Query psy7711
Match_columns 577
No_of_seqs 375 out of 2685
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 16:51:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7711.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7711hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1872|consensus 100.0 6.2E-77 1.3E-81 585.0 20.2 454 12-577 4-459 (473)
2 cd02657 Peptidase_C19A A subfa 100.0 1.6E-58 3.4E-63 467.5 28.7 291 192-575 1-295 (305)
3 KOG1865|consensus 100.0 9.9E-58 2.2E-62 458.8 20.9 296 181-570 99-400 (545)
4 cd02663 Peptidase_C19G A subfa 100.0 1.1E-55 2.4E-60 444.3 25.5 272 192-574 1-288 (300)
5 cd02668 Peptidase_C19L A subfa 100.0 1E-54 2.2E-59 442.2 27.9 284 192-573 1-298 (324)
6 cd02664 Peptidase_C19H A subfa 100.0 9.7E-55 2.1E-59 441.9 26.0 290 192-575 1-317 (327)
7 cd02660 Peptidase_C19D A subfa 100.0 1.1E-53 2.5E-58 436.7 28.1 299 191-569 1-319 (328)
8 cd02671 Peptidase_C19O A subfa 100.0 1.2E-53 2.5E-58 431.2 26.4 274 183-572 17-317 (332)
9 cd02658 Peptidase_C19B A subfa 100.0 3.6E-52 7.8E-57 422.1 26.6 271 192-569 1-302 (311)
10 cd02661 Peptidase_C19E A subfa 100.0 9.2E-52 2E-56 418.6 25.4 287 190-570 1-296 (304)
11 cd02669 Peptidase_C19M A subfa 100.0 2.2E-51 4.7E-56 431.4 27.2 292 188-569 117-431 (440)
12 cd02659 peptidase_C19C A subfa 100.0 2.5E-51 5.5E-56 420.5 26.0 299 189-575 1-305 (334)
13 cd02667 Peptidase_C19K A subfa 100.0 3.5E-51 7.6E-56 407.0 22.6 240 192-569 1-270 (279)
14 cd02666 Peptidase_C19J A subfa 100.0 3.1E-46 6.8E-51 376.0 22.3 298 190-575 1-334 (343)
15 KOG1866|consensus 100.0 1.1E-47 2.5E-52 391.6 10.8 321 175-576 80-410 (944)
16 cd02662 Peptidase_C19F A subfa 100.0 7.8E-46 1.7E-50 359.8 20.6 202 192-568 1-229 (240)
17 COG5560 UBP12 Ubiquitin C-term 100.0 2.9E-47 6.3E-52 383.0 9.6 291 188-569 263-811 (823)
18 KOG0944|consensus 100.0 3.1E-45 6.8E-50 371.7 21.7 232 188-438 305-552 (763)
19 COG5533 UBP5 Ubiquitin C-termi 100.0 3.1E-45 6.8E-50 339.6 18.8 291 187-565 68-398 (415)
20 COG5077 Ubiquitin carboxyl-ter 100.0 8.6E-47 1.9E-51 385.5 5.5 317 156-577 162-486 (1089)
21 cd02665 Peptidase_C19I A subfa 100.0 4.7E-44 1E-48 337.6 17.5 193 282-574 21-216 (228)
22 PF00443 UCH: Ubiquitin carbox 100.0 1.9E-43 4.1E-48 350.5 19.7 251 190-573 1-262 (269)
23 KOG1868|consensus 100.0 1.9E-42 4.2E-47 365.3 14.1 297 182-568 293-634 (653)
24 KOG1867|consensus 100.0 1.9E-41 4.1E-46 352.3 20.9 372 111-571 76-475 (492)
25 cd02674 Peptidase_C19R A subfa 100.0 7.4E-41 1.6E-45 324.6 18.2 187 282-567 21-219 (230)
26 cd02673 Peptidase_C19Q A subfa 100.0 9.5E-41 2.1E-45 321.9 17.2 226 193-570 2-234 (245)
27 COG5207 UBP14 Isopeptidase T [ 100.0 9.1E-39 2E-43 314.0 19.5 259 158-435 268-539 (749)
28 cd02257 Peptidase_C19 Peptidas 100.0 2.9E-37 6.2E-42 302.8 20.2 233 192-570 1-242 (255)
29 KOG1863|consensus 100.0 1.9E-37 4.2E-42 353.8 14.4 295 185-576 165-465 (1093)
30 KOG1864|consensus 100.0 4E-36 8.8E-41 317.1 17.9 299 191-576 233-565 (587)
31 KOG1873|consensus 100.0 1.7E-35 3.7E-40 303.8 10.0 157 186-353 201-399 (877)
32 KOG4598|consensus 100.0 2.2E-35 4.7E-40 299.0 6.3 312 187-573 84-421 (1203)
33 PF13423 UCH_1: Ubiquitin carb 100.0 3E-32 6.5E-37 273.3 20.9 281 191-559 1-295 (295)
34 cd02672 Peptidase_C19P A subfa 100.0 6.5E-33 1.4E-37 271.1 13.3 229 187-564 12-260 (268)
35 KOG1870|consensus 100.0 5.2E-32 1.1E-36 302.0 10.4 160 186-354 242-427 (842)
36 cd02670 Peptidase_C19N A subfa 100.0 1.6E-30 3.5E-35 247.7 15.6 187 282-565 22-222 (241)
37 KOG1871|consensus 100.0 6.9E-29 1.5E-33 239.0 11.2 303 188-572 26-407 (420)
38 KOG2026|consensus 99.9 4.4E-21 9.5E-26 184.4 14.3 278 188-567 132-428 (442)
39 cd01813 UBP_N UBP ubiquitin pr 99.8 6E-21 1.3E-25 147.6 7.8 70 12-81 1-74 (74)
40 KOG1275|consensus 99.7 2.5E-17 5.4E-22 173.6 15.3 311 190-570 499-848 (1118)
41 cd01812 BAG1_N Ubiquitin-like 99.7 1.5E-16 3.2E-21 123.4 7.7 70 12-81 1-71 (71)
42 cd01791 Ubl5 UBL5 ubiquitin-li 99.7 3.3E-16 7.2E-21 120.4 7.7 69 11-79 1-71 (73)
43 cd01807 GDX_N ubiquitin-like d 99.6 2.2E-15 4.7E-20 117.5 6.8 70 12-81 1-72 (74)
44 cd01805 RAD23_N Ubiquitin-like 99.6 6.4E-15 1.4E-19 116.1 7.6 71 12-82 1-75 (77)
45 cd01793 Fubi Fubi ubiquitin-li 99.6 5.2E-15 1.1E-19 115.2 6.7 68 12-80 1-69 (74)
46 cd01804 midnolin_N Ubiquitin-l 99.5 1.5E-14 3.3E-19 113.5 7.9 72 12-83 2-74 (78)
47 cd01797 NIRF_N amino-terminal 99.5 1.2E-14 2.7E-19 113.6 6.9 72 12-83 1-76 (78)
48 cd01794 DC_UbP_C dendritic cel 99.5 1.5E-14 3.2E-19 110.6 6.1 65 15-79 2-68 (70)
49 cd01809 Scythe_N Ubiquitin-lik 99.5 2.6E-14 5.7E-19 111.1 7.2 68 12-79 1-70 (72)
50 cd01792 ISG15_repeat1 ISG15 ub 99.5 2.9E-14 6.4E-19 112.7 6.9 71 12-82 3-77 (80)
51 cd01790 Herp_N Homocysteine-re 99.5 3.6E-14 7.9E-19 109.3 6.7 69 12-80 2-78 (79)
52 cd01802 AN1_N ubiquitin-like d 99.5 5.1E-14 1.1E-18 116.0 7.6 71 10-80 26-98 (103)
53 cd01808 hPLIC_N Ubiquitin-like 99.5 6.9E-14 1.5E-18 108.0 6.3 69 12-80 1-70 (71)
54 cd01810 ISG15_repeat2 ISG15 ub 99.5 7.4E-14 1.6E-18 108.7 6.2 67 14-80 1-69 (74)
55 cd01800 SF3a120_C Ubiquitin-li 99.5 7.1E-14 1.5E-18 109.3 6.1 65 18-82 5-70 (76)
56 cd01798 parkin_N amino-termina 99.5 8.1E-14 1.8E-18 107.4 6.2 67 14-80 1-69 (70)
57 PTZ00044 ubiquitin; Provisiona 99.5 1.3E-13 2.9E-18 108.2 7.0 69 12-80 1-71 (76)
58 PF00240 ubiquitin: Ubiquitin 99.4 1.9E-13 4.2E-18 105.2 7.1 64 19-82 4-68 (69)
59 cd01796 DDI1_N DNA damage indu 99.4 1.9E-13 4E-18 105.3 6.4 65 14-78 1-69 (71)
60 cd01806 Nedd8 Nebb8-like ubiq 99.4 2.6E-13 5.7E-18 106.7 7.3 70 12-81 1-72 (76)
61 cd01803 Ubiquitin Ubiquitin. U 99.4 2.4E-13 5.2E-18 106.9 6.9 70 12-81 1-72 (76)
62 KOG0005|consensus 99.4 2.1E-13 4.5E-18 94.5 4.5 68 12-79 1-70 (70)
63 smart00213 UBQ Ubiquitin homol 99.4 1.4E-12 3E-17 98.8 6.2 63 12-74 1-64 (64)
64 TIGR00601 rad23 UV excision re 99.3 3E-12 6.5E-17 129.7 8.4 73 12-84 1-78 (378)
65 cd01815 BMSC_UbP_N Ubiquitin-l 99.3 3.1E-12 6.8E-17 97.0 4.8 52 29-80 19-74 (75)
66 KOG0010|consensus 99.3 6.5E-12 1.4E-16 126.6 7.4 73 11-83 15-88 (493)
67 cd01799 Hoil1_N Ubiquitin-like 99.2 2.9E-11 6.2E-16 93.6 6.6 60 19-79 11-73 (75)
68 cd01769 UBL Ubiquitin-like dom 99.2 4.7E-11 1E-15 91.8 6.9 66 16-81 2-69 (69)
69 KOG0011|consensus 99.2 2.4E-11 5.3E-16 116.1 6.2 73 12-84 1-77 (340)
70 cd01795 USP48_C USP ubiquitin- 99.1 8.9E-11 1.9E-15 91.8 6.0 59 22-80 16-76 (107)
71 cd01763 Sumo Small ubiquitin-r 99.1 4.6E-10 9.9E-15 90.1 8.7 75 6-80 6-82 (87)
72 KOG0003|consensus 99.1 3E-11 6.4E-16 94.8 1.6 68 12-79 2-70 (128)
73 KOG0004|consensus 99.0 1.7E-10 3.7E-15 98.3 3.2 68 12-79 1-70 (156)
74 cd01814 NTGP5 Ubiquitin-like N 99.0 5.7E-10 1.2E-14 90.5 4.2 73 10-82 3-91 (113)
75 cd01789 Alp11_N Ubiquitin-like 99.0 4.4E-09 9.5E-14 83.6 9.0 70 12-81 2-81 (84)
76 PF15499 Peptidase_C98: Ubiqui 98.9 1.2E-08 2.6E-13 94.7 11.1 176 194-403 6-199 (275)
77 PF14560 Ubiquitin_2: Ubiquiti 98.8 2.2E-08 4.7E-13 80.6 7.6 72 11-82 1-84 (87)
78 PF11976 Rad60-SLD: Ubiquitin- 98.7 6E-08 1.3E-12 75.1 7.4 68 12-79 1-71 (72)
79 cd02666 Peptidase_C19J A subfa 98.6 3.7E-08 8E-13 100.0 5.3 62 112-173 1-81 (343)
80 cd01801 Tsc13_N Ubiquitin-like 98.6 1.2E-07 2.6E-12 74.2 5.9 66 13-78 2-74 (77)
81 PLN02560 enoyl-CoA reductase 98.5 3.3E-07 7.1E-12 91.0 7.5 82 12-98 1-95 (308)
82 COG5560 UBP12 Ubiquitin C-term 98.4 4.9E-07 1.1E-11 93.6 7.5 144 23-169 159-330 (823)
83 cd02658 Peptidase_C19B A subfa 98.4 3.6E-07 7.9E-12 92.7 5.3 59 114-172 1-60 (311)
84 PF11543 UN_NPL4: Nuclear pore 98.4 1.2E-06 2.6E-11 68.5 6.7 71 8-78 1-77 (80)
85 cd02657 Peptidase_C19A A subfa 98.3 1.3E-06 2.9E-11 88.3 6.5 59 114-172 1-59 (305)
86 KOG1873|consensus 98.2 2.5E-06 5.4E-11 90.2 7.8 137 358-570 678-867 (877)
87 cd01788 ElonginB Ubiquitin-lik 98.2 5.2E-06 1.1E-10 67.2 7.0 68 12-79 3-78 (119)
88 cd02669 Peptidase_C19M A subfa 98.1 6.1E-06 1.3E-10 87.5 8.4 36 111-146 118-153 (440)
89 cd02661 Peptidase_C19E A subfa 98.1 6.9E-06 1.5E-10 82.9 8.2 56 112-168 1-56 (304)
90 cd02660 Peptidase_C19D A subfa 98.1 3.6E-06 7.8E-11 86.0 5.6 57 113-169 1-58 (328)
91 cd02664 Peptidase_C19H A subfa 98.1 4.3E-06 9.3E-11 85.3 5.7 52 114-168 1-52 (327)
92 KOG4248|consensus 98.1 4.2E-06 9E-11 91.7 5.6 69 12-81 3-73 (1143)
93 COG5533 UBP5 Ubiquitin C-termi 98.1 2.7E-05 5.8E-10 74.3 10.0 63 108-170 67-134 (415)
94 cd02671 Peptidase_C19O A subfa 98.0 2.6E-06 5.7E-11 86.6 2.9 36 110-145 22-57 (332)
95 PF00443 UCH: Ubiquitin carbox 98.0 4E-06 8.7E-11 82.5 3.9 61 112-172 1-65 (269)
96 KOG0944|consensus 98.0 2.7E-05 5.9E-10 81.7 10.0 67 110-176 305-372 (763)
97 KOG1865|consensus 98.0 3.1E-06 6.8E-11 87.3 3.1 59 107-166 103-161 (545)
98 cd02668 Peptidase_C19L A subfa 98.0 6.4E-06 1.4E-10 84.0 4.8 59 114-172 1-67 (324)
99 cd02659 peptidase_C19C A subfa 97.9 8.1E-06 1.8E-10 83.7 4.8 58 112-171 2-59 (334)
100 KOG0001|consensus 97.9 3.4E-05 7.4E-10 59.5 7.2 65 18-82 7-72 (75)
101 cd02667 Peptidase_C19K A subfa 97.9 5.3E-06 1.1E-10 82.6 2.9 30 114-143 1-30 (279)
102 cd00196 UBQ Ubiquitin-like pro 97.9 3.6E-05 7.8E-10 57.2 6.2 62 19-80 6-68 (69)
103 PF13881 Rad60-SLD_2: Ubiquiti 97.8 0.00013 2.8E-09 60.9 8.5 72 11-82 2-89 (111)
104 cd02662 Peptidase_C19F A subfa 97.8 1.3E-05 2.8E-10 77.9 3.1 32 114-145 1-32 (240)
105 KOG3493|consensus 97.5 4.6E-05 9.9E-10 54.5 1.8 67 12-78 2-70 (73)
106 cd01811 OASL_repeat1 2'-5' oli 97.4 0.00075 1.6E-08 50.2 6.6 69 12-81 1-76 (80)
107 KOG0006|consensus 97.4 0.00029 6.2E-09 67.3 5.7 67 13-79 2-75 (446)
108 KOG3206|consensus 97.4 0.00059 1.3E-08 61.4 7.2 93 12-104 2-104 (234)
109 cd02663 Peptidase_C19G A subfa 97.3 0.00012 2.6E-09 73.8 2.9 20 114-133 1-20 (300)
110 KOG1863|consensus 97.3 0.0003 6.5E-09 82.2 5.7 72 102-174 160-231 (1093)
111 KOG1871|consensus 97.1 0.00037 8.1E-09 69.0 3.3 51 93-143 9-59 (420)
112 PF08817 YukD: WXG100 protein 96.9 0.0018 4E-08 50.8 5.3 68 11-78 2-78 (79)
113 KOG1868|consensus 96.9 0.0011 2.3E-08 72.1 5.2 66 106-171 295-363 (653)
114 KOG1864|consensus 96.9 0.0014 3.1E-08 70.8 5.6 107 193-305 34-156 (587)
115 KOG1872|consensus 96.7 0.0004 8.6E-09 70.6 0.1 33 188-220 103-135 (473)
116 KOG4495|consensus 96.7 0.011 2.3E-07 46.4 7.6 59 12-70 3-64 (110)
117 KOG1887|consensus 96.4 0.0014 3E-08 71.1 1.7 52 519-574 724-778 (806)
118 PF11470 TUG-UBL1: GLUT4 regul 96.3 0.0096 2.1E-07 44.3 5.1 64 15-78 1-65 (65)
119 COG5417 Uncharacterized small 96.1 0.033 7E-07 41.6 6.9 67 12-78 5-80 (81)
120 COG5207 UBP14 Isopeptidase T [ 95.9 0.0072 1.6E-07 61.9 3.9 56 517-572 683-741 (749)
121 PF10302 DUF2407: DUF2407 ubiq 95.9 0.016 3.5E-07 47.1 5.1 57 14-70 3-66 (97)
122 PF13423 UCH_1: Ubiquitin carb 95.8 0.047 1E-06 54.8 9.1 75 113-214 1-75 (295)
123 KOG1639|consensus 95.2 0.034 7.4E-07 51.8 5.4 68 12-79 1-77 (297)
124 cd02674 Peptidase_C19R A subfa 95.2 0.0078 1.7E-07 57.9 1.1 20 114-133 1-20 (230)
125 KOG1769|consensus 94.9 0.19 4.2E-06 40.2 8.0 72 11-82 20-93 (99)
126 COG5077 Ubiquitin carboxyl-ter 94.7 0.028 6.1E-07 60.5 3.7 62 111-175 192-253 (1089)
127 KOG1870|consensus 94.5 0.018 3.9E-07 65.8 2.0 130 356-569 694-830 (842)
128 PF00789 UBX: UBX domain; Int 94.3 0.31 6.8E-06 38.3 8.2 70 9-78 4-80 (82)
129 cd02672 Peptidase_C19P A subfa 94.2 0.057 1.2E-06 53.2 4.4 51 112-166 15-65 (268)
130 cd02257 Peptidase_C19 Peptidas 93.8 0.023 5E-07 54.8 0.9 20 114-133 1-20 (255)
131 smart00166 UBX Domain present 93.4 0.61 1.3E-05 36.5 8.2 68 11-78 4-78 (80)
132 PF05408 Peptidase_C28: Foot-a 92.9 0.057 1.2E-06 48.2 1.8 34 525-563 130-163 (193)
133 KOG0013|consensus 92.8 0.14 3.1E-06 46.6 4.2 68 13-80 149-217 (231)
134 PF08715 Viral_protease: Papai 92.3 0.28 6.2E-06 49.0 6.1 78 189-299 101-179 (320)
135 cd01770 p47_UBX p47-like ubiqu 92.0 1.1 2.5E-05 34.9 7.9 65 11-75 4-74 (79)
136 cd01767 UBX UBX (ubiquitin reg 91.3 1.5 3.3E-05 33.9 8.0 66 11-78 2-74 (77)
137 cd01773 Faf1_like1_UBX Faf1 ik 90.9 2.1 4.6E-05 33.5 8.3 68 10-78 4-78 (82)
138 smart00666 PB1 PB1 domain. Pho 90.9 1 2.2E-05 35.2 6.8 46 12-57 2-47 (81)
139 KOG1867|consensus 90.5 0.29 6.3E-06 52.2 4.3 62 112-173 161-222 (492)
140 PRK06437 hypothetical protein; 90.0 1.5 3.3E-05 32.9 6.7 53 19-79 9-61 (67)
141 PRK08364 sulfur carrier protei 89.9 1.8 3.9E-05 32.9 7.1 59 11-79 4-64 (70)
142 cd06406 PB1_P67 A PB1 domain i 89.9 1.1 2.3E-05 34.8 5.7 43 14-57 5-47 (80)
143 cd01772 SAKS1_UBX SAKS1-like U 89.8 2 4.3E-05 33.5 7.5 67 11-78 4-77 (79)
144 cd01771 Faf1_UBX Faf1 UBX doma 89.8 2.6 5.6E-05 33.0 8.0 67 11-78 4-77 (80)
145 PF00564 PB1: PB1 domain; Int 89.4 1.5 3.3E-05 34.4 6.7 47 11-57 1-48 (84)
146 cd01774 Faf1_like2_UBX Faf1 ik 89.3 2.9 6.4E-05 33.1 8.1 68 10-78 3-82 (85)
147 PF14836 Ubiquitin_3: Ubiquiti 87.5 2.2 4.7E-05 33.8 6.1 57 21-78 14-77 (88)
148 PRK06488 sulfur carrier protei 87.5 2 4.3E-05 32.0 5.8 58 15-79 2-59 (65)
149 PF15044 CLU_N: Mitochondrial 86.8 1 2.2E-05 34.9 3.9 53 27-79 1-56 (76)
150 cd06407 PB1_NLP A PB1 domain i 86.2 3.1 6.8E-05 32.7 6.4 37 12-48 1-37 (82)
151 PF13019 Telomere_Sde2: Telome 86.0 3.3 7E-05 36.9 7.1 62 12-73 1-72 (162)
152 KOG0012|consensus 85.2 1.9 4.1E-05 43.0 5.8 64 21-84 13-79 (380)
153 PRK06083 sulfur carrier protei 84.8 4.3 9.4E-05 32.0 6.7 63 11-79 16-78 (84)
154 cd00565 ThiS ThiaminS ubiquiti 84.7 2.6 5.6E-05 31.4 5.2 57 17-79 3-59 (65)
155 KOG4583|consensus 83.9 0.44 9.5E-06 46.7 0.8 62 11-72 9-76 (391)
156 PF12754 Blt1: Cell-cycle cont 83.5 0.35 7.5E-06 47.4 0.0 74 11-84 78-184 (309)
157 cd05992 PB1 The PB1 domain is 83.1 3.7 8E-05 31.9 5.8 45 13-57 2-47 (81)
158 KOG1866|consensus 83.1 0.81 1.8E-05 49.7 2.5 63 108-170 91-154 (944)
159 PF05408 Peptidase_C28: Foot-a 81.0 1.1 2.4E-05 40.2 2.2 21 191-211 34-54 (193)
160 TIGR01683 thiS thiamine biosyn 80.5 4.2 9.1E-05 30.1 4.9 55 19-79 4-58 (64)
161 PLN02799 Molybdopterin synthas 80.4 5.3 0.00011 31.2 5.8 65 11-79 1-76 (82)
162 PRK05863 sulfur carrier protei 80.2 6.4 0.00014 29.3 5.8 58 15-79 2-59 (65)
163 cd06408 PB1_NoxR The PB1 domai 80.0 11 0.00024 29.8 7.2 36 12-47 3-38 (86)
164 PRK05659 sulfur carrier protei 79.8 7.3 0.00016 29.0 6.1 59 15-79 2-60 (66)
165 cd02673 Peptidase_C19Q A subfa 79.7 0.73 1.6E-05 44.7 0.7 25 115-139 2-26 (245)
166 COG2104 ThiS Sulfur transfer p 79.1 8.2 0.00018 29.1 6.0 60 14-79 3-62 (68)
167 cd06396 PB1_NBR1 The PB1 domai 78.1 10 0.00022 29.6 6.3 36 12-47 1-38 (81)
168 KOG3556|consensus 76.7 5.2 0.00011 41.9 5.7 26 189-214 367-392 (724)
169 PRK07440 hypothetical protein; 76.6 13 0.00027 28.2 6.6 60 14-79 5-64 (70)
170 cd00754 MoaD Ubiquitin domain 76.2 9.7 0.00021 29.4 6.1 55 21-79 16-74 (80)
171 cd02665 Peptidase_C19I A subfa 75.7 1.3 2.7E-05 42.5 1.0 20 114-133 1-20 (228)
172 COG0089 RplW Ribosomal protein 75.4 11 0.00023 30.4 6.0 60 21-80 22-92 (94)
173 PRK07696 sulfur carrier protei 73.0 12 0.00027 28.0 5.7 59 15-79 2-61 (67)
174 PRK08053 sulfur carrier protei 72.1 17 0.00037 27.1 6.2 59 15-79 2-60 (66)
175 TIGR02958 sec_mycoba_snm4 secr 71.3 23 0.00051 37.7 9.4 71 12-82 3-81 (452)
176 PRK06944 sulfur carrier protei 70.8 22 0.00048 26.2 6.7 58 15-79 2-59 (65)
177 PF14453 ThiS-like: ThiS-like 70.6 34 0.00074 24.7 7.0 52 16-79 3-54 (57)
178 KOG4361|consensus 68.8 2.3 5.1E-05 42.8 1.2 75 9-83 59-140 (344)
179 KOG4250|consensus 68.1 9.7 0.00021 41.8 5.6 41 19-59 323-363 (732)
180 cd06397 PB1_UP1 Uncharacterize 67.7 18 0.00039 28.0 5.4 43 13-55 2-44 (82)
181 cd06398 PB1_Joka2 The PB1 doma 67.1 25 0.00055 28.2 6.6 44 13-56 2-51 (91)
182 PRK01777 hypothetical protein; 66.9 30 0.00064 28.0 7.0 64 9-80 1-75 (95)
183 PF02597 ThiS: ThiS family; I 66.7 13 0.00029 28.3 4.9 57 22-79 13-71 (77)
184 TIGR01687 moaD_arch MoaD famil 65.1 30 0.00065 27.3 6.8 56 21-79 16-82 (88)
185 TIGR01682 moaD molybdopterin c 62.1 34 0.00075 26.4 6.5 54 22-79 17-74 (80)
186 CHL00030 rpl23 ribosomal prote 61.2 23 0.00051 28.5 5.3 39 20-58 19-58 (93)
187 KOG2982|consensus 60.8 13 0.00029 36.6 4.5 66 13-78 338-414 (418)
188 PF01473 CW_binding_1: Putativ 59.8 9.1 0.0002 20.6 2.0 15 542-557 2-16 (19)
189 COG5100 NPL4 Nuclear pore prot 55.7 52 0.0011 33.6 7.7 69 13-81 2-79 (571)
190 COG5227 SMT3 Ubiquitin-like pr 54.2 58 0.0013 25.7 6.1 68 12-79 25-94 (103)
191 PRK05738 rplW 50S ribosomal pr 50.6 36 0.00079 27.3 4.9 39 20-58 20-59 (92)
192 cd06404 PB1_aPKC PB1 domain is 50.0 52 0.0011 25.8 5.4 38 12-49 1-38 (83)
193 PF00276 Ribosomal_L23: Riboso 50.0 25 0.00055 28.2 3.9 39 21-59 21-60 (91)
194 cd06409 PB1_MUG70 The MUG70 pr 49.5 52 0.0011 26.1 5.4 42 14-55 3-48 (86)
195 PF02099 Josephin: Josephin; 48.8 20 0.00043 32.1 3.4 33 523-561 98-130 (157)
196 PRK11840 bifunctional sulfur c 48.3 46 0.00099 33.5 6.1 59 15-79 2-60 (326)
197 PF14451 Ub-Mut7C: Mut7-C ubiq 47.2 42 0.0009 26.3 4.6 52 20-79 22-74 (81)
198 PF10790 DUF2604: Protein of U 45.6 73 0.0016 23.4 5.1 64 19-82 4-72 (76)
199 smart00144 PI3K_rbd PI3-kinase 45.3 1.3E+02 0.0029 24.8 7.7 70 10-79 16-102 (108)
200 cd06411 PB1_p51 The PB1 domain 45.2 50 0.0011 25.6 4.5 36 22-57 8-43 (78)
201 KOG2561|consensus 43.8 11 0.00024 38.8 1.2 72 10-81 36-111 (568)
202 PRK12280 rplW 50S ribosomal pr 43.8 71 0.0015 28.5 6.0 64 21-84 23-96 (158)
203 KOG2026|consensus 41.0 16 0.00034 37.1 1.7 34 111-144 133-166 (442)
204 TIGR03636 L23_arch archaeal ri 40.6 53 0.0012 25.4 4.2 34 21-54 15-48 (77)
205 PRK14548 50S ribosomal protein 39.4 55 0.0012 25.8 4.2 34 21-54 22-55 (84)
206 KOG2086|consensus 39.2 79 0.0017 32.3 6.3 65 11-75 305-375 (380)
207 PF11620 GABP-alpha: GA-bindin 37.7 67 0.0015 25.2 4.2 58 22-79 4-62 (88)
208 PF10748 DUF2531: Protein of u 36.0 44 0.00096 28.8 3.4 32 521-558 35-66 (132)
209 PF14353 CpXC: CpXC protein 35.1 48 0.001 28.4 3.6 48 328-384 1-49 (128)
210 PF14533 USP7_C2: Ubiquitin-sp 34.3 1.3E+02 0.0027 28.5 6.6 56 13-68 20-90 (213)
211 cd06410 PB1_UP2 Uncharacterize 33.7 1.2E+02 0.0025 24.8 5.3 39 16-55 17-56 (97)
212 PRK11130 moaD molybdopterin sy 33.5 1.8E+02 0.004 22.4 6.4 51 25-79 19-75 (81)
213 KOG1275|consensus 32.4 83 0.0018 35.9 5.5 53 112-170 499-551 (1118)
214 KOG2906|consensus 31.7 68 0.0015 25.8 3.5 23 373-395 65-87 (105)
215 PF04126 Cyclophil_like: Cyclo 31.1 47 0.001 28.2 2.8 29 12-40 1-29 (120)
216 COG3478 Predicted nucleic-acid 31.0 45 0.00098 24.5 2.2 33 375-407 6-40 (68)
217 KOG4842|consensus 30.6 16 0.00035 34.8 -0.1 47 11-57 3-49 (278)
218 cd01775 CYR1_RA Ubiquitin doma 28.6 1.6E+02 0.0035 23.8 5.2 68 14-81 5-87 (97)
219 PRK11433 aldehyde oxidoreducta 27.8 1.2E+02 0.0027 28.6 5.2 39 9-47 47-85 (217)
220 KOG2689|consensus 27.1 1.4E+02 0.0031 29.0 5.5 68 11-78 210-284 (290)
221 PF12252 SidE: Dot/Icm substra 27.0 61 0.0013 37.5 3.4 31 526-556 51-81 (1439)
222 KOG1257|consensus 26.1 71 0.0015 34.1 3.6 151 42-204 302-475 (582)
223 PRK09908 xanthine dehydrogenas 26.0 1.2E+02 0.0025 27.2 4.5 36 11-47 6-41 (159)
224 COG0093 RplN Ribosomal protein 25.6 1.1E+02 0.0025 25.6 3.9 34 523-565 57-90 (122)
225 KOG0007|consensus 24.7 30 0.00065 35.4 0.6 47 17-63 289-336 (341)
226 PF10209 DUF2340: Uncharacteri 24.2 1.2E+02 0.0027 25.6 4.0 30 27-56 22-62 (122)
227 COG3640 CooC CO dehydrogenase 23.9 1.4E+02 0.0029 28.8 4.7 54 31-84 54-109 (255)
228 PF02192 PI3K_p85B: PI3-kinase 23.7 91 0.002 24.2 3.0 22 23-44 2-23 (78)
229 PF00794 PI3K_rbd: PI3-kinase 23.3 2.5E+02 0.0054 23.0 5.8 70 10-79 15-100 (106)
230 cd02670 Peptidase_C19N A subfa 23.0 40 0.00086 32.6 1.1 20 114-133 1-21 (241)
231 PTZ00380 microtubule-associate 22.7 93 0.002 26.4 3.0 42 26-68 46-89 (121)
232 KOG4598|consensus 22.6 1.3E+02 0.0028 33.3 4.7 75 23-101 879-961 (1203)
233 cd01764 Urm1 Urm1-like ubuitin 21.6 3.2E+02 0.007 21.9 5.9 53 25-79 23-88 (94)
234 smart00295 B41 Band 4.1 homolo 20.6 2.5E+02 0.0054 25.8 6.0 37 11-47 3-40 (207)
235 cd02420 Peptidase_C39D A sub-f 20.4 1.8E+02 0.0039 24.2 4.6 36 537-572 83-119 (125)
236 cd06405 PB1_Mekk2_3 The PB1 do 20.0 2.7E+02 0.0059 21.3 4.6 38 12-49 1-38 (79)
No 1
>KOG1872|consensus
Probab=100.00 E-value=6.2e-77 Score=585.01 Aligned_cols=454 Identities=40% Similarity=0.624 Sum_probs=395.3
Q ss_pred EEEEEEeCCeEEEEE-eCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEeccccCCCCCC
Q psy7711 12 YIVKVKWGKETFEVD-VDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGSKEEDSMKE 89 (577)
Q Consensus 12 ~~i~vk~~~~~~~~~-v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs~~~~~~~~ 89 (577)
..|.|||+|+.|+++ ++.++|+.+||++|+.+|||||+|||+|++|+.++|| .|..++||+|.|||||||+++ .+.+
T Consensus 4 ~~v~VKW~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~e~-~~e~ 82 (473)
T KOG1872|consen 4 DTVIVKWGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTAEA-GLEP 82 (473)
T ss_pred ceEeeeecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeeccccc-cccC
Confidence 449999999999987 9999999999999999999999999999999999999 999999999999999999999 8888
Q ss_pred ccccccccccchhhHhhhcCCCCcccccCCCCcchhhHHHhhcCCHHHHHHHHhhhCCCCCCCCchhHHHHHHHHHhhhc
Q psy7711 90 PVVKPKFVEDMNESERAVSLDLPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECM 169 (577)
Q Consensus 90 ~~~~~~~~ed~~~~~~~~~~~~~~gl~n~g~~cy~ns~~q~l~~~p~l~~~~~~~~~~~~~~~~p~~~~~~~l~~l~~~~ 169 (577)
|..+..|++|+++++.+....+|+|+.|+|||||||+++||+..+|+|+.++..+.......
T Consensus 83 p~~~~~~~ed~~e~~~~~~~~lp~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~------------------ 144 (473)
T KOG1872|consen 83 PSLPPTFIEDSAEQFASAALPLPVGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGRG------------------ 144 (473)
T ss_pred cccCCcchhhhhHHHHHhhccCCccccchhHHHHhhhhhhhhhcCccCcchhhccchhccCC------------------
Confidence 99999999999988888889999999999999999999999999999998887665322110
Q ss_pred ccCCCCCCCCchhhhcccccccccCCCCCchhHHHHHHHhhccHHHHHHHHhhcCCCCCCCCChhhHHHHHHHHHHHHhc
Q psy7711 170 DNMKISPSISPFIMLQGRYLPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDN 249 (577)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~l~~~L~~Lf~~l~~ 249 (577)
........+..+++.+|..|..
T Consensus 145 ----------------------------------------------------------~t~~~a~~i~~~mR~~f~~~~~ 166 (473)
T KOG1872|consen 145 ----------------------------------------------------------DTWERRRRISIETRTCFRPLCE 166 (473)
T ss_pred ----------------------------------------------------------chhhhhhhHHHHHHHHHHhhhc
Confidence 0001145688899999999998
Q ss_pred CCCCCCCChHHHHHHHHhhCCccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCCCccchhhhccceEEeEEE
Q psy7711 250 MKISPSISPFIMLQVLHNVFPRFADKTDDGSYMQQDANECWTEMVRMLKTALPGENEEGQDSAKSSFIEQYFYTIMDTEL 329 (577)
Q Consensus 250 ~~~~~~i~P~~~~~~l~~~~~~f~~~~~~~~~~QqDA~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~i~~lF~g~~~~~~ 329 (577)
+ +.+.|..+++.+++.+|+|.+....|.+.||||.|++..++-.+++.+....... .....++.+|++.+..+.
T Consensus 167 ~---~~v~pi~llqtl~~~~Pqfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~~~---~~~~~~d~~f~~~~~~t~ 240 (473)
T KOG1872|consen 167 K---GAVAPINLLQTLSSQYPQFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATEAP---CLEAEAAAGFGAEFSTTM 240 (473)
T ss_pred c---CCcchHHHHHHHHHHhHHHHHHhhhhhHHHHHHhHhHHHhhhheecccccccccc---chhHHHHHhhccccccce
Confidence 5 6899999999999999999987777889999999999999999999877654322 445678999999999999
Q ss_pred EcCCCCCCCCCcccccceeeeeccCCCccchhHHHhhhhhhhhhccCcCCCCCceEEEEEEeccCCCceEEEEEEEEEec
Q psy7711 330 KCSESETEPPTKGTESFQQLSCYITTDVKYMLPGLKNKLQDQITKRSPSLDRDAVYVKTSKVSRLPAYLTIQFVRFFYKE 409 (577)
Q Consensus 330 ~C~~c~~~~~s~~~e~f~~L~l~i~~~~~~l~~~l~~~~~e~i~~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~ 409 (577)
.|...+.+......|.|+.|.|.|...+..+..+|+..++|++.+.++..|+++.|.|...|.+||.||+|++.||+|+.
