-molecular disufide bonds,
structural genomics, PSI-2; 2.33A {Methanopyrus
kandleri} SCOP: d.316.1.1
Length = 131
Score = 27.1 bits (60), Expect = 6.0
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 60 VVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGH 101
V G +LNYP M + + + ++ G H H
Sbjct: 90 VTRCGEWEAVGKLEFIEELNYPLMWVEEIRRVEQEGHHHHHH 131
>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase,
hydride transfer, aldehyde dehydrogenase, PY
biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A*
2x5k_O*
Length = 339
Score = 28.2 bits (64), Expect = 6.3
Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 5/29 (17%)
Query: 415 DFGVKAIHSPHTGIVDWGLVTRVMGEEFC 443
DF H PH+ IVD G TRV G
Sbjct: 287 DF----NHDPHSAIVD-GTQTRVSGAHLI 310
>2cul_A Glucose-inhibited division protein A-related PROT probable
oxidoreductase; rossmann fold, protein-FAD complex;
HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Length = 232
Score = 28.0 bits (63), Expect = 6.3
Identities = 7/21 (33%), Positives = 10/21 (47%), Gaps = 4/21 (19%)
Query: 58 YDVVVVGGGIVGV----ATAR 74
Y V++VG G G A+
Sbjct: 4 YQVLIVGAGFSGAETAFWLAQ 24
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural
genomics, JCSG, protein structure initiative
biosynthetic protein; HET: MSE TLA PG4; 1.50A
{Shewanella frigidimarina}
Length = 526
Score = 28.1 bits (61), Expect = 6.4
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 10/43 (23%)
Query: 60 VVVVGGGIVGVATA----------RELKLNYPKMKICLVEKEK 92
+++VGGG G TA + + + PK+ I L+E
Sbjct: 10 IIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPD 52
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide
dehydrogenase, pyruvate dehydrogenase, alpha keto acid
dehydrogenase; HET: FAD; 2.40A {Mycobacterium
tuberculosis} PDB: 3ii4_A*
Length = 464
Score = 28.2 bits (64), Expect = 6.5
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 10 YDMVVVGGGIVG-VATARELKLKYPKMKTCLVEKEK 44
YD+VV+G G G VA R +L + T +VE +
Sbjct: 4 YDVVVLGAGPGGYVAAIRAAQL---GLSTAIVEPKY 36
Score = 27.5 bits (62), Expect = 10.0
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 58 YDVVVVGGGIVG-VATARELKLNYPKMKICLVEKEKELG 95
YDVVV+G G G VA R +L + +VE + G
Sbjct: 4 YDVVVLGAGPGGYVAAIRAAQL---GLSTAIVEPKY-WG 38
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; HET:
FDA; 2.51A {Sinorhizobium meliloti}
Length = 417
Score = 28.2 bits (64), Expect = 6.7
Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 48 SMSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95
SM + + DVV++G G G+ A E ++ +++ + G
Sbjct: 22 SMVAEK----QDVVIIGAGAAGMMCAIEAGKR--GRRVLVIDHARAPG 63
Score = 27.8 bits (63), Expect = 8.1
Identities = 10/52 (19%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAG 257
+ R++ E E G ++RL + + ++T G ++++ +V +G
Sbjct: 134 IIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAGT-VDAASLVVASG 184
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F
flavoprotein, oxidoreductase; HET: FAD; 2.20A
{Rhodopseudomonas palustris}
Length = 404
Score = 28.3 bits (64), Expect = 6.9
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 60 VVVVGGGIVGVATARELKLNYPKMKICLVEKEKEL 94
V++ G G G A L+ +I L+ EK L
Sbjct: 4 VLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHL 38
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate
dehydrogenase activity, cell inner membrane, trica acid
cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB:
1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A*
2wu2_A* 2wu5_A*
Length = 588
Score = 28.0 bits (63), Expect = 7.6
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 58 YDVVVVGGGIVGVATARELK 77
+D VV+G G G+ A ++
Sbjct: 8 FDAVVIGAGGAGMRAALQIS 27
>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain,
hormone/growth factor complex; 1.39A {Homo sapiens}
SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A
Length = 108
Score = 26.5 bits (58), Expect = 7.8
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 350 RYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEE 388
R FW ++ YG + +FPS V E +
Sbjct: 56 RGRLFWGGSVQGDYYGDLAARLGYFPSSIVREDQTLKPG 94
>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway,
oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A
{Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB:
3gnq_A*
Length = 335
Score = 27.8 bits (63), Expect = 8.7
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 5/25 (20%)
Query: 415 DFGVKAIHSPHTGIVDWGLVTRVMG 439
D+ H P + VD +T+V G
Sbjct: 286 DY----NHDPASSTVD-ASLTKVSG 305
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI;
2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A
2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Length = 377
Score = 27.8 bits (63), Expect = 9.0
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 60 VVVVGGGIVGVATAR 74
VVV+G G G AR
Sbjct: 171 VVVIGAGTAGYNAAR 185
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Length = 425
Score = 27.7 bits (62), Expect = 9.1
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 59 DVVVVGGGIVGVATAREL-KLNYPKMKICLVEKEKELG 95
VV+G G+ G+ +A L K + ++ + E+ G
Sbjct: 2 KTVVIGAGLGGLLSAARLSKAGH---EVEVFERLPITG 36
>1sqr_A 50S ribosomal protein L35AE; PFR48, structure, autostructure,
northeast structural genomics consortium, beta-barrel;
NMR {Pyrococcus furiosus} SCOP: b.43.3.3 PDB: 2lp6_A
Length = 95
Score = 26.3 bits (58), Expect = 9.3
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 161 YERSIQNNVKDVRLVSAEEIKTIE--PYCKGVKAIHSPNTGIVDWGLVTRVMG 211
Y RS +N +V ++ ++ + E G + +G + G + RV G
Sbjct: 10 YRRSKENQHNNVMIIKPLDVNSREEASKLIGRLVLWKSPSGKILKGKIVRVHG 62
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S,
4Fe-4S, citric acid cycle, dihaem cytochrome B; HET:
FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP:
a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A*
1qlb_A*
Length = 660
Score = 27.7 bits (62), Expect = 9.4
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 58 YDVVVVGGGIVGVATARELK 77
D +V+GGG+ G+ A +
Sbjct: 6 CDSLVIGGGLAGLRAAVATQ 25
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD;
2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB:
1pjb_A* 1say_A
Length = 361
Score = 27.4 bits (62), Expect = 9.7
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 60 VVVVGGGIVGVATAR 74
VV++GGG+VG A+
Sbjct: 170 VVILGGGVVGTEAAK 184
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation,
binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4
b.47.1.1
Length = 325
Score = 27.6 bits (62), Expect = 10.0
Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 6/61 (9%)
Query: 379 VNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFGVKAIHSPHTGIVDWG-LVTRV 437
++ ++ QR GV LS ++ + ++ P V G L+ +V
Sbjct: 209 LHRGEKKNSSSGISGSQRRYIGVMMLTLSP--SILAELQLR---EPSFPDVQHGVLIHKV 263
Query: 438 M 438
+
Sbjct: 264 I 264
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.137 0.409
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,511,160
Number of extensions: 471752
Number of successful extensions: 1969
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1929
Number of HSP's successfully gapped: 364
Length of query: 473
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 376
Effective length of database: 3,993,456
Effective search space: 1501539456
Effective search space used: 1501539456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.4 bits)