T Consensus 241 ~~~e~e~~~~~~~~E~~~~L~c~i~~~~~~~k~Gl~~~~~e~~~K~s~~lgr~a~y~k~~~isrlP~ylTvq~vrf~~k~ 320 (473)
T KOG1872|consen 241 SCSEGEDEGGGAGRELVDQLKCIINKTVHDMRFGLKSGLSEEIQKISSILGRPAAYQKVMYISRLPEYLTVQEVRFFSKA 320 (473)
T ss_pred eeccCcccccccccccccccceEEeeeechhhhhhhhhhhhhhhccCcccCCChHHHHHhHhhcCcccceEEEEEEEecc
Confidence 99988876555558999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccCCccccccccCCHHHHhccccchHHHHHHHHHHHHHHHhhhhcccCCCchhhhhhhcccccCCcccc
Q psy7711 410 KERINAKVLKDIKFPIEFDAYELCTPELQAKLAPMREKFKIAEEKEAFEEFRTQYVFISIPMDEIYVRFGQKIYAPVGDR 489 (577)
Q Consensus 410 ~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 489 (577)
..++..||.+.|.||..||..++|++++++++.+.|+++++.+++..+.....+.........+. . .++
T Consensus 321 k~~~~akil~~V~fP~~ld~~d~ct~el~~k~~~~r~k~r~~edkk~~~~~~~k~~~~~~~~~~~--~-----~e~---- 389 (473)
T KOG1872|consen 321 KIMVVAKILNAVNFPKDLDQQDLCTPELKKKLLCRRKKHRKVEDKKKEEDVMPKVKGAQERLKEV--P-----LEG---- 389 (473)
T ss_pred ccchHHHHHHhccChhhhhHHHhhCHHhhcCccchHHHHHHHHhcCCchhhcccccCcCcccccc--c-----ccc----
Confidence 99999999999999999999999999999999999999999998877666533222111111110 0 000
Q ss_pred ccccccccchhcccCCCCCCCCCCCCCCCceeEEEeEEEEeecCCCCCCceEEEEECCCCcEEEEeCCcceecChhhhhc
Q psy7711 490 IQDFGVKSTEFQSRGQGSSPGRVDIGSNNSGYYTLQAVLTHKGRTSSSGHYVAWVKKPNGTWIKCDDDKVYPISEEEVLK 569 (577)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~~GHY~a~vr~~~~~W~~~nD~~V~~v~~~~V~~ 569 (577)
..-.++.+++.++.|.|+|||+|.|+|..+|||++|+|...+.|++|||+.|+.+..++|++
T Consensus 390 ------------------~~~~~~~~s~~~g~y~l~~vithkgrss~sghy~aw~r~s~~~w~~fdd~~vs~v~~e~i~~ 451 (473)
T KOG1872|consen 390 ------------------MYNKSGGKSRNSGLYDLQLVITHKGRSSKSGHYVAWNRVSEDKWGHFDDDMVSFVLGETILS 451 (473)
T ss_pred ------------------hhccccccccccceeeeeEeeeccccccCCCcceEEEeccCCceeeccccccccccccceee
Confidence 00023334445889999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q psy7711 570 LSGGGKVI 577 (577)
Q Consensus 570 ~~~Gg~~~ 577 (577)
++|||||+
T Consensus 452 lsgggd~~ 459 (473)
T KOG1872|consen 452 LSGGGDWH 459 (473)
T ss_pred ecCCCccc
Confidence 99999995
No 2
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.6e-58 Score=467.54 Aligned_cols=291 Identities=52% Similarity=0.972 Sum_probs=257.4
Q ss_pred ccCCCCCchhHHHHHHHhhccHHHHHHHHhhcCCCCCCCCChhhHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHhhCCc
Q psy7711 192 GLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDNMKISPSISPFIMLQVLHNVFPR 271 (577)
Q Consensus 192 GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~l~~~L~~Lf~~l~~~~~~~~i~P~~~~~~l~~~~~~ 271 (577)
||.|+||||||||+||+|+++|+||+++++.............++.++|+.||..|+.+ ...++|..|+..++...+.
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~--~~~i~p~~~~~~l~~~~~~ 78 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNALRDLFDTMDKK--QEPVPPIEFLQLLRMAFPQ 78 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhC--CCcCCcHHHHHHHHHHCcC
Confidence 89999999999999999999999999998876543222345578999999999999987 5589999999999999999
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCCCccchhhhccceEEeEEEEcCCCC-CCCCCcccccceeee
Q psy7711 272 FADKTDDGSYMQQDANECWTEMVRMLKTALPGENEEGQDSAKSSFIEQYFYTIMDTELKCSESE-TEPPTKGTESFQQLS 350 (577)
Q Consensus 272 f~~~~~~~~~~QqDA~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~i~~lF~g~~~~~~~C~~c~-~~~~s~~~e~f~~L~ 350 (577)
|.+....+.++||||+||+..||+.|++++... ....++|.++|+|++.+.++|..|+ . .+.+.|+|+.|+
T Consensus 79 f~~~~~~~~~~QqDA~EFl~~lld~L~~~~~~~------~~~~~~i~~~F~g~~~~~~~C~~C~~~--~~~~~e~f~~Ls 150 (305)
T cd02657 79 FAEKQNQGGYAQQDAEECWSQLLSVLSQKLPGA------GSKGSFIDQLFGIELETKMKCTESPDE--EEVSTESEYKLQ 150 (305)
T ss_pred cccccCCCCccccCHHHHHHHHHHHHHHHhccc------CCCCcHHHHhhceEEEEEEEcCCCCCC--CccccccceEEE
Confidence 975433246799999999999999999998642 2246789999999999999999999 5 467889999999
Q ss_pred eccCCC--ccchhHHHhhhhhhhhhccCcCCCCCceEEEEEEeccCCCceEEEEEEEEEeccccccccccccccCCcccc
Q psy7711 351 CYITTD--VKYMLPGLKNKLQDQITKRSPSLDRDAVYVKTSKVSRLPAYLTIQFVRFFYKEKERINAKVLKDIKFPIEFD 428 (577)
Q Consensus 351 l~i~~~--~~~l~~~l~~~~~e~i~~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~V~fp~~Ld 428 (577)
++|+.. ..+|.++|..++++++...|+.|++...+.|+..|.++|++|+|||+||.|+...+...|+..+|.||.+||
T Consensus 151 l~i~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fP~~Ld 230 (305)
T cd02657 151 CHISITTEVNYLQDGLKKGLEEEIEKHSPTLGRDAIYTKTSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKFPFELD 230 (305)
T ss_pred eecCCCcccccHHHHHHHhhhhhhhhcCcccCCCceEEEEEEeccCCcEEEEEEECCccccccCceeecCcEEECCceEe
Confidence 999865 568999999999998888999999999999999999999999999999999987778899999999999999
Q ss_pred ccccCCHHHHhccccchHHHHHHHHHHHHHHHhhhhcccCCCchhhhhhhcccccCCccccccccccccchhcccCCCCC
Q psy7711 429 AYELCTPELQAKLAPMREKFKIAEEKEAFEEFRTQYVFISIPMDEIYVRFGQKIYAPVGDRIQDFGVKSTEFQSRGQGSS 508 (577)
Q Consensus 429 l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 508 (577)
|.+|+..
T Consensus 231 l~~~~~~------------------------------------------------------------------------- 237 (305)
T cd02657 231 LYELCTP------------------------------------------------------------------------- 237 (305)
T ss_pred cccccCC-------------------------------------------------------------------------
Confidence 9877531
Q ss_pred CCCCCCCCCCceeEEEeEEEEeecCCCCCCceEEEEECCC-CcEEEEeCCcceecChhhhhccCCCCC
Q psy7711 509 PGRVDIGSNNSGYYTLQAVLTHKGRTSSSGHYVAWVKKPN-GTWIKCDDDKVYPISEEEVLKLSGGGK 575 (577)
Q Consensus 509 ~~~~~~~~~~~~~Y~L~aVI~H~G~s~~~GHY~a~vr~~~-~~W~~~nD~~V~~v~~~~V~~~~~Gg~ 575 (577)
+..|+|+|||+|.|.++++|||+||+|..+ +.||+|||+.|+++++++|++..|||.
T Consensus 238 ----------~~~Y~L~~vI~H~G~~~~~GHY~~~~~~~~~~~W~~fdD~~V~~~~~~~v~~~~~~~~ 295 (305)
T cd02657 238 ----------SGYYELVAVITHQGRSADSGHYVAWVRRKNDGKWIKFDDDKVSEVTEEDILKLSGGGD 295 (305)
T ss_pred ----------CCcEEEEEEEEecCCCCCCcEEEEEEEcCCCCeEEEEECCceEEeCHHHHHhhcCCCC
Confidence 237999999999998899999999999964 999999999999999999999988885
No 3
>KOG1865|consensus
Probab=100.00 E-value=9.9e-58 Score=458.78 Aligned_cols=296 Identities=26% Similarity=0.354 Sum_probs=261.7
Q ss_pred hhhhcccccccccCCCCCchhHHHHHHHhhccHHHHHHHHhhcCCCCCCCCChhhHHHHHHHHHHHHhcCCCCCCCChHH
Q psy7711 181 FIMLQGRYLPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDNMKISPSISPFI 260 (577)
Q Consensus 181 ~~~~~~~~~~~GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~l~~~L~~Lf~~l~~~~~~~~i~P~~ 260 (577)
+.+.+....++||.|+|||||+|||||||.++|++.++|+...+...+. ....|+.|+|+.......... ..+++|..
T Consensus 99 ~~~~~~~~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~-~~~~C~lc~~q~hi~~A~~~~-g~pisP~~ 176 (545)
T KOG1865|consen 99 LSSDRPAAVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCH-RAKFCMLCTFQAHITRALHNP-GHPISPSQ 176 (545)
T ss_pred ccccccccCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhcc-ccCeeeehHHHHHHHHHhcCC-CCccChHH
Confidence 5566677889999999999999999999999999999999877766544 466799999999887776653 45999999
Q ss_pred HHHHHHhhCCccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCC-CCCCCCCCccchhhhccceEEeEEEEcCCCCCCCC
Q psy7711 261 MLQVLHNVFPRFADKTDDGSYMQQDANECWTEMVRMLKTALPGE-NEEGQDSAKSSFIEQYFYTIMDTELKCSESETEPP 339 (577)
Q Consensus 261 ~~~~l~~~~~~f~~~~~~~~~~QqDA~Efl~~ll~~L~~~~~~~-~~~~~~~~~~~~i~~lF~g~~~~~~~C~~c~~~~~ 339 (577)
|+..|+.+...|. .+.|+||||||++++|.++..+-.. ..........++|+++|||.++++++|..|.+ +
T Consensus 177 i~s~L~~I~~~f~------~grQEDAHEFLr~~vd~mqk~cL~g~~~~~~~sq~ttlv~~iFGG~LrS~vkC~~C~~--v 248 (545)
T KOG1865|consen 177 ILSNLRNISAHFG------RGRQEDAHEFLRFTVDAMQKACLPGHKQVDPRSQDTTLVHQIFGGYLRSQIKCLHCKG--V 248 (545)
T ss_pred HHHhhhhhccccc------CCchhhHHHHHHHHHHHHHHhhcCCCccCCcccccceehhhhhccchhhceecccCCC--c
Confidence 9999999999998 8899999999999999999987522 22344567889999999999999999999999 5
Q ss_pred CcccccceeeeeccCCCccchhHHHhhhhhhhhh-----ccCcCCCCCceEEEEEEeccCCCceEEEEEEEEEecccccc
Q psy7711 340 TKGTESFQQLSCYITTDVKYMLPGLKNKLQDQIT-----KRSPSLDRDAVYVKTSKVSRLPAYLTIQFVRFFYKEKERIN 414 (577)
Q Consensus 340 s~~~e~f~~L~l~i~~~~~~l~~~l~~~~~e~i~-----~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~ 414 (577)
+.++|++++|+++|. ++.+|.++|++|...+.. |+|++|...+.+.|+.+|.++|+||+||||||.. +..
T Consensus 249 S~tyE~~~dltvei~-d~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v~A~K~lti~raPnVLTi~LKRF~~----~~~ 323 (545)
T KOG1865|consen 249 SDTYEPYLDLTLEIQ-DASSLQQALEQFTKPEKLDGENAYHCGRCKQKVPASKQLTIHRAPNVLTLHLKRFSN----GTG 323 (545)
T ss_pred ccccccccceEEEec-cchhHHHHHHHhhhHHhhCCccccccchhhhhCcccceeeeecCCceEEEeeehhcc----Ccc
Confidence 899999999999998 899999999999885443 6899999999999999999999999999999997 458
Q ss_pred ccccccccCCccccccccCCHHHHhccccchHHHHHHHHHHHHHHHhhhhcccCCCchhhhhhhcccccCCccccccccc
Q psy7711 415 AKVLKDIKFPIEFDAYELCTPELQAKLAPMREKFKIAEEKEAFEEFRTQYVFISIPMDEIYVRFGQKIYAPVGDRIQDFG 494 (577)
Q Consensus 415 ~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 494 (577)
.||.++|.||+.|||.+|++..-
T Consensus 324 gKI~K~I~fPE~LDl~PyMS~~~--------------------------------------------------------- 346 (545)
T KOG1865|consen 324 GKISKPVSFPETLDLQPYMSQPN--------------------------------------------------------- 346 (545)
T ss_pred cccccccCCcccccccccccCCC---------------------------------------------------------
Confidence 99999999999999999865210
Q ss_pred cccchhcccCCCCCCCCCCCCCCCceeEEEeEEEEeecCCCCCCceEEEEECCCCcEEEEeCCcceecChhhhhcc
Q psy7711 495 VKSTEFQSRGQGSSPGRVDIGSNNSGYYTLQAVLTHKGRTSSSGHYVAWVKKPNGTWIKCDDDKVYPISEEEVLKL 570 (577)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~~GHY~a~vr~~~~~W~~~nD~~V~~v~~~~V~~~ 570 (577)
..+..|.|+|||+|.|.+..+|||+||||..+|.||++||+.|+.++.+.|+..
T Consensus 347 ----------------------e~s~~Y~LYavlVH~g~~~~~GHY~cYvks~~g~Wy~~DDS~V~~~~~~~VLsq 400 (545)
T KOG1865|consen 347 ----------------------EGSTVYKLYAVLVHLGTSCHSGHYFCYVKSQNGQWYKMDDSEVTQSSIESVLSQ 400 (545)
T ss_pred ----------------------CCCceEEEEEEEEeccccccCCceEEEEEcCCCceEEccCceeeeccccceecc
Confidence 023589999999999999999999999999999999999999999999999874
No 4
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.1e-55 Score=444.31 Aligned_cols=272 Identities=28% Similarity=0.454 Sum_probs=234.9
Q ss_pred ccCCCCCchhHHHHHHHhhccHHHHHHHHhhcCCCCCCCCChhhHHHHHHHHHHHHhcCCC-CCCCChHHHHHHHHhhCC
Q psy7711 192 GLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDNMKI-SPSISPFIMLQVLHNVFP 270 (577)
Q Consensus 192 GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~l~~~L~~Lf~~l~~~~~-~~~i~P~~~~~~l~~~~~ 270 (577)
||.|+||||||||+||+|++ .+++++|+.||..|+.+.. ...++|..|+++++...+
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~----------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~~~~ 58 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF----------------------ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKRENE 58 (300)
T ss_pred CccCCCcceehhHHHHHhhh----------------------HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHhhcC
Confidence 89999999999999999987 4688999999999998632 346899999999999999
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----------CCCCCccchhhhccceEEeEEEEcCCCCCCCCC
Q psy7711 271 RFADKTDDGSYMQQDANECWTEMVRMLKTALPGENEE----------GQDSAKSSFIEQYFYTIMDTELKCSESETEPPT 340 (577)
Q Consensus 271 ~f~~~~~~~~~~QqDA~Efl~~ll~~L~~~~~~~~~~----------~~~~~~~~~i~~lF~g~~~~~~~C~~c~~~~~s 340 (577)
.|. .++||||+|||..|||.|++++...... .......++|.++|+|++.++++|..|+.. +
T Consensus 59 ~f~------~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~G~~~~~~~C~~C~~~--s 130 (300)
T cd02663 59 LFD------NYMHQDAHEFLNFLLNEIAEILDAERKAEKANRKLNNNNNAEPQPTWVHEIFQGILTNETRCLTCETV--S 130 (300)
T ss_pred CCC------CCccccHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCcCCCChhhhCceEEEeeEEeCCCCCC--c
Confidence 998 8999999999999999999998644211 112345678999999999999999999984 6
Q ss_pred cccccceeeeeccCCCccchhHHHhhhhhhhhh-----ccCcCCCCCceEEEEEEeccCCCceEEEEEEEEEeccccccc
Q psy7711 341 KGTESFQQLSCYITTDVKYMLPGLKNKLQDQIT-----KRSPSLDRDAVYVKTSKVSRLPAYLTIQFVRFFYKEKERINA 415 (577)
Q Consensus 341 ~~~e~f~~L~l~i~~~~~~l~~~l~~~~~e~i~-----~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~ 415 (577)
.+.|+|+.|+|+|+. ..+|.++|+.|+.++.. ++|+.|+....+.|+..|.++|+||+|||+||.|+...+...
T Consensus 131 ~~~e~f~~Lsl~i~~-~~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~ 209 (300)
T cd02663 131 SRDETFLDLSIDVEQ-NTSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEQLNRYI 209 (300)
T ss_pred cccceeEEeccCCCC-cCCHHHHHHHhhcccccCCCCcEECCCCCCceeEEEEEEeccCCceeEEEEEeEEeecccCCce
Confidence 788999999999975 46799999999885543 579999999999999999999999999999999998766789
Q ss_pred cccccccCCccccccccCCHHHHhccccchHHHHHHHHHHHHHHHhhhhcccCCCchhhhhhhcccccCCcccccccccc
Q psy7711 416 KVLKDIKFPIEFDAYELCTPELQAKLAPMREKFKIAEEKEAFEEFRTQYVFISIPMDEIYVRFGQKIYAPVGDRIQDFGV 495 (577)
Q Consensus 416 Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 495 (577)
|+..+|.||.+|++..+...
T Consensus 210 Ki~~~v~fp~~L~~~~~~~~------------------------------------------------------------ 229 (300)
T cd02663 210 KLFYRVVFPLELRLFNTTDD------------------------------------------------------------ 229 (300)
T ss_pred ecCceEecCcEEeccccccc------------------------------------------------------------
Confidence 99999999999998654210
Q ss_pred ccchhcccCCCCCCCCCCCCCCCceeEEEeEEEEeecCCCCCCceEEEEECCCCcEEEEeCCcceecChhhhhccCCCC
Q psy7711 496 KSTEFQSRGQGSSPGRVDIGSNNSGYYTLQAVLTHKGRTSSSGHYVAWVKKPNGTWIKCDDDKVYPISEEEVLKLSGGG 574 (577)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~~GHY~a~vr~~~~~W~~~nD~~V~~v~~~~V~~~~~Gg 574 (577)
..+....|+|+|||+|.|.++++|||+||+|. +++||+|||+.|+++++++|.+..||+
T Consensus 230 -------------------~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~~k~-~~~W~~fdD~~V~~~~~~~v~~~~~~~ 288 (300)
T cd02663 230 -------------------AENPDRLYELVAVVVHIGGGPNHGHYVSIVKS-HGGWLLFDDETVEKIDENAVEEFFGDS 288 (300)
T ss_pred -------------------cCCCCeEEEEEEEEEEecCCCCCCceEEEEEC-CCcEEEEcCCceEEcCHHHHHHhcCCC
Confidence 01123589999999999987999999999999 999999999999999999999887664
No 5
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1e-54 Score=442.19 Aligned_cols=284 Identities=23% Similarity=0.348 Sum_probs=241.7
Q ss_pred ccCCCCCchhHHHHHHHhhccHHHHHHHHhhcCCCCC--------CCCChhhHHHHHHHHHHHHhcCCCCCCCChHHHHH
Q psy7711 192 GLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQP--------GSNPAQSITASLRDLYECMDNMKISPSISPFIMLQ 263 (577)
Q Consensus 192 GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~~~~~--------~~~~~~~l~~~L~~Lf~~l~~~~~~~~i~P~~~~~ 263 (577)
||.|+||||||||+||+|+++|+||+++++....... ......+++++|+.||..|+.+. ...++|..|+.
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~-~~~i~p~~f~~ 79 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGN-RSVVDPSGFVK 79 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCC-CceEChHHHHH
Confidence 8999999999999999999999999999876532210 00123579999999999999875 56899999998
Q ss_pred HHHhhCCccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCCCccchhhhccceEEeEEEEcCCCCCCCCCccc
Q psy7711 264 VLHNVFPRFADKTDDGSYMQQDANECWTEMVRMLKTALPGENEEGQDSAKSSFIEQYFYTIMDTELKCSESETEPPTKGT 343 (577)
Q Consensus 264 ~l~~~~~~f~~~~~~~~~~QqDA~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~i~~lF~g~~~~~~~C~~c~~~~~s~~~ 343 (577)
++. |. .++||||+|||..||+.|++++..... ....+++.++|+|++..+++|..|+.. +.+.
T Consensus 80 ~l~-----~~------~~~QqDa~EFl~~lLd~L~~~l~~~~~----~~~~~~i~~~F~G~~~~~~~C~~C~~~--s~~~ 142 (324)
T cd02668 80 ALG-----LD------TGQQQDAQEFSKLFLSLLEAKLSKSKN----PDLKNIVQDLFRGEYSYVTQCSKCGRE--SSLP 142 (324)
T ss_pred HhC-----CC------CccccCHHHHHHHHHHHHHHHHhhccC----CcccchhhhhcceEEEEEEEeCCCCCc--cccc
Confidence 873 43 679999999999999999998864311 223578999999999999999999985 5778
Q ss_pred ccceeeeeccCCCccchhHHHhhhhhhhh-----hccCcCCCCCceEEEEEEeccCCCceEEEEEEEEEecccccccccc
Q psy7711 344 ESFQQLSCYITTDVKYMLPGLKNKLQDQI-----TKRSPSLDRDAVYVKTSKVSRLPAYLTIQFVRFFYKEKERINAKVL 418 (577)
Q Consensus 344 e~f~~L~l~i~~~~~~l~~~l~~~~~e~i-----~~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~ 418 (577)
|+|+.|+++|+. ..+|+++|+.++..+. .+.|+.|+....+.|+..|.++|++|+|||+||.|+...+...|++
T Consensus 143 e~f~~l~l~i~~-~~sl~~~L~~~~~~e~l~g~~~~~C~~C~~~~~a~k~~~i~~lP~iLii~LkRf~~d~~~~~~~Ki~ 221 (324)
T cd02668 143 SKFYELELQLKG-HKTLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLN 221 (324)
T ss_pred cccEEEEEEecc-cCCHHHHHHHhhCceecCCCccccCCCCCceeeeEEEEEecCCCCeEEEEEEcceeecccCcceeCC
Confidence 999999999964 4689999999998543 2579999999999999999999999999999999998878899999
Q ss_pred ccccCCccccccccCCHHHHhccccchHHHHHHHHHHHHHHHhhhhcccCCCchhhhhhhcccccCCccccccccccccc
Q psy7711 419 KDIKFPIEFDAYELCTPELQAKLAPMREKFKIAEEKEAFEEFRTQYVFISIPMDEIYVRFGQKIYAPVGDRIQDFGVKST 498 (577)
Q Consensus 419 ~~V~fp~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 498 (577)
.+|.||..|||.+|+.++.
T Consensus 222 ~~v~fp~~Ldl~~~~~~~~------------------------------------------------------------- 240 (324)
T cd02668 222 ASISFPEILDMGEYLAESD------------------------------------------------------------- 240 (324)
T ss_pred cEEECCCeEechhhccccc-------------------------------------------------------------
Confidence 9999999999988863210
Q ss_pred hhcccCCCCCCCCCCCCCCCceeEEEeEEEEeecCCCCCCceEEEEECC-CCcEEEEeCCcceecChhhhhccCCC
Q psy7711 499 EFQSRGQGSSPGRVDIGSNNSGYYTLQAVLTHKGRTSSSGHYVAWVKKP-NGTWIKCDDDKVYPISEEEVLKLSGG 573 (577)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~~GHY~a~vr~~-~~~W~~~nD~~V~~v~~~~V~~~~~G 573 (577)
.....|+|+|||+|.|.++++|||+||+|+. +++||+|||+.|++++++.|....++
T Consensus 241 ------------------~~~~~Y~L~~vI~H~G~~~~~GHY~~~~k~~~~~~W~~fdD~~V~~i~~~~~~~~~~~ 298 (324)
T cd02668 241 ------------------EGSYVYELSGVLIHQGVSAYSGHYIAHIKDEQTGEWYKFNDEDVEEMPGKPLKLGNSE 298 (324)
T ss_pred ------------------CCCcEEEEEEEEEEcCCCCCCEeeEEEEECCCCCcEEEEECCceEEcCHHHhhccccc
Confidence 1134799999999999889999999999986 58999999999999999999886663
No 6
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=9.7e-55 Score=441.91 Aligned_cols=290 Identities=24% Similarity=0.330 Sum_probs=233.4
Q ss_pred ccCCCCCchhHHHHHHHhhccHHHHHHHHhhcCCCCCCCCChhhHHHHHHHHHHHHhcCCCCCCCChHH-HHHHHHhhCC
Q psy7711 192 GLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDNMKISPSISPFI-MLQVLHNVFP 270 (577)
Q Consensus 192 GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~l~~~L~~Lf~~l~~~~~~~~i~P~~-~~~~l~~~~~ 270 (577)
||.|+||||||||+||+|+++|+||+.+++...+.. .....+..+|+.+|..|..+. ...+.|.. |+..+. .+
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~~---~~~~~~~~~L~~lf~~l~~~~-~~~~~~~~~~l~~~~--~~ 74 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRL---GDSQSVMKKLQLLQAHLMHTQ-RRAEAPPDYFLEASR--PP 74 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCcccc---CCcchHHHHHHHHHHHHhhcC-CcccCCHHHHHHHhc--cc
Confidence 899999999999999999999999999998765321 223467889999999988754 44666765 665543 35
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCCCccchhhhccceEEeEEEEcCCCCCCCCCcccccceeee
Q psy7711 271 RFADKTDDGSYMQQDANECWTEMVRMLKTALPGENEEGQDSAKSSFIEQYFYTIMDTELKCSESETEPPTKGTESFQQLS 350 (577)
Q Consensus 271 ~f~~~~~~~~~~QqDA~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~i~~lF~g~~~~~~~C~~c~~~~~s~~~e~f~~L~ 350 (577)
.|. .+.||||+||+..||+.|+ ++|.++|+|++.++++|..|+.. +.+.|.|..|+
T Consensus 75 ~f~------~~~QqDa~EFl~~lLd~l~----------------~~i~~~F~G~~~~~i~C~~C~~~--s~~~e~f~~l~ 130 (327)
T cd02664 75 WFT------PGSQQDCSEYLRYLLDRLH----------------TLIEKMFGGKLSTTIRCLNCNST--SARTERFRDLD 130 (327)
T ss_pred ccC------CCCcCCHHHHHHHHHHHHH----------------HHHHhhCcEEeEeEEEcCCCCCE--ecccccceeee
Confidence 676 7899999999999999998 25899999999999999999985 67889999999
Q ss_pred eccCCCccchhHHHhhhhhhhh-----hccCcCCCCCceEEEEEEeccCCCceEEEEEEEEEeccccccccccccccCCc
Q psy7711 351 CYITTDVKYMLPGLKNKLQDQI-----TKRSPSLDRDAVYVKTSKVSRLPAYLTIQFVRFFYKEKERINAKVLKDIKFPI 425 (577)
Q Consensus 351 l~i~~~~~~l~~~l~~~~~e~i-----~~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~V~fp~ 425 (577)
|+|+ ++.++|+.++..+. .++|+.|++...+.|+..|.++|+||+|||+||.|+..++...||..+|.||.
T Consensus 131 L~i~----sl~~~l~~~~~~E~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~ 206 (327)
T cd02664 131 LSFP----SVQDLLNYFLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSINE 206 (327)
T ss_pred cCCC----CHHHHHHHhcCeeEccCCCceeCCccCCccceeEEEEcccCChhhEEEeeeeEEccccCcceecCceEecCC
Confidence 9986 68999999887443 26899999999999999999999999999999999998888899999999999
Q ss_pred cccccccCCHHHHhccccchHHHHHHHHHHHHHHHhhhhcccCCCchhhhhhhcccccCCccccccccccccchhcccCC
Q psy7711 426 EFDAYELCTPELQAKLAPMREKFKIAEEKEAFEEFRTQYVFISIPMDEIYVRFGQKIYAPVGDRIQDFGVKSTEFQSRGQ 505 (577)
Q Consensus 426 ~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 505 (577)
.|||..++....... + .. . ..+
T Consensus 207 ~ldl~~~~~~~~~~~--~----------------------------------------~~--~-----------~~~--- 228 (327)
T cd02664 207 VLSLPVRVESKSSES--P----------------------------------------LE--K-----------KEE--- 228 (327)
T ss_pred EEecCcccccccccc--c----------------------------------------cc--c-----------ccc---
Confidence 999987753211000 0 00 0 000
Q ss_pred CCCCCCCCCCCCCceeEEEeEEEEeecCCCCCCceEEEEECCC---------------------CcEEEEeCCcceecCh
Q psy7711 506 GSSPGRVDIGSNNSGYYTLQAVLTHKGRTSSSGHYVAWVKKPN---------------------GTWIKCDDDKVYPISE 564 (577)
Q Consensus 506 ~~~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~~GHY~a~vr~~~---------------------~~W~~~nD~~V~~v~~ 564 (577)
.....+........|+|+|||+|.|.++++|||+||+|... +.||+|||+.|+.+++
T Consensus 229 --~~~~~~~~~~~~~~Y~L~~Vi~H~G~~~~~GHY~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~~~~ 306 (327)
T cd02664 229 --ESGDDGELVTRQVHYRLYAVVVHSGYSSESGHYFTYARDQTDADSTGQECPEPKDAEENDESKNWYLFNDSRVTFSSF 306 (327)
T ss_pred --cccccccccCCCceEEEEEEEEEccCCCCCcceEEEEecCCccccccccccccccccccCCCCCEEEEeCCceEECCH
Confidence 00001111234568999999999998899999999999854 7999999999999999
Q ss_pred hhhhccCCCCC
Q psy7711 565 EEVLKLSGGGK 575 (577)
Q Consensus 565 ~~V~~~~~Gg~ 575 (577)
++|++..+||.
T Consensus 307 ~~v~~~~~~~~ 317 (327)
T cd02664 307 ESVQNVTSRFP 317 (327)
T ss_pred HHHHHhhCCCC
Confidence 99998766654
No 7
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.1e-53 Score=436.67 Aligned_cols=299 Identities=24% Similarity=0.384 Sum_probs=247.9
Q ss_pred cccCCCCCchhHHHHHHHhhccHHHHHHHHhhcCCC-CCCCCChhhHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHhhC
Q psy7711 191 AGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGL-QPGSNPAQSITASLRDLYECMDNMKISPSISPFIMLQVLHNVF 269 (577)
Q Consensus 191 ~GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~~~-~~~~~~~~~l~~~L~~Lf~~l~~~~~~~~i~P~~~~~~l~~~~ 269 (577)
+||.|+||||||||+||+|+++|+||+++++..... ........++.++|++||..|+.......+.|..|+.++....
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~~~ 80 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEFYYSGDRSPYGPINLLYLSWKHS 80 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCccccccccCCccccHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhc
Confidence 699999999999999999999999999998764332 0123455689999999999995543356889999999999888
Q ss_pred CccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-CCCCccchhhhccceEEeEEEEcCCCCCCCCCccccccee
Q psy7711 270 PRFADKTDDGSYMQQDANECWTEMVRMLKTALPGENEEG-QDSAKSSFIEQYFYTIMDTELKCSESETEPPTKGTESFQQ 348 (577)
Q Consensus 270 ~~f~~~~~~~~~~QqDA~Efl~~ll~~L~~~~~~~~~~~-~~~~~~~~i~~lF~g~~~~~~~C~~c~~~~~s~~~e~f~~ 348 (577)
+.|. ++.||||+||+..||+.|++++....... ......++|.++|+|.+.++++|..|++. +.+.|+|+.
T Consensus 81 ~~f~------~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~--s~~~e~f~~ 152 (328)
T cd02660 81 RNLA------GYSQQDAHEFFQFLLDQLHTHYGGDKNEANDESHCNCIIHQTFSGSLQSSVTCQRCGGV--STTVDPFLD 152 (328)
T ss_pred hhhc------ccccccHHHHHHHHHHHHHHHhhcccccccccccCCceeEEecccEEEeeeEcCCCCCc--cceecccce
Confidence 8887 88999999999999999999986653211 11233578999999999999999999985 566899999
Q ss_pred eeeccCCCc--------------cchhHHHhhhhhhhhh----ccCcCCCCCceEEEEEEeccCCCceEEEEEEEEEecc
Q psy7711 349 LSCYITTDV--------------KYMLPGLKNKLQDQIT----KRSPSLDRDAVYVKTSKVSRLPAYLTIQFVRFFYKEK 410 (577)
Q Consensus 349 L~l~i~~~~--------------~~l~~~l~~~~~e~i~----~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~ 410 (577)
|+++|+... .+|.++|+.++.++.. +.|+.|+....+.++..|.++|++|+|||+||.|+..
T Consensus 153 lsl~i~~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~~~~~~~~C~~C~~~~~~~~~~~i~~lP~~Lii~lkRf~~~~~ 232 (328)
T cd02660 153 LSLDIPNKSTPSWALGESGVSGTPTLSDCLDRFTRPEKLGDFAYKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHSLN 232 (328)
T ss_pred eeeeccccccccccccccCCCCCCCHHHHHHHhcCccccCCCCccCCCCCCccceEEEEEecCCCceeEEEEEeEEecCC
Confidence 999997542 6899999999985433 3699999999999999999999999999999999975
Q ss_pred ccccccccccccCCccccccccCCHHHHhccccchHHHHHHHHHHHHHHHhhhhcccCCCchhhhhhhcccccCCccccc
Q psy7711 411 ERINAKVLKDIKFPIEFDAYELCTPELQAKLAPMREKFKIAEEKEAFEEFRTQYVFISIPMDEIYVRFGQKIYAPVGDRI 490 (577)
Q Consensus 411 ~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 490 (577)
+...|+...|.||.+|||.+|+..+..+.
T Consensus 233 -~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~-------------------------------------------------- 261 (328)
T cd02660 233 -KTSRKIDTYVQFPLELNMTPYTSSSIGDT-------------------------------------------------- 261 (328)
T ss_pred -CCCcCCCcEEeCCCEechhhhcccccccc--------------------------------------------------
Confidence 66789999999999999999887542000
Q ss_pred cccccccchhcccCCCCCCCCCCCCCCCceeEEEeEEEEeecCCCCCCceEEEEECCCCcEEEEeCCcceecChhhhhc
Q psy7711 491 QDFGVKSTEFQSRGQGSSPGRVDIGSNNSGYYTLQAVLTHKGRTSSSGHYVAWVKKPNGTWIKCDDDKVYPISEEEVLK 569 (577)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~~GHY~a~vr~~~~~W~~~nD~~V~~v~~~~V~~ 569 (577)
..+........|+|+|||+|.|. .++|||+||+|..+++||+|||+.|+++++++|+.
T Consensus 262 --------------------~~~~~~~~~~~Y~L~avi~H~G~-~~~GHY~~~~~~~~~~W~~~nD~~V~~~~~~~v~~ 319 (328)
T cd02660 262 --------------------QDSNSLDPDYTYDLFAVVVHKGT-LDTGHYTAYCRQGDGQWFKFDDAMITRVSEEEVLK 319 (328)
T ss_pred --------------------cccccCCCCceEEEEEEEEeecc-CCCCcEEEEEECCCCcEEEEECCeeEECCHHHhcC
Confidence 00001123458999999999995 79999999999977999999999999999999976
No 8
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.2e-53 Score=431.22 Aligned_cols=274 Identities=27% Similarity=0.361 Sum_probs=225.1
Q ss_pred hhcccccccccCCCCCchhHHHHHHHhhccHHHHHHHHhhcCCCCCCCCChhhHHHHHHHHHHHHhcCCCCCCCChHHHH
Q psy7711 183 MLQGRYLPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDNMKISPSISPFIML 262 (577)
Q Consensus 183 ~~~~~~~~~GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~l~~~L~~Lf~~l~~~~~~~~i~P~~~~ 262 (577)
..+...+.+||.|+||||||||+||+|+++|.||+.+.+...... .....+.+...|+.+|... .....|..|+
T Consensus 17 ~~~~~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~-~~~~~q~~~~~l~~~~~~~-----~~~~~P~~~~ 90 (332)
T cd02671 17 KRENLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLIS-SVEQLQSSFLLNPEKYNDE-----LANQAPRRLL 90 (332)
T ss_pred ccccCCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhhcccC-cHHHHHHHHHHHHHHHhhc-----ccccCHHHHH
Confidence 344567789999999999999999999999999999977652111 0011122233334444332 2345799999
Q ss_pred HHHHhhCCccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCCCccchhhhccceEEeEEEEcCCCCCCCCCcc
Q psy7711 263 QVLHNVFPRFADKTDDGSYMQQDANECWTEMVRMLKTALPGENEEGQDSAKSSFIEQYFYTIMDTELKCSESETEPPTKG 342 (577)
Q Consensus 263 ~~l~~~~~~f~~~~~~~~~~QqDA~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~i~~lF~g~~~~~~~C~~c~~~~~s~~ 342 (577)
++++...|.|. .+.||||+|||..||+.|+. ++.++|+|.+.++++|..|+.. +.+
T Consensus 91 ~~l~~~~~~f~------~~~QQDA~EFl~~LLd~L~~----------------~i~~~F~g~~~~~~~C~~C~~~--s~~ 146 (332)
T cd02671 91 NALREVNPMYE------GYLQHDAQEVLQCILGNIQE----------------LVEKDFQGQLVLRTRCLECETF--TER 146 (332)
T ss_pred HHHHHhccccC------CccccCHHHHHHHHHHHHHH----------------HHHhhhceEEEEEEEeCCCCCe--ece
Confidence 99999999998 89999999999999999984 4789999999999999999984 788
Q ss_pred cccceeeeeccCCCc------------------cchhHHHhhhhhhhhh-----ccCcCCCCCceEEEEEEeccCCCceE
Q psy7711 343 TESFQQLSCYITTDV------------------KYMLPGLKNKLQDQIT-----KRSPSLDRDAVYVKTSKVSRLPAYLT 399 (577)
Q Consensus 343 ~e~f~~L~l~i~~~~------------------~~l~~~l~~~~~e~i~-----~~c~~c~~~~~~~k~~~i~~lP~~L~ 399 (577)
.|+|++|+|+|+... .+|.++|+.|++++.. ++|+.|+....+.|+..|.++|++|+
T Consensus 147 ~E~f~~lsL~i~~~~~~~~~~~~~~~~~~~~~~~tL~~~L~~f~~~E~l~g~n~y~C~~C~~~~~a~k~~~~~~~P~vL~ 226 (332)
T cd02671 147 REDFQDISVPVQESELSKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKLPEVIT 226 (332)
T ss_pred ecccEEEEEEeCCCcccccccccccccccccccCCHHHHHHHhCCcceecCCCCeeCCCCCCceeEEEEEEEecCCCEEE
Confidence 999999999997542 5799999999985543 68999999999999999999999999
Q ss_pred EEEEEEEEeccc----cccccccccccCCccccccccCCHHHHhccccchHHHHHHHHHHHHHHHhhhhcccCCCchhhh
Q psy7711 400 IQFVRFFYKEKE----RINAKVLKDIKFPIEFDAYELCTPELQAKLAPMREKFKIAEEKEAFEEFRTQYVFISIPMDEIY 475 (577)
Q Consensus 400 i~l~Rf~~~~~~----~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (577)
|||+||.++... +...|++.+|.||..||+.+++..
T Consensus 227 i~LkRF~~~~~~~~~~~~~~Ki~~~v~fp~~L~~~~~~~~---------------------------------------- 266 (332)
T cd02671 227 IHLKCFAANGSEFDCYGGLSKVNTPLLTPLKLSLEEWSTK---------------------------------------- 266 (332)
T ss_pred EEeeeeccccccccccCCceecCccccCccccccccccCC----------------------------------------
Confidence 999999987531 347899999999999998655321
Q ss_pred hhhcccccCCccccccccccccchhcccCCCCCCCCCCCCCCCceeEEEeEEEEeecCCCCCCceEEEEECCCCcEEEEe
Q psy7711 476 VRFGQKIYAPVGDRIQDFGVKSTEFQSRGQGSSPGRVDIGSNNSGYYTLQAVLTHKGRTSSSGHYVAWVKKPNGTWIKCD 555 (577)
Q Consensus 476 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~~GHY~a~vr~~~~~W~~~n 555 (577)
.....|+|+|||+|.|.++++|||+||+| ||+||
T Consensus 267 -----------------------------------------~~~~~Y~L~~VI~H~G~~~~~GHY~a~vr-----W~~fd 300 (332)
T cd02671 267 -----------------------------------------PKNDVYRLFAVVMHSGATISSGHYTAYVR-----WLLFD 300 (332)
T ss_pred -----------------------------------------CCCCeEEEEEEEEEcCCCCCCCeEEEEEE-----EEEEc
Confidence 01347999999999998789999999999 99999
Q ss_pred CCcceecChhhhhccCC
Q psy7711 556 DDKVYPISEEEVLKLSG 572 (577)
Q Consensus 556 D~~V~~v~~~~V~~~~~ 572 (577)
|+.|+.++++++++...
T Consensus 301 D~~V~~~~~~~~~~~~~ 317 (332)
T cd02671 301 DSEVKVTEEKDFLEALS 317 (332)
T ss_pred CcceEEccHHHHHhhcC
Confidence 99999999999987643
No 9
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.6e-52 Score=422.10 Aligned_cols=271 Identities=27% Similarity=0.420 Sum_probs=231.5
Q ss_pred ccCCCCCchhHHHHHHHhhccHHHHHHHHhhcCCCC-CCCCChhhHHHHHHHHHHHHhcCCC-------------CCCCC
Q psy7711 192 GLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQ-PGSNPAQSITASLRDLYECMDNMKI-------------SPSIS 257 (577)
Q Consensus 192 GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~~~~-~~~~~~~~l~~~L~~Lf~~l~~~~~-------------~~~i~ 257 (577)
||.|+||||||||+||||+++|+||+++++...... ....+..++.++|++||..|+.++. ..+++
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~i~ 80 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVGIK 80 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccCCCcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccccC
Confidence 899999999999999999999999999976432211 1234566899999999999987532 24689
Q ss_pred hHHHHHHHHhhCCccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCCCccchhhhccceEEeEEEEcCCCCCC
Q psy7711 258 PFIMLQVLHNVFPRFADKTDDGSYMQQDANECWTEMVRMLKTALPGENEEGQDSAKSSFIEQYFYTIMDTELKCSESETE 337 (577)
Q Consensus 258 P~~~~~~l~~~~~~f~~~~~~~~~~QqDA~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~i~~lF~g~~~~~~~C~~c~~~ 337 (577)
|..|+.+++...|.|. .+.||||+||+..||+.|++++... ....+.++|+|.+.++++|..|+.
T Consensus 81 p~~~~~~l~~~~~~f~------~~~QqDa~Efl~~ll~~l~~~~~~~--------~~~~~~~~f~~~~~~~i~C~~C~~- 145 (311)
T cd02658 81 PSMFKALIGKGHPEFS------TMRQQDALEFLLHLIDKLDRESFKN--------LGLNPNDLFKFMIEDRLECLSCKK- 145 (311)
T ss_pred cHHHHHHHhccChhhc------ccccccHHHHHHHHHHHHHHhhccc--------ccCCchhheEEEeeEEEEcCCCCC-
Confidence 9999999999999998 8899999999999999999987532 134578999999999999999986
Q ss_pred CCCcccccceeeeeccCCCc-------------cchhHHHhhhhh-hhhhccCcCCCCCceEEEEEEeccCCCceEEEEE
Q psy7711 338 PPTKGTESFQQLSCYITTDV-------------KYMLPGLKNKLQ-DQITKRSPSLDRDAVYVKTSKVSRLPAYLTIQFV 403 (577)
Q Consensus 338 ~~s~~~e~f~~L~l~i~~~~-------------~~l~~~l~~~~~-e~i~~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~ 403 (577)
++.+.|+|..|+|+++... .+|+++|+.++. +.+.++|+.|++...+.|+.+|.+||+||+|||+
T Consensus 146 -~s~~~e~~~~lsL~l~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~i~~~C~~C~~~~~a~k~~~i~~lP~vLii~Lk 224 (311)
T cd02658 146 -VKYTSELSEILSLPVPKDEATEKEEGELVYEPVPLEDCLKAYFAPETIEDFCSTCKEKTTATKTTGFKTFPDYLVINMK 224 (311)
T ss_pred -EEEeecceeEEeeecccccccccccccccCCCCCHHHHHHHHcCcccccccccCCCCcccEEEEEEeecCCceEEEEeE
Confidence 4677899999999887532 379999999988 5677899999999999999999999999999999
Q ss_pred EEEEeccccccccccccccCCccccccccCCHHHHhccccchHHHHHHHHHHHHHHHhhhhcccCCCchhhhhhhccccc
Q psy7711 404 RFFYKEKERINAKVLKDIKFPIEFDAYELCTPELQAKLAPMREKFKIAEEKEAFEEFRTQYVFISIPMDEIYVRFGQKIY 483 (577)
Q Consensus 404 Rf~~~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (577)
||.|+. .+...|+...|.||..|.
T Consensus 225 RF~~~~-~~~~~Ki~~~v~~p~~l~------------------------------------------------------- 248 (311)
T cd02658 225 RFQLLE-NWVPKKLDVPIDVPEELG------------------------------------------------------- 248 (311)
T ss_pred EEEecC-CCceEeeccccccCCcCC-------------------------------------------------------
Confidence 999974 355789999999997751
Q ss_pred CCccccccccccccchhcccCCCCCCCCCCCCCCCceeEEEeEEEEeecCCCCCCceEEEEECC---CCcEEEEeCCcce
Q psy7711 484 APVGDRIQDFGVKSTEFQSRGQGSSPGRVDIGSNNSGYYTLQAVLTHKGRTSSSGHYVAWVKKP---NGTWIKCDDDKVY 560 (577)
Q Consensus 484 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~~GHY~a~vr~~---~~~W~~~nD~~V~ 560 (577)
...|+|+|||+|.|.++++|||++|+|.. +++||+|||+.|+
T Consensus 249 -----------------------------------~~~Y~L~~vI~H~G~~~~~GHY~~~vk~~~~~~~~W~~fnD~~V~ 293 (311)
T cd02658 249 -----------------------------------PGKYELIAFISHKGTSVHSGHYVAHIKKEIDGEGKWVLFNDEKVV 293 (311)
T ss_pred -----------------------------------CCcEEEEEEEEccCCCCCCcceEEEEeCCCCCCCCEEEecCceeE
Confidence 12699999999999889999999999985 3899999999999
Q ss_pred ecChhhhhc
Q psy7711 561 PISEEEVLK 569 (577)
Q Consensus 561 ~v~~~~V~~ 569 (577)
+++..+|+.
T Consensus 294 ~~~~~~~~~ 302 (311)
T cd02658 294 ASQDPPEMK 302 (311)
T ss_pred ECCcccccC
Confidence 999998854
No 10
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=9.2e-52 Score=418.55 Aligned_cols=287 Identities=28% Similarity=0.405 Sum_probs=243.2
Q ss_pred ccccCCCCCchhHHHHHHHhhccHHHHHHHHhhcCCCCCCCCChhhHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHhhC
Q psy7711 190 PAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDNMKISPSISPFIMLQVLHNVF 269 (577)
Q Consensus 190 ~~GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~l~~~L~~Lf~~l~~~~~~~~i~P~~~~~~l~~~~ 269 (577)
|+||.|+||||||||+||+|+++|+|++++++...... ......++.++|+.++..+..++ ...+.|..|..++....
T Consensus 1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~-~~~~~p~~~~~~l~~~~ 78 (304)
T cd02661 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKD-CCNEGFCMMCALEAHVERALASS-GPGSAPRIFSSNLKQIS 78 (304)
T ss_pred CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhh-ccCCcchHHHHHHHHHHHHHhCC-CCccChHHHHHHHHHHH
Confidence 68999999999999999999999999999986443221 12344589999999999988765 56889999999999988
Q ss_pred CccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----CCCCCccchhhhccceEEeEEEEcCCCCCCCCCccccc
Q psy7711 270 PRFADKTDDGSYMQQDANECWTEMVRMLKTALPGENEE----GQDSAKSSFIEQYFYTIMDTELKCSESETEPPTKGTES 345 (577)
Q Consensus 270 ~~f~~~~~~~~~~QqDA~Efl~~ll~~L~~~~~~~~~~----~~~~~~~~~i~~lF~g~~~~~~~C~~c~~~~~s~~~e~ 345 (577)
+.|. .+.||||+|||..||+.|++++...... .......+++.++|+|++.++++|..|+.. +.+.|.
T Consensus 79 ~~f~------~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~--s~~~e~ 150 (304)
T cd02661 79 KHFR------IGRQEDAHEFLRYLLDAMQKACLDRFKKLKAVDPSSQETTLVQQIFGGYLRSQVKCLNCKHV--SNTYDP 150 (304)
T ss_pred Hhhc------CcchhhHHHHHHHHHHHHHHHHhhhcccccccCccccCCChhhhcCCcEEeeeEEeCCCCCC--cCcccc
Confidence 8887 7899999999999999999886443211 122344678999999999999999999985 667899
Q ss_pred ceeeeeccCCCccchhHHHhhhhhhhh-h----ccCcCCCCCceEEEEEEeccCCCceEEEEEEEEEecccccccccccc
Q psy7711 346 FQQLSCYITTDVKYMLPGLKNKLQDQI-T----KRSPSLDRDAVYVKTSKVSRLPAYLTIQFVRFFYKEKERINAKVLKD 420 (577)
Q Consensus 346 f~~L~l~i~~~~~~l~~~l~~~~~e~i-~----~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~ 420 (577)
|+.|+++|+.. .++.++|+.++..+. . +.|+.|++...+.++..|.++|++|+|||+||.++ ...|+...
T Consensus 151 ~~~l~l~i~~~-~~l~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~iL~i~l~Rf~~~----~~~Ki~~~ 225 (304)
T cd02661 151 FLDLSLDIKGA-DSLEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNF----RGGKINKQ 225 (304)
T ss_pred ceeeeeecCCC-CcHHHHHHHhcCceeeCCCCCeeCCCCCCccceEEEEEEecCCcEEEEEEeccccC----CccccCCe
Confidence 99999999754 689999999988543 2 47999999999999999999999999999999988 36799999
Q ss_pred ccCCccccccccCCHHHHhccccchHHHHHHHHHHHHHHHhhhhcccCCCchhhhhhhcccccCCccccccccccccchh
Q psy7711 421 IKFPIEFDAYELCTPELQAKLAPMREKFKIAEEKEAFEEFRTQYVFISIPMDEIYVRFGQKIYAPVGDRIQDFGVKSTEF 500 (577)
Q Consensus 421 V~fp~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 500 (577)
|.||.+|||.+|+..+
T Consensus 226 v~f~~~L~l~~~~~~~---------------------------------------------------------------- 241 (304)
T cd02661 226 ISFPETLDLSPYMSQP---------------------------------------------------------------- 241 (304)
T ss_pred EecCCeechhhccccC----------------------------------------------------------------
Confidence 9999999998775421
Q ss_pred cccCCCCCCCCCCCCCCCceeEEEeEEEEeecCCCCCCceEEEEECCCCcEEEEeCCcceecChhhhhcc
Q psy7711 501 QSRGQGSSPGRVDIGSNNSGYYTLQAVLTHKGRTSSSGHYVAWVKKPNGTWIKCDDDKVYPISEEEVLKL 570 (577)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~~GHY~a~vr~~~~~W~~~nD~~V~~v~~~~V~~~ 570 (577)
......|+|+|||+|.|.++++|||+||+|..+++||+|||+.|+++++++|+..
T Consensus 242 ---------------~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~ 296 (304)
T cd02661 242 ---------------NDGPLKYKLYAVLVHSGFSPHSGHYYCYVKSSNGKWYNMDDSKVSPVSIETVLSQ 296 (304)
T ss_pred ---------------CCCCceeeEEEEEEECCCCCCCcCCEEEEECCCCCEEEEeCCeeEECCHHHhcCC
Confidence 0113479999999999987799999999999889999999999999999999764
No 11
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.2e-51 Score=431.36 Aligned_cols=292 Identities=21% Similarity=0.259 Sum_probs=230.8
Q ss_pred ccccccCCCCCchhHHHHHHHhhccHHHHHHHHhhcCCCCCCCCChhhHHHHHHHHHHHHhcCCC-CCCCChHHHHHHHH
Q psy7711 188 YLPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDNMKI-SPSISPFIMLQVLH 266 (577)
Q Consensus 188 ~~~~GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~l~~~L~~Lf~~l~~~~~-~~~i~P~~~~~~l~ 266 (577)
.|.+||.|+|||||||||||+|+++|+||++++........ .....++.++|..++..+++.+. ...++|..|++++.
T Consensus 117 ~G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~-~~~~~~l~~~l~~l~~kl~~~~~~~~~isP~~fl~~l~ 195 (440)
T cd02669 117 PGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENI-KDRKSELVKRLSELIRKIWNPRNFKGHVSPHELLQAVS 195 (440)
T ss_pred CCccCccCCCCchHHHHHHHHHHCCHHHHHHHhhccccccc-cCCCcHHHHHHHHHHHHHhccccCCCccCHHHHHHHHH
Confidence 46799999999999999999999999999999876543211 12345799999999999997632 46899999999998
Q ss_pred hhC-CccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCCCccchhhhccceEEeEEEEcCCCCCC--------
Q psy7711 267 NVF-PRFADKTDDGSYMQQDANECWTEMVRMLKTALPGENEEGQDSAKSSFIEQYFYTIMDTELKCSESETE-------- 337 (577)
Q Consensus 267 ~~~-~~f~~~~~~~~~~QqDA~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~i~~lF~g~~~~~~~C~~c~~~-------- 337 (577)
... +.|. +++||||+|||.+||+.|++++.... ....++|.++|+|++.+.++|..|..+
T Consensus 196 ~~~~~~f~------~~~QqDA~EFl~~LLd~L~~~l~~~~-----~~~~~ii~~~F~G~l~~~~~c~~~~~~~~~~~~~~ 264 (440)
T cd02669 196 KVSKKKFS------ITEQSDPVEFLSWLLNTLHKDLGGSK-----KPNSSIIHDCFQGKVQIETQKIKPHAEEEGSKDKF 264 (440)
T ss_pred hhcccccC------CcccCCHHHHHHHHHHHHHHHhccCC-----CCCCCcceeccCceEEEEEEeeccccccccccccc
Confidence 765 4576 88999999999999999999987532 235678999999999999998766421
Q ss_pred -----CCCcccccceeeeeccCCCccc----hhHHHhhh-hhhhhh-ccCcCCCCCceEEEEEEeccCCCceEEEEEEEE
Q psy7711 338 -----PPTKGTESFQQLSCYITTDVKY----MLPGLKNK-LQDQIT-KRSPSLDRDAVYVKTSKVSRLPAYLTIQFVRFF 406 (577)
Q Consensus 338 -----~~s~~~e~f~~L~l~i~~~~~~----l~~~l~~~-~~e~i~-~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~ 406 (577)
..+.+.++|+.|+|+|+..... ...++.+. +.+-+. +.|+.|.....+.|+.+|.+||+||+|||+||.
T Consensus 265 ~~c~~~~s~~~~pF~~LsLdip~~~~~~~~~~~~~l~~~~l~e~L~ky~~~~c~~~~~a~k~~~I~~LP~vLiihLKRF~ 344 (440)
T cd02669 265 FKDSRVKKTSVSPFLLLTLDLPPPPLFKDGNEENIIPQVPLKQLLKKYDGKTETELKDSLKRYLISRLPKYLIFHIKRFS 344 (440)
T ss_pred ccccccceeeeccceEEEecCCCCccccccccccccCcccHHHHHHhcCCccceecccceEEEEEeeCCcEEEEEEeccc
Confidence 1356789999999999754210 11112111 112222 357788888888999999999999999999999
Q ss_pred EeccccccccccccccCCcc-ccccccCCHHHHhccccchHHHHHHHHHHHHHHHhhhhcccCCCchhhhhhhcccccCC
Q psy7711 407 YKEKERINAKVLKDIKFPIE-FDAYELCTPELQAKLAPMREKFKIAEEKEAFEEFRTQYVFISIPMDEIYVRFGQKIYAP 485 (577)
Q Consensus 407 ~~~~~~~~~Ki~~~V~fp~~-Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 485 (577)
|+. ....|+...|.||.. |||++|+.++.
T Consensus 345 ~~~--~~~~K~~t~V~FP~~~LDm~~y~~~~~------------------------------------------------ 374 (440)
T cd02669 345 KNN--FFKEKNPTIVNFPIKNLDLSDYVHFDK------------------------------------------------ 374 (440)
T ss_pred CCC--CccccCCCEEECCCCccchhhhhCccc------------------------------------------------
Confidence 985 567899999999997 89999975321
Q ss_pred ccccccccccccchhcccCCCCCCCCCCCCCCCceeEEEeEEEEeecCCCCCCceEEEEECC-CCcEEEEeCCcceecCh
Q psy7711 486 VGDRIQDFGVKSTEFQSRGQGSSPGRVDIGSNNSGYYTLQAVLTHKGRTSSSGHYVAWVKKP-NGTWIKCDDDKVYPISE 564 (577)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~~GHY~a~vr~~-~~~W~~~nD~~V~~v~~ 564 (577)
........|+|+|||+|.|..+++|||+||+|+. +++||+|||+.|+++++
T Consensus 375 ----------------------------~~~~~~~~Y~L~avI~H~G~~~~sGHY~a~v~~~~~~~W~~fdD~~V~~v~~ 426 (440)
T cd02669 375 ----------------------------PSLNLSTKYNLVANIVHEGTPQEDGTWRVQLRHKSTNKWFEIQDLNVKEVLP 426 (440)
T ss_pred ----------------------------cccCCCceEEEEEEEEEeccCCCCeeEEEEEEcCCCCeEEEEECCeeeEcCH
Confidence 0011245899999999999755999999999974 78999999999999999
Q ss_pred hhhhc
Q psy7711 565 EEVLK 569 (577)
Q Consensus 565 ~~V~~ 569 (577)
++|+.
T Consensus 427 ~~v~~ 431 (440)
T cd02669 427 QLIFL 431 (440)
T ss_pred HHhcc
Confidence 99864
No 12
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.5e-51 Score=420.45 Aligned_cols=299 Identities=24% Similarity=0.377 Sum_probs=241.7
Q ss_pred cccccCCCCCchhHHHHHHHhhccHHHHHHHHhhcCCCCCCCCChhhHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHhh
Q psy7711 189 LPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDNMKISPSISPFIMLQVLHNV 268 (577)
Q Consensus 189 ~~~GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~l~~~L~~Lf~~l~~~~~~~~i~P~~~~~~l~~~ 268 (577)
|.+||.|+||||||||+||+|+++|+|++++++..... ......++.++|+.||..|..+. ...+.|..+.......
T Consensus 1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~~--~~~~~~~~~~~l~~lf~~~~~~~-~~~~~~~~~~~~~~~~ 77 (334)
T cd02659 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTE--DDDDNKSVPLALQRLFLFLQLSE-SPVKTTELTDKTRSFG 77 (334)
T ss_pred CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCcc--cCcccccHHHHHHHHHHHHHhCC-ccccCcchhheeccCC
Confidence 46899999999999999999999999999999863211 22345679999999999999874 3445554443111111
Q ss_pred CCccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCCCccchhhhccceEEeEEEEcCCCCCCCCCccccccee
Q psy7711 269 FPRFADKTDDGSYMQQDANECWTEMVRMLKTALPGENEEGQDSAKSSFIEQYFYTIMDTELKCSESETEPPTKGTESFQQ 348 (577)
Q Consensus 269 ~~~f~~~~~~~~~~QqDA~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~i~~lF~g~~~~~~~C~~c~~~~~s~~~e~f~~ 348 (577)
...|. .+.||||+||+..||+.|++++... ...+++.++|+|.+...++|..|+.. +.+.|.|+.
T Consensus 78 ~~~~~------~~~QqDa~Efl~~ll~~l~~~~~~~-------~~~~~i~~lF~g~~~~~~~C~~C~~~--s~~~e~f~~ 142 (334)
T cd02659 78 WDSLN------TFEQHDVQEFFRVLFDKLEEKLKGT-------GQEGLIKNLFGGKLVNYIICKECPHE--SEREEYFLD 142 (334)
T ss_pred CCCCC------cccchhHHHHHHHHHHHHHHHhccC-------cccchhhhhCceEEEeEEEecCCCce--ecccccceE
Confidence 23343 7899999999999999999988642 23467999999999999999999874 678899999
Q ss_pred eeeccCCCccchhHHHhhhhhhhh-h----ccCcCCCCCceEEEEEEeccCCCceEEEEEEEEEeccccccccccccccC
Q psy7711 349 LSCYITTDVKYMLPGLKNKLQDQI-T----KRSPSLDRDAVYVKTSKVSRLPAYLTIQFVRFFYKEKERINAKVLKDIKF 423 (577)
Q Consensus 349 L~l~i~~~~~~l~~~l~~~~~e~i-~----~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~V~f 423 (577)
|+++++. ..++.++|+.++..+. . +.|++|+....+.++..|.++|++|+|||+||.|+...+...|++.+|.|
T Consensus 143 l~l~i~~-~~~l~~~l~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vLii~l~Rf~~~~~~~~~~K~~~~v~f 221 (334)
T cd02659 143 LQVAVKG-KKNLEESLDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEF 221 (334)
T ss_pred EEEEcCC-CCCHHHHHHHhcCeeEecCCccEecCcCCCcccEEEEEEeecCCCEEEEEeeeeEEccccCcceeCCceEeC
Confidence 9999964 5679999999998543 2 57999999999999999999999999999999999877788999999999
Q ss_pred CccccccccCCHHHHhccccchHHHHHHHHHHHHHHHhhhhcccCCCchhhhhhhcccccCCccccccccccccchhccc
Q psy7711 424 PIEFDAYELCTPELQAKLAPMREKFKIAEEKEAFEEFRTQYVFISIPMDEIYVRFGQKIYAPVGDRIQDFGVKSTEFQSR 503 (577)
Q Consensus 424 p~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 503 (577)
|..||+.+|+......+. .
T Consensus 222 p~~Ldl~~~~~~~~~~~~--------------------------------~----------------------------- 240 (334)
T cd02659 222 PLELDMEPYTEKGLAKKE--------------------------------G----------------------------- 240 (334)
T ss_pred CceecCcccccccccccc--------------------------------c-----------------------------
Confidence 999999988765431100 0
Q ss_pred CCCCCCCCCCCCCCCceeEEEeEEEEeecCCCCCCceEEEEECC-CCcEEEEeCCcceecChhhhhccCCCCC
Q psy7711 504 GQGSSPGRVDIGSNNSGYYTLQAVLTHKGRTSSSGHYVAWVKKP-NGTWIKCDDDKVYPISEEEVLKLSGGGK 575 (577)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~~GHY~a~vr~~-~~~W~~~nD~~V~~v~~~~V~~~~~Gg~ 575 (577)
...........|+|+|||+|.|. +++|||+||+|.. ++.|++|||+.|+++++++|++.++||+
T Consensus 241 -------~~~~~~~~~~~Y~L~~vI~H~G~-~~~GHY~~~vk~~~~~~W~~~nD~~V~~i~~~~v~~~~~g~~ 305 (334)
T cd02659 241 -------DSEKKDSESYIYELHGVLVHSGD-AHGGHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAEEECFGGE 305 (334)
T ss_pred -------cccccCCCCeeEEEEEEEEecCC-CCCCCeEEEEECCCCCceEEEeCcccEECCHHHHHHHcCCCc
Confidence 00001123458999999999995 8999999999984 7999999999999999999999988886
No 13
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.5e-51 Score=407.01 Aligned_cols=240 Identities=32% Similarity=0.477 Sum_probs=207.4
Q ss_pred ccCCCCCchhHHHHHHHhhccHHHHHHHHhhcCCCCCCCCChhhHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHhhCCc
Q psy7711 192 GLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDNMKISPSISPFIMLQVLHNVFPR 271 (577)
Q Consensus 192 GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~l~~~L~~Lf~~l~~~~~~~~i~P~~~~~~l~~~~~~ 271 (577)
||.|+||||||||+||+|+++|+||+++++ +|..|+..+....+.
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~-----------------------------------~P~~~~~~l~~~~~~ 45 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE-----------------------------------TPKELFSQVCRKAPQ 45 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH-----------------------------------CHHHHHHHHHHhhHh
Confidence 899999999999999999999999999974 677888888888888
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCCCccchhhhccceEEeEEEEcCCCCCCCCCcccccceeeee
Q psy7711 272 FADKTDDGSYMQQDANECWTEMVRMLKTALPGENEEGQDSAKSSFIEQYFYTIMDTELKCSESETEPPTKGTESFQQLSC 351 (577)
Q Consensus 272 f~~~~~~~~~~QqDA~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~i~~lF~g~~~~~~~C~~c~~~~~s~~~e~f~~L~l 351 (577)
|. .+.||||+|||..||+.|+ +++.++|.|++.++++|..|+.. +.+.|.|+.|+|
T Consensus 46 f~------~~~QqDA~Efl~~lld~l~----------------~~i~~~F~G~~~~~i~C~~C~~~--s~~~E~f~~L~L 101 (279)
T cd02667 46 FK------GYQQQDSHELLRYLLDGLR----------------TFIDSIFGGELTSTIMCESCGTV--SLVYEPFLDLSL 101 (279)
T ss_pred hc------CCchhhHHHHHHHHHHHHH----------------HhhhhhcceEEEEEEEcCCCCCE--eCccccceEEec
Confidence 87 8899999999999999998 25889999999999999999984 678899999999
Q ss_pred ccCC---CccchhHHHhhhhhhh-hh----ccCcCCCCCceEEEEEEeccCCCceEEEEEEEEEeccccccccccccccC
Q psy7711 352 YITT---DVKYMLPGLKNKLQDQ-IT----KRSPSLDRDAVYVKTSKVSRLPAYLTIQFVRFFYKEKERINAKVLKDIKF 423 (577)
Q Consensus 352 ~i~~---~~~~l~~~l~~~~~e~-i~----~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~V~f 423 (577)
+++. ...+|.++|+.++.++ +. +.|+.|+. +.|+..|.++|++|+|||+||.|+.. +...|++.+|.|
T Consensus 102 p~~~~~~~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~---a~k~~~i~~~P~~Lii~LkRF~~~~~-~~~~Ki~~~v~f 177 (279)
T cd02667 102 PRSDEIKSECSIESCLKQFTEVEILEGNNKFACENCTK---AKKQYLISKLPPVLVIHLKRFQQPRS-ANLRKVSRHVSF 177 (279)
T ss_pred CCCcccCCCCCHHHHHHhhcCeeEecCCCcccCCccCc---eeeEeEhhhCCCeEEEEEeccccCcc-cCceecCceEeC
Confidence 8753 3457999999999854 33 47888877 78999999999999999999999975 357899999999
Q ss_pred CccccccccCCHHHHhccccchHHHHHHHHHHHHHHHhhhhcccCCCchhhhhhhcccccCCccccccccccccchhccc
Q psy7711 424 PIEFDAYELCTPELQAKLAPMREKFKIAEEKEAFEEFRTQYVFISIPMDEIYVRFGQKIYAPVGDRIQDFGVKSTEFQSR 503 (577)
Q Consensus 424 p~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 503 (577)
|..|||.+|+.+...
T Consensus 178 P~~Ldl~~~~~~~~~----------------------------------------------------------------- 192 (279)
T cd02667 178 PEILDLAPFCDPKCN----------------------------------------------------------------- 192 (279)
T ss_pred CCccchhhccCcccc-----------------------------------------------------------------
Confidence 999999999765310
Q ss_pred CCCCCCCCCCCCCCCceeEEEeEEEEeecCCCCCCceEEEEECC----------------------CCcEEEEeCCccee
Q psy7711 504 GQGSSPGRVDIGSNNSGYYTLQAVLTHKGRTSSSGHYVAWVKKP----------------------NGTWIKCDDDKVYP 561 (577)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~~GHY~a~vr~~----------------------~~~W~~~nD~~V~~ 561 (577)
.........|+|+|||+|.|.+ ++|||+||+|.. ++.||+|||+.|++
T Consensus 193 ---------~~~~~~~~~Y~L~~vi~H~G~~-~~GHY~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~dD~~V~~ 262 (279)
T cd02667 193 ---------SSEDKSSVLYRLYGVVEHSGTM-RSGHYVAYVKVRPPQQRLSDLTKSKPAADEAGPGSGQWYYISDSDVRE 262 (279)
T ss_pred ---------ccccCCCceEEEEEEEEEeCCC-CCCEeEEEEEcCccccccccccccccccccCCCCCCcEEEEECCccEE
Confidence 0001124589999999999975 999999999974 57999999999999
Q ss_pred cChhhhhc
Q psy7711 562 ISEEEVLK 569 (577)
Q Consensus 562 v~~~~V~~ 569 (577)
++.++|+.
T Consensus 263 v~~~~v~~ 270 (279)
T cd02667 263 VSLEEVLK 270 (279)
T ss_pred CCHHHhcc
Confidence 99999976
No 14
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.1e-46 Score=376.01 Aligned_cols=298 Identities=24% Similarity=0.350 Sum_probs=215.4
Q ss_pred ccccCCCCCchhHHHHHHHhhccHHHHHHHHhhcCCCC------------C-CC------CChhhHHHHHHHHHHHHhcC
Q psy7711 190 PAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQ------------P-GS------NPAQSITASLRDLYECMDNM 250 (577)
Q Consensus 190 ~~GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~~~~------------~-~~------~~~~~l~~~L~~Lf~~l~~~ 250 (577)
|+||.|+||||||||+||+|+++|+||+++++...... . .. ....+++.+|+.||..|+.+
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s 80 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS 80 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 78999999999999999999999999999998652210 0 00 12346999999999999987
Q ss_pred CCCCCCChHHHHHHHHhhCCccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC------CCCCCccchhhhccceE
Q psy7711 251 KISPSISPFIMLQVLHNVFPRFADKTDDGSYMQQDANECWTEMVRMLKTALPGENEE------GQDSAKSSFIEQYFYTI 324 (577)
Q Consensus 251 ~~~~~i~P~~~~~~l~~~~~~f~~~~~~~~~~QqDA~Efl~~ll~~L~~~~~~~~~~------~~~~~~~~~i~~lF~g~ 324 (577)
. ..++.|..++..++ ..||||+||+..||+.|+.+++..... .......++|.++|+|+
T Consensus 81 ~-~~~v~P~~~l~~l~--------------~~QQDa~Ef~~~lld~Le~~lk~~~~~~~~~~~~~~~~~~~~I~~lF~G~ 145 (343)
T cd02666 81 N-TRSVTPSKELAYLA--------------LRQQDVTECIDNVLFQLEVALEPISNAFAGPDTEDDKEQSDLIKRLFSGK 145 (343)
T ss_pred C-CCccCcHHHHHhcc--------------ccccchHHHHHHHHHHHHHHhcCccccccCcccccccchhhhhhHhceee
Confidence 5 57899999987653 289999999999999999999765431 11224467899999999
Q ss_pred EeEEEEcCCCC-CCCCCcccccceeeeeccCC---------CccchhHHHhhhhhhhhhccCcCCCCCceEEEEEEeccC
Q psy7711 325 MDTELKCSESE-TEPPTKGTESFQQLSCYITT---------DVKYMLPGLKNKLQDQITKRSPSLDRDAVYVKTSKVSRL 394 (577)
Q Consensus 325 ~~~~~~C~~c~-~~~~s~~~e~f~~L~l~i~~---------~~~~l~~~l~~~~~e~i~~~c~~c~~~~~~~k~~~i~~l 394 (577)
+.+.++|..|+ .+..+.+.|+|+.|+|+|.. +..+|.+||+.|+++++ |.++
T Consensus 146 ~~~~i~c~~~~~~~~~s~~~E~F~~L~l~I~~~~~~~~~~~~~~~L~d~L~~~~~~e~------------------~~~~ 207 (343)
T cd02666 146 TKQQLVPESMGNQPSVRTKTERFLSLLVDVGKKGREIVVLLEPKDLYDALDRYFDYDS------------------LTKL 207 (343)
T ss_pred EEEEEEecccCCCCCCccccceeEEEEEecCcccccccccCCCCCHHHHHHHhcChhh------------------hccC
Confidence 99999999997 23467889999999999987 78899999999998776 9999
Q ss_pred CCceEEEEEEEEEeccccccccccccccCCccccccccCCHHHHhccccchHHHHHHHHHHHHHHHhhhhcccCCCchhh
Q psy7711 395 PAYLTIQFVRFFYKEKERINAKVLKDIKFPIEFDAYELCTPELQAKLAPMREKFKIAEEKEAFEEFRTQYVFISIPMDEI 474 (577)
Q Consensus 395 P~~L~i~l~Rf~~~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (577)
|++|.|||+ ++.......+.+++.+||...|..++...+..+.+ ...+..+..+.......
T Consensus 208 P~vl~~qlq---~~~~~~~~~~~~dry~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~------------- 268 (343)
T cd02666 208 PQRSQVQAQ---LAQPLQRELISMDRYELPSSIDDIDELIREAIQSE---SSLVRQAQNELAELKHE------------- 268 (343)
T ss_pred CHHHHHHHh---hcccccchheeeccccccchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-------------
Confidence 999999998 22222334445555555554444332221110000 00000000000000000
Q ss_pred hhhhcccccCCccccccccccccchhcccCCCCCCCCCCCCCCCceeEEEeEEEEeecCCCCCCceEEEEECC-CCcEEE
Q psy7711 475 YVRFGQKIYAPVGDRIQDFGVKSTEFQSRGQGSSPGRVDIGSNNSGYYTLQAVLTHKGRTSSSGHYVAWVKKP-NGTWIK 553 (577)
Q Consensus 475 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~~GHY~a~vr~~-~~~W~~ 553 (577)
+... | .......|+|+|||+|.|. +++|||++|+|+. ++.||+
T Consensus 269 -------~~~~--------------~--------------~~~~~~~Y~L~avv~H~G~-~~~GHY~~~~~~~~~~~W~~ 312 (343)
T cd02666 269 -------IEKQ--------------F--------------DDLKSYGYRLHAVFIHRGE-ASSGHYWVYIKDFEENVWRK 312 (343)
T ss_pred -------HHHh--------------h--------------cccCCCceEEEEEEEeecC-CCCCeEEEEEEECCCCeEEE
Confidence 0000 0 1123458999999999997 6999999999975 589999
Q ss_pred EeCCcceecChhhhhccCCCCC
Q psy7711 554 CDDDKVYPISEEEVLKLSGGGK 575 (577)
Q Consensus 554 ~nD~~V~~v~~~~V~~~~~Gg~ 575 (577)
|||+.|++++.++|+...+|+.
T Consensus 313 ~dD~~V~~v~~~ev~~~~~~~~ 334 (343)
T cd02666 313 YNDETVTVVPASEVFLFTLGNT 334 (343)
T ss_pred EECCeeEEecHHHHhhcccCCC
Confidence 9999999999999998866653
No 15
>KOG1866|consensus
Probab=100.00 E-value=1.1e-47 Score=391.58 Aligned_cols=321 Identities=23% Similarity=0.288 Sum_probs=262.1
Q ss_pred CCCCCchhhhcccccccccCCCCCchhHHHHHHHhhccHHHHHHHHhhcCCCC-CCCCChhhHHHHHHHHHHHHhcCCCC
Q psy7711 175 SPSISPFIMLQGRYLPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQ-PGSNPAQSITASLRDLYECMDNMKIS 253 (577)
Q Consensus 175 ~~~~~~~~~~~~~~~~~GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~~~~-~~~~~~~~l~~~L~~Lf~~l~~~~~~ 253 (577)
++...|....+...+.+||+|-|+|||||+++|-|+++|.+|..+........ ....-...+++.++.+|..|..++ -
T Consensus 80 E~~YlppVgsRpp~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~td~pd~s~~e~vl~~lQ~iF~hL~~s~-l 158 (944)
T KOG1866|consen 80 EWEYLPPVGSRPPEGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGTTDLPDMSGDEKVLRHLQVIFGHLAASQ-L 158 (944)
T ss_pred CcccCCCcCCCCCcceeeecCCCchHHHhhhhhhhhhcccccchhhhhcccccchhhcchHHHHHHHHHHHHHHHHHh-h
Confidence 33344444455667789999999999999999999999999998865554311 111222338999999999999886 5
Q ss_pred CCCChHHHHHHHHhhCCccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCCCccchhhhccceEEeEEEEcCC
Q psy7711 254 PSISPFIMLQVLHNVFPRFADKTDDGSYMQQDANECWTEMVRMLKTALPGENEEGQDSAKSSFIEQYFYTIMDTELKCSE 333 (577)
Q Consensus 254 ~~i~P~~~~~~l~~~~~~f~~~~~~~~~~QqDA~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~i~~lF~g~~~~~~~C~~ 333 (577)
..+.|..|...++.-. .+...-+||||-||+..|||.+++.+++.. ...++...|+|.+..+-.|.+
T Consensus 159 QyyVPeg~Wk~Fr~~~------~pln~reqhDA~eFf~sLld~~De~LKklg-------~p~lf~n~f~G~ysdqKIC~~ 225 (944)
T KOG1866|consen 159 QYYVPEGFWKQFRLWG------EPLNLREQHDALEFFNSLLDSLDEALKKLG-------HPQLFSNTFGGSYSDQKICQG 225 (944)
T ss_pred hhhcchhHHHHhhccC------CccchHhhhhHHHHHHHHHHHHHHHHHHhC-------CcHHHHHHhcCccchhhhhcc
Confidence 5888998887776533 222367999999999999999999998753 466889999999999999999
Q ss_pred CCCCCCCcccccceeeeeccCCCccchhHHHhhhhhhhhh-----ccCcCCCCCceEEEEEEeccCCCceEEEEEEEEEe
Q psy7711 334 SETEPPTKGTESFQQLSCYITTDVKYMLPGLKNKLQDQIT-----KRSPSLDRDAVYVKTSKVSRLPAYLTIQFVRFFYK 408 (577)
Q Consensus 334 c~~~~~s~~~e~f~~L~l~i~~~~~~l~~~l~~~~~e~i~-----~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~ 408 (577)
|.++ ....|.|..|++.|. ..+|+++|++|++.++. |+|++|+.+....|++.|.+||++|+|||+||.||
T Consensus 226 CpHR--Y~~eE~F~~l~l~i~--~~nLeesLeqfv~gevlEG~nAYhCeKCdeK~~TvkRt~ik~LPsvl~IqLkRF~yD 301 (944)
T KOG1866|consen 226 CPHR--YECEESFTTLNLDIR--HQNLEESLEQFVKGEVLEGANAYHCEKCDEKVDTVKRTCIKKLPSVLAIQLKRFDYD 301 (944)
T ss_pred CCcc--cCccccceeeeeecc--cchHHHHHHHHHHHHHhcCcchhhhhhhhhhhHhHHHHHHhhCChhheehhhhccch
Confidence 9997 388999999999997 67899999999986654 69999999999999999999999999999999999
Q ss_pred ccccccccccccccCCccccccccCCHHHHhccccchHHHHHHHHHHHHHHHhhhhcccCCCchhhhhhhcccccCCccc
Q psy7711 409 EKERINAKVLKDIKFPIEFDAYELCTPELQAKLAPMREKFKIAEEKEAFEEFRTQYVFISIPMDEIYVRFGQKIYAPVGD 488 (577)
Q Consensus 409 ~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 488 (577)
..++...|.+..+.||.+|||.+|........-.+ . .++
T Consensus 302 ~e~~~~iK~n~~frFP~~ldMePYtvsg~a~~e~~------------------------------~--------~~~--- 340 (944)
T KOG1866|consen 302 WERECAIKFNDYFRFPRELDMEPYTVSGVAKLEGE------------------------------N--------VES--- 340 (944)
T ss_pred hhhccccccchhcccchhhcCCceeehhhhhhccc------------------------------c--------CCc---
Confidence 99999999999999999999999987765210000 0 000
Q ss_pred cccccccccchhcccCCCCCCCCCCCCCCCceeEEEeEEEEeecCCCCCCceEEEEECC----CCcEEEEeCCcceecCh
Q psy7711 489 RIQDFGVKSTEFQSRGQGSSPGRVDIGSNNSGYYTLQAVLTHKGRTSSSGHYVAWVKKP----NGTWIKCDDDKVYPISE 564 (577)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~~GHY~a~vr~~----~~~W~~~nD~~V~~v~~ 564 (577)
+....++..+.+|+|+||++|+|. |.+|||++||++. +++||+|||..|++++.
T Consensus 341 ---------------------g~~~e~s~~t~~YeLvGVlvHSGq-AsaGHYySfIk~rr~~~~~kWykfnD~~Vte~~~ 398 (944)
T KOG1866|consen 341 ---------------------GQQLEQSAGTTKYELVGVLVHSGQ-ASAGHYYSFIKQRRGEDGNKWYKFNDGDVTECKM 398 (944)
T ss_pred ---------------------CcccccccCcceeEEEEEEEeccc-ccCcchhhhhhhhccCCCCceEeccCccccccch
Confidence 000111234568999999999997 9999999999974 67999999999999999
Q ss_pred hhhhccCCCCCC
Q psy7711 565 EEVLKLSGGGKV 576 (577)
Q Consensus 565 ~~V~~~~~Gg~~ 576 (577)
.++...++||+|
T Consensus 399 n~me~~cfGGey 410 (944)
T KOG1866|consen 399 NEMENECFGGEY 410 (944)
T ss_pred hhHHHHhhcchh
Confidence 999999999998
No 16
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.8e-46 Score=359.82 Aligned_cols=202 Identities=31% Similarity=0.514 Sum_probs=178.8
Q ss_pred ccCCCCCchhHHHHHHHhhccHHHHHHHHhhcCCCCCCCCChhhHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHhhCCc
Q psy7711 192 GLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDNMKISPSISPFIMLQVLHNVFPR 271 (577)
Q Consensus 192 GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~l~~~L~~Lf~~l~~~~~~~~i~P~~~~~~l~~~~~~ 271 (577)
||.|+||||||||+||+|+++|+||+++.+..
T Consensus 1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~~------------------------------------------------ 32 (240)
T cd02662 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL------------------------------------------------ 32 (240)
T ss_pred CCcCCCCccHHHHHHHHHHCCHHHHHHHHHHH------------------------------------------------
Confidence 89999999999999999999999999986311
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCCCccchhhhccceEEeEEEEcCCCCCCCCCcccccceeeee
Q psy7711 272 FADKTDDGSYMQQDANECWTEMVRMLKTALPGENEEGQDSAKSSFIEQYFYTIMDTELKCSESETEPPTKGTESFQQLSC 351 (577)
Q Consensus 272 f~~~~~~~~~~QqDA~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~i~~lF~g~~~~~~~C~~c~~~~~s~~~e~f~~L~l 351 (577)
.||||+|||..||+.|+. .+.++|.|.+.+.++|..|+..+ ..+.|+|+.|++
T Consensus 33 ----------~QqDa~EFl~~ll~~l~~----------------~i~~~F~g~~~~~i~C~~C~~~s-~~~~e~f~~LsL 85 (240)
T cd02662 33 ----------EQQDAHELFQVLLETLEQ----------------LLKFPFDGLLASRIVCLQCGESS-KVRYESFTMLSL 85 (240)
T ss_pred ----------hhcCHHHHHHHHHHHHHH----------------hccCccccEEEEEEEeCCCCCcc-CcceeeeeeeEe
Confidence 699999999999999993 36788999999999999999852 335899999999
Q ss_pred ccCCC----ccchhHHHhhhhhhhhh--ccCcCCCCCceEEEEEEeccCCCceEEEEEEEEEeccccccccccccccCCc
Q psy7711 352 YITTD----VKYMLPGLKNKLQDQIT--KRSPSLDRDAVYVKTSKVSRLPAYLTIQFVRFFYKEKERINAKVLKDIKFPI 425 (577)
Q Consensus 352 ~i~~~----~~~l~~~l~~~~~e~i~--~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~V~fp~ 425 (577)
+|+.. ..+|.++|+.++.++.. +.|+.| +..|.++|++|+|||+||.|+.. +...|++.+|.||.
T Consensus 86 ~ip~~~~~~~~sl~~~L~~~~~~E~l~~~~C~~C--------~~~i~~lP~vLii~LkRF~~~~~-~~~~K~~~~v~fp~ 156 (240)
T cd02662 86 PVPNQSSGSGTTLEHCLDDFLSTEIIDDYKCDRC--------QTVIVRLPQILCIHLSRSVFDGR-GTSTKNSCKVSFPE 156 (240)
T ss_pred cccccCCCCCCCHHHHHHHhcCcccccCcCCCCC--------eEEeecCCcEEEEEEEEEEEcCC-CceeeeccEEECCC
Confidence 99875 46899999999985543 579998 67899999999999999999987 77899999999999
Q ss_pred cccccccCCHHHHhccccchHHHHHHHHHHHHHHHhhhhcccCCCchhhhhhhcccccCCccccccccccccchhcccCC
Q psy7711 426 EFDAYELCTPELQAKLAPMREKFKIAEEKEAFEEFRTQYVFISIPMDEIYVRFGQKIYAPVGDRIQDFGVKSTEFQSRGQ 505 (577)
Q Consensus 426 ~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 505 (577)
.|.
T Consensus 157 ~l~----------------------------------------------------------------------------- 159 (240)
T cd02662 157 RLP----------------------------------------------------------------------------- 159 (240)
T ss_pred ccC-----------------------------------------------------------------------------
Confidence 871
Q ss_pred CCCCCCCCCCCCCceeEEEeEEEEeecCCCCCCceEEEEECC---------------------CCcEEEEeCCcceecCh
Q psy7711 506 GSSPGRVDIGSNNSGYYTLQAVLTHKGRTSSSGHYVAWVKKP---------------------NGTWIKCDDDKVYPISE 564 (577)
Q Consensus 506 ~~~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~~GHY~a~vr~~---------------------~~~W~~~nD~~V~~v~~ 564 (577)
...|+|+|||+|.|. .++|||+||+|.+ .+.||+|||+.|+++++
T Consensus 160 -------------~~~Y~L~avi~H~G~-~~~GHY~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~ 225 (240)
T cd02662 160 -------------KVLYRLRAVVVHYGS-HSSGHYVCYRRKPLFSKDKEPGSFVRMREGPSSTSHPWWRISDTTVKEVSE 225 (240)
T ss_pred -------------CceEEEEEEEEEecc-CCCceEEEEEeCCCcccccccccccccccccCccCCCEEEEechheEEeCH
Confidence 126999999999997 5999999999985 38999999999999999
Q ss_pred hhhh
Q psy7711 565 EEVL 568 (577)
Q Consensus 565 ~~V~ 568 (577)
++|+
T Consensus 226 ~~v~ 229 (240)
T cd02662 226 SEVL 229 (240)
T ss_pred HHHh
Confidence 9996
No 17
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-47 Score=383.03 Aligned_cols=291 Identities=23% Similarity=0.297 Sum_probs=246.2
Q ss_pred ccccccCCCCCchhHHHHHHHhhccHHHHHHHHhhcCC----CCCCCCChhhHHHHHHHHHHHHhcCCCCCCCChHHHHH
Q psy7711 188 YLPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGG----LQPGSNPAQSITASLRDLYECMDNMKISPSISPFIMLQ 263 (577)
Q Consensus 188 ~~~~GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~~----~~~~~~~~~~l~~~L~~Lf~~l~~~~~~~~i~P~~~~~ 263 (577)
-|.+||.|+||||||||.||||.|++.+|++++.-... ..++......++.++.+|..++..++ ..++.|..|..
T Consensus 263 ~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~~-~haf~Ps~fK~ 341 (823)
T COG5560 263 AGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGN-LHAFTPSGFKK 341 (823)
T ss_pred ccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCcc-ccccChHHHHH
Confidence 37899999999999999999999999999999753322 12344556788899999999999876 66999999999
Q ss_pred HHHhhCCccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC-------------------------CCCCCCccchhh
Q psy7711 264 VLHNVFPRFADKTDDGSYMQQDANECWTEMVRMLKTALPGENE-------------------------EGQDSAKSSFIE 318 (577)
Q Consensus 264 ~l~~~~~~f~~~~~~~~~~QqDA~Efl~~ll~~L~~~~~~~~~-------------------------~~~~~~~~~~i~ 318 (577)
.+...+..|. ||.|||++||+.++||.||+.++..-. ..+..+..++|.
T Consensus 342 tIG~fn~~fs------Gy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRNdSiIt 415 (823)
T COG5560 342 TIGSFNEEFS------GYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIIT 415 (823)
T ss_pred HHhhhHHHhc------CccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcCcccHH
Confidence 9999999999 999999999999999999999984421 012356789999
Q ss_pred hccceEEeEEEEcCCCCCCCCCcccccceeeeeccC--------------------------------------------
Q psy7711 319 QYFYTIMDTELKCSESETEPPTKGTESFQQLSCYIT-------------------------------------------- 354 (577)
Q Consensus 319 ~lF~g~~~~~~~C~~c~~~~~s~~~e~f~~L~l~i~-------------------------------------------- 354 (577)
++|.|.+++++.|..|+. ++.++++|++|+||+|
T Consensus 416 dLFqgmyKSTL~Cp~C~~--vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~pl~iel~~sSt~~~lk~lv~~~~gk 493 (823)
T COG5560 416 DLFQGMYKSTLTCPGCGS--VSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLKIELDASSTIRGLKKLVDAEYGK 493 (823)
T ss_pred HHHHHHhhceeeccCcCc--eeeeecchhhccccCchhhcccccEEEECCCCCCCceEEEEeccchHHHHHHHHHHHhcc
Confidence 999999999999999998 5899999999999997
Q ss_pred --------------------------------------------------------------------------------
Q psy7711 355 -------------------------------------------------------------------------------- 354 (577)
Q Consensus 355 -------------------------------------------------------------------------------- 354 (577)
T Consensus 494 ~gc~ei~v~~iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe~~~ngi~vpvvh~~~~~gYks~rlFg~pflqlnv~~~~~ 573 (823)
T COG5560 494 LGCFEIKVMCIYYGGNYNMLEPADKVLLQDIPQTDFVYLYETNDNGIEVPVVHLRIEKGYKSKRLFGDPFLQLNVLIKAS 573 (823)
T ss_pred CCccceeEEEEEeccchhhcchhhHHHHhhcCccceEEEeecCCCCeEEEEEeccccccccchhhhCCcceEEEeecchh
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy7711 355 -------------------------------------------------------------------------------- 354 (577)
Q Consensus 355 -------------------------------------------------------------------------------- 354 (577)
T Consensus 574 i~~kLvkE~~ell~~v~~k~tdvd~~~~q~~l~r~es~p~~wl~l~teid~kree~veeE~~~n~nd~vvi~cew~ek~y 653 (823)
T COG5560 574 IYDKLVKEFEELLVLVEMKKTDVDLVSEQVRLLREESSPSSWLKLETEIDTKREEQVEEEGQMNFNDAVVISCEWEEKRY 653 (823)
T ss_pred hHHHHHHHHHHHHHHHhhcchhhhhhhhhccchhcccCcchhhhhhhhccchhhhhhhhhhccCCCcceEEeeeccccch
Confidence
Q ss_pred ------------------CCccchhHHHhhhhhhhhhc-----cCcCCCCCceEEEEEEeccCCCceEEEEEEEEEeccc
Q psy7711 355 ------------------TDVKYMLPGLKNKLQDQITK-----RSPSLDRDAVYVKTSKVSRLPAYLTIQFVRFFYKEKE 411 (577)
Q Consensus 355 ------------------~~~~~l~~~l~~~~~e~i~~-----~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~ 411 (577)
....+|++||..|.+.+... +|+.|.....++|+..|.++|.||+|||+||.+++
T Consensus 654 ~~lFsy~~lw~~~ei~~~~rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrqasKqmelwrlP~iLiihLkRFss~r-- 731 (823)
T COG5560 654 LSLFSYDPLWTIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVR-- 731 (823)
T ss_pred hhhhcCCccchhHHhhhccCCCcHHHHHHHhccHhhcCCcccccCCchHhhhhhhhhhhhhcCChheeeehhhhhhcc--
Confidence 13346788888888866542 89999999999999999999999999999999887
Q ss_pred cccccccccccCCc-cccccccCCHHHHhccccchHHHHHHHHHHHHHHHhhhhcccCCCchhhhhhhcccccCCccccc
Q psy7711 412 RINAKVLKDIKFPI-EFDAYELCTPELQAKLAPMREKFKIAEEKEAFEEFRTQYVFISIPMDEIYVRFGQKIYAPVGDRI 490 (577)
Q Consensus 412 ~~~~Ki~~~V~fp~-~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 490 (577)
....||..-|.||. .|||+.+...-
T Consensus 732 sfrdKiddlVeyPiddldLs~~~~~~------------------------------------------------------ 757 (823)
T COG5560 732 SFRDKIDDLVEYPIDDLDLSGVEYMV------------------------------------------------------ 757 (823)
T ss_pred cchhhhhhhhccccccccccceEEee------------------------------------------------------
Confidence 46899999999997 58886552110
Q ss_pred cccccccchhcccCCCCCCCCCCCCCCCceeEEEeEEEEeecCCCCCCceEEEEECC-CCcEEEEeCCcceecChhhhhc
Q psy7711 491 QDFGVKSTEFQSRGQGSSPGRVDIGSNNSGYYTLQAVLTHKGRTSSSGHYVAWVKKP-NGTWIKCDDDKVYPISEEEVLK 569 (577)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~~GHY~a~vr~~-~~~W~~~nD~~V~~v~~~~V~~ 569 (577)
.+..-.|+|+||=.|+|. ..+|||+||+|+. +++||+|||++|+++++++...
T Consensus 758 -------------------------~~p~liydlyavDNHygg-lsgGHYtAyarn~~n~~wy~fdDsritevdped~vt 811 (823)
T COG5560 758 -------------------------DDPRLIYDLYAVDNHYGG-LSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVT 811 (823)
T ss_pred -------------------------cCcceEEEeeeccccccc-cCCcceeeeeecccCCceEEecCccccccCcccccc
Confidence 011247999999999995 9999999999996 6799999999999999998654
No 18
>KOG0944|consensus
Probab=100.00 E-value=3.1e-45 Score=371.71 Aligned_cols=232 Identities=22% Similarity=0.286 Sum_probs=196.3
Q ss_pred ccccccCCCCCchhHHHHHHHhhccHHHHHHHHhhcC-CCCCCCCChhhHHHHHHHHHHHHhcCCCCC---------CCC
Q psy7711 188 YLPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKG-GLQPGSNPAQSITASLRDLYECMDNMKISP---------SIS 257 (577)
Q Consensus 188 ~~~~GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~-~~~~~~~~~~~l~~~L~~Lf~~l~~~~~~~---------~i~ 257 (577)
.+.+||.|+||+||||||+|+|+++|.|...+..... .......+..+|.++|.+|...|.+++++. .|+
T Consensus 305 pgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~~~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~p~~~~~~qngIs 384 (763)
T KOG0944|consen 305 PGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQERIFNCYPKDPTNDFNCQLAKLLHGMLSGKYSKPLMDPSNQNGIS 384 (763)
T ss_pred CCccceeecCcchhHHHHHHHheecccHHHhhccccceeecCCCCcchhHHHHHHHHHHHhhcCcccCccCCccccCCcC
Confidence 4569999999999999999999999999998877622 122345778899999999999999986544 689
Q ss_pred hHHHHHHHHhhCCccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCCCccchhhhccceEEeEEEEcCCCCCC
Q psy7711 258 PFIMLQVLHNVFPRFADKTDDGSYMQQDANECWTEMVRMLKTALPGENEEGQDSAKSSFIEQYFYTIMDTELKCSESETE 337 (577)
Q Consensus 258 P~~~~~~l~~~~~~f~~~~~~~~~~QqDA~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~i~~lF~g~~~~~~~C~~c~~~ 337 (577)
|..|...+++-+|.|. .++||||+|||++||+.|++..... ...+.++|.+.+..++.|..|.+.
T Consensus 385 P~mFK~~igknHpeFs------t~~QQDA~EFllfLl~ki~~n~rs~---------~~nptd~frF~ve~Rv~C~~c~kV 449 (763)
T KOG0944|consen 385 PLMFKALIGKNHPEFS------TNRQQDAQEFLLFLLEKIRENSRSS---------LPNPTDLFRFEVEDRVSCLGCRKV 449 (763)
T ss_pred HHHHHHHHcCCCcccc------chhhhhHHHHHHHHHHHHhhccccc---------CCCHHHHHHhhhhhhhhhhccccc
Confidence 9999999999999998 8999999999999999999865432 145889999999999999999996
Q ss_pred CCCcccccceeeeeccCC-----CccchhHHHhhhhhhhh-hccCcCCCCCceEEEEEEeccCCCceEEEEEEEEEeccc
Q psy7711 338 PPTKGTESFQQLSCYITT-----DVKYMLPGLKNKLQDQI-TKRSPSLDRDAVYVKTSKVSRLPAYLTIQFVRFFYKEKE 411 (577)
Q Consensus 338 ~~s~~~e~f~~L~l~i~~-----~~~~l~~~l~~~~~e~i-~~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~ 411 (577)
+++ .+.-+.|.++++. ..-.+..||+.|+...+ .++|+.|+.+..++|+++|.++|+||+||+.||.|. .
T Consensus 450 rYs--~~~~~~i~lpv~~~~~v~~~v~~~~cleaff~pq~~df~s~ac~~K~~a~kt~~~ksfP~yLiiqv~rf~~~--d 525 (763)
T KOG0944|consen 450 RYS--YESEYLIQLPVPMTNEVREKVPISACLEAFFEPQVDDFWSTACGEKKGATKTTRFKSFPDYLIIQVGRFTLQ--D 525 (763)
T ss_pred ccc--chhheeeEeeccccccccccCCHHHHHHHhcCCcchhhhhHhhcCccccccccccccCCceEEEEeeEEEec--C
Confidence 544 4555555555542 22368999999999754 568999999999999999999999999999999994 4
Q ss_pred cccccccccccCCccccccccCCHHHH
Q psy7711 412 RINAKVLKDIKFPIEFDAYELCTPELQ 438 (577)
Q Consensus 412 ~~~~Ki~~~V~fp~~Ldl~~~~~~~~~ 438 (577)
++..|+...|..|..||++.|.+..++
T Consensus 526 w~pkKld~~iempe~ldls~~rs~g~~ 552 (763)
T KOG0944|consen 526 WVPKKLDVSIEMPEELDLSSYRSKGLQ 552 (763)
T ss_pred ceeeeeccceecchhhchhhhhhcCCC
Confidence 899999999999999999999877643
No 19
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-45 Score=339.55 Aligned_cols=291 Identities=24% Similarity=0.336 Sum_probs=216.7
Q ss_pred cccccccCCCCCchhHHHHHHHhhccHHHHHHHHh------hcCCCCCCCCChhhHHHHHHHHHHHHhcCCCCCCCChHH
Q psy7711 187 RYLPAGLNNLGNTCYMNAVIQCLKTVPELRKALKN------LKGGLQPGSNPAQSITASLRDLYECMDNMKISPSISPFI 260 (577)
Q Consensus 187 ~~~~~GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~~------~~~~~~~~~~~~~~l~~~L~~Lf~~l~~~~~~~~i~P~~ 260 (577)
...|.||.|.|||||||++||||+.+..+..+++. ++.... ...+.......+..|+..|.... ...|+|..
T Consensus 68 n~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~p-rg~~g~~~~k~F~~l~~~~~~Hg-~~sis~~n 145 (415)
T COG5533 68 NLPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFP-RGKPGSNAFKQFIALYETPGCHG-PKSISPRN 145 (415)
T ss_pred ccCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCC-CCCcchhHHHHHHHHHhccccCC-CcccchHH
Confidence 35689999999999999999999999999885532 221111 11122244555666666554432 55799999
Q ss_pred HHHHHHhhCCccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC----------------------------CCCC
Q psy7711 261 MLQVLHNVFPRFADKTDDGSYMQQDANECWTEMVRMLKTALPGENEEG----------------------------QDSA 312 (577)
Q Consensus 261 ~~~~l~~~~~~f~~~~~~~~~~QqDA~Efl~~ll~~L~~~~~~~~~~~----------------------------~~~~ 312 (577)
|+..+..+++.|. +.+||||+||+.++||.||++++...+.. ....
T Consensus 146 F~~i~~~~n~~fs------~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EWn~~L~s 219 (415)
T COG5533 146 FIDILSGRNKLFS------GDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWNLHLRS 219 (415)
T ss_pred HHHHHcccccccc------ccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhhHHhhcc
Confidence 9999999999998 78999999999999999999987664310 1123
Q ss_pred ccchhhhccceEEeEEEEcCCCCCCCCCcccccceeeeeccCCCc-cchhHHHhhhhhhhhh-----ccCcCCCCCceEE
Q psy7711 313 KSSFIEQYFYTIMDTELKCSESETEPPTKGTESFQQLSCYITTDV-KYMLPGLKNKLQDQIT-----KRSPSLDRDAVYV 386 (577)
Q Consensus 313 ~~~~i~~lF~g~~~~~~~C~~c~~~~~s~~~e~f~~L~l~i~~~~-~~l~~~l~~~~~e~i~-----~~c~~c~~~~~~~ 386 (577)
..+++.+.|.|+..++++|..|++ .++++.+|..|.++++.-+ -.|.+|++.|.+++.. -+|++|++....+
T Consensus 220 n~S~v~~~f~gq~~srlqC~~C~~--TStT~a~fs~l~vp~~~v~~~~l~eC~~~f~~~e~L~g~d~W~CpkC~~k~ss~ 297 (415)
T COG5533 220 NKSLVAKTFFGQDKSRLQCEACNY--TSTTIAMFSTLLVPPYEVVQLGLQECIDRFYEEEKLEGKDAWRCPKCGRKESSR 297 (415)
T ss_pred chHHHHHHHhhhhhhhhhhhhcCC--ceeEEeccceeeeccchheeecHHHHHHHhhhHHhhcCcccccCchhcccccch
Confidence 458899999999999999999999 4788999999999986421 2489999999987654 2799999999999
Q ss_pred EEEEeccCCCceEEEEEEEEEeccccccccccccccCCccccccccCCHHHHhccccchHHHHHHHHHHHHHHHhhhhcc
Q psy7711 387 KTSKVSRLPAYLTIQFVRFFYKEKERINAKVLKDIKFPIEFDAYELCTPELQAKLAPMREKFKIAEEKEAFEEFRTQYVF 466 (577)
Q Consensus 387 k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 466 (577)
|+..|.++|++|+|||+||... |..|..||..++-....-.
T Consensus 298 K~~~I~~lP~~LII~i~RF~i~------------V~~~~kiD~p~gw~~~~~~--------------------------- 338 (415)
T COG5533 298 KRMEILVLPDVLIIHISRFHIS------------VMGRKKIDTPQGWKNTASV--------------------------- 338 (415)
T ss_pred heEEEEecCceEEEEeeeeeEE------------eecccccCCCcchhccCCc---------------------------
Confidence 9999999999999999999732 3344455554332111000
Q ss_pred cCCCchhhhhhhcccccCCccccccccccccchhcccCCCCCCCCCCCCCCCceeEEEeEEEEeecCCCCCCceEEEEEC
Q psy7711 467 ISIPMDEIYVRFGQKIYAPVGDRIQDFGVKSTEFQSRGQGSSPGRVDIGSNNSGYYTLQAVLTHKGRTSSSGHYVAWVKK 546 (577)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~~GHY~a~vr~ 546 (577)
+. +..+ .|.+ -..-...+|+|.|||+|.|. .++|||+++|+.
T Consensus 339 --e~-----------~v~~-------------~f~~-----------~~~~~P~~Y~L~gv~Ch~G~-L~gGHY~s~v~~ 380 (415)
T COG5533 339 --EV-----------NVTL-------------LFNN-----------GIGYIPRKYSLLGVVCHNGT-LNGGHYFSEVKR 380 (415)
T ss_pred --ee-----------cccc-------------cccC-----------CCCCCccceeEEEEEeecce-ecCceeEEeeee
Confidence 00 0000 0000 01112358999999999995 999999999999
Q ss_pred CCCcEEEEeCCcceecChh
Q psy7711 547 PNGTWIKCDDDKVYPISEE 565 (577)
Q Consensus 547 ~~~~W~~~nD~~V~~v~~~ 565 (577)
++.|+.|||+.|+.++..
T Consensus 381 -~~~W~~~dDs~vr~~~~~ 398 (415)
T COG5533 381 -SGTWNVYDDSQVRKGSRT 398 (415)
T ss_pred -cCceEEechhheeeccce
Confidence 799999999999998643
No 20
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.6e-47 Score=385.54 Aligned_cols=317 Identities=24% Similarity=0.360 Sum_probs=261.8
Q ss_pred hHHHHHHHHHhhhcccCCCCCCCCchhhhccc--ccccccCCCCCchhHHHHHHHhhccHHHHHHHHhhcCCCCCCCCCh
Q psy7711 156 QSITASLRDLYECMDNMKISPSISPFIMLQGR--YLPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPA 233 (577)
Q Consensus 156 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~ 233 (577)
-.++..+|-+.++++.. |++|..+++. .|.+||+|.|.||||||+||+|+.+..||+.+..+++... ...
T Consensus 162 l~ItvyVRvlkdPTGVL-----WHsF~nYnSKkeTGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy~ipTd~p---~gr 233 (1089)
T COG5077 162 LVITVYVRVLKDPTGVL-----WHSFLNYNSKKETGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPTDHP---RGR 233 (1089)
T ss_pred EEEEEEEEEEeCCccce-----eecccccccccceeeeeeccCCceeeHHHHHHHHHHHHHHHHHhhcCCCCCC---Ccc
Confidence 34444555555554433 6777777774 6889999999999999999999999999999998886543 344
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHhhCCccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCCCc
Q psy7711 234 QSITASLRDLYECMDNMKISPSISPFIMLQVLHNVFPRFADKTDDGSYMQQDANECWTEMVRMLKTALPGENEEGQDSAK 313 (577)
Q Consensus 234 ~~l~~~L~~Lf~~l~~~~~~~~i~P~~~~~~l~~~~~~f~~~~~~~~~~QqDA~Efl~~ll~~L~~~~~~~~~~~~~~~~ 313 (577)
..+..+||++|..|+.+ ..+++..+|.... .|.+. ..++|+|.+||-..|.|.|+...... ..
T Consensus 234 dSValaLQr~Fynlq~~--~~PvdTteltrsf-------gWds~-dsf~QHDiqEfnrVl~DnLEksmrgt-------~V 296 (1089)
T COG5077 234 DSVALALQRLFYNLQTG--EEPVDTTELTRSF-------GWDSD-DSFMQHDIQEFNRVLQDNLEKSMRGT-------VV 296 (1089)
T ss_pred chHHHHHHHHHHHHhcc--CCCcchHHhhhhc-------Ccccc-hHHHHHhHHHHHHHHHHHHHHhhcCC-------hh
Confidence 57889999999999998 6788887776543 33322 26799999999999999999976553 34
Q ss_pred cchhhhccceEEeEEEEcCCCCCCCCCcccccceeeeeccCCCccchhHHHhhhhhhhhh-----ccCcCCCCCceEEEE
Q psy7711 314 SSFIEQYFYTIMDTELKCSESETEPPTKGTESFQQLSCYITTDVKYMLPGLKNKLQDQIT-----KRSPSLDRDAVYVKT 388 (577)
Q Consensus 314 ~~~i~~lF~g~~~~~~~C~~c~~~~~s~~~e~f~~L~l~i~~~~~~l~~~l~~~~~e~i~-----~~c~~c~~~~~~~k~ 388 (577)
...+..+|-|++.+.+.|..-..+ +.+.|.||++.+++. ...+|+++++.|.+-++. ++|+.-| -..|.|-
T Consensus 297 Enaln~ifVgkmksyikCvnvnyE--sarvedfwdiqlNvK-~~knLqeSfr~yIqvE~l~GdN~Y~ae~~G-lqdAkKG 372 (1089)
T COG5077 297 ENALNGIFVGKMKSYIKCVNVNYE--SARVEDFWDIQLNVK-GMKNLQESFRRYIQVETLDGDNRYNAEKHG-LQDAKKG 372 (1089)
T ss_pred hhHHhHHHHHHhhceeeEEEechh--hhhHHHHHHHHhccc-chhhHHHHHHHhhhheeccCCccccccccc-chhhccc
Confidence 567899999999999999999887 567899999999984 667899999999985544 3454443 3457899
Q ss_pred EEeccCCCceEEEEEEEEEeccccccccccccccCCccccccccCCHHHHhccccchHHHHHHHHHHHHHHHhhhhcccC
Q psy7711 389 SKVSRLPAYLTIQFVRFFYKEKERINAKVLKDIKFPIEFDAYELCTPELQAKLAPMREKFKIAEEKEAFEEFRTQYVFIS 468 (577)
Q Consensus 389 ~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 468 (577)
..|.+||++|.+|||||.||-..+...||+++.+||+++||.+|.+++..+
T Consensus 373 ViFeSlPpVlhlqLKRFeyDfe~d~mvKINDryEFP~eiDl~pfld~da~k----------------------------- 423 (1089)
T COG5077 373 VIFESLPPVLHLQLKRFEYDFERDMMVKINDRYEFPLEIDLLPFLDRDADK----------------------------- 423 (1089)
T ss_pred eeeccCchHHHHHHHHhccccccCceeeecccccCcchhccccccCchhhh-----------------------------
Confidence 999999999999999999999999999999999999999999998765411
Q ss_pred CCchhhhhhhcccccCCccccccccccccchhcccCCCCCCCCCCCCCCCceeEEEeEEEEeecCCCCCCceEEEEECC-
Q psy7711 469 IPMDEIYVRFGQKIYAPVGDRIQDFGVKSTEFQSRGQGSSPGRVDIGSNNSGYYTLQAVLTHKGRTSSSGHYVAWVKKP- 547 (577)
Q Consensus 469 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~~GHY~a~vr~~- 547 (577)
..+..+.|.|+||++|.|. .+.|||+|++|..
T Consensus 424 ----------------------------------------------sen~d~vY~LygVlVHsGD-l~~GHyYallKpe~ 456 (1089)
T COG5077 424 ----------------------------------------------SENSDAVYVLYGVLVHSGD-LHEGHYYALLKPEK 456 (1089)
T ss_pred ----------------------------------------------hcccCcEEEEEEEEEeccc-cCCceEEEEecccc
Confidence 1223468999999999996 9999999999964
Q ss_pred CCcEEEEeCCcceecChhhhhccCCCCCCC
Q psy7711 548 NGTWIKCDDDKVYPISEEEVLKLSGGGKVI 577 (577)
Q Consensus 548 ~~~W~~~nD~~V~~v~~~~V~~~~~Gg~~~ 577 (577)
+|.||+|||++|+++.+.+|+..++|||++
T Consensus 457 dg~WykfdDtrVtrat~kevleeNfGgd~~ 486 (1089)
T COG5077 457 DGRWYKFDDTRVTRATEKEVLEENFGGDHP 486 (1089)
T ss_pred CCCceeecceehhhHHHHHHHHHhcCCCCC
Confidence 899999999999999999999999999975
No 21
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.7e-44 Score=337.58 Aligned_cols=193 Identities=25% Similarity=0.324 Sum_probs=160.6
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCC-CCCCCccchhhhccceEEeEEEEcCCCCCCCCCcccccceeeeeccCCCccch
Q psy7711 282 MQQDANECWTEMVRMLKTALPGENEE-GQDSAKSSFIEQYFYTIMDTELKCSESETEPPTKGTESFQQLSCYITTDVKYM 360 (577)
Q Consensus 282 ~QqDA~Efl~~ll~~L~~~~~~~~~~-~~~~~~~~~i~~lF~g~~~~~~~C~~c~~~~~s~~~e~f~~L~l~i~~~~~~l 360 (577)
.||||+||+..||+.|++.+...... .......++|.++|+|++.++..| |+.. +.+.|+|++|+|+|.. ..+|
T Consensus 21 ~QQDa~Ef~~~Lld~Le~~l~~~~~~~~~~~~~~~~i~~lF~G~~~~~~~~--~~~~--s~~~E~F~~L~l~i~~-~~~L 95 (228)
T cd02665 21 QQQDVSEFTHLLLDWLEDAFQAAAEAISPGEKSKNPMVQLFYGTFLTEGVL--EGKP--FCNCETFGQYPLQVNG-YGNL 95 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccccccchHhhceEEEEEEEEEE--CCCc--ccccCccEEEEEEECC-CCCH
Confidence 58999999999999999998754321 111245678999999999987777 5543 6789999999999964 4899
Q ss_pred hHHHhhhhhh-hhhccCcCCCCCceEEEEEEeccCCCceEEEEEEEEEeccccccccccccccCCccccccccCCHHHHh
Q psy7711 361 LPGLKNKLQD-QITKRSPSLDRDAVYVKTSKVSRLPAYLTIQFVRFFYKEKERINAKVLKDIKFPIEFDAYELCTPELQA 439 (577)
Q Consensus 361 ~~~l~~~~~e-~i~~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~ 439 (577)
++||+.++.+ ++.+ ..|++.+.+.++..|.+||++|+|||+||.|+. +...|++++|.||.+|.
T Consensus 96 ~e~L~~~~~ee~l~~--~~~~~~~~~~~~~~i~~lP~vL~i~LkRF~~~~--~~~~Ki~~~v~FP~~l~----------- 160 (228)
T cd02665 96 HECLEAAMFEGEVEL--LPSDHSVKSGQERWFTELPPVLTFELSRFEFNQ--GRPEKIHDKLEFPQIIQ----------- 160 (228)
T ss_pred HHHHHHhhhhccccc--ccccchhhhhhhhhhhhCChhhEEEeEeeEEcC--CccEECCEEEEeeCccC-----------
Confidence 9999998875 5544 334455667788899999999999999999987 56899999999998862
Q ss_pred ccccchHHHHHHHHHHHHHHHhhhhcccCCCchhhhhhhcccccCCccccccccccccchhcccCCCCCCCCCCCCCCCc
Q psy7711 440 KLAPMREKFKIAEEKEAFEEFRTQYVFISIPMDEIYVRFGQKIYAPVGDRIQDFGVKSTEFQSRGQGSSPGRVDIGSNNS 519 (577)
Q Consensus 440 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (577)
.
T Consensus 161 -------------------------------------------------------------------------------~ 161 (228)
T cd02665 161 -------------------------------------------------------------------------------Q 161 (228)
T ss_pred -------------------------------------------------------------------------------C
Confidence 1
Q ss_pred eeEEEeEEEEeecCCCCCCceEEEEECC-CCcEEEEeCCcceecChhhhhccCCCC
Q psy7711 520 GYYTLQAVLTHKGRTSSSGHYVAWVKKP-NGTWIKCDDDKVYPISEEEVLKLSGGG 574 (577)
Q Consensus 520 ~~Y~L~aVI~H~G~s~~~GHY~a~vr~~-~~~W~~~nD~~V~~v~~~~V~~~~~Gg 574 (577)
..|+|+|||+|.|. +++|||+||+|+. +++||+|||+.|+++++++|++.++||
T Consensus 162 ~~Y~L~aVi~H~G~-~~~GHY~~~i~~~~~~~W~~fdD~~V~~~~~~~v~~~~fGg 216 (228)
T cd02665 162 VPYELHAVLVHEGQ-ANAGHYWAYIYKQSRQEWEKYNDISVTESSWEEVERDSFGG 216 (228)
T ss_pred ceeEEEEEEEecCC-CCCCEEEEEEEcCCCCEEEEEECCeeEEcCHHHHhhhccCC
Confidence 26999999999997 8999999999864 889999999999999999999987554
No 22
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=100.00 E-value=1.9e-43 Score=350.50 Aligned_cols=251 Identities=31% Similarity=0.534 Sum_probs=201.2
Q ss_pred ccccCCCCCchhHHHHHHHhhccHHHHHHHHhhc----CCCCCCCCChhhHHHHHHHHHHHHhcC-CCCCCCChHHHHHH
Q psy7711 190 PAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLK----GGLQPGSNPAQSITASLRDLYECMDNM-KISPSISPFIMLQV 264 (577)
Q Consensus 190 ~~GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~----~~~~~~~~~~~~l~~~L~~Lf~~l~~~-~~~~~i~P~~~~~~ 264 (577)
|+||.|.||||||||+||+|+++|+|++++++.. ...........++.++|+.||..|+.. .....+.|..|+.+
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~ 80 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDFINA 80 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHHHHH
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeecccccc
Confidence 5899999999999999999999999999998751 011112334457999999999999987 22568899999999
Q ss_pred HHhhCCccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC----CCCCCCccchhhhccceEEeEEEEcCCCCCCCCC
Q psy7711 265 LHNVFPRFADKTDDGSYMQQDANECWTEMVRMLKTALPGENE----EGQDSAKSSFIEQYFYTIMDTELKCSESETEPPT 340 (577)
Q Consensus 265 l~~~~~~f~~~~~~~~~~QqDA~Efl~~ll~~L~~~~~~~~~----~~~~~~~~~~i~~lF~g~~~~~~~C~~c~~~~~s 340 (577)
+....+.|. .+.||||+|||..||+.|++++..... ........+++.++|++.+...+.|..|+..
T Consensus 81 l~~~~~~~~------~~~qqDa~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~c~~c~~~--- 151 (269)
T PF00443_consen 81 LSSINPSFS------NGEQQDAHEFLSFLLDWLDEEFNSSFKRKSWKNTNSSEDSLISDLFGGQFESSIKCSSCKNS--- 151 (269)
T ss_dssp HHHHCGGGG------SSSTEEHHHHHHHHHHHHHHHHTSCSSHHHHHHHHCCEESHHHHHH-EEEEEEEEETTTTCE---
T ss_pred ccccccccc------cccccchhhhhcccccccchhhcccccccccccccccccccccccccccccccccccccccc---
Confidence 999999988 889999999999999999999776432 1112345778899999999999999999873
Q ss_pred cccccceeeeeccCCCccchhHHHhhhhhhhhhccCcCCCCCceEEEEEEeccCCCceEEEEEEEEEecccccccccccc
Q psy7711 341 KGTESFQQLSCYITTDVKYMLPGLKNKLQDQITKRSPSLDRDAVYVKTSKVSRLPAYLTIQFVRFFYKEKERINAKVLKD 420 (577)
Q Consensus 341 ~~~e~f~~L~l~i~~~~~~l~~~l~~~~~e~i~~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~ 420 (577)
...|.++|++|+|+|+||.|+...+...|+..+
T Consensus 152 -----------------------------------------------~~~~~~~P~~L~i~l~R~~~~~~~~~~~K~~~~ 184 (269)
T PF00443_consen 152 -----------------------------------------------QSSISSLPPILIIQLKRFEFDQETGRSKKINNP 184 (269)
T ss_dssp -----------------------------------------------EEEEEEBBSEEEEEEE-EEEESTSSEEEE--CE
T ss_pred -----------------------------------------------ccccccccceeeeccccceeccccccccccccc
Confidence 678999999999999999999987789999999
Q ss_pred ccCC-ccccccccCCHHHHhccccchHHHHHHHHHHHHHHHhhhhcccCCCchhhhhhhcccccCCccccccccccccch
Q psy7711 421 IKFP-IEFDAYELCTPELQAKLAPMREKFKIAEEKEAFEEFRTQYVFISIPMDEIYVRFGQKIYAPVGDRIQDFGVKSTE 499 (577)
Q Consensus 421 V~fp-~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 499 (577)
|.|| .+|||.+++....
T Consensus 185 v~~~~~~l~l~~~~~~~~-------------------------------------------------------------- 202 (269)
T PF00443_consen 185 VEFPLEELDLSPYLEKNN-------------------------------------------------------------- 202 (269)
T ss_dssp EB--SSEEEGGGGBSSCC--------------------------------------------------------------
T ss_pred cccCchhhhhhhhhcccc--------------------------------------------------------------
Confidence 9999 6999987653221
Q ss_pred hcccCCCCCCCCCCCCCCCceeEEEeEEEEeecCCCCCCceEEEEECCC-CcEEEEeCCcceecChhhhhccCCC
Q psy7711 500 FQSRGQGSSPGRVDIGSNNSGYYTLQAVLTHKGRTSSSGHYVAWVKKPN-GTWIKCDDDKVYPISEEEVLKLSGG 573 (577)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~~GHY~a~vr~~~-~~W~~~nD~~V~~v~~~~V~~~~~G 573 (577)
........|+|+|||+|.| +.++|||+||+|+.+ ++|++|||++|+++++++|.+.+..
T Consensus 203 --------------~~~~~~~~Y~L~avi~H~G-~~~~GHY~a~v~~~~~~~W~~~dD~~v~~~~~~~v~~~~~~ 262 (269)
T PF00443_consen 203 --------------SECQSNVKYRLVAVIVHYG-SADSGHYVAYVRDSDDGKWYKFDDSRVTEVSWEEVIKSSNS 262 (269)
T ss_dssp --------------CTHTSSSEEEEEEEEEEES-STTSEEEEEEEEETTTTEEEEEETTEEEEESHHHHCCGGST
T ss_pred --------------ccccccceeeehhhhcccc-ccccceEEEeeccccCCeEEEeeCCceEECCHHHHhhccCC
Confidence 0001245899999999999 799999999999864 4799999999999999999885533
No 23
>KOG1868|consensus
Probab=100.00 E-value=1.9e-42 Score=365.32 Aligned_cols=297 Identities=28% Similarity=0.344 Sum_probs=236.7
Q ss_pred hhhcccccccccCCCCCchhHHHHHHHhhccHHHHHHHHhhcCCCC---CCCCChhhHHHHHHHHHHHHhcCCCCCCCCh
Q psy7711 182 IMLQGRYLPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQ---PGSNPAQSITASLRDLYECMDNMKISPSISP 258 (577)
Q Consensus 182 ~~~~~~~~~~GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~~~~---~~~~~~~~l~~~L~~Lf~~l~~~~~~~~i~P 258 (577)
.......+.+||.|+|||||||++||||+.++.||..++....... ........+..+...++..++......++.|
T Consensus 293 ~~~~~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~~~~~~s~~P 372 (653)
T KOG1868|consen 293 SASTDVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWHGHGQFSVLP 372 (653)
T ss_pred cccccccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhccCCCceecCc
Confidence 3444567889999999999999999999999999966654321110 1223345677888888888877755678899
Q ss_pred HHHHHHHHhhCCccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC--------------------C--------CCC
Q psy7711 259 FIMLQVLHNVFPRFADKTDDGSYMQQDANECWTEMVRMLKTALPGENE--------------------E--------GQD 310 (577)
Q Consensus 259 ~~~~~~l~~~~~~f~~~~~~~~~~QqDA~Efl~~ll~~L~~~~~~~~~--------------------~--------~~~ 310 (577)
..|+..+.+..+.|. ++.||||+||+..+++.||++++.... . ...
T Consensus 373 ~~f~~~~~~y~~~~~------~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~ 446 (653)
T KOG1868|consen 373 RRFIRVLKRYSPNFS------GYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYL 446 (653)
T ss_pred HHHHHHHhhcccccc------cccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhc
Confidence 999999999999998 689999999999999999999877421 0 011
Q ss_pred CCccchhhhccceEEeEEEEcCCCCCCCCCcccccceeeeeccCCCccc-----hhHHHhhhhhhhhh-----ccCcCCC
Q psy7711 311 SAKSSFIEQYFYTIMDTELKCSESETEPPTKGTESFQQLSCYITTDVKY-----MLPGLKNKLQDQIT-----KRSPSLD 380 (577)
Q Consensus 311 ~~~~~~i~~lF~g~~~~~~~C~~c~~~~~s~~~e~f~~L~l~i~~~~~~-----l~~~l~~~~~e~i~-----~~c~~c~ 380 (577)
....+.|.++|.|++.+.++|..|+.. +.+++.|..++|+|+..... |.+|+..|+.++-. ..|+.|+
T Consensus 447 ~~~d~~i~~lf~gQ~ks~Lkc~~cg~~--s~t~~~f~~lslpIp~~~~~~~~~~L~~C~~~ft~~ekle~~~~w~Cp~c~ 524 (653)
T KOG1868|consen 447 EEEDSKIGDLFVGQLKSYLKCQACGYT--STTFETFTDLSLPIPKKGFAGGKVSLEDCLSLFTKEEKLEGDEAWLCPRCK 524 (653)
T ss_pred cccchHHHHHHHHHHHhheehhhcCCc--ceeeecceeeEEecccccccccccchHhhhccccchhhcccccccCCcccc
Confidence 234455899999999999999999995 68889999999999864433 89999999985443 3699999
Q ss_pred CCceEE--EEEEeccCCCceEEEEEEEEEeccccccccccccccCCcc-ccccccCCHHHHhccccchHHHHHHHHHHHH
Q psy7711 381 RDAVYV--KTSKVSRLPAYLTIQFVRFFYKEKERINAKVLKDIKFPIE-FDAYELCTPELQAKLAPMREKFKIAEEKEAF 457 (577)
Q Consensus 381 ~~~~~~--k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~V~fp~~-Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 457 (577)
...... |+..|.+||++|++||+||.++. +...|...-|+||.. .++.++.
T Consensus 525 ~~~~~~~lK~~~i~~lp~iLiihL~Rf~~~~--~~~~k~~~~v~~~~~~~~~~~~~------------------------ 578 (653)
T KOG1868|consen 525 HKESSKTLKKLTILRLPKILIIHLKRFSSDG--NSFNKLSTGVDFPLREADLSPRF------------------------ 578 (653)
T ss_pred CcccccccceeeeecCCHHHHHHHHHhccCc--ccccccceeeccchHhhhhchhc------------------------
Confidence 998885 99999999999999999999996 457888888999874 4432110
Q ss_pred HHHhhhhcccCCCchhhhhhhcccccCCccccccccccccchhcccCCCCCCCCCCCCCCCceeEEEeEEEEeecCCCCC
Q psy7711 458 EEFRTQYVFISIPMDEIYVRFGQKIYAPVGDRIQDFGVKSTEFQSRGQGSSPGRVDIGSNNSGYYTLQAVLTHKGRTSSS 537 (577)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~~ 537 (577)
. ...+....|+|+|||+|.| +.++
T Consensus 579 -------------------------~------------------------------~~~~~~~~Y~L~aVv~H~G-tl~s 602 (653)
T KOG1868|consen 579 -------------------------A------------------------------EKGNNPKSYRLYAVVNHSG-TLNS 602 (653)
T ss_pred -------------------------c------------------------------ccCCCccceeeEEEEeccC-cccC
Confidence 0 0112234699999999999 6999
Q ss_pred CceEEEEECC-CCcEEEEeCCcceecChhhhh
Q psy7711 538 GHYVAWVKKP-NGTWIKCDDDKVYPISEEEVL 568 (577)
Q Consensus 538 GHY~a~vr~~-~~~W~~~nD~~V~~v~~~~V~ 568 (577)
|||+||++.. .+.|+.|||+.|+.++..+|.
T Consensus 603 GHYta~~~~~~~~~W~~fdDs~Vs~~~~~~~~ 634 (653)
T KOG1868|consen 603 GHYTAYVYKNEKQRWFTFDDSEVSPISETDVG 634 (653)
T ss_pred CceEEEEeecCCCceEEecCeeeecccccccc
Confidence 9999999874 688999999999999888876
No 24
>KOG1867|consensus
Probab=100.00 E-value=1.9e-41 Score=352.33 Aligned_cols=372 Identities=22% Similarity=0.326 Sum_probs=277.0
Q ss_pred CCcccccCCCCcchhhHHHhhcCCHHHH---------HHHHhhhCCCCCCCCchhHHHHHHHHHhh-hcccCCCCCCCCc
Q psy7711 111 LPAGLNNLGNTCYMNAVIQCLKTVPELR---------KALKNLKGGLQPGSNPAQSITASLRDLYE-CMDNMKISPSISP 180 (577)
Q Consensus 111 ~~~gl~n~g~~cy~ns~~q~l~~~p~l~---------~~~~~~~~~~~~~~~p~~~~~~~l~~l~~-~~~~~~~~~~~~~ 180 (577)
...+..+.+++|++|...+-+++++.+. .....+ ..+....+..-.......+.. .......+. ..
T Consensus 76 ~~~~~~~~~~~~~~~~g~~~~~~c~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~--~~ 151 (492)
T KOG1867|consen 76 EHSGNKKHNNTIDVNNGLLYCFACPDFIYDAELLKLADIKKYK--EQPFHQLDSTLLTHLAEATVCQQTLLKENPK--DR 151 (492)
T ss_pred cccccccccccceeehhhheeccCCcEeeccchhhHHHHHhhh--ccchhhccchhhhhhhhhhccchhcccCCcc--cc
Confidence 6678899999999999888888876542 111111 001100000000001111111 111111110 00
Q ss_pred hhhhcccccccccCCCCCchhHHHHHHHhhccHHHHHHHHhhcCCCCCCCCChhhHHHHHHHHHHHHhcCCCCCCCChHH
Q psy7711 181 FIMLQGRYLPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDNMKISPSISPFI 260 (577)
Q Consensus 181 ~~~~~~~~~~~GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~l~~~L~~Lf~~l~~~~~~~~i~P~~ 260 (577)
......+.+.+||.|+||||+||++||+|.+.+..+...+..............++.+.+.++|..++++.....+.|..
T Consensus 152 ~~~~~~~~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~~~~~~~~~l~~~~~~~~~~~~s~~~~~~~sp~~ 231 (492)
T KOG1867|consen 152 LVLSTTALGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSKEPSSSGSSCLVCDLDRLFQALYSGHNRTPYSPFE 231 (492)
T ss_pred cccceeeecccccccccHHHHHHHHHHHhhccchhhccchhhhcccCCCCCCCcchhhhhhhhhhHhhcCCCCCCcChHH
Confidence 11222345679999999999999999999999988888776555433233336799999999999999985467899999
Q ss_pred HHHHHHhhCCccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----CCCCCccchhhhccceEEeEEEEcCCCCC
Q psy7711 261 MLQVLHNVFPRFADKTDDGSYMQQDANECWTEMVRMLKTALPGENEE----GQDSAKSSFIEQYFYTIMDTELKCSESET 336 (577)
Q Consensus 261 ~~~~l~~~~~~f~~~~~~~~~~QqDA~Efl~~ll~~L~~~~~~~~~~----~~~~~~~~~i~~lF~g~~~~~~~C~~c~~ 336 (577)
++..+++..|.+. ++.||||+||+..+++.++.+....... .......+++...|.|.+...++|..|+.
T Consensus 232 ~l~~~~k~~~~~~------g~~Qqda~eF~~~~~~~~~~~~~~~~k~~~~~~~~~~c~~iv~~~F~G~L~~~v~c~~c~~ 305 (492)
T KOG1867|consen 232 LLNLVWKHSPNLA------GYEQQDAHEFLIALLDRLHREKDDCGKSLIASQSNKQCPCIVHTIFSGTLQSDVTCQTCGS 305 (492)
T ss_pred HHHHHHHhCcccc------cccccchHHHHHHhcccccccccccccccccccCCcccccccceeecceeccceeehhhcc
Confidence 9999999999998 7999999999999999999988111110 11124578899999999999999999999
Q ss_pred CCCCcccccceeeeeccCCCc---------cchhHHHhhhhhh-----hhhccCcCCCCCceEEEEEEeccCCCceEEEE
Q psy7711 337 EPPTKGTESFQQLSCYITTDV---------KYMLPGLKNKLQD-----QITKRSPSLDRDAVYVKTSKVSRLPAYLTIQF 402 (577)
Q Consensus 337 ~~~s~~~e~f~~L~l~i~~~~---------~~l~~~l~~~~~e-----~i~~~c~~c~~~~~~~k~~~i~~lP~~L~i~l 402 (577)
. +.+.++|++|+|+|+... ..+.+++..+..- .....|..|+......|+..|.++|.+|.+|+
T Consensus 306 ~--S~~~dpf~disL~i~~~~~~~~~~~~~~~~~~cl~~~~~~~~~~~~~~~~c~~c~~~~~~~kql~~~~lP~~l~~~l 383 (492)
T KOG1867|consen 306 K--STTYDPFMDISLDIPDQFTSSSVRSPELTLLDCLDRFTRSEQLGKDSKYKCSSCKSKQESTKQLTIRKLPAVLCLHL 383 (492)
T ss_pred e--eeeccCccceeeecchhccCcccccchhhhhhhhhhhhhhhhcCcccccccCCcccccccccccccccCCceeeeee
Confidence 6 488999999999997432 3466777665542 22347999999999999999999999999999
Q ss_pred EEEEEeccccccccccccccCCccccccccCCHHHHhccccchHHHHHHHHHHHHHHHhhhhcccCCCchhhhhhhcccc
Q psy7711 403 VRFFYKEKERINAKVLKDIKFPIEFDAYELCTPELQAKLAPMREKFKIAEEKEAFEEFRTQYVFISIPMDEIYVRFGQKI 482 (577)
Q Consensus 403 ~Rf~~~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (577)
+||.|....... |+...|.||..|+|.+||..+..
T Consensus 384 kRfe~~~~~~~~-ki~~~v~fp~~l~m~p~~~~~~~-------------------------------------------- 418 (492)
T KOG1867|consen 384 KRFEHSATGARE-KIDSYVSFPVLLNMKPYCSSEKL-------------------------------------------- 418 (492)
T ss_pred cccccccccccc-ccCcccccchhhcCCcccccccc--------------------------------------------
Confidence 999999865544 99999999999999999875310
Q ss_pred cCCccccccccccccchhcccCCCCCCCCCCCCCCCceeEEEeEEEEeecCCCCCCceEEEEECCCCcEEEEeCCcceec
Q psy7711 483 YAPVGDRIQDFGVKSTEFQSRGQGSSPGRVDIGSNNSGYYTLQAVLTHKGRTSSSGHYVAWVKKPNGTWIKCDDDKVYPI 562 (577)
Q Consensus 483 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~~GHY~a~vr~~~~~W~~~nD~~V~~v 562 (577)
+ ...+.+..|+|.|||+|+|. .++|||+||.|. .+.||+|||+.|+.+
T Consensus 419 --~----------------------------~~~~~~~~Y~L~AVV~H~G~-~~SGHY~aY~r~-~~~~~~~dDs~v~~~ 466 (492)
T KOG1867|consen 419 --K----------------------------SQDNPDHLYELRAVVVHHGT-VGSGHYVAYRRQ-SGGWFKCDDSTVTKV 466 (492)
T ss_pred --c----------------------------cCCCCCceEEEEEEEEeccC-CCCCceEEEEEe-CCCcEEEcCeEEEEe
Confidence 0 00134568999999999997 999999999999 889999999999999
Q ss_pred ChhhhhccC
Q psy7711 563 SEEEVLKLS 571 (577)
Q Consensus 563 ~~~~V~~~~ 571 (577)
++++|++..
T Consensus 467 s~~eVl~~~ 475 (492)
T KOG1867|consen 467 SEEEVLSSQ 475 (492)
T ss_pred eHHHhhhch
Confidence 999998753
No 25
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.4e-41 Score=324.55 Aligned_cols=187 Identities=27% Similarity=0.402 Sum_probs=161.9
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCCCCCccchhhhccceEEeEEEEcCCCCCCCCCcccccceeeeeccCCCc----
Q psy7711 282 MQQDANECWTEMVRMLKTALPGENEEGQDSAKSSFIEQYFYTIMDTELKCSESETEPPTKGTESFQQLSCYITTDV---- 357 (577)
Q Consensus 282 ~QqDA~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~i~~lF~g~~~~~~~C~~c~~~~~s~~~e~f~~L~l~i~~~~---- 357 (577)
.||||+||+..||+.|+ +.+.++|+|++..+++|..|+.. +.+.|+|+.|+++++...
T Consensus 21 ~QqDa~Ef~~~ll~~l~----------------~~i~~~F~~~~~~~~~C~~C~~~--~~~~e~~~~l~l~ip~~~~~~~ 82 (230)
T cd02674 21 DQQDAQEFLLFLLDGLH----------------SIIVDLFQGQLKSRLTCLTCGKT--STTFEPFTYLSLPIPSGSGDAP 82 (230)
T ss_pred hhhhHHHHHHHHHHHHh----------------hhHHheeCCEEeCcEEcCCCcCC--cceecceeEEEEecccccCCCC
Confidence 58999999999999998 25899999999999999999985 567899999999998643
Q ss_pred -cchhHHHhhhhhhh-h----hccCcCCCCCceEEEEEEeccCCCceEEEEEEEEEeccccccccccccccCCc-ccccc
Q psy7711 358 -KYMLPGLKNKLQDQ-I----TKRSPSLDRDAVYVKTSKVSRLPAYLTIQFVRFFYKEKERINAKVLKDIKFPI-EFDAY 430 (577)
Q Consensus 358 -~~l~~~l~~~~~e~-i----~~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~V~fp~-~Ldl~ 430 (577)
.+|.++|+.++..+ + ...|++|++...+.++..|.++|++|+|||+||.++. +...|+..+|.||. .||+.
T Consensus 83 ~~sl~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~~--~~~~K~~~~v~~~~~~l~l~ 160 (230)
T cd02674 83 KVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSR--GSTRKLTTPVTFPLNDLDLT 160 (230)
T ss_pred CCCHHHHHHHhcCccccCCCCceeCCCCCCccceEEEEEEecCChhhEeEhhheecCC--CCcccCCceEeccccccccc
Confidence 48999999998854 3 2579999999999999999999999999999999987 56899999999996 58887
Q ss_pred ccCCHHHHhccccchHHHHHHHHHHHHHHHhhhhcccCCCchhhhhhhcccccCCccccccccccccchhcccCCCCCCC
Q psy7711 431 ELCTPELQAKLAPMREKFKIAEEKEAFEEFRTQYVFISIPMDEIYVRFGQKIYAPVGDRIQDFGVKSTEFQSRGQGSSPG 510 (577)
Q Consensus 431 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (577)
+|+...
T Consensus 161 ~~~~~~-------------------------------------------------------------------------- 166 (230)
T cd02674 161 PYVDTR-------------------------------------------------------------------------- 166 (230)
T ss_pred cccCcc--------------------------------------------------------------------------
Confidence 664110
Q ss_pred CCCCCCCCceeEEEeEEEEeecCCCCCCceEEEEECCC-CcEEEEeCCcceecChhhh
Q psy7711 511 RVDIGSNNSGYYTLQAVLTHKGRTSSSGHYVAWVKKPN-GTWIKCDDDKVYPISEEEV 567 (577)
Q Consensus 511 ~~~~~~~~~~~Y~L~aVI~H~G~s~~~GHY~a~vr~~~-~~W~~~nD~~V~~v~~~~V 567 (577)
......+|+|+|||+|.|.. ++|||+||+|..+ +.|++|||+.|+++++++|
T Consensus 167 ----~~~~~~~Y~L~~vI~H~G~~-~~GHY~~~~~~~~~~~W~~fnD~~V~~i~~~~~ 219 (230)
T cd02674 167 ----SFTGPFKYDLYAVVNHYGSL-NGGHYTAYCKNNETNDWYKFDDSRVTKVSESSV 219 (230)
T ss_pred ----cCCCCceEEEEEEEEeeCCC-CCcEEEEEEECCCCCceEEEcCCeEEEcCHHHc
Confidence 01124589999999999975 9999999999964 8999999999999999997
No 26
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=9.5e-41 Score=321.94 Aligned_cols=226 Identities=22% Similarity=0.344 Sum_probs=172.1
Q ss_pred cCCCCCchhHHHHHHHhhccHHHHHHHHhhcCCCCCCCCChhhHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHhhCCcc
Q psy7711 193 LNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDNMKISPSISPFIMLQVLHNVFPRF 272 (577)
Q Consensus 193 L~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~l~~~L~~Lf~~l~~~~~~~~i~P~~~~~~l~~~~~~f 272 (577)
|.|.||+||+||.+|+|.+ +++..|.|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~-----------------------------------------------------i~~~~~~F 28 (245)
T cd02673 2 LVNTGNSCYFNSTMQALSS-----------------------------------------------------IGKINTEF 28 (245)
T ss_pred ceecCCeeeehhHHHHHHH-----------------------------------------------------Hhhhhhhc
Confidence 7899999999999999943 33344678
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC---CCCccchhhhccceEEeEEEEcCCCCCCCCCcccccceee
Q psy7711 273 ADKTDDGSYMQQDANECWTEMVRMLKTALPGENEEGQ---DSAKSSFIEQYFYTIMDTELKCSESETEPPTKGTESFQQL 349 (577)
Q Consensus 273 ~~~~~~~~~~QqDA~Efl~~ll~~L~~~~~~~~~~~~---~~~~~~~i~~lF~g~~~~~~~C~~c~~~~~s~~~e~f~~L 349 (577)
. +++||||||||++||+.|++++........ .........++|+|.+.+.++|..|+.. +.+.|+|+.|
T Consensus 29 ~------~~~QQDAhEFL~~LLd~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~l~s~i~C~~C~~~--s~~~e~~~~L 100 (245)
T cd02673 29 D------NDDQQDAHEFLLTLLEAIDDIMQVNRTNVPPSNIEIKRLNPLEAFKYTIESSYVCIGCSFE--ENVSDVGNFL 100 (245)
T ss_pred C------CCchhhHHHHHHHHHHHHHHHHHhhcccCCCCcccccccCHhHheeeEEEeEEEecCCCCe--eeecccccee
Confidence 7 899999999999999999987643211100 0111123457899999999999999985 6778999999
Q ss_pred eeccCCC-ccchhHHHhhhhh-hhhhccCcCCCCCceEEEEEEeccCCCceEEEEEEEEEeccccccccccccccCCccc
Q psy7711 350 SCYITTD-VKYMLPGLKNKLQ-DQITKRSPSLDRDAVYVKTSKVSRLPAYLTIQFVRFFYKEKERINAKVLKDIKFPIEF 427 (577)
Q Consensus 350 ~l~i~~~-~~~l~~~l~~~~~-e~i~~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~V~fp~~L 427 (577)
+|+++.. ...+++++..+.. +++++.|+.|+.. .+.|+.+|.++|++|+|||+||.|+.......|+ + .+
T Consensus 101 ~L~i~~~~~~~le~l~~~~~~~~~~e~~C~~C~~~-~a~k~~~i~~~P~vL~i~lkRf~~~~~~~~~~~~------~-~~ 172 (245)
T cd02673 101 DVSMIDNKLDIDELLISNFKTWSPIEKDCSSCKCE-SAISSERIMTFPECLSINLKRYKLRIATSDYLKK------N-EE 172 (245)
T ss_pred ccccccCCcchHHHHHHHhhcccccCccCCCCCCc-cceeechhhhCChhhEEeeEeeeecccccccccc------c-cc
Confidence 9999764 3456666666655 4566799999986 6788889999999999999999876422111111 1 22
Q ss_pred cccccCCHHHHhccccchHHHHHHHHHHHHHHHhhhhcccCCCchhhhhhhcccccCCccccccccccccchhcccCCCC
Q psy7711 428 DAYELCTPELQAKLAPMREKFKIAEEKEAFEEFRTQYVFISIPMDEIYVRFGQKIYAPVGDRIQDFGVKSTEFQSRGQGS 507 (577)
Q Consensus 428 dl~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 507 (577)
++.+|+.
T Consensus 173 ~~~~~~~------------------------------------------------------------------------- 179 (245)
T cd02673 173 IMKKYCG------------------------------------------------------------------------- 179 (245)
T ss_pred ccccccC-------------------------------------------------------------------------
Confidence 3332221
Q ss_pred CCCCCCCCCCCceeEEEeEEEEeecCCCCCCceEEEEECC--CCcEEEEeCCcceecChhhhhcc
Q psy7711 508 SPGRVDIGSNNSGYYTLQAVLTHKGRTSSSGHYVAWVKKP--NGTWIKCDDDKVYPISEEEVLKL 570 (577)
Q Consensus 508 ~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~~GHY~a~vr~~--~~~W~~~nD~~V~~v~~~~V~~~ 570 (577)
....|+|+|||+|.|.++++|||+||+|.. +++||+|||+.|+++++++|+..
T Consensus 180 ----------~~~~Y~L~~VV~H~G~~~~~GHY~a~vk~~~~~~~Wy~fnD~~V~~v~~~~v~~~ 234 (245)
T cd02673 180 ----------TDAKYSLVAVICHLGESPYDGHYIAYTKELYNGSSWLYCSDDEIRPVSKNDVSTN 234 (245)
T ss_pred ----------CCceEEEEEEEEECCCCCCCceEEEEEEcCCCCCeEEEeeCceeeEcCHHHHhhc
Confidence 123699999999999889999999999985 58999999999999999999853
No 27
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.1e-39 Score=314.00 Aligned_cols=259 Identities=19% Similarity=0.195 Sum_probs=200.5
Q ss_pred HHHHHHHHhhhcccCCCCCCC----CchhhhcccccccccCCCCCchhHHHHHHHhhccHHHHHHHHhhcCCCC-CCCCC
Q psy7711 158 ITASLRDLYECMDNMKISPSI----SPFIMLQGRYLPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQ-PGSNP 232 (577)
Q Consensus 158 ~~~~l~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~~~~-~~~~~ 232 (577)
-..+++.+.... +.+|.... .......+....+||.|+||+||+||++|.|+....+...+..+..... -...+
T Consensus 268 ~Eksl~~lq~eq-n~nw~F~~~~~~~~sk~~~~ps~~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~P 346 (749)
T COG5207 268 EEKSLRKLQSEQ-NANWEFLEKKRAPESKGESVPSPYVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNP 346 (749)
T ss_pred hHHHHHHHHHhh-hcCcchhccccCchhhcccCCCCccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeeecCC
Confidence 344666666443 44443322 1122222334469999999999999999999988777665544333221 13356
Q ss_pred hhhHHHHHHHHHHHHhcCC---CCCCCChHHHHHHHHhhCCccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC
Q psy7711 233 AQSITASLRDLYECMDNMK---ISPSISPFIMLQVLHNVFPRFADKTDDGSYMQQDANECWTEMVRMLKTALPGENEEGQ 309 (577)
Q Consensus 233 ~~~l~~~L~~Lf~~l~~~~---~~~~i~P~~~~~~l~~~~~~f~~~~~~~~~~QqDA~Efl~~ll~~L~~~~~~~~~~~~ 309 (577)
..+|.|+|.+|...|.... +...++|..|...+++-++.|+ .++||||+|||.+||+.|+......
T Consensus 347 ~~~l~CQl~kll~~mk~~p~~~y~ngi~p~~fk~~igq~h~eFg------~~~QQDA~EFLlfLL~kirk~~~S~----- 415 (749)
T COG5207 347 LECLFCQLMKLLSKMKETPDNEYVNGISPLDFKMLIGQDHPEFG------KFAQQDAHEFLLFLLEKIRKGERSY----- 415 (749)
T ss_pred chhHHHHHHHHHhhccCCCCccccCCcChhhHHHHHcCCchhhh------hhhhhhHHHHHHHHHHHHhhccchh-----
Confidence 7899999999999988753 4568999999999999999997 8999999999999999999855433
Q ss_pred CCCccchhhhccceEEeEEEEcCCCCCCCCCcccccceeeeeccCC--CccchhHHHhhhhh-hhhhccCcCCCCCceEE
Q psy7711 310 DSAKSSFIEQYFYTIMDTELKCSESETEPPTKGTESFQQLSCYITT--DVKYMLPGLKNKLQ-DQITKRSPSLDRDAVYV 386 (577)
Q Consensus 310 ~~~~~~~i~~lF~g~~~~~~~C~~c~~~~~s~~~e~f~~L~l~i~~--~~~~l~~~l~~~~~-e~i~~~c~~c~~~~~~~ 386 (577)
..+.|.++|.+.+..++.|..|+.. +.++|+...+.+++.. +..++.++++.|+. +++++.|+.|+.+..+.
T Consensus 416 ---~~~~It~lf~Fe~e~rlsC~~C~~v--~ySye~~~~i~i~le~n~E~~di~~~v~a~f~pdtiE~~CenCk~K~~a~ 490 (749)
T COG5207 416 ---LIPPITSLFEFEVERRLSCSGCMDV--SYSYESMLMICIFLEGNDEPQDIRKSVEAFFLPDTIEWSCENCKGKKKAS 490 (749)
T ss_pred ---cCCCcchhhhhhhcceecccccccc--cccccceEEEEeecccCcchhhHHHHHHheECccceeeehhhhcCccccc
Confidence 3456889999999999999999995 5567888877777654 44568889999888 67889999999999999
Q ss_pred EEEEeccCCCceEEEEEEEEEeccccccccccccccCCc--cccccccCCH
Q psy7711 387 KTSKVSRLPAYLTIQFVRFFYKEKERINAKVLKDIKFPI--EFDAYELCTP 435 (577)
Q Consensus 387 k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~V~fp~--~Ldl~~~~~~ 435 (577)
++..|.+||+||+++..||.+.+ +...|+..++.+.. -+++..|++.
T Consensus 491 ~k~~~kslPk~LIlq~~R~~lqn--y~v~kls~pi~~~~D~m~~~~s~msk 539 (749)
T COG5207 491 RKPFIKSLPKYLILQVGRYSLQN--YKVEKLSDPIEMRSDDMIKLGSFMSK 539 (749)
T ss_pred ccchhhccCceeEEecceeeccc--eeehhccCceEEccccccchhhHhhc
Confidence 99999999999999999998876 55777777777665 3777777655
No 28
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.9e-37 Score=302.77 Aligned_cols=233 Identities=33% Similarity=0.508 Sum_probs=187.6
Q ss_pred ccCCCCCchhHHHHHHHhhccHHHHHHHHhhcCCCCCCCCChhhHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHhhCCc
Q psy7711 192 GLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDNMKISPSISPFIMLQVLHNVFPR 271 (577)
Q Consensus 192 GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~l~~~L~~Lf~~l~~~~~~~~i~P~~~~~~l~~~~~~ 271 (577)
||.|.||+||+||+||+|++
T Consensus 1 Gl~N~~n~Cy~ns~lq~l~~------------------------------------------------------------ 20 (255)
T cd02257 1 GLNNLGNTCYLNSVLQALFS------------------------------------------------------------ 20 (255)
T ss_pred CccccCcchHHhHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999987
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-CCCCCccchhhhccceEEeEEEEcCCCCCCCCCcccccceeee
Q psy7711 272 FADKTDDGSYMQQDANECWTEMVRMLKTALPGENEE-GQDSAKSSFIEQYFYTIMDTELKCSESETEPPTKGTESFQQLS 350 (577)
Q Consensus 272 f~~~~~~~~~~QqDA~Efl~~ll~~L~~~~~~~~~~-~~~~~~~~~i~~lF~g~~~~~~~C~~c~~~~~s~~~e~f~~L~ 350 (577)
.||||+|||..+|+.|+.++...... .......+.+.++|++.+...+.|..|+... .....+..+.
T Consensus 21 ----------~q~Da~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~c~~c~~~~--~~~~~~~~l~ 88 (255)
T cd02257 21 ----------EQQDAHEFLLFLLDKLHEELKKSSKRTSDSSSLKSLIHDLFGGKLESTIVCLECGHES--VSTEPELFLS 88 (255)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCchhhhhcccEEeeEEECCCCCCCc--cCcccceeEE
Confidence 58999999999999999987653211 0112345789999999999999999998754 4444445555
Q ss_pred eccCCC---ccchhHHHhhhhhhhhh--ccCcCCC--CCceEEEEEEeccCCCceEEEEEEEEEeccccccccccccccC
Q psy7711 351 CYITTD---VKYMLPGLKNKLQDQIT--KRSPSLD--RDAVYVKTSKVSRLPAYLTIQFVRFFYKEKERINAKVLKDIKF 423 (577)
Q Consensus 351 l~i~~~---~~~l~~~l~~~~~e~i~--~~c~~c~--~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~V~f 423 (577)
++++.. ..+|.++|+.++..+.. ..|..|+ ....+.++..|.++|++|+|+++||.++.. +...|+..+|.|
T Consensus 89 l~~~~~~~~~~~l~~~l~~~~~~e~~~~~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~-~~~~k~~~~v~~ 167 (255)
T cd02257 89 LPLPVKGLPQVSLEDCLEKFFKEEILEGDNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNED-GTKEKLNTKVSF 167 (255)
T ss_pred eeccCCCCCCCcHHHHHHHhhhhhccCCCCcccCCCCcccceeEEEecccCCceeEEEeeceeeccc-cccccCCCeEeC
Confidence 555544 57899999999986544 4688887 678889999999999999999999999864 568899999999
Q ss_pred CccccccccCCHHHHhccccchHHHHHHHHHHHHHHHhhhhcccCCCchhhhhhhcccccCCccccccccccccchhccc
Q psy7711 424 PIEFDAYELCTPELQAKLAPMREKFKIAEEKEAFEEFRTQYVFISIPMDEIYVRFGQKIYAPVGDRIQDFGVKSTEFQSR 503 (577)
Q Consensus 424 p~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 503 (577)
|.++++..++....
T Consensus 168 ~~~l~~~~~~~~~~------------------------------------------------------------------ 181 (255)
T cd02257 168 PLELDLSPYLSEGE------------------------------------------------------------------ 181 (255)
T ss_pred CCcccCcccccccc------------------------------------------------------------------
Confidence 99999977653210
Q ss_pred CCCCCCCCCCCCCCCceeEEEeEEEEeecCCCCCCceEEEEECCC-CcEEEEeCCcceecChhhhhcc
Q psy7711 504 GQGSSPGRVDIGSNNSGYYTLQAVLTHKGRTSSSGHYVAWVKKPN-GTWIKCDDDKVYPISEEEVLKL 570 (577)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~~GHY~a~vr~~~-~~W~~~nD~~V~~v~~~~V~~~ 570 (577)
...........|+|+|||+|.|.+.++|||+||+|..+ ++||+|||+.|++++.++|...
T Consensus 182 -------~~~~~~~~~~~Y~L~~vi~h~G~~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~~~~~ 242 (255)
T cd02257 182 -------KDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEVLEF 242 (255)
T ss_pred -------ccccccCCCccEEEEEEEEEecCCCCCcCeEEEEeCCCCCceEEEeccccEEcCHHHhhhc
Confidence 00011223458999999999998779999999999965 9999999999999999999753
No 29
>KOG1863|consensus
Probab=100.00 E-value=1.9e-37 Score=353.77 Aligned_cols=295 Identities=28% Similarity=0.403 Sum_probs=251.7
Q ss_pred cccccccccCCCCCchhHHHHHHHhhccHHHHHHHHhhcCCCCCCCCChhhHHHHHHHHHHHHhcCCCCCCCChHHHHHH
Q psy7711 185 QGRYLPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDNMKISPSISPFIMLQV 264 (577)
Q Consensus 185 ~~~~~~~GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~l~~~L~~Lf~~l~~~~~~~~i~P~~~~~~ 264 (577)
+...-|+||.|+||||||||+||+|+.++.||+.+++.+... .+..+...+..+|+.||..|+.++ ..++.|..+...
T Consensus 165 ~~tg~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~~~-~~~~~~~~v~~~lq~lF~~LQ~s~-~k~Vdt~~~~~~ 242 (1093)
T KOG1863|consen 165 RLTGFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPPFT-GHEDPRRSIPLALQRLFYELQMSK-RKYVDTSELTKS 242 (1093)
T ss_pred hcCCCCccccCCCceeeehHHHHHHHccHHHHHHHhcCCCCC-CcccccchHHHHHHHHHHHHhhcC-CCCcCchhhhhh
Confidence 334456999999999999999999999999999999988522 244566679999999999999985 559999999888
Q ss_pred HHhhCCccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCCCccchhhhccceEEeEEEEcCCCCCCCCCcccc
Q psy7711 265 LHNVFPRFADKTDDGSYMQQDANECWTEMVRMLKTALPGENEEGQDSAKSSFIEQYFYTIMDTELKCSESETEPPTKGTE 344 (577)
Q Consensus 265 l~~~~~~f~~~~~~~~~~QqDA~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~i~~lF~g~~~~~~~C~~c~~~~~s~~~e 344 (577)
+.... .. .++|||++||+..|+|.|++.+.... ....+.++|.|.+.+.+.|..|..+ +.+.|
T Consensus 243 ~~~~~--~~------~~~QqDvqEf~~~l~d~LE~~~~~~~-------~~~~l~~lf~g~~~~~i~c~~~~~~--s~r~e 305 (1093)
T KOG1863|consen 243 LGWDS--ND------SFEQQDVQEFLTKLLDWLEDSMIDAK-------VENTLQDLFTGKMKSVIKCIDVDFE--SSRSE 305 (1093)
T ss_pred hhccc--cc------HHhhhhHHHHHHHHHHHHHhhccchh-------hhhhhhhhhcCCcceEEEEEeeeee--ccccc
Confidence 77644 11 56999999999999999999887653 3567999999999999999999986 47889
Q ss_pred cceeeeeccCCCccchhHHHhhhhhhhhh----ccCcCCCCCceEEEEEEeccCCCceEEEEEEEEEecccccccccccc
Q psy7711 345 SFQQLSCYITTDVKYMLPGLKNKLQDQIT----KRSPSLDRDAVYVKTSKVSRLPAYLTIQFVRFFYKEKERINAKVLKD 420 (577)
Q Consensus 345 ~f~~L~l~i~~~~~~l~~~l~~~~~e~i~----~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~ 420 (577)
.|+++.+++. +..++.++|..|+..++. .+|..|.....+.+...+.+||++|.|+|+||.|+..++...|++..
T Consensus 306 ~f~d~ql~~~-g~~nl~~sf~~y~~~E~l~gdn~~~~~~~~~~~a~k~~~f~~lPpvl~~qL~Rf~~~~~~~~~~Ki~d~ 384 (1093)
T KOG1863|consen 306 SFLDLQLNGK-GVKNLEDSLHLYFEAEILLGDNKYDAECHGLQDAKKGVLFDSLPPVLFIQLMRFEYDFSTGQKIKINDK 384 (1093)
T ss_pred cccCcccccc-chhhHHHHHHHhhhHHHhcCCccccccccchhhhhcceeeccCCchhhhhhhheeeeccCCceeehhhc
Confidence 9999999985 566799999999995554 37899999999999999999999999999999999999999999999
Q ss_pred ccCCccccccccCCH-HHHhccccchHHHHHHHHHHHHHHHhhhhcccCCCchhhhhhhcccccCCccccccccccccch
Q psy7711 421 IKFPIEFDAYELCTP-ELQAKLAPMREKFKIAEEKEAFEEFRTQYVFISIPMDEIYVRFGQKIYAPVGDRIQDFGVKSTE 499 (577)
Q Consensus 421 V~fp~~Ldl~~~~~~-~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 499 (577)
+.||..|+|.+|... +. .+
T Consensus 385 ~~fp~~i~~d~~~~~~~~----------------------------------------------~~-------------- 404 (1093)
T KOG1863|consen 385 FEFPLIIDMDRYLSRFKA----------------------------------------------EE-------------- 404 (1093)
T ss_pred cCCccccccchhccccch----------------------------------------------hh--------------
Confidence 999999999877542 00 00
Q ss_pred hcccCCCCCCCCCCCCCCCceeEEEeEEEEeecCCCCCCceEEEEECC-CCcEEEEeCCcceecChhhhhccCCCCCC
Q psy7711 500 FQSRGQGSSPGRVDIGSNNSGYYTLQAVLTHKGRTSSSGHYVAWVKKP-NGTWIKCDDDKVYPISEEEVLKLSGGGKV 576 (577)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~~GHY~a~vr~~-~~~W~~~nD~~V~~v~~~~V~~~~~Gg~~ 576 (577)
......|+|+||++|.|. +++|||++|++.. .++|++|||..|+.++..+|+..++||+-
T Consensus 405 ----------------~~~~~~y~l~~v~vh~g~-~~~ghy~~~i~~~~~~~w~kfdd~~v~~~~~~~~l~~~~g~~~ 465 (1093)
T KOG1863|consen 405 ----------------SERSAVYSLHAVLVHSGD-AHSGHYVAYINPKLDGKWVKFDDLVVTVVSEKEALEQNYGTEE 465 (1093)
T ss_pred ----------------hhccceeccchhhccccc-ccCccceeeecchhhccceeccCceeeeccHHHHHHhhCCCcc
Confidence 001147999999999885 9999999999964 89999999999999999999999999874
No 30
>KOG1864|consensus
Probab=100.00 E-value=4e-36 Score=317.08 Aligned_cols=299 Identities=28% Similarity=0.387 Sum_probs=239.5
Q ss_pred cccCCCCCchhHH--HHHHHhhccHHHHHHHHhhcCCCCCCCCChhhHHHHHHHHHHHHhcC-CCCCCCChHHHHHHHHh
Q psy7711 191 AGLNNLGNTCYMN--AVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDNM-KISPSISPFIMLQVLHN 267 (577)
Q Consensus 191 ~GL~N~GNtCY~N--SvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~l~~~L~~Lf~~l~~~-~~~~~i~P~~~~~~l~~ 267 (577)
-|..|.+++|+.| ++.|.++.+-.++...................+...+..+|...... .....+.|..|+..+++
T Consensus 233 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~p~~~~~~~~~ 312 (587)
T KOG1864|consen 233 FGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLTSLKRSYIIKEELLTCLLDLFSSISSRKKLVGRISPTRFISDLIK 312 (587)
T ss_pred cCccccCccccccchhhHHHHHhhhhhcccccchhhcccchhhhhHHHHHHhhhhccchhhhcccccccCcchhhhhhhh
Confidence 6788899999999 99999999998886655444333222223445666666666655443 12457889999999999
Q ss_pred hCCccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC------------C-------------CCCCCccchhhhccc
Q psy7711 268 VFPRFADKTDDGSYMQQDANECWTEMVRMLKTALPGENE------------E-------------GQDSAKSSFIEQYFY 322 (577)
Q Consensus 268 ~~~~f~~~~~~~~~~QqDA~Efl~~ll~~L~~~~~~~~~------------~-------------~~~~~~~~~i~~lF~ 322 (577)
....|. .++|||||||+.++++.+++.+..... . ........++..+|.
T Consensus 313 ~~~~f~------~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~v~~lf~ 386 (587)
T KOG1864|consen 313 ENELFT------NGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTSAASWTNKGHHKSLRENWVSKLFQ 386 (587)
T ss_pred cCCccC------chhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccccccccccccccccccchhHHHHhhc
Confidence 999998 899999999999999999887655431 0 001225678999999
Q ss_pred eEEeEEEEcCCCCCCCCCcccccceeeeeccCC-CccchhHHHhhhhhhhh-----hccCcCCCCCceEEEEEEeccCCC
Q psy7711 323 TIMDTELKCSESETEPPTKGTESFQQLSCYITT-DVKYMLPGLKNKLQDQI-----TKRSPSLDRDAVYVKTSKVSRLPA 396 (577)
Q Consensus 323 g~~~~~~~C~~c~~~~~s~~~e~f~~L~l~i~~-~~~~l~~~l~~~~~e~i-----~~~c~~c~~~~~~~k~~~i~~lP~ 396 (577)
|++..+..|..|+.. +.+.+.|.+++++++. ...++..+++.+...+. .++|+.|.....+.++..++.+|.
T Consensus 387 g~l~~et~Clsc~t~--T~~de~f~D~~~~v~~de~~si~~~l~~~~~~e~l~g~nky~c~~c~s~qeae~~l~~k~lp~ 464 (587)
T KOG1864|consen 387 GILTNETRCLSCETI--TSRDEGFLDLSVAVEIDENTSITNLLKSFSSTETLSGENKYSCENCCSLQEAERRLKIKKLPY 464 (587)
T ss_pred Ceeeeeeeecccccc--ccccccccccceeccccccccHHHHHHHhcchhhccCCCcccccccCchhhHHHhccccCCcc
Confidence 999999999999984 7889999999999874 45578888888776443 468999999999999999999999
Q ss_pred ceEEEEEEEEEeccccccccccccccCCccccccccCCHHHHhccccchHHHHHHHHHHHHHHHhhhhcccCCCchhhhh
Q psy7711 397 YLTIQFVRFFYKEKERINAKVLKDIKFPIEFDAYELCTPELQAKLAPMREKFKIAEEKEAFEEFRTQYVFISIPMDEIYV 476 (577)
Q Consensus 397 ~L~i~l~Rf~~~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (577)
+|+|||+||.|........|+...|.||.++.+.....+
T Consensus 465 ~L~l~Lkrfk~~~~~~~~~kl~~~v~~plel~l~~~~~~----------------------------------------- 503 (587)
T KOG1864|consen 465 VLTLHLKRFKYSEQQNRYTKLLYRVVFPLELRLKDTLKD----------------------------------------- 503 (587)
T ss_pred eeeeehhccccccccccccccccccccccceeecccccc-----------------------------------------
Confidence 999999999999877778999999999999987322110
Q ss_pred hhcccccCCccccccccccccchhcccCCCCCCCCCCCCCCCceeEEEeEEEEeecCCCCCCceEEEEECCCCcEEEEeC
Q psy7711 477 RFGQKIYAPVGDRIQDFGVKSTEFQSRGQGSSPGRVDIGSNNSGYYTLQAVLTHKGRTSSSGHYVAWVKKPNGTWIKCDD 556 (577)
Q Consensus 477 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~~GHY~a~vr~~~~~W~~~nD 556 (577)
..+....|.|+|||+|.|.+++.|||+||+|.....|+.|||
T Consensus 504 --------------------------------------~~~~~~~Y~L~avVvH~G~~p~~GHYia~~r~~~~nWl~fdD 545 (587)
T KOG1864|consen 504 --------------------------------------DNNPDRKYDLVAVVVHLGSTPNRGHYVAYVKSLDFNWLLFDD 545 (587)
T ss_pred --------------------------------------ccCccceeeEEEEEEeccCCCCCcceEEEEeeCCCCceeccc
Confidence 011135899999999999999999999999995555999999
Q ss_pred CcceecChhhhhccCCCCCC
Q psy7711 557 DKVYPISEEEVLKLSGGGKV 576 (577)
Q Consensus 557 ~~V~~v~~~~V~~~~~Gg~~ 576 (577)
+.|+.++.+.|....|++-+
T Consensus 546 ~~V~~~s~~~v~~~~~~s~~ 565 (587)
T KOG1864|consen 546 DNVEPISEEPVSEFTGSSGD 565 (587)
T ss_pred ccccccCcchhhhccCCCcc
Confidence 99999999999998877654
No 31
>KOG1873|consensus
Probab=100.00 E-value=1.7e-35 Score=303.77 Aligned_cols=157 Identities=25% Similarity=0.370 Sum_probs=112.7
Q ss_pred ccccccccCCCCCchhHHHHHHHhhccHHHHHHHHhhcCCCC----------------CCCCChhhHHHHHHHHHHHHhc
Q psy7711 186 GRYLPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQ----------------PGSNPAQSITASLRDLYECMDN 249 (577)
Q Consensus 186 ~~~~~~GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~~~~----------------~~~~~~~~l~~~L~~Lf~~l~~ 249 (577)
.....+||.|+|||||+|||+|+|..+|.+|+.|........ ....+...++.+|..|..+...
T Consensus 201 ~~~~VrGL~NLGNTCFFNavMQnL~qt~~L~d~l~e~~~Sgt~v~I~~~~~s~l~~L~~el~~~g~lt~al~~~~e~~e~ 280 (877)
T KOG1873|consen 201 RGYIVRGLTNLGNTCFFNAVMQNLAQTPALRDVLKEEKESGTSVKIRPPLDSSLSPLFSELSSPGPLTYALANLLEMSET 280 (877)
T ss_pred ccccccccccccchhhHHHHHHHHhhcHHHHHHHHhhccCCceeEecCccccchhhHHHhccCCcchhHHHHhhhhhhhc
Confidence 345569999999999999999999999999999987665431 1223445677888886665555
Q ss_pred CCCCCCCChHHHHHHHHhhCCccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC-------------------C---
Q psy7711 250 MKISPSISPFIMLQVLHNVFPRFADKTDDGSYMQQDANECWTEMVRMLKTALPGENE-------------------E--- 307 (577)
Q Consensus 250 ~~~~~~i~P~~~~~~l~~~~~~f~~~~~~~~~~QqDA~Efl~~ll~~L~~~~~~~~~-------------------~--- 307 (577)
. ...++|..|...+....|+|. +|.||||||+|+.|||.|..+--.... .
T Consensus 281 ~--ksv~~Pr~lF~~~C~k~pqF~------g~~QhDsHELLR~LLD~l~~EE~~~~kk~Il~~fG~~t~~l~scle~~q~ 352 (877)
T KOG1873|consen 281 T--KSVITPRTLFGQFCSKAPQFR------GYDQHDSHELLRCLLDSLRSEESRRRKKNILSNFGGETSSLVSCLECGQK 352 (877)
T ss_pred c--CCccCHHHHHHHHHHhCCccc------ccccccHHHHHHHHHHhhhHHHHHHHHHhHHHhhCccccchhhhhhccch
Confidence 5 679999999999999999999 999999999999999998765211100 0
Q ss_pred ----CCCCCccchhhhccceEEeEEEEcCCCCCCCCCcccccceeeeecc
Q psy7711 308 ----GQDSAKSSFIEQYFYTIMDTELKCSESETEPPTKGTESFQQLSCYI 353 (577)
Q Consensus 308 ----~~~~~~~~~i~~lF~g~~~~~~~C~~c~~~~~s~~~e~f~~L~l~i 353 (577)
........++...|.|-+.+.+.|..|. ++...+.|.+.+++|
T Consensus 353 sKvYe~f~~~~~~vp~~~~~~~~s~~~~~~~~---vss~~~s~~~~t~pv 399 (877)
T KOG1873|consen 353 SKVYEPFKDLSLPVPLSFNGPLTSQIECQACD---VSSVHESFLSETLPV 399 (877)
T ss_pred hhcccccccCCcccccccCCCcccchhhhccc---eeccchhhccccccc
Confidence 0012223344466777777777777776 244455555555554
No 32
>KOG4598|consensus
Probab=100.00 E-value=2.2e-35 Score=298.99 Aligned_cols=312 Identities=18% Similarity=0.211 Sum_probs=225.1
Q ss_pred cccccccCCCCCchhHHHHHHHhhccHHHHHHHHhhcCCCCCCCCChhhHHHHHHHHHHHHhcCCCCCCCChHHHHHHHH
Q psy7711 187 RYLPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDNMKISPSISPFIMLQVLH 266 (577)
Q Consensus 187 ~~~~~GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~l~~~L~~Lf~~l~~~~~~~~i~P~~~~~~l~ 266 (577)
..+.+||.|..-|||+|+.+|+|+.+|.|++.++..+ ..++....+.+
T Consensus 84 ~~~yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yts~-----------------------------~~~~et~dlt~--- 131 (1203)
T KOG4598|consen 84 GHRYVGLVNQASNDLLFEQSCAISLHDSGISKCYTSE-----------------------------NDSLETKDLTQ--- 131 (1203)
T ss_pred CcceEeehhhHHHHHHHHHhhhhccChhhhhhhhCCC-----------------------------cccccchhhHh---
Confidence 3567999999999999999999999999999886111 12233332222
Q ss_pred hhCCccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCCCccchhhhccceEEeEEEEcCCCCCCCCCcccccc
Q psy7711 267 NVFPRFADKTDDGSYMQQDANECWTEMVRMLKTALPGENEEGQDSAKSSFIEQYFYTIMDTELKCSESETEPPTKGTESF 346 (577)
Q Consensus 267 ~~~~~f~~~~~~~~~~QqDA~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~i~~lF~g~~~~~~~C~~c~~~~~s~~~e~f 346 (577)
.|+|.+.. .++|+|.+|+.+.++|.|+..++.. ....+|++++.|++...+.|.+|+.+ +.+.+.|
T Consensus 132 ----sfgw~s~e-a~~qhdiqelcr~mfdalehk~k~t-------~~~~li~~ly~g~m~d~v~cl~c~~e--~~~~d~f 197 (1203)
T KOG4598|consen 132 ----SFGWTSNE-AYDQHDVQELCRLMFDALEHKWKGT-------EHEKLIQDLYRGTMEDFVACLKCGRE--SVKTDYF 197 (1203)
T ss_pred ----hcCCCcch-hhhhhhHHHHHHHHHHHHHhhhcCc-------hHHHHHHHHhcchHHHHHHHHHcCcc--cccccee
Confidence 34444322 5899999999999999999887764 34678999999999999999999997 5788999
Q ss_pred eeeeeccCC-----CccchhHHHhhhhhhhhh-----ccCcCCCCCceEEEEEEeccCCCceEEEEEEEEEecccccccc
Q psy7711 347 QQLSCYITT-----DVKYMLPGLKNKLQDQIT-----KRSPSLDRDAVYVKTSKVSRLPAYLTIQFVRFFYKEKERINAK 416 (577)
Q Consensus 347 ~~L~l~i~~-----~~~~l~~~l~~~~~e~i~-----~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~K 416 (577)
++|++++.. ...+++++|..|.+.+.. +-|++|..+..+.|-.+|+.+|-+|+|||+||.||-.+.-..|
T Consensus 198 ld~pl~v~pfg~~~ay~sieeal~afvqpe~ldg~nqy~ce~ck~k~dahkgl~~~~fpy~lt~~lkrfdfdy~tmhrik 277 (1203)
T KOG4598|consen 198 LDLPLAVKPFGAIHAYKSVEEALTAFVQPELLDGSNQYMCENCKSKQDAHKGLRITQFPYLLTIQLKRFDFDYNTMHRIK 277 (1203)
T ss_pred ecccccccCCcchhhhhhHHHHHHHhcChhhcCCccHHHHhhhhhhhhhhcCceeeccceeeEEeeecccccchheeeee
Confidence 999999853 345789999999886654 4699999999999999999999999999999999999888999
Q ss_pred ccccccCCccccccccCCHHHHhccccchHHHHHHHHHHHHHHHhhhhcccCCCchhhhhhhcccccCCcccccccccc-
Q psy7711 417 VLKDIKFPIEFDAYELCTPELQAKLAPMREKFKIAEEKEAFEEFRTQYVFISIPMDEIYVRFGQKIYAPVGDRIQDFGV- 495 (577)
Q Consensus 417 i~~~V~fp~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~- 495 (577)
+++++.||..||+..|...+-... ....+ . ......+...++. .++.+.+.
T Consensus 278 lnd~~tfp~~l~ln~~in~~~~s~---~~~~~-------~-----~~~~~~~~~~~~~-------------~~~~~~n~~ 329 (1203)
T KOG4598|consen 278 LNDKMTFPDVLDLNDYVNKEKRST---TSSAW-------Q-----QIGKNKSENEEDD-------------MELGSPNPK 329 (1203)
T ss_pred ecccccCcccccHHHhhhhccCCc---chhHh-------h-----hcccccccccccc-------------cccCCCCcc
Confidence 999999999999988864431000 00000 0 0000000000000 00000000
Q ss_pred -------ccchhcccCCCCC-------CCCCCCCCCCceeEEEeEEEEeecCCCCCCceEEEEECC-CCcEEEEeCCcce
Q psy7711 496 -------KSTEFQSRGQGSS-------PGRVDIGSNNSGYYTLQAVLTHKGRTSSSGHYVAWVKKP-NGTWIKCDDDKVY 560 (577)
Q Consensus 496 -------~~~~~~~~~~~~~-------~~~~~~~~~~~~~Y~L~aVI~H~G~s~~~GHY~a~vr~~-~~~W~~~nD~~V~ 560 (577)
+...++.+..... ...+.........|+|+||.+|.| ++.+|||+||+|+- ++.||+|||.+|+
T Consensus 330 ~~~~~~~s~~~~~~~~n~~~g~~~~~~~~~~~~~~sg~~~yelf~imihsg-~a~gghy~ayik~~d~~~w~~fnd~~v~ 408 (1203)
T KOG4598|consen 330 RCTPGVQSPNRYQGSENVCVGQPIDHAAVDDIVKTSGDNVYELFSVMVHSG-NAAGGHYFAYIKNLDQDRWYVFNDTRVD 408 (1203)
T ss_pred cCcccccCcccccCccccccCCcCchhhhhhHhhcCCccHHHhhhhheecC-CCCCceeeeeecccCcCceEEecCcccc
Confidence 0000110000000 000111223456899999999999 49999999999984 8899999999999
Q ss_pred ecChhhhhccCCC
Q psy7711 561 PISEEEVLKLSGG 573 (577)
Q Consensus 561 ~v~~~~V~~~~~G 573 (577)
-++.++|.+..||
T Consensus 409 ~~t~~~i~~sfgg 421 (1203)
T KOG4598|consen 409 FATPLEIEKSFGG 421 (1203)
T ss_pred ccCHHHHHHhhCC
Confidence 9999999998888
No 33
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=100.00 E-value=3e-32 Score=273.31 Aligned_cols=281 Identities=21% Similarity=0.226 Sum_probs=226.3
Q ss_pred cccCCCCCchhHHHHHHHhhccHHHHHHHHhhcCCCCCCCCChhhHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHhhC
Q psy7711 191 AGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMD-NMKISPSISPFIMLQVLHNVF 269 (577)
Q Consensus 191 ~GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~l~~~L~~Lf~~l~-~~~~~~~i~P~~~~~~l~~~~ 269 (577)
.||.|.+++||+||+||+|+.+|++|+.++... . +....|+.++|.-||.+|. .++ .....+..|+++++..-
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~-~----c~~e~cL~cELgfLf~ml~~~~~-g~~cq~sNflr~l~~~~ 74 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL-E----CPKEFCLLCELGFLFDMLDSKAK-GINCQASNFLRALSWIP 74 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc-C----CCccccHHHHHHHHHHHhhhhcC-CCcChHHHHHHHHhcCH
Confidence 599999999999999999999999999998776 2 4566799999999999999 654 66778999999988764
Q ss_pred CccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC------CCCCCccchhhhccceEEeEEEEcCCCCCCCCCccc
Q psy7711 270 PRFADKTDDGSYMQQDANECWTEMVRMLKTALPGENEE------GQDSAKSSFIEQYFYTIMDTELKCSESETEPPTKGT 343 (577)
Q Consensus 270 ~~f~~~~~~~~~~QqDA~Efl~~ll~~L~~~~~~~~~~------~~~~~~~~~i~~lF~g~~~~~~~C~~c~~~~~s~~~ 343 (577)
...+ .+.|+|.++|+.+|++.|+.++...... .......+.+.++|+.......+|..|+.+ +.+.
T Consensus 75 ~a~~------l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~c~~c~~~--~~~~ 146 (295)
T PF13423_consen 75 EAAA------LGLQQDIQSLNRFLLEQLSMELLTFKPDIFHTSENSSSSPESSISQLFGTSFETTIRCTSCGHE--SVKE 146 (295)
T ss_pred HHHh------cchhHHHHHHHHHHHHHHhHHHHhcCcccccccccccCCCcchHHHHhCcceeeeecccccCCe--EEee
Confidence 3233 4579999999999999999997665431 122345678999999999999999999996 4555
Q ss_pred ccceeeeeccCC--CccchhHHHhhhhhhhhh--ccCcCCCCCceEEEEEEeccCCCceEEEEEEEEEeccccccccccc
Q psy7711 344 ESFQQLSCYITT--DVKYMLPGLKNKLQDQIT--KRSPSLDRDAVYVKTSKVSRLPAYLTIQFVRFFYKEKERINAKVLK 419 (577)
Q Consensus 344 e~f~~L~l~i~~--~~~~l~~~l~~~~~e~i~--~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~ 419 (577)
+....+.+..+. ...++.+.|+.++..+.. ..|+.|++......+..|.++|++|.|.++|+.++ ..+ ..|...
T Consensus 147 ~~~~~~~l~yp~~~~~~tf~~~Le~sl~~e~~~~a~C~~C~~~~~~~~~r~i~~LPpVL~In~~~~~~~-~~w-~~~~~~ 224 (295)
T PF13423_consen 147 SSTLVLDLPYPPSNSNVTFSQVLEHSLNREQQTRAWCEKCNKYQPTEQRRTIRSLPPVLSINLNRYSEE-EFW-PKKNWL 224 (295)
T ss_pred cceeeeeccCCCCCccchHHHHHHHHHhhcccccccccccccccceeeeeeccCCCcEEEEEccCCCcc-ccc-ccccCC
Confidence 666666655544 345788999999884443 48999999999999999999999999999999988 445 889999
Q ss_pred cccCCccccccccCCHHHHhccccchHHHHHHHHHHHHHHHhhhhcccCCCchhhhhhhcccccCCccccccccccccch
Q psy7711 420 DIKFPIEFDAYELCTPELQAKLAPMREKFKIAEEKEAFEEFRTQYVFISIPMDEIYVRFGQKIYAPVGDRIQDFGVKSTE 499 (577)
Q Consensus 420 ~V~fp~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 499 (577)
.+.+|..+++..++.++....
T Consensus 225 ~~~ip~~i~~~~~~~~~~~~~----------------------------------------------------------- 245 (295)
T PF13423_consen 225 KIWIPPSINLPHFIADDSQSD----------------------------------------------------------- 245 (295)
T ss_pred ceecceeeecccccccccccc-----------------------------------------------------------
Confidence 999999998876643322100
Q ss_pred hcccCCCCCCCCCCCCCCCceeEEEeEEEEeecCCCCCCceEEEEECC---CCcEEEEeCCcc
Q psy7711 500 FQSRGQGSSPGRVDIGSNNSGYYTLQAVLTHKGRTSSSGHYVAWVKKP---NGTWIKCDDDKV 559 (577)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~~GHY~a~vr~~---~~~W~~~nD~~V 559 (577)
..+.....+|+|.|+|+|.|.+.++|||||+||.. +++||.|||-.|
T Consensus 246 -------------~~~~~~~~~Y~L~~~V~~i~~~~~~~HlVs~vrv~~~~~~~W~lFNDflV 295 (295)
T PF13423_consen 246 -------------LEGESGIFKYELRSMVCHIGDSIESGHLVSLVRVGPSDDSQWYLFNDFLV 295 (295)
T ss_pred -------------ccCCCCceEEEEEEEEEEecCCCCCCceEEEEEcCCCCCCcEEEECcEeC
Confidence 00233456899999999999999999999999985 479999999765
No 34
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.5e-33 Score=271.11 Aligned_cols=229 Identities=17% Similarity=0.165 Sum_probs=174.8
Q ss_pred cccccccCCCCCchhHHHHHHHhhccHHHHHHHHhhcCCCCCCCCChhhHHHHHHHHHHHHhcCCCCCCCChHHHHHHHH
Q psy7711 187 RYLPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDNMKISPSISPFIMLQVLH 266 (577)
Q Consensus 187 ~~~~~GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~l~~~L~~Lf~~l~~~~~~~~i~P~~~~~~l~ 266 (577)
....+||.|.|.|||+||+||+|+++|+||+++.... .......++.++|..||.. +.
T Consensus 12 ~t~~~gl~~~~~~~y~n~~lq~~~~~~~~~~~~~~~~----~~~~~~~~l~~el~~lfs~--------------~i---- 69 (268)
T cd02672 12 KTNYAGLENHITNSYCNSLLQLLYFIPPFRNFTAIIL----VACPKESCLLCELGYLFST--------------LI---- 69 (268)
T ss_pred cccccccccCCccchHHHHHHHHHhcHHHHHHHHhhc----ccCCcCccHHHHHHHHHHH--------------HH----
Confidence 3457999999999999999999999999999843322 2234567999999999911 11
Q ss_pred hhCCccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCCCccchhhhccceEEeEEEEcCCCCCCCCCcccccc
Q psy7711 267 NVFPRFADKTDDGSYMQQDANECWTEMVRMLKTALPGENEEGQDSAKSSFIEQYFYTIMDTELKCSESETEPPTKGTESF 346 (577)
Q Consensus 267 ~~~~~f~~~~~~~~~~QqDA~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~i~~lF~g~~~~~~~C~~c~~~~~s~~~e~f 346 (577)
+-|-.+|++.+..+.... + ..|++. +.+.+++
T Consensus 70 --------------------q~F~~fll~~i~~~~~~~----------------~----------~~C~~~--s~~~~~~ 101 (268)
T cd02672 70 --------------------QNFTRFLLETISQDQLGT----------------P----------FSCGTS--RNSVSLL 101 (268)
T ss_pred --------------------HHHHHHHHHHHHHHhccc----------------C----------CCCCce--eeccccc
Confidence 134456777777543221 0 567774 6778999
Q ss_pred eeeeeccCCC----ccchhHHHhhhhhhhhh--ccCcCCCCCceEEEEEEeccCCC----ceEEEEEEEEEeccc-----
Q psy7711 347 QQLSCYITTD----VKYMLPGLKNKLQDQIT--KRSPSLDRDAVYVKTSKVSRLPA----YLTIQFVRFFYKEKE----- 411 (577)
Q Consensus 347 ~~L~l~i~~~----~~~l~~~l~~~~~e~i~--~~c~~c~~~~~~~k~~~i~~lP~----~L~i~l~Rf~~~~~~----- 411 (577)
+.|+++++.. ..++.++|+.+++++.. .+|+.|+....+.|+.+|.++|+ +|+|||+||.+....
T Consensus 102 ~~LsLpip~~~~~~~~sl~~cL~~~~~~E~~~~~~C~~C~~~~~a~k~~~i~~lP~~L~~VL~i~lkrf~~~~~~~~~~~ 181 (268)
T cd02672 102 YTLSLPLGSTKTSKESTFLQLLKRSLDLEKVTKAWCDTCCKYQPLEQTTSIRHLPDILLLVLVINLSVTNGEFDDINVVL 181 (268)
T ss_pred eeeeeecCccccccCCCHHHHHHHHhhhhhcccccccccCcccccEEEEEeecCCCcccceEEEEEeccChhhcccCcce
Confidence 9999999853 35799999999986543 58999999999999999999999 999999999865421
Q ss_pred cccccccccccCCccccccccCCHHHHhccccchHHHHHHHHHHHHHHHhhhhcccCCCchhhhhhhcccccCCcccccc
Q psy7711 412 RINAKVLKDIKFPIEFDAYELCTPELQAKLAPMREKFKIAEEKEAFEEFRTQYVFISIPMDEIYVRFGQKIYAPVGDRIQ 491 (577)
Q Consensus 412 ~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 491 (577)
....|+...|.||..+++..+...
T Consensus 182 ~~~~~~~~~v~f~~~~~~~~~~~~-------------------------------------------------------- 205 (268)
T cd02672 182 PSGKVMQNKVSPKAIDHDKLVKNR-------------------------------------------------------- 205 (268)
T ss_pred eEEEecCCeecccccccchhhhcc--------------------------------------------------------
Confidence 123566778888877665321100
Q ss_pred ccccccchhcccCCCCCCCCCCCCCCCceeEEEeEEEEeecCCCCCCceEEEEECC-----CCcEEEEeCCcceecCh
Q psy7711 492 DFGVKSTEFQSRGQGSSPGRVDIGSNNSGYYTLQAVLTHKGRTSSSGHYVAWVKKP-----NGTWIKCDDDKVYPISE 564 (577)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~~GHY~a~vr~~-----~~~W~~~nD~~V~~v~~ 564 (577)
+......|+|+|||+|.|.+.++|||+||+|.. .++||.|||..|+++++
T Consensus 206 -----------------------~~~~~~~Y~L~gvV~hig~~~~~GHyva~vk~~~~~~~~~~WylFND~~V~~vs~ 260 (268)
T cd02672 206 -----------------------GQESIYKYELVGYVCEINDSSRGQHNVVFVIKVNEESTHGRWYLFNDFLVTPVSE 260 (268)
T ss_pred -----------------------CCCCCceEEEEEEEEEecCCCCCCcEEEEEEccCCCCCCCcEEEecCeEEEEcCc
Confidence 011235899999999999867999999999984 57899999999999987
No 35
>KOG1870|consensus
Probab=99.97 E-value=5.2e-32 Score=302.03 Aligned_cols=160 Identities=24% Similarity=0.311 Sum_probs=134.4
Q ss_pred ccccccccCCCCCchhHHHHHHHhhccHHHHHHHHhhcCCC----CCCCCChhhHHHHHHHHHHHHhcCCCCCCCChHHH
Q psy7711 186 GRYLPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGL----QPGSNPAQSITASLRDLYECMDNMKISPSISPFIM 261 (577)
Q Consensus 186 ~~~~~~GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~~~----~~~~~~~~~l~~~L~~Lf~~l~~~~~~~~i~P~~~ 261 (577)
...+.+||.|+|||||||+.+|||.+.+.++.+++...... .++......+...+..+...++.+.. ..+.|..+
T Consensus 242 ~~~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~~~-~~v~~~~~ 320 (842)
T KOG1870|consen 242 SERGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQLWSGNK-SAVAPTSF 320 (842)
T ss_pred CcccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHHhccCCc-cccCchhh
Confidence 34677999999999999999999999999999987544322 23445666788899999999999853 37999999
Q ss_pred HHHHHhhCCccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----------------------CCCCCccchhhh
Q psy7711 262 LQVLHNVFPRFADKTDDGSYMQQDANECWTEMVRMLKTALPGENEE----------------------GQDSAKSSFIEQ 319 (577)
Q Consensus 262 ~~~l~~~~~~f~~~~~~~~~~QqDA~Efl~~ll~~L~~~~~~~~~~----------------------~~~~~~~~~i~~ 319 (577)
...+....+.|. ++.|||.+||+.+++|.+|+.+...... .......+++.+
T Consensus 321 ~~~~~~~a~~~~------g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~~~~~~~~~~~~~~~s~i~d 394 (842)
T KOG1870|consen 321 RTSLASFASEFS------GYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQEVAAEVWDYHLKRNRSVIVD 394 (842)
T ss_pred hhhhhhcccccc------CcccccchhhhhHHhhhhhHHhhccCCcCcccccccccchhhhhhHHHHHhhhhhccceeee
Confidence 999999999898 9999999999999999999998777442 112455678999
Q ss_pred ccceEEeEEEEcCCCCCCCCCcccccceeeeeccC
Q psy7711 320 YFYTIMDTELKCSESETEPPTKGTESFQQLSCYIT 354 (577)
Q Consensus 320 lF~g~~~~~~~C~~c~~~~~s~~~e~f~~L~l~i~ 354 (577)
+|.|.+.+.+.|..|++ ++.++++|..|+++++
T Consensus 395 ~~~~~~~S~~~c~~C~~--~svt~d~f~~Lslp~p 427 (842)
T KOG1870|consen 395 LFDGTYKSTLQCPTCGK--VSVTFDPFGYLSLPLP 427 (842)
T ss_pred eecceecccccCccCCC--ceEEeeccccccccCC
Confidence 99999999999999997 4788999998888886
No 36
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=1.6e-30 Score=247.68 Aligned_cols=187 Identities=18% Similarity=0.165 Sum_probs=132.2
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCCCCCccchhhhccceEEeEEEEcCCCCCCCCCcccccceeeeeccCC--Cccc
Q psy7711 282 MQQDANECWTEMVRMLKTALPGENEEGQDSAKSSFIEQYFYTIMDTELKCSESETEPPTKGTESFQQLSCYITT--DVKY 359 (577)
Q Consensus 282 ~QqDA~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~i~~lF~g~~~~~~~C~~c~~~~~s~~~e~f~~L~l~i~~--~~~~ 359 (577)
.|||++||+.+|++.+...+- .+.-++|.|-....-.. +...|.++.|+++... ...+
T Consensus 22 ~q~D~~e~~~~l~~~~~~~~~------------~~~~~~~~~g~~~~~~~--------~~~~e~~l~l~ip~~~~~~~~t 81 (241)
T cd02670 22 EQQDPEEFFNFITDKLLMPLL------------EPKVDIIHGGKKDQDDD--------KLVNERLLQIPVPDDDDGGGIT 81 (241)
T ss_pred HhcCHHHHHHHHHHHHhhhhh------------hHHHHHHhcCccccccc--------cccccceEEeecccCCCCCcCC
Confidence 589999999999999886432 22445565532111110 2345888888877643 3568
Q ss_pred hhHHHhhhhhhhhhccCcCCCCCceEEEEEEeccCCCceEEEEEEEEEeccccccccccccccCCccccccccCCHHHHh
Q psy7711 360 MLPGLKNKLQDQITKRSPSLDRDAVYVKTSKVSRLPAYLTIQFVRFFYKEKERINAKVLKDIKFPIEFDAYELCTPELQA 439 (577)
Q Consensus 360 l~~~l~~~~~e~i~~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~ 439 (577)
|++||+.|+++++ |.++|++|+|||+||.|+. +...|++..|.||..|||.+|+.+...+
T Consensus 82 LedcLe~~~~~e~------------------i~~lP~vLiIhLKRF~~~~--~~~~Kl~~~I~fP~~Ldl~~~~~~~~~~ 141 (241)
T cd02670 82 LEQCLEQYFNNSV------------------FAKAPSCLIICLKRYGKTE--GKAQKMFKKILIPDEIDIPDFVADDPRA 141 (241)
T ss_pred HHHHHHHHhchhh------------------hhhCCCeEEEEEEccccCC--CcceeCCcEECCCCcCCchhhccccccc
Confidence 9999999998776 9999999999999999987 6679999999999999999997654210
Q ss_pred ccccchHHHHHHHHHHHHHHHhhhhcccCCCchhhhhhhcccccCCccccccccccccchhcccCCCCCCCCCCCCCCCc
Q psy7711 440 KLAPMREKFKIAEEKEAFEEFRTQYVFISIPMDEIYVRFGQKIYAPVGDRIQDFGVKSTEFQSRGQGSSPGRVDIGSNNS 519 (577)
Q Consensus 440 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (577)
.- . .+..... .+. ...+......
T Consensus 142 ~~----------------------~--~~~~~~~-------------------------~~~--------~~~~~~~~~~ 164 (241)
T cd02670 142 CS----------------------K--CQLECRV-------------------------CYD--------DKDFSPTCGK 164 (241)
T ss_pred cc----------------------c--ccccccc-------------------------ccc--------cccccCCCCC
Confidence 00 0 0000000 000 0001112234
Q ss_pred eeEEEeEEEEeecCCCCCCceEEEEECCC------------CcEEEEeCCcceecChh
Q psy7711 520 GYYTLQAVLTHKGRTSSSGHYVAWVKKPN------------GTWIKCDDDKVYPISEE 565 (577)
Q Consensus 520 ~~Y~L~aVI~H~G~s~~~GHY~a~vr~~~------------~~W~~~nD~~V~~v~~~ 565 (577)
..|+|+|||+|.|.++++|||+||+|... +.|++|||..|+.+...
T Consensus 165 ~~Y~L~aVi~H~G~s~~sGHYva~vr~~~~~~~~~~~~~~~~~W~~FDD~~v~~~~~~ 222 (241)
T cd02670 165 FKLSLCSAVCHRGTSLETGHYVAFVRYGSYSLTETDNEAYNAQWVFFDDMADRDGVSN 222 (241)
T ss_pred eEEEEEEEEEeCCCCCCCcCeEEEEECCcccccccccCCCCCeEEEecCccccccccc
Confidence 68999999999998899999999999863 79999999998877544
No 37
>KOG1871|consensus
Probab=99.96 E-value=6.9e-29 Score=239.01 Aligned_cols=303 Identities=20% Similarity=0.272 Sum_probs=222.5
Q ss_pred ccccccCCCCCchhHHHHHHHhhccHHHHHHHHhhcCCCCCCCCChhhHHHHHHHHHHHHhcCC----------------
Q psy7711 188 YLPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDNMK---------------- 251 (577)
Q Consensus 188 ~~~~GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~l~~~L~~Lf~~l~~~~---------------- 251 (577)
..|+|+.|-||-|||||+||+|..|++|.+.+...+............++.++..+..+...-.
T Consensus 26 i~Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~~~~~~~~~~stp~lda~~~~~~df~n~~~~k~~r~N~~~~~~~~ 105 (420)
T KOG1871|consen 26 IDPRGSINKCNICFMNSILQALLYCSPFYNLLELIKRADGTVKEGSTPLLDASRPASSDFNNDSDAKLPRKNSLRVPEHV 105 (420)
T ss_pred cCCccccccceeEeeHHHHHHHHhCccHHHHHHhhhhhcCceecccchhHHHHHHHHhhccccchhhhhhhccCCccccc
Confidence 5689999999999999999999999999999876663332222334456667666666544210
Q ss_pred -----------CCCCCChHHHHHHHHhhCCccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC--------------
Q psy7711 252 -----------ISPSISPFIMLQVLHNVFPRFADKTDDGSYMQQDANECWTEMVRMLKTALPGENE-------------- 306 (577)
Q Consensus 252 -----------~~~~i~P~~~~~~l~~~~~~f~~~~~~~~~~QqDA~Efl~~ll~~L~~~~~~~~~-------------- 306 (577)
...++.|..+.-.+.. .+.|. ..+ .|.|.||.|||..+||.||+++-....
T Consensus 106 ~~~ses~~~d~~~dav~~d~~~~~l~t-~~~~e-~~~--~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~e~t~~~~ 181 (420)
T KOG1871|consen 106 VEKSESNKSDLQGDAVKPDPIYLDLLT-MSRFE-SLQ--VGKQEDAEEFLLDNLDFLHEESSEVPTELVPPNDEFTPRGL 181 (420)
T ss_pred cchhhhhhhcccCccccCCchhhhccc-CCchh-hcc--ccccccHHHHHHHHHhhhhHHHHhhhhhhcCCccccccccc
Confidence 0112333222222221 13332 111 479999999999999999999644411
Q ss_pred ----------------------------------CCCCCCccchhhhccceEEeEEEEcCCCCCCCCCcccccceeeeec
Q psy7711 307 ----------------------------------EGQDSAKSSFIEQYFYTIMDTELKCSESETEPPTKGTESFQQLSCY 352 (577)
Q Consensus 307 ----------------------------------~~~~~~~~~~i~~lF~g~~~~~~~C~~c~~~~~s~~~e~f~~L~l~ 352 (577)
........++|.++|+|.+++.+.-..... +.+.++|..|.++
T Consensus 182 i~~~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~~nke---S~tlqPF~tlqld 258 (420)
T KOG1871|consen 182 INNGNLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQPSNKE---SATLQPFFTLQLD 258 (420)
T ss_pred ccccccccccchhhcccccCchhhhcCCcccCccCCCCCcccCcHHHhhccccccceecccccc---ccccCccceeeee
Confidence 011234567899999999999888765543 6889999999999
Q ss_pred cCC-CccchhHHHhhhhhhhhh-ccCcCCCCCceEEEEEEeccCCCceEEEEEEEEEeccccccccccccccCCcccccc
Q psy7711 353 ITT-DVKYMLPGLKNKLQDQIT-KRSPSLDRDAVYVKTSKVSRLPAYLTIQFVRFFYKEKERINAKVLKDIKFPIEFDAY 430 (577)
Q Consensus 353 i~~-~~~~l~~~l~~~~~e~i~-~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~V~fp~~Ldl~ 430 (577)
|.. ...++.+++..+...++. .+...-+....+.++..+.+||++|++||+||.|.. ++...|+.+.+.||-.|.+.
T Consensus 259 iq~~~i~sv~~ales~~~re~lp~~st~s~~eV~~s~q~~leklp~vlilhlkrF~ye~-tgg~~k~~K~i~~~~~l~i~ 337 (420)
T KOG1871|consen 259 IQSEKIHSVQDALESLVARESLPGYSTKSGQEVEASSQTTLEKLPPVLILHLKRFVYEK-TGGARKLGKKIEYPWTLKIS 337 (420)
T ss_pred eeccccCCHHHHhhccChhhcccceecCCCCeechhhhhhHhhcchhhhhhhhHHHHHh-ccchhhhchhhhccceeeec
Confidence 954 667888998887775554 455557888889999999999999999999999996 46689999999999998875
Q ss_pred ccCC-HHHHhccccchHHHHHHHHHHHHHHHhhhhcccCCCchhhhhhhcccccCCccccccccccccchhcccCCCCCC
Q psy7711 431 ELCT-PELQAKLAPMREKFKIAEEKEAFEEFRTQYVFISIPMDEIYVRFGQKIYAPVGDRIQDFGVKSTEFQSRGQGSSP 509 (577)
Q Consensus 431 ~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 509 (577)
.-|- ..++.
T Consensus 338 ~~~~s~gvk~---------------------------------------------------------------------- 347 (420)
T KOG1871|consen 338 KNCFSQGLKI---------------------------------------------------------------------- 347 (420)
T ss_pred hhhhccccch----------------------------------------------------------------------
Confidence 3221 11100
Q ss_pred CCCCCCCCCceeEEEeEEEEeecCCCCCCceEEEEECC-CCcEEEEeCCcceecChhhhhccCC
Q psy7711 510 GRVDIGSNNSGYYTLQAVLTHKGRTSSSGHYVAWVKKP-NGTWIKCDDDKVYPISEEEVLKLSG 572 (577)
Q Consensus 510 ~~~~~~~~~~~~Y~L~aVI~H~G~s~~~GHY~a~vr~~-~~~W~~~nD~~V~~v~~~~V~~~~~ 572 (577)
. ..+....|+|.|||.|+|.++..|||..-+.+. .+.|+.+||..|..+..++|++-.+
T Consensus 348 ---~-~~~~~~~yks~~vvyhtgtsatvghYl~dv~~s~~~gw~rIDD~~i~~v~q~dv~~~t~ 407 (420)
T KOG1871|consen 348 ---R-ILIATRPYKSLAVVYHTGTSATVGHYLEDVSRSVPSGWQRIDDALILFVAQEDVEKVTG 407 (420)
T ss_pred ---h-hhccccccceEEEEEecccccccCceEEeeeecccCceeEeccceeeeccHhhhccccC
Confidence 0 012345799999999999999999999999875 7799999999999999999988443
No 38
>KOG2026|consensus
Probab=99.86 E-value=4.4e-21 Score=184.43 Aligned_cols=278 Identities=22% Similarity=0.244 Sum_probs=201.3
Q ss_pred ccccccCCCCCchhHHHHHHHhhccHHHHHHHHhhcCCCCCCCCChhhHHHHHHHHHHHHhcCC-CCCCCChHHHHHHHH
Q psy7711 188 YLPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDNMK-ISPSISPFIMLQVLH 266 (577)
Q Consensus 188 ~~~~GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~l~~~L~~Lf~~l~~~~-~~~~i~P~~~~~~l~ 266 (577)
.+.+||.|+-++=|.|+++|+|.+.+++|++++..... .+....+...|..+...+|..+ ....++|.++++++.
T Consensus 132 pG~VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~~n~----~d~~~~lv~rl~~l~rklw~~r~fk~hvSphe~lqaV~ 207 (442)
T KOG2026|consen 132 PGFVGLNNIKANDYANAVLQALSHVVPLRNYFLLEENY----FDNLTELVQRLGELIRKLWNPRNFKGHVSPHEFLQAVM 207 (442)
T ss_pred eeeeccchhhhHHHHHHHHHHHhccchhhhhhcccccc----cchhHHHHHHHHHHHHHhcChhhhcccCCHHHHHHHHH
Confidence 45699999999999999999999999999999865431 2334567777888888888763 356899999999987
Q ss_pred hhC-CccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCCCccchhhhccceEEeEEEEcCC--CCCCCCCccc
Q psy7711 267 NVF-PRFADKTDDGSYMQQDANECWTEMVRMLKTALPGENEEGQDSAKSSFIEQYFYTIMDTELKCSE--SETEPPTKGT 343 (577)
Q Consensus 267 ~~~-~~f~~~~~~~~~~QqDA~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~i~~lF~g~~~~~~~C~~--c~~~~~s~~~ 343 (577)
... ..|. .+.|-|+-|||.+||+.||..++... ...++|...|.|.++....-.. .+.+......
T Consensus 208 ~~s~k~f~------i~~q~DpveFlswllntlhs~l~~~k------~~~SIi~~~fqG~~ri~k~~~~~~~~~~~~~i~~ 275 (442)
T KOG2026|consen 208 KLSKKRFR------IGQQSDPVEFLSWLLNTLHSDLRGSK------KASSIIHKSFQGEVRIVKEKQGEASENENKEISV 275 (442)
T ss_pred HHhhhhee------cCCCCCHHHHHHHHHHHHHHHhCCCC------CchhHhhHhhcceEEeeeeccccccccccceEEE
Confidence 653 3565 67999999999999999999998763 4568999999999976544332 1122223456
Q ss_pred ccceeeeeccCCCccc-------------hhHHHhhhhhhhhhccCcCCCCCceEEEEEEeccCCCceEEEEEEEEEecc
Q psy7711 344 ESFQQLSCYITTDVKY-------------MLPGLKNKLQDQITKRSPSLDRDAVYVKTSKVSRLPAYLTIQFVRFFYKEK 410 (577)
Q Consensus 344 e~f~~L~l~i~~~~~~-------------l~~~l~~~~~e~i~~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~ 410 (577)
-+|+.|.|++|...-. |.+-|+.|-.++.. ...+...+ ++..+.++|+||++|++||.-+.
T Consensus 276 ~~Fl~LtLDLP~~plfkD~~e~niiPQV~l~~lL~Kf~g~t~~----e~~~~~~~-~rf~l~k~P~ylifh~~rF~kNn- 349 (442)
T KOG2026|consen 276 MPFLYLTLDLPPPPLFKDVMEKNIIPQVALFDLLKKFDGETVT----EVVTPKLA-MRFRLTKLPRYLIFHMKRFKKNN- 349 (442)
T ss_pred EeeEEEEecCCCCCcccchhhhcccccchHHHHHHHhcCceee----eecchhhh-hheeeecCCceEEEEeeeccccC-
Confidence 7899999999753211 22223322211111 11111112 78899999999999999997554
Q ss_pred ccccccccccccCC-ccccccccCCHHHHhccccchHHHHHHHHHHHHHHHhhhhcccCCCchhhhhhhcccccCCcccc
Q psy7711 411 ERINAKVLKDIKFP-IEFDAYELCTPELQAKLAPMREKFKIAEEKEAFEEFRTQYVFISIPMDEIYVRFGQKIYAPVGDR 489 (577)
Q Consensus 411 ~~~~~Ki~~~V~fp-~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 489 (577)
..+.|+..-|+|| ..+|+.++..... .+
T Consensus 350 -~f~ekNpTl~~f~~~~~~~~~~~~~~~----------------------------------------------~~---- 378 (442)
T KOG2026|consen 350 -FFKEKNPTLVEFPYSEVDILHVLDRLK----------------------------------------------AV---- 378 (442)
T ss_pred -cccccCCceeeccCCccchhhhhhhcc----------------------------------------------cc----
Confidence 7789999999999 5677755422110 00
Q ss_pred ccccccccchhcccCCCCCCCCCCCCCCCceeEEEeEEEEeecCCCCCCceEEEEECC-CCcEEEEeCCcceecChhhh
Q psy7711 490 IQDFGVKSTEFQSRGQGSSPGRVDIGSNNSGYYTLQAVLTHKGRTSSSGHYVAWVKKP-NGTWIKCDDDKVYPISEEEV 567 (577)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~~GHY~a~vr~~-~~~W~~~nD~~V~~v~~~~V 567 (577)
...-..|.|+|=++|. ..-|||...++++ .++||..+|-.|++...+-|
T Consensus 379 --------------------------~~~~~~~~~~~N~i~~---~e~~~~riqi~~~~s~kW~eiqdl~v~e~~~qmi 428 (442)
T KOG2026|consen 379 --------------------------NHKVTQYSLVANAIHE---DEDGNFRIQIYDNSSEKWYEIQDLHVTERLPQMI 428 (442)
T ss_pred --------------------------cCccccccchhhhhcC---cccCceEEEEEeCCCcceEEecccchhhhhhHHH
Confidence 0011369999999997 4789999999985 78999999999998876654
No 39
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.84 E-value=6e-21 Score=147.58 Aligned_cols=70 Identities=30% Similarity=0.530 Sum_probs=67.9
Q ss_pred EEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEe---cCCccCCc-cccccccCCCceEEEecc
Q psy7711 12 YIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMC---KGATLKND-EWDNFKLSNGSMVLLMGS 81 (577)
Q Consensus 12 ~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~---~g~~l~d~-~l~~~~~~~~~~i~l~gs 81 (577)
|+|+|||+|+.|+|+|++++||++||++|+++|||||+|||||| +|+.++|+ +|++|+|++|++||||||
T Consensus 1 ~~i~vk~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lmGs 74 (74)
T cd01813 1 VPVIVKWGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMMGT 74 (74)
T ss_pred CEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEEeC
Confidence 57999999999999999999999999999999999999999996 89999999 999999999999999997
No 40
>KOG1275|consensus
Probab=99.74 E-value=2.5e-17 Score=173.65 Aligned_cols=311 Identities=18% Similarity=0.168 Sum_probs=200.3
Q ss_pred ccccCCCCCchhHHHHHHHhhccHHHHHHHHhhcCCCCCCCCChhhHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHhhC
Q psy7711 190 PAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDNMKISPSISPFIMLQVLHNVF 269 (577)
Q Consensus 190 ~~GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~l~~~L~~Lf~~l~~~~~~~~i~P~~~~~~l~~~~ 269 (577)
.+||.--+-+-|.||+||.|+.+|++|..++++. +....|++|.|.-||.+|..+. .+......|+.+++..-
T Consensus 499 yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~H~------C~~e~CL~CELGFLF~Ml~~S~-G~~Cqa~NFlraf~t~~ 571 (1118)
T KOG1275|consen 499 YAGLETDIPNSYCNAMIQLLYFLPPIRSIVLRHI------CTKEFCLLCELGFLFTMLDSST-GDPCQANNFLRAFRTNP 571 (1118)
T ss_pred eeccCCCCchHHHHHHHHHHHhccHHHHHHHcCc------cchhHHHHHHHHHHHHHHhhhc-CCccchhHHHHHHhhCh
Confidence 4778888888899999999999999999998763 4567899999999999999986 56788889998887643
Q ss_pred Cccc------cccCC----CCCCCCCHHHHHHHHHHHHHHhCC--------CCCCCCCCCCccchhhhccceEEeEEEEc
Q psy7711 270 PRFA------DKTDD----GSYMQQDANECWTEMVRMLKTALP--------GENEEGQDSAKSSFIEQYFYTIMDTELKC 331 (577)
Q Consensus 270 ~~f~------~~~~~----~~~~QqDA~Efl~~ll~~L~~~~~--------~~~~~~~~~~~~~~i~~lF~g~~~~~~~C 331 (577)
..-+ ..... ....-|||.-|.....+...+-.. ..............+.+.|+..+.....|
T Consensus 572 ~a~~LG~vl~d~~~~~~~~~~~liq~~~~~~~set~~~~d~~~~~~~~~s~~~~~~~~~vn~~~~l~q~F~~~~e~~~~C 651 (1118)
T KOG1275|consen 572 EASALGLVLSDTQISGTVNDDVLIQDAEGFISSETSRHLDCQDCRGLQQSESVDGESFKVNYAPVLQQSFCQEIEKSLRC 651 (1118)
T ss_pred HhhhhcccccchhhccccchHHHhhhhhhccchhhhhhhhHHHhhhhhhhhcccCceeeecchhHHHHHhhhHHHHhhhc
Confidence 2111 00000 011223444332222211110000 00112223445678999999999999999
Q ss_pred CCCCCCCCCcccccceeeeeccCCC--------ccchhHHHhhhhh--hhhhccCcCCCCCceEEEEEEeccCCCceEEE
Q psy7711 332 SESETEPPTKGTESFQQLSCYITTD--------VKYMLPGLKNKLQ--DQITKRSPSLDRDAVYVKTSKVSRLPAYLTIQ 401 (577)
Q Consensus 332 ~~c~~~~~s~~~e~f~~L~l~i~~~--------~~~l~~~l~~~~~--e~i~~~c~~c~~~~~~~k~~~i~~lP~~L~i~ 401 (577)
..|+.+....+ ....+.+..+.. .....+.|+..+. +.....|+.|........+..+..||.+|.|.
T Consensus 652 g~C~~~~~~~k--~l~~~~lsyp~~~~id~~~~~~~F~~iL~R~l~l~kn~~~~C~~C~k~ep~~q~~~vr~LPd~L~in 729 (1118)
T KOG1275|consen 652 GECGDEKQKSK--SLLRKVLSYPNVLLIDTLAKSNNFVEILKRSLSLFKNKQAWCETCTKPEPTSQKKNVRSLPDCLSIN 729 (1118)
T ss_pred ccccchhhhhh--hhhheeecCCCccchhhcccccchHHHhhhhhhcccccccccccccCCCCcccccccccCcceeeee
Confidence 99998644333 222223322221 1112223333222 33446899999999999999999999999999
Q ss_pred EEEEEEecccc--ccccccccccCCccccccccCCHHHHhccccchHHHHHHHHHHHHHHHhhhhcccCCCchhhhhhhc
Q psy7711 402 FVRFFYKEKER--INAKVLKDIKFPIEFDAYELCTPELQAKLAPMREKFKIAEEKEAFEEFRTQYVFISIPMDEIYVRFG 479 (577)
Q Consensus 402 l~Rf~~~~~~~--~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (577)
..-+....... ...|....|.+|+.+.+..-......-
T Consensus 730 ~~~~~~~~~~~~a~q~~~~~~vWLP~~~~~~~~k~~~~~v---------------------------------------- 769 (1118)
T KOG1275|consen 730 TCLNVHELVDFWARQNKLLEDVWLPEWFHMIISKNKAQLV---------------------------------------- 769 (1118)
T ss_pred eeccchhhhhhHHHhhccccccccchheeEEEecccceee----------------------------------------
Confidence 87765443322 344667889999988874321111000
Q ss_pred ccccCCccccccccccccchhcccCCCCCCCCCCCCCCCceeEEEeEEEEeecCCCCCCceEEEEECC---------CCc
Q psy7711 480 QKIYAPVGDRIQDFGVKSTEFQSRGQGSSPGRVDIGSNNSGYYTLQAVLTHKGRTSSSGHYVAWVKKP---------NGT 550 (577)
Q Consensus 480 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~~GHY~a~vr~~---------~~~ 550 (577)
.. .++. ..+...+...+.-..|+|.|+|.|.|.+-+.+|.+++|+.. +.+
T Consensus 770 --------~~-----------~s~~--~~~~~~~~d~~~~~vYeL~a~V~~I~d~~~e~~lVs~Ikv~~~~~~~~~~dsq 828 (1118)
T KOG1275|consen 770 --------ST-----------ISDL--DVSPLPDYDEPSAVVYELDAMVHAIGDNENEVNLVSPIKVLRPYHVIKPDDSQ 828 (1118)
T ss_pred --------ee-----------eccc--cCCCCccccCCceEEEEeeeEEEEeccCCCccceEEEEEccCcccccCcCcce
Confidence 00 0000 00001122233447899999999999988999999999952 469
Q ss_pred EEEEeCCcceecChhhhhcc
Q psy7711 551 WIKCDDDKVYPISEEEVLKL 570 (577)
Q Consensus 551 W~~~nD~~V~~v~~~~V~~~ 570 (577)
||.|||--|++++++|.+..
T Consensus 829 WylFNDfLV~~ite~EAl~~ 848 (1118)
T KOG1275|consen 829 WYLFNDFLVSEITEEEALHF 848 (1118)
T ss_pred eEEEcceeeeeCChHHheEe
Confidence 99999999999999998764
No 41
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.67 E-value=1.5e-16 Score=123.41 Aligned_cols=70 Identities=27% Similarity=0.371 Sum_probs=67.5
Q ss_pred EEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEecc
Q psy7711 12 YIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGS 81 (577)
Q Consensus 12 ~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs 81 (577)
|+|+|||+|+.+.++|++++||.+||++|++.+|+|+++|||+|+|+.|.|+ +|++|||++|++|+|||.
T Consensus 1 i~i~vk~~g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~~ 71 (71)
T cd01812 1 IRVRVKHGGESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLED 71 (71)
T ss_pred CEEEEEECCEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEecC
Confidence 5799999999999999999999999999999999999999999999999999 999999999999999983
No 42
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.65 E-value=3.3e-16 Score=120.40 Aligned_cols=69 Identities=13% Similarity=0.107 Sum_probs=65.6
Q ss_pred eEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEe
Q psy7711 11 TYIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLM 79 (577)
Q Consensus 11 ~~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~ 79 (577)
+|+|+||. .|+.+.++|++++||++||++|++..|+|+++|||+|+|+.|+|+ +|++|||++|++|||-
T Consensus 1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELY 71 (73)
T ss_pred CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEE
Confidence 58999998 478899999999999999999999999999999999999999999 9999999999999984
No 43
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.59 E-value=2.2e-15 Score=117.45 Aligned_cols=70 Identities=19% Similarity=0.295 Sum_probs=66.2
Q ss_pred EEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEecc
Q psy7711 12 YIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGS 81 (577)
Q Consensus 12 ~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs 81 (577)
|+|+||. .|+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ +|++|||++|++|+||..
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVR 72 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEc
Confidence 6799995 678899999999999999999999999999999999999999999 999999999999999954
No 44
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.57 E-value=6.4e-15 Score=116.12 Aligned_cols=71 Identities=28% Similarity=0.483 Sum_probs=67.1
Q ss_pred EEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCC--CCCCceEEecCCccCCc-cccccccCCCceEEEeccc
Q psy7711 12 YIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGV--QIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGSK 82 (577)
Q Consensus 12 ~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v--~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs~ 82 (577)
|+|+||+ .|+.+.++|++++||.+||++|++.+|+ |+++|||+|+|+.|+|+ +|++|||++|++|+||.++
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~ 75 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSK 75 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEec
Confidence 6799996 5788999999999999999999999999 99999999999999999 9999999999999999775
No 45
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.56 E-value=5.2e-15 Score=115.24 Aligned_cols=68 Identities=19% Similarity=0.282 Sum_probs=64.4
Q ss_pred EEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEec
Q psy7711 12 YIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMG 80 (577)
Q Consensus 12 ~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~g 80 (577)
|+|.||.. +.+.++|++++||.+||++|++.+|+|+++|+|+|.|+.|+|+ +|++|+|+++++|+|+.
T Consensus 1 mqi~vk~~-~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~ 69 (74)
T cd01793 1 MQLFVRAQ-NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAG 69 (74)
T ss_pred CEEEEECC-CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEE
Confidence 67999975 6789999999999999999999999999999999999999999 99999999999999974
No 46
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.55 E-value=1.5e-14 Score=113.45 Aligned_cols=72 Identities=18% Similarity=0.280 Sum_probs=67.0
Q ss_pred EEEEEEeC-CeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCccccccccCCCceEEEecccc
Q psy7711 12 YIVKVKWG-KETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKNDEWDNFKLSNGSMVLLMGSKE 83 (577)
Q Consensus 12 ~~i~vk~~-~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~~l~~~~~~~~~~i~l~gs~~ 83 (577)
|+|+||.. |+.++|+|++++||++||++|++.+|+|+++|||+|+|+.|+|++|++|||++|++|+||-+-.
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~~L~~~gi~~~~~i~l~~~~~ 74 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSGKLQDLGLGDGSKLTLVPTVE 74 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCCcHHHcCCCCCCEEEEEeecc
Confidence 88999974 6889999999999999999999999999999999999999987799999999999999996643
No 47
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.54 E-value=1.2e-14 Score=113.58 Aligned_cols=72 Identities=13% Similarity=0.248 Sum_probs=65.2
Q ss_pred EEEEEEeC-CeE-EEEE-eCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEecccc
Q psy7711 12 YIVKVKWG-KET-FEVD-VDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGSKE 83 (577)
Q Consensus 12 ~~i~vk~~-~~~-~~~~-v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs~~ 83 (577)
|+|+||.. |++ +.++ +++++||.+||++|++.+|+|+++|||+|+|+.|+|+ +|++|||++|++|+||-..+
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 68999974 554 6895 8999999999999999999999999999999999999 99999999999999996543
No 48
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.53 E-value=1.5e-14 Score=110.57 Aligned_cols=65 Identities=20% Similarity=0.267 Sum_probs=61.5
Q ss_pred EEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEe
Q psy7711 15 KVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLM 79 (577)
Q Consensus 15 ~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~ 79 (577)
+||. +|+.+.++|++++||.+||++|++..|+|+++|||+|+|+.|+|+ +|.+|+|++|++|+||
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~ 68 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVI 68 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEE
Confidence 5665 568899999999999999999999999999999999999999999 9999999999999998
No 49
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.52 E-value=2.6e-14 Score=111.13 Aligned_cols=68 Identities=24% Similarity=0.436 Sum_probs=64.7
Q ss_pred EEEEEEeC-CeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEe
Q psy7711 12 YIVKVKWG-KETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLM 79 (577)
Q Consensus 12 ~~i~vk~~-~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~ 79 (577)
|+|+||+. |+.+.+++++++||.+||++|++.+|+|+++|||+|+|+.|+|+ +|++||+++|++|+|+
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~ 70 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLV 70 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEE
Confidence 67999985 57899999999999999999999999999999999999999999 9999999999999987
No 50
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.51 E-value=2.9e-14 Score=112.71 Aligned_cols=71 Identities=25% Similarity=0.291 Sum_probs=67.0
Q ss_pred EEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceE--EecCCccCCc-cccccccCCCceEEEeccc
Q psy7711 12 YIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKV--MCKGATLKND-EWDNFKLSNGSMVLLMGSK 82 (577)
Q Consensus 12 ~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl--~~~g~~l~d~-~l~~~~~~~~~~i~l~gs~ 82 (577)
|+|+||. .|+.+.++|++++||.+||++|++.+|+|+++||| +|+|+.|+|+ +|++|||++|++|+|+-++
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~ 77 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQN 77 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEc
Confidence 8899997 57889999999999999999999999999999999 8999999999 9999999999999999765
No 51
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.50 E-value=3.6e-14 Score=109.28 Aligned_cols=69 Identities=14% Similarity=0.066 Sum_probs=60.7
Q ss_pred EEEEEEeC-CeE--EEEEeCCCCCHHHHHHHHHHHhC--CCCCCceEEecCCccCCc-cccccc--cCCCceEEEec
Q psy7711 12 YIVKVKWG-KET--FEVDVDTDEEPMLFKAQLYELTG--VQIDRQKVMCKGATLKND-EWDNFK--LSNGSMVLLMG 80 (577)
Q Consensus 12 ~~i~vk~~-~~~--~~~~v~~~~tv~~lk~~i~~~~~--v~~~~qkl~~~g~~l~d~-~l~~~~--~~~~~~i~l~g 80 (577)
|+|+||.. +++ ++|+++++.||.+||++|++..+ .|+++|||||+||+|+|+ +|++++ +++|.+|||+-
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 78999984 466 45666899999999999999874 558999999999999999 999996 99999999984
No 52
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.50 E-value=5.1e-14 Score=116.00 Aligned_cols=71 Identities=20% Similarity=0.345 Sum_probs=67.1
Q ss_pred ceEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEec
Q psy7711 10 HTYIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMG 80 (577)
Q Consensus 10 ~~~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~g 80 (577)
+.|+|+||. .|+.+.++|++++||.+||++|++..|+|+++|||+|.|+.|+|+ +|++|+|++|++|+|+-
T Consensus 26 ~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~stL~l~~ 98 (103)
T cd01802 26 DTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNISEGCTLKLVL 98 (103)
T ss_pred CCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 359999997 568899999999999999999999999999999999999999999 99999999999999974
No 53
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.47 E-value=6.9e-14 Score=108.01 Aligned_cols=69 Identities=20% Similarity=0.243 Sum_probs=63.4
Q ss_pred EEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEec
Q psy7711 12 YIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMG 80 (577)
Q Consensus 12 ~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~g 80 (577)
|+|+||.......|+++++.||.+||++|++.+|+|+++|+|+|+|+.|+|+ +|++||+++|++|+|+-
T Consensus 1 ~~i~vk~~~g~~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~ 70 (71)
T cd01808 1 IKVTVKTPKDKEEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVI 70 (71)
T ss_pred CEEEEEcCCCCEEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEE
Confidence 4688997554568999999999999999999999999999999999999999 99999999999999873
No 54
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.47 E-value=7.4e-14 Score=108.74 Aligned_cols=67 Identities=16% Similarity=0.211 Sum_probs=62.7
Q ss_pred EEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEec
Q psy7711 14 VKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMG 80 (577)
Q Consensus 14 i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~g 80 (577)
|.||. .|+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ +|++|||++|++|+|+-
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~ 69 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNL 69 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 56785 568899999999999999999999999999999999999999999 99999999999999973
No 55
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.47 E-value=7.1e-14 Score=109.32 Aligned_cols=65 Identities=18% Similarity=0.361 Sum_probs=61.7
Q ss_pred eCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEeccc
Q psy7711 18 WGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGSK 82 (577)
Q Consensus 18 ~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs~ 82 (577)
-.|+.++|+|++++||.+||++|++.+|||+++|||+|+|+.|+|+ +|++|+|++|++|+||...
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~ 70 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKE 70 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEec
Confidence 3789999999999999999999999999999999999999999999 9999999999999999653
No 56
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.47 E-value=8.1e-14 Score=107.37 Aligned_cols=67 Identities=27% Similarity=0.364 Sum_probs=62.6
Q ss_pred EEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEec
Q psy7711 14 VKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMG 80 (577)
Q Consensus 14 i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~g 80 (577)
|.||. .|+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ +|++|||++|++|+|+.
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~ 69 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVR 69 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 45775 578899999999999999999999999999999999999999999 99999999999999974
No 57
>PTZ00044 ubiquitin; Provisional
Probab=99.46 E-value=1.3e-13 Score=108.24 Aligned_cols=69 Identities=16% Similarity=0.330 Sum_probs=65.5
Q ss_pred EEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEec
Q psy7711 12 YIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMG 80 (577)
Q Consensus 12 ~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~g 80 (577)
|+|.||. .|+.+.++|++++||.+||++|++.+|+|+++|||+|+|+.|+|+ +|++|++++|++|+|+-
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~ 71 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVL 71 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEE
Confidence 6799997 678899999999999999999999999999999999999999999 99999999999999984
No 58
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.45 E-value=1.9e-13 Score=105.18 Aligned_cols=64 Identities=25% Similarity=0.487 Sum_probs=60.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEeccc
Q psy7711 19 GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGSK 82 (577)
Q Consensus 19 ~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs~ 82 (577)
.|+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ +|++|||++|++|+|+..+
T Consensus 4 ~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 4 SGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp TSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred CCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence 467899999999999999999999999999999999999999888 9999999999999998754
No 59
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.44 E-value=1.9e-13 Score=105.28 Aligned_cols=65 Identities=28% Similarity=0.427 Sum_probs=59.5
Q ss_pred EEEEe--CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc--cccccccCCCceEEE
Q psy7711 14 VKVKW--GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND--EWDNFKLSNGSMVLL 78 (577)
Q Consensus 14 i~vk~--~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~--~l~~~~~~~~~~i~l 78 (577)
|+||. +|+.+.|+|++++||.+||++|++.+|||+++|+|+|+|+.|+|+ +|++|||++|++|+|
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l 69 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVL 69 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEE
Confidence 45664 457799999999999999999999999999999999999999987 699999999999986
No 60
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.44 E-value=2.6e-13 Score=106.70 Aligned_cols=70 Identities=23% Similarity=0.441 Sum_probs=65.8
Q ss_pred EEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEecc
Q psy7711 12 YIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGS 81 (577)
Q Consensus 12 ~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs 81 (577)
|+|+||. .|+.+.++|+++.||.+||++|++.+|+|+++|||+|.|+.|.|+ +|++|++++|++|+|+-.
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~ 72 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLA 72 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEE
Confidence 6799997 578899999999999999999999999999999999999999999 999999999999999854
No 61
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.43 E-value=2.4e-13 Score=106.91 Aligned_cols=70 Identities=19% Similarity=0.320 Sum_probs=65.7
Q ss_pred EEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEecc
Q psy7711 12 YIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGS 81 (577)
Q Consensus 12 ~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs 81 (577)
|+|+||. .|+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ +|++|++++|++|+|+-.
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEE
Confidence 6799997 468899999999999999999999999999999999999999999 999999999999999843
No 62
>KOG0005|consensus
Probab=99.41 E-value=2.1e-13 Score=94.52 Aligned_cols=68 Identities=22% Similarity=0.439 Sum_probs=63.9
Q ss_pred EEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEe
Q psy7711 12 YIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLM 79 (577)
Q Consensus 12 ~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~ 79 (577)
|.|+||. .++.++|+++++++|..+|++|+++.||||.+|||+|.|+++.|| +-..|++.-|+.++++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 5689997 568899999999999999999999999999999999999999999 9999999999999985
No 63
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.35 E-value=1.4e-12 Score=98.82 Aligned_cols=63 Identities=25% Similarity=0.487 Sum_probs=59.8
Q ss_pred EEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCc
Q psy7711 12 YIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGS 74 (577)
Q Consensus 12 ~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~ 74 (577)
|+|.||+.++.+.++|+++.||.+||++|+..+|+|+++|||+|+|+.|.|+ +|+++||++|+
T Consensus 1 ~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLDGTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECCceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 6799999887889999999999999999999999999999999999999999 99999999985
No 64
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.32 E-value=3e-12 Score=129.68 Aligned_cols=73 Identities=23% Similarity=0.416 Sum_probs=68.3
Q ss_pred EEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhC---CCCCCceEEecCCccCCc-cccccccCCCceEEEeccccC
Q psy7711 12 YIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTG---VQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGSKEE 84 (577)
Q Consensus 12 ~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~---v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs~~~ 84 (577)
|+|+||. .|++|.|+|++++||.+||++|++.+| +|+++|||||+||+|+|+ +|++|+|++|++|+||.++..
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k~k 78 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSKPK 78 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEeccCC
Confidence 7899996 568899999999999999999999999 999999999999999999 999999999999999977643
No 65
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.29 E-value=3.1e-12 Score=96.98 Aligned_cols=52 Identities=15% Similarity=0.234 Sum_probs=48.1
Q ss_pred CCCCHHHHHHHHHHHh--CCC-CCCceEEecCCccCCc-cccccccCCCceEEEec
Q psy7711 29 TDEEPMLFKAQLYELT--GVQ-IDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMG 80 (577)
Q Consensus 29 ~~~tv~~lk~~i~~~~--~v~-~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~g 80 (577)
.++||.+||++|++.+ |++ +++|||+|+||+|+|+ +|++|||++|++|+|+.
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 4589999999999996 475 9999999999999999 99999999999999984
No 66
>KOG0010|consensus
Probab=99.27 E-value=6.5e-12 Score=126.58 Aligned_cols=73 Identities=25% Similarity=0.372 Sum_probs=69.9
Q ss_pred eEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEecccc
Q psy7711 11 TYIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGSKE 83 (577)
Q Consensus 11 ~~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs~~ 83 (577)
.++|+||+.+.+++|.|..+.||.+||+.|...+++|+|+|+|||+||+|||+ +|..+||++|.|||||....
T Consensus 15 ~irV~Vkt~~dk~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 15 LIRVTVKTPKDKYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQ 88 (493)
T ss_pred eeEEEEecCCcceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccC
Confidence 59999999999999999999999999999999999999999999999999999 99999999999999996654
No 67
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.21 E-value=2.9e-11 Score=93.58 Aligned_cols=60 Identities=18% Similarity=0.188 Sum_probs=54.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccC-Cc-cccccccC-CCceEEEe
Q psy7711 19 GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLK-ND-EWDNFKLS-NGSMVLLM 79 (577)
Q Consensus 19 ~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~-d~-~l~~~~~~-~~~~i~l~ 79 (577)
.|.++.++|+++.||++||++|++.+|+||++|+| |.|+.|. |+ +|++||++ +|++++|-
T Consensus 11 ~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~ 73 (75)
T cd01799 11 HTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLY 73 (75)
T ss_pred CCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEE
Confidence 56778899999999999999999999999999999 9998885 55 99999999 88999874
No 68
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.19 E-value=4.7e-11 Score=91.84 Aligned_cols=66 Identities=29% Similarity=0.456 Sum_probs=61.4
Q ss_pred EEeC-CeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEecc
Q psy7711 16 VKWG-KETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGS 81 (577)
Q Consensus 16 vk~~-~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs 81 (577)
||+. |+.+.++++++.||.+||++|+..+|+|+++|+|+|+|+.|+|+ +|.++++++|++|++++.
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~~ 69 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVLR 69 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEEC
Confidence 6664 78889999999999999999999999999999999999999988 999999999999999863
No 69
>KOG0011|consensus
Probab=99.19 E-value=2.4e-11 Score=116.12 Aligned_cols=73 Identities=23% Similarity=0.405 Sum_probs=69.5
Q ss_pred EEEEEEeCC-eEEEEEeCCCCCHHHHHHHHHHHhC--CCCCCceEEecCCccCCc-cccccccCCCceEEEeccccC
Q psy7711 12 YIVKVKWGK-ETFEVDVDTDEEPMLFKAQLYELTG--VQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGSKEE 84 (577)
Q Consensus 12 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~--v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs~~~ 84 (577)
|+|+||.-+ .+|+|+|.+++||.++|++|++..| .|+++|||||.||+|+|+ ++..|+|+++..|.+|.|+..
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~k 77 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKDK 77 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecCc
Confidence 689999854 8899999999999999999999999 999999999999999999 999999999999999999874
No 70
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.13 E-value=8.9e-11 Score=91.78 Aligned_cols=59 Identities=19% Similarity=0.183 Sum_probs=56.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc--cccccccCCCceEEEec
Q psy7711 22 TFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND--EWDNFKLSNGSMVLLMG 80 (577)
Q Consensus 22 ~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~--~l~~~~~~~~~~i~l~g 80 (577)
...++|++++||.+||.+|.+.++|||++|||++.|+.|.|| +|++|||-+|+.|+|..
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Lli 76 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKA 76 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEe
Confidence 457889999999999999999999999999999999999988 99999999999999994
No 71
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.09 E-value=4.6e-10 Score=90.10 Aligned_cols=75 Identities=12% Similarity=0.225 Sum_probs=68.6
Q ss_pred CCCCceEEEEEEeC-CeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEec
Q psy7711 6 GKPPHTYIVKVKWG-KETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMG 80 (577)
Q Consensus 6 ~~~~~~~~i~vk~~-~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~g 80 (577)
++....|.|.|+.. |+.+.+.|.+++|+..||.++++..|+|+++|+|+|.|+.|.++ ++.+|++.+|++|.++-
T Consensus 6 ~~~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l 82 (87)
T cd01763 6 GEISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVML 82 (87)
T ss_pred CCCCCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEE
Confidence 34456799999975 67789999999999999999999999999999999999999999 99999999999999974
No 72
>KOG0003|consensus
Probab=99.09 E-value=3e-11 Score=94.78 Aligned_cols=68 Identities=18% Similarity=0.331 Sum_probs=63.7
Q ss_pred EEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEe
Q psy7711 12 YIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLM 79 (577)
Q Consensus 12 ~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~ 79 (577)
|.+.+...|++..++|++++||..+|+.|....|+||++|+|+|+|++|+|. +|++||+..-+||+++
T Consensus 2 ~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~ 70 (128)
T KOG0003|consen 2 QIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (128)
T ss_pred cEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhh
Confidence 4455567889999999999999999999999999999999999999999999 9999999999999987
No 73
>KOG0004|consensus
Probab=99.01 E-value=1.7e-10 Score=98.34 Aligned_cols=68 Identities=19% Similarity=0.347 Sum_probs=63.8
Q ss_pred EEEEEEeCC-eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEe
Q psy7711 12 YIVKVKWGK-ETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLM 79 (577)
Q Consensus 12 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~ 79 (577)
|.|.|+... +....+|.+++||..+|++|+...|||+++|+|+|.|+.|.|+ +|++|+|+..++|+|+
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~ 70 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEE
Confidence 468888765 6788999999999999999999999999999999999999999 9999999999999998
No 74
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=98.96 E-value=5.7e-10 Score=90.53 Aligned_cols=73 Identities=8% Similarity=0.064 Sum_probs=60.7
Q ss_pred ceEEEEEEeC-CeEE-EEEeCCCCCHHHHHHHHHHH-----hCCC--CCCceEEecCCccCCc-cccccc------cCCC
Q psy7711 10 HTYIVKVKWG-KETF-EVDVDTDEEPMLFKAQLYEL-----TGVQ--IDRQKVMCKGATLKND-EWDNFK------LSNG 73 (577)
Q Consensus 10 ~~~~i~vk~~-~~~~-~~~v~~~~tv~~lk~~i~~~-----~~v~--~~~qkl~~~g~~l~d~-~l~~~~------~~~~ 73 (577)
+.+.|+.+.. |..+ ...+++++||.+||++|++. .|+| +++|||||.||+|+|+ +|++|+ +...
T Consensus 3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~ 82 (113)
T cd01814 3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGV 82 (113)
T ss_pred ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCc
Confidence 3577888864 4555 67888999999999999944 4566 9999999999999999 999999 7777
Q ss_pred ceEEEeccc
Q psy7711 74 SMVLLMGSK 82 (577)
Q Consensus 74 ~~i~l~gs~ 82 (577)
.||||+--+
T Consensus 83 ~TmHvvlr~ 91 (113)
T cd01814 83 ITMHVVVQP 91 (113)
T ss_pred eEEEEEecC
Confidence 999998543
No 75
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.95 E-value=4.4e-09 Score=83.64 Aligned_cols=70 Identities=14% Similarity=0.234 Sum_probs=58.3
Q ss_pred EEEEEEeC--CeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEE-ecCC-----cc-CCc-cccccccCCCceEEEecc
Q psy7711 12 YIVKVKWG--KETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVM-CKGA-----TL-KND-EWDNFKLSNGSMVLLMGS 81 (577)
Q Consensus 12 ~~i~vk~~--~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~-~~g~-----~l-~d~-~l~~~~~~~~~~i~l~gs 81 (577)
++|.|++. ....+..++++.||.+||++|+..+|+||+.|+|. +.|+ .| +|+ +|+.||+++|.+|+++-+
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD~ 81 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVIDV 81 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEeC
Confidence 55677765 34456679999999999999999999999999995 7776 45 455 899999999999999854
No 76
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=98.90 E-value=1.2e-08 Score=94.65 Aligned_cols=176 Identities=17% Similarity=0.222 Sum_probs=93.1
Q ss_pred CCCCCchhHHHHHHHhhccHHHHHHHHhhcCCCCCCCCChhhHHHHHHHHHHHHhc---CCCCCCCChHHHHHHHHhhCC
Q psy7711 194 NNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDN---MKISPSISPFIMLQVLHNVFP 270 (577)
Q Consensus 194 ~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~l~~~L~~Lf~~l~~---~~~~~~i~P~~~~~~l~~~~~ 270 (577)
.|.-|.||+-++|-+|.++..+++.+-+... ...++...|..-|.+... ......+........-
T Consensus 6 ~N~~aLCWLDciLsaLVh~~~Lk~~~~~~~~-------~e~s~~~~L~~~Y~qa~~ll~~~q~~~~~~~~~~~~~----- 73 (275)
T PF15499_consen 6 KNSNALCWLDCILSALVHLESLKNAVTELCS-------KEESVFWRLFTKYNQANKLLHTCQLDGVKDDDCKKVP----- 73 (275)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHHhhhcc-------ccccHHHHHHHHHHHHHHHHHhhhhcCCCCcccccCc-----
Confidence 5888999999999999999999999854322 122444444444433211 0001111111100000
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCC----CCCCC--------CCCccchhhhccceEEeEEEEcCCCCCCC
Q psy7711 271 RFADKTDDGSYMQQDANECWTEMVRMLKTALPGE----NEEGQ--------DSAKSSFIEQYFYTIMDTELKCSESETEP 338 (577)
Q Consensus 271 ~f~~~~~~~~~~QqDA~Efl~~ll~~L~~~~~~~----~~~~~--------~~~~~~~i~~lF~g~~~~~~~C~~c~~~~ 338 (577)
...=.+|+..|..+-+.|-..+... -+... .-.....+.++|...+.=...|..||...
T Consensus 74 ---------~~~l~~ae~~Ln~vR~~iF~~LqPkL~C~LG~~ESPVFAlPLLLk~d~~~E~lF~~sf~WeFeC~~Cg~~~ 144 (275)
T PF15499_consen 74 ---------SEILAKAETCLNEVRMEIFIQLQPKLRCKLGDMESPVFALPLLLKLDPWIEKLFLYSFSWEFECSQCGHKY 144 (275)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHHhCccCCCCCCCccCcHHHhHHHHhcchHHHhHhheeeEEEEEccccCChh
Confidence 0000123334444333333333222 11000 02345678999999999999999999842
Q ss_pred C---CcccccceeeeeccCCCccchhHHHhhhhhhhhhccCcCCCCCceEEEEEEeccCCCceEEEEE
Q psy7711 339 P---TKGTESFQQLSCYITTDVKYMLPGLKNKLQDQITKRSPSLDRDAVYVKTSKVSRLPAYLTIQFV 403 (577)
Q Consensus 339 ~---s~~~e~f~~L~l~i~~~~~~l~~~l~~~~~e~i~~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~ 403 (577)
. ..+..+|..+. + +=.- ++-....-|.+|+...+ .++..+.++|+++.+|++
T Consensus 145 ~~R~~K~L~TFtnv~---p-dwhP--------LnA~h~~pCn~C~~ksQ-~rkMvlekv~~vfmLHFV 199 (275)
T PF15499_consen 145 QNRCTKTLVTFTNVI---P-DWHP--------LNAVHFGPCNSCNSKSQ-RRKMVLEKVPPVFMLHFV 199 (275)
T ss_pred hhhheeeecccCCCC---C-CCCc--------ccccccCCCcccCChHH-hHhhhhhcCchhhhhhhh
Confidence 1 11122222211 1 1000 12223346899988764 455789999999999975
No 77
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.78 E-value=2.2e-08 Score=80.55 Aligned_cols=72 Identities=14% Similarity=0.229 Sum_probs=58.7
Q ss_pred eEEEEEEeCCe---EEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEec---C----CccCCc--cccccccCCCceEEE
Q psy7711 11 TYIVKVKWGKE---TFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCK---G----ATLKND--EWDNFKLSNGSMVLL 78 (577)
Q Consensus 11 ~~~i~vk~~~~---~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~---g----~~l~d~--~l~~~~~~~~~~i~l 78 (577)
+++|.|.+... ..+..++.+.||.+||.+|+..+|+||+.|+|.+. + ..+.|| +|..||+++|+.|++
T Consensus 1 ~v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V 80 (87)
T PF14560_consen 1 VVKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHV 80 (87)
T ss_dssp EEEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEE
T ss_pred CEEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEE
Confidence 47889998764 78899999999999999999999999999999865 1 224454 999999999999999
Q ss_pred eccc
Q psy7711 79 MGSK 82 (577)
Q Consensus 79 ~gs~ 82 (577)
+-+.
T Consensus 81 ~D~~ 84 (87)
T PF14560_consen 81 VDTN 84 (87)
T ss_dssp EE-T
T ss_pred EeCC
Confidence 8553
No 78
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=98.69 E-value=6e-08 Score=75.07 Aligned_cols=68 Identities=12% Similarity=0.259 Sum_probs=62.0
Q ss_pred EEEEEEeC-CeEEEEEeCCCCCHHHHHHHHHHHhCCCC-CCceEEecCCccCCc-cccccccCCCceEEEe
Q psy7711 12 YIVKVKWG-KETFEVDVDTDEEPMLFKAQLYELTGVQI-DRQKVMCKGATLKND-EWDNFKLSNGSMVLLM 79 (577)
Q Consensus 12 ~~i~vk~~-~~~~~~~v~~~~tv~~lk~~i~~~~~v~~-~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~ 79 (577)
|+|+|+.. |+.+.+.|.+++++..|++++.+..|+|+ +..+|+|.|+.|.++ ++.++|+.+|++|.++
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~ 71 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVI 71 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEE
Confidence 68999986 47889999999999999999999999999 999999999999988 9999999999999886
No 79
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=98.61 E-value=3.7e-08 Score=100.02 Aligned_cols=62 Identities=31% Similarity=0.563 Sum_probs=47.5
Q ss_pred CcccccCCCCcchhhHHHhhcCCHHHHHHHHhhhCCCC-------------CCC------CchhHHHHHHHHHhhhcccC
Q psy7711 112 PAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQ-------------PGS------NPAQSITASLRDLYECMDNM 172 (577)
Q Consensus 112 ~~gl~n~g~~cy~ns~~q~l~~~p~l~~~~~~~~~~~~-------------~~~------~p~~~~~~~l~~l~~~~~~~ 172 (577)
|+||.|+||||||||+||||+.+|+||+++..+..... ... .....+...++.++..|...
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s 80 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS 80 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 79999999999999999999999999999988763211 000 01235778899998888755
Q ss_pred C
Q psy7711 173 K 173 (577)
Q Consensus 173 ~ 173 (577)
+
T Consensus 81 ~ 81 (343)
T cd02666 81 N 81 (343)
T ss_pred C
Confidence 4
No 80
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.57 E-value=1.2e-07 Score=74.22 Aligned_cols=66 Identities=17% Similarity=0.244 Sum_probs=53.6
Q ss_pred EEEEEeCC-eEE-EEEe-CCCCCHHHHHHHHHHHhC-CCCCCceEE--ecCCccCCc-cccccccCCCceEEE
Q psy7711 13 IVKVKWGK-ETF-EVDV-DTDEEPMLFKAQLYELTG-VQIDRQKVM--CKGATLKND-EWDNFKLSNGSMVLL 78 (577)
Q Consensus 13 ~i~vk~~~-~~~-~~~v-~~~~tv~~lk~~i~~~~~-v~~~~qkl~--~~g~~l~d~-~l~~~~~~~~~~i~l 78 (577)
.|.++..+ +.+ .+++ +++.||.+||.+|+...+ ++++||+|. ++|+.|+|+ +|.++|+++|++|++
T Consensus 2 ~i~~~~~~~k~~~~~~~~~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 2 EILDAKRSDKPIGKLKVSSGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred eeeccccCcCceeecccCCCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 45666544 443 2444 488999999999999976 589999996 789999999 999999999999876
No 81
>PLN02560 enoyl-CoA reductase
Probab=98.47 E-value=3.3e-07 Score=91.02 Aligned_cols=82 Identities=16% Similarity=0.187 Sum_probs=63.0
Q ss_pred EEEEEEeC-CeEE---EEEeCCCCCHHHHHHHHHHHhCC-CCCCceEEec---C----CccCCc-cccccccCCCceEEE
Q psy7711 12 YIVKVKWG-KETF---EVDVDTDEEPMLFKAQLYELTGV-QIDRQKVMCK---G----ATLKND-EWDNFKLSNGSMVLL 78 (577)
Q Consensus 12 ~~i~vk~~-~~~~---~~~v~~~~tv~~lk~~i~~~~~v-~~~~qkl~~~---g----~~l~d~-~l~~~~~~~~~~i~l 78 (577)
|+|+|+.. |+.+ .|+|++++||++||++|++..++ +++||||++. | +.|+|+ +|+++|+++|++|++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 56777753 4444 79999999999999999999987 8999999972 3 378888 999999999999877
Q ss_pred eccccCCCCCCccccccccc
Q psy7711 79 MGSKEEDSMKEPVVKPKFVE 98 (577)
Q Consensus 79 ~gs~~~~~~~~~~~~~~~~e 98 (577)
= |+-+.-.-.++|+=
T Consensus 81 k-----DLGpQi~wrtVF~~ 95 (308)
T PLN02560 81 K-----DLGPQVSYRTLFFF 95 (308)
T ss_pred E-----eCCCcCchhhhHHH
Confidence 4 22223344556554
No 82
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=4.9e-07 Score=93.57 Aligned_cols=144 Identities=20% Similarity=0.262 Sum_probs=82.0
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEe--cCCc---cCCc-cccccc--cCCCceEEEeccccCC---------
Q psy7711 23 FEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMC--KGAT---LKND-EWDNFK--LSNGSMVLLMGSKEED--------- 85 (577)
Q Consensus 23 ~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~--~g~~---l~d~-~l~~~~--~~~~~~i~l~gs~~~~--------- 85 (577)
+.+..+...|+.+|-+++-...-.|.+.-||-+ .+.. +-++ .+..+. ..+|.-++.+.-.+..
T Consensus 159 ~~~s~ss~~tlrdl~e~vmnaf~~psD~FRLw~v~~~~~~~r~~~~s~f~~~~~~a~~~~~l~~~t~~el~~d~s~lll~ 238 (823)
T COG5560 159 VPHSASSHGTLRDLSERVMNAFVDPSDDFRLWDVVPEIMGLRLGLDSFFRRYRVLASDGRVLHPLTRLELFEDRSVLLLS 238 (823)
T ss_pred ceeeccccchHHHHHHHHHHHhcCcccceeEEEecCCcccccccCHHHHhhcchhccchhhhcccHHHHhccchhhhHHh
Confidence 356777789999999999999999999777754 4422 2222 333332 2233333332111110
Q ss_pred -CCCCccccccccccchhhH-h-hhcCCCCcccccCCCCcchhhHHHhhcCCHHHHHHHHh--hhCCCC------CCCCc
Q psy7711 86 -SMKEPVVKPKFVEDMNESE-R-AVSLDLPAGLNNLGNTCYMNAVIQCLKTVPELRKALKN--LKGGLQ------PGSNP 154 (577)
Q Consensus 86 -~~~~~~~~~~~~ed~~~~~-~-~~~~~~~~gl~n~g~~cy~ns~~q~l~~~p~l~~~~~~--~~~~~~------~~~~p 154 (577)
+..-|... +.....+. + .....-.+||.|+||||||||++|||-++++|+++|.. |....+ ..+.-
T Consensus 239 kit~np~wl---vdsi~~~~n~sinke~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~v 315 (823)
T COG5560 239 KITRNPDWL---VDSIVDDHNRSINKEAGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSV 315 (823)
T ss_pred hhccCCccc---eeeecchhhhhHHhhccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhH
Confidence 00011110 00000000 0 00112568999999999999999999999999999953 443332 23444
Q ss_pred hhHHHHHHHHHhhhc
Q psy7711 155 AQSITASLRDLYECM 169 (577)
Q Consensus 155 ~~~~~~~l~~l~~~~ 169 (577)
+..+...+..+|++.
T Consensus 316 AsayadLik~ly~~~ 330 (823)
T COG5560 316 ASAYADLIKQLYDGN 330 (823)
T ss_pred HHHHHHHHHHHhCcc
Confidence 556666666666433
No 83
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=98.37 E-value=3.6e-07 Score=92.65 Aligned_cols=59 Identities=31% Similarity=0.575 Sum_probs=46.5
Q ss_pred ccccCCCCcchhhHHHhhcCCHHHHHHHHhhhCCC-CCCCCchhHHHHHHHHHhhhcccC
Q psy7711 114 GLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGL-QPGSNPAQSITASLRDLYECMDNM 172 (577)
Q Consensus 114 gl~n~g~~cy~ns~~q~l~~~p~l~~~~~~~~~~~-~~~~~p~~~~~~~l~~l~~~~~~~ 172 (577)
||.|+||||||||++|||+++|+|++++..+.... .....|..++...+..+...+...
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~ 60 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKLADGLLSG 60 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccCCCcCCccccHHHHHHHHHHHhcCC
Confidence 89999999999999999999999999987643222 223456777888888888766644
No 84
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.36 E-value=1.2e-06 Score=68.50 Aligned_cols=71 Identities=15% Similarity=0.228 Sum_probs=44.8
Q ss_pred CCceEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEec--C-Ccc--CCc-cccccccCCCceEEE
Q psy7711 8 PPHTYIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCK--G-ATL--KND-EWDNFKLSNGSMVLL 78 (577)
Q Consensus 8 ~~~~~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~--g-~~l--~d~-~l~~~~~~~~~~i~l 78 (577)
|...|-|.|+...+.+.|++++++|+.+|+++|.+.+++|++.|.|... + ..+ .++ +|+++||+.|+-|+|
T Consensus 1 ~~~~milRvrS~dG~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL 77 (80)
T PF11543_consen 1 MASSMILRVRSKDGMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYL 77 (80)
T ss_dssp -----EEEEE-SSEEEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE-
T ss_pred CCccEEEEEECCCCCEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEE
Confidence 4456889999999999999999999999999999999999999887532 1 234 244 999999999999986
No 85
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=98.27 E-value=1.3e-06 Score=88.27 Aligned_cols=59 Identities=49% Similarity=0.921 Sum_probs=47.2
Q ss_pred ccccCCCCcchhhHHHhhcCCHHHHHHHHhhhCCCCCCCCchhHHHHHHHHHhhhcccC
Q psy7711 114 GLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDNM 172 (577)
Q Consensus 114 gl~n~g~~cy~ns~~q~l~~~p~l~~~~~~~~~~~~~~~~p~~~~~~~l~~l~~~~~~~ 172 (577)
||.|+||||||||++|+|+++|+|++.+..+.............+...++.++..+...
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~ 59 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNALRDLFDTMDKK 59 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhC
Confidence 89999999999999999999999999998766532222334567888899998877644
No 86
>KOG1873|consensus
Probab=98.24 E-value=2.5e-06 Score=90.16 Aligned_cols=137 Identities=28% Similarity=0.363 Sum_probs=106.2
Q ss_pred cchhHHHhhhhhhhhh-----ccCcCCCCC---------------------------ceEEEEEEeccCCCceEEEEEEE
Q psy7711 358 KYMLPGLKNKLQDQIT-----KRSPSLDRD---------------------------AVYVKTSKVSRLPAYLTIQFVRF 405 (577)
Q Consensus 358 ~~l~~~l~~~~~e~i~-----~~c~~c~~~---------------------------~~~~k~~~i~~lP~~L~i~l~Rf 405 (577)
-++..||.+|..-++. -.|+.|.+. ..+.|+..|..+|++|+|||+||
T Consensus 678 ~Svq~CL~nFT~~E~Ls~~N~~~CEnCtk~~n~~~r~k~~~n~~~sk~s~~es~~~~t~akk~~li~~aPpVltihlKrf 757 (877)
T KOG1873|consen 678 CSVQRCLKNFTKVEILSGDNKWACENCTKNLNLQRREKRGLNEDNSKYSFNESEYRNTYAKKKVLINKAPPVLTIHLKRF 757 (877)
T ss_pred ccHHHHHHhhhhhhhcccccchhhhhhhccccccchhhccCCCCcccccccchhhhhhhhheeeecccCCceeeehHhhh
Confidence 3466788888875554 258777541 01267788999999999999999
Q ss_pred EEeccccccccccccccCCccccccccCCHHHHhccccchHHHHHHHHHHHHHHHhhhhcccCCCchhhhhhhcccccCC
Q psy7711 406 FYKEKERINAKVLKDIKFPIEFDAYELCTPELQAKLAPMREKFKIAEEKEAFEEFRTQYVFISIPMDEIYVRFGQKIYAP 485 (577)
Q Consensus 406 ~~~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 485 (577)
.-+.. +...|.+.+|.|++.+|+.+|+...-+.
T Consensus 758 ~q~~~-~~~~k~~~h~~f~E~~dL~~~~~~rc~~---------------------------------------------- 790 (877)
T KOG1873|consen 758 FQDIR-GRLSKLNKHVDFKEFEDLLDYMDFRCSH---------------------------------------------- 790 (877)
T ss_pred hhhhh-chhhcccccchHHHHHHHHHHhhhhccc----------------------------------------------
Confidence 87754 5589999999999999998876432100
Q ss_pred ccccccccccccchhcccCCCCCCCCCCCCCCCceeEEEeEEEEeecCCCCCCceEEEEEC-------------------
Q psy7711 486 VGDRIQDFGVKSTEFQSRGQGSSPGRVDIGSNNSGYYTLQAVLTHKGRTSSSGHYVAWVKK------------------- 546 (577)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~~GHY~a~vr~------------------- 546 (577)
.....+..|+|.|||.|.|+ +.+|||++|+|.
T Consensus 791 ----------------------------l~~~~s~~Yrl~gvvehsgt-m~~ghyvayv~~~t~~~~~~~~~~~~~~sd~ 841 (877)
T KOG1873|consen 791 ----------------------------LDEPSSFVYRLAGVVEHSGT-MSYGHYVAYVRGGTFLDLSAPSNSKDFESDA 841 (877)
T ss_pred ----------------------------cCCcchhhhhhccceecccc-ccCCcchhhhhccchhhccCccccccchhcc
Confidence 00012447999999999996 999999999994
Q ss_pred --CCCcEEEEeCCcceecChhhhhcc
Q psy7711 547 --PNGTWIKCDDDKVYPISEEEVLKL 570 (577)
Q Consensus 547 --~~~~W~~~nD~~V~~v~~~~V~~~ 570 (577)
+.++||+..|+.|.++++++|++.
T Consensus 842 ~~~~~~Wy~iSDs~VrevS~d~vLks 867 (877)
T KOG1873|consen 842 GIPSGRWYYISDSIVREVSLDEVLKS 867 (877)
T ss_pred CCCCcceEEecchheecccHHHHhhh
Confidence 268999999999999999999863
No 87
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.19 E-value=5.2e-06 Score=67.18 Aligned_cols=68 Identities=12% Similarity=0.092 Sum_probs=58.1
Q ss_pred EEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-ccccccc-------CCCceEEEe
Q psy7711 12 YIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKL-------SNGSMVLLM 79 (577)
Q Consensus 12 ~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~-------~~~~~i~l~ 79 (577)
|-+.||..+.++=+++.+++||.+||+.|+..+.+||+.|+|+..+-+|.|+ +|+++|+ .+..+|-|.
T Consensus 3 vFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa 78 (119)
T cd01788 3 VFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLA 78 (119)
T ss_pred eEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEE
Confidence 5578889999999999999999999999999999999999998444668888 9999999 445555554
No 88
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=98.14 E-value=6.1e-06 Score=87.47 Aligned_cols=36 Identities=33% Similarity=0.416 Sum_probs=32.4
Q ss_pred CCcccccCCCCcchhhHHHhhcCCHHHHHHHHhhhC
Q psy7711 111 LPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKG 146 (577)
Q Consensus 111 ~~~gl~n~g~~cy~ns~~q~l~~~p~l~~~~~~~~~ 146 (577)
-..||.|+||||||||++|||+++|+|++++.....
T Consensus 118 G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~ 153 (440)
T cd02669 118 GFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYEN 153 (440)
T ss_pred CccCccCCCCchHHHHHHHHHHCCHHHHHHHhhccc
Confidence 468999999999999999999999999999986543
No 89
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=98.12 E-value=6.9e-06 Score=82.90 Aligned_cols=56 Identities=36% Similarity=0.568 Sum_probs=40.5
Q ss_pred CcccccCCCCcchhhHHHhhcCCHHHHHHHHhhhCCCCCCCCchhHHHHHHHHHhhh
Q psy7711 112 PAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYEC 168 (577)
Q Consensus 112 ~~gl~n~g~~cy~ns~~q~l~~~p~l~~~~~~~~~~~~~~~~p~~~~~~~l~~l~~~ 168 (577)
|+||.|+||||||||++|+|+++|+|++++........ ...+..++...++.+...
T Consensus 1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 56 (304)
T cd02661 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKD-CCNEGFCMMCALEAHVER 56 (304)
T ss_pred CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhh-ccCCcchHHHHHHHHHHH
Confidence 78999999999999999999999999998875433211 112334555666555543
No 90
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=98.09 E-value=3.6e-06 Score=86.05 Aligned_cols=57 Identities=26% Similarity=0.526 Sum_probs=44.7
Q ss_pred cccccCCCCcchhhHHHhhcCCHHHHHHHHhhhCCC-CCCCCchhHHHHHHHHHhhhc
Q psy7711 113 AGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGL-QPGSNPAQSITASLRDLYECM 169 (577)
Q Consensus 113 ~gl~n~g~~cy~ns~~q~l~~~p~l~~~~~~~~~~~-~~~~~p~~~~~~~l~~l~~~~ 169 (577)
.||.|+||||||||+||||+.+|+|++++....... .....+..++...++.++..+
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~~~~l~~l~~~l 58 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEF 58 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCccccccccCCccccHHHHHHHHHHHH
Confidence 599999999999999999999999999987754321 112345567788888888776
No 91
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=98.08 E-value=4.3e-06 Score=85.28 Aligned_cols=52 Identities=38% Similarity=0.538 Sum_probs=38.5
Q ss_pred ccccCCCCcchhhHHHhhcCCHHHHHHHHhhhCCCCCCCCchhHHHHHHHHHhhh
Q psy7711 114 GLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYEC 168 (577)
Q Consensus 114 gl~n~g~~cy~ns~~q~l~~~p~l~~~~~~~~~~~~~~~~p~~~~~~~l~~l~~~ 168 (577)
||.|+||||||||+||||+.+|+|++.+.++..... .+...+...++.+...
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~~---~~~~~~~~~L~~lf~~ 52 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRL---GDSQSVMKKLQLLQAH 52 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCcccc---CCcchHHHHHHHHHHH
Confidence 899999999999999999999999999987764311 1223344455555443
No 92
>KOG4248|consensus
Probab=98.07 E-value=4.2e-06 Score=91.68 Aligned_cols=69 Identities=17% Similarity=0.276 Sum_probs=63.9
Q ss_pred EEEEEEeCC-eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEecc
Q psy7711 12 YIVKVKWGK-ETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGS 81 (577)
Q Consensus 12 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs 81 (577)
..|+||+.. ...++.|+...||..||..|...++|+.+.|||||.|++|.|| ++.+|+| +|.+|||+--
T Consensus 3 ~~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlver 73 (1143)
T KOG4248|consen 3 PNVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVER 73 (1143)
T ss_pred cceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeecc
Confidence 348999876 7779999999999999999999999999999999999999999 9999999 9999999844
No 93
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=2.7e-05 Score=74.28 Aligned_cols=63 Identities=33% Similarity=0.529 Sum_probs=46.6
Q ss_pred cCCCCcccccCCCCcchhhHHHhhcCCHHHHHHHH-----hhhCCCCCCCCchhHHHHHHHHHhhhcc
Q psy7711 108 SLDLPAGLNNLGNTCYMNAVIQCLKTVPELRKALK-----NLKGGLQPGSNPAQSITASLRDLYECMD 170 (577)
Q Consensus 108 ~~~~~~gl~n~g~~cy~ns~~q~l~~~p~l~~~~~-----~~~~~~~~~~~p~~~~~~~l~~l~~~~~ 170 (577)
....|.||.|+|||||||+++|||..+.+|...++ ++-..-.|.+.+..........+++.+.
T Consensus 67 dn~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~ 134 (415)
T COG5533 67 DNLPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPG 134 (415)
T ss_pred cccCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhccc
Confidence 44589999999999999999999999999987543 2223334556666666666777776544
No 94
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=98.02 E-value=2.6e-06 Score=86.59 Aligned_cols=36 Identities=50% Similarity=0.778 Sum_probs=32.8
Q ss_pred CCCcccccCCCCcchhhHHHhhcCCHHHHHHHHhhh
Q psy7711 110 DLPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLK 145 (577)
Q Consensus 110 ~~~~gl~n~g~~cy~ns~~q~l~~~p~l~~~~~~~~ 145 (577)
.-.+||.|+||||||||++|||+.+|+|++.+.++.
T Consensus 22 ~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~ 57 (332)
T cd02671 22 LPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLV 57 (332)
T ss_pred CCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhh
Confidence 368899999999999999999999999999887664
No 95
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=98.01 E-value=4e-06 Score=82.53 Aligned_cols=61 Identities=33% Similarity=0.648 Sum_probs=44.5
Q ss_pred CcccccCCCCcchhhHHHhhcCCHHHHHHHHhhh----CCCCCCCCchhHHHHHHHHHhhhcccC
Q psy7711 112 PAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLK----GGLQPGSNPAQSITASLRDLYECMDNM 172 (577)
Q Consensus 112 ~~gl~n~g~~cy~ns~~q~l~~~p~l~~~~~~~~----~~~~~~~~p~~~~~~~l~~l~~~~~~~ 172 (577)
|+||.|.|||||+||++|+|+++|++++.+.... ............+...++.+...++..
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 65 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSS 65 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSS
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhh
Confidence 6899999999999999999999999999998651 011112334456777888888776644
No 96
>KOG0944|consensus
Probab=98.01 E-value=2.7e-05 Score=81.69 Aligned_cols=67 Identities=28% Similarity=0.381 Sum_probs=54.2
Q ss_pred CCCcccccCCCCcchhhHHHhhcCCHHHHHHHHhh-hCCCCCCCCchhHHHHHHHHHhhhcccCCCCC
Q psy7711 110 DLPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNL-KGGLQPGSNPAQSITASLRDLYECMDNMKISP 176 (577)
Q Consensus 110 ~~~~gl~n~g~~cy~ns~~q~l~~~p~l~~~~~~~-~~~~~~~~~p~~~~~~~l~~l~~~~~~~~~~~ 176 (577)
+.-+||.|+||+||+|||+|+|+.+|++...+... .--.....+|..++.+++.++...|...+.+.
T Consensus 305 pgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~~~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~ 372 (763)
T KOG0944|consen 305 PGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQERIFNCYPKDPTNDFNCQLAKLLHGMLSGKYSK 372 (763)
T ss_pred CCccceeecCcchhHHHHHHHheecccHHHhhccccceeecCCCCcchhHHHHHHHHHHHhhcCcccC
Confidence 35679999999999999999999999998777543 21123467899999999999999988776544
No 97
>KOG1865|consensus
Probab=98.01 E-value=3.1e-06 Score=87.32 Aligned_cols=59 Identities=29% Similarity=0.457 Sum_probs=43.3
Q ss_pred hcCCCCcccccCCCCcchhhHHHhhcCCHHHHHHHHhhhCCCCCCCCchhHHHHHHHHHh
Q psy7711 107 VSLDLPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLY 166 (577)
Q Consensus 107 ~~~~~~~gl~n~g~~cy~ns~~q~l~~~p~l~~~~~~~~~~~~~~~~p~~~~~~~l~~l~ 166 (577)
+...+++||.|+||+||+|+++|||..+|+|..++....+... ..+...++.+.++...
T Consensus 103 ~~~~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~-C~~~~~C~lc~~q~hi 161 (545)
T KOG1865|consen 103 RPAAVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRS-CHRAKFCMLCTFQAHI 161 (545)
T ss_pred ccccCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhh-ccccCeeeehHHHHHH
Confidence 3566899999999999999999999999999999987665321 2233344444444443
No 98
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=97.98 E-value=6.4e-06 Score=83.96 Aligned_cols=59 Identities=31% Similarity=0.457 Sum_probs=43.6
Q ss_pred ccccCCCCcchhhHHHhhcCCHHHHHHHHhhhCCCC------CCCC--chhHHHHHHHHHhhhcccC
Q psy7711 114 GLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQ------PGSN--PAQSITASLRDLYECMDNM 172 (577)
Q Consensus 114 gl~n~g~~cy~ns~~q~l~~~p~l~~~~~~~~~~~~------~~~~--p~~~~~~~l~~l~~~~~~~ 172 (577)
||.|+||||||||+||+|+.+|+|++.+........ +... ....+...++.++..|+..
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~ 67 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFG 67 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhC
Confidence 899999999999999999999999999976543211 0011 1246777888888777643
No 99
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=97.94 E-value=8.1e-06 Score=83.67 Aligned_cols=58 Identities=31% Similarity=0.545 Sum_probs=45.0
Q ss_pred CcccccCCCCcchhhHHHhhcCCHHHHHHHHhhhCCCCCCCCchhHHHHHHHHHhhhccc
Q psy7711 112 PAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDN 171 (577)
Q Consensus 112 ~~gl~n~g~~cy~ns~~q~l~~~p~l~~~~~~~~~~~~~~~~p~~~~~~~l~~l~~~~~~ 171 (577)
.+||.|+||||||||+||+|+++|+|++.+..+... ....+..++...++.++..+..
T Consensus 2 ~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~--~~~~~~~~~~~~l~~lf~~~~~ 59 (334)
T cd02659 2 YVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPT--EDDDDNKSVPLALQRLFLFLQL 59 (334)
T ss_pred CCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCc--ccCcccccHHHHHHHHHHHHHh
Confidence 379999999999999999999999999999876321 1223456677778888766553
No 100
>KOG0001|consensus
Probab=97.93 E-value=3.4e-05 Score=59.46 Aligned_cols=65 Identities=20% Similarity=0.417 Sum_probs=60.8
Q ss_pred eCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEeccc
Q psy7711 18 WGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGSK 82 (577)
Q Consensus 18 ~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs~ 82 (577)
..|+.+.+++.+..++..+|.+|....|+|+++|++.+.|+.|.|+ ++.+|+|..+.++.|+.+.
T Consensus 7 ~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~ 72 (75)
T KOG0001|consen 7 LDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSL 72 (75)
T ss_pred cCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEec
Confidence 4568889999999999999999999999999999999999999999 9999999999999998664
No 101
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=97.92 E-value=5.3e-06 Score=82.64 Aligned_cols=30 Identities=57% Similarity=0.986 Sum_probs=28.9
Q ss_pred ccccCCCCcchhhHHHhhcCCHHHHHHHHh
Q psy7711 114 GLNNLGNTCYMNAVIQCLKTVPELRKALKN 143 (577)
Q Consensus 114 gl~n~g~~cy~ns~~q~l~~~p~l~~~~~~ 143 (577)
||.|+||||||||+||||+++|+|++++..
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~ 30 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE 30 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH
Confidence 899999999999999999999999999876
No 102
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=97.88 E-value=3.6e-05 Score=57.18 Aligned_cols=62 Identities=19% Similarity=0.365 Sum_probs=56.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEec
Q psy7711 19 GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMG 80 (577)
Q Consensus 19 ~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~g 80 (577)
.+....+.++++.|+.+||.+|.+.+|+++++|+|.+.|+.+++. .+..+++.+|+.|+++.
T Consensus 6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 6 DGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 356778889899999999999999999999999999999999888 77799999999999873
No 103
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=97.79 E-value=0.00013 Score=60.91 Aligned_cols=72 Identities=11% Similarity=0.170 Sum_probs=51.8
Q ss_pred eEEEEEEe-CCe-EEEEEeCCCCCHHHHHHHHHHHh-------CCCCCCceEEecCCccCCc-cccccccCCCc------
Q psy7711 11 TYIVKVKW-GKE-TFEVDVDTDEEPMLFKAQLYELT-------GVQIDRQKVMCKGATLKND-EWDNFKLSNGS------ 74 (577)
Q Consensus 11 ~~~i~vk~-~~~-~~~~~v~~~~tv~~lk~~i~~~~-------~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~------ 74 (577)
.|.|+.+. .|. ...+.+++++||.+||+.|...- -..++..||||.||+|.|. +|.++++..|.
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~ 81 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPT 81 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--E
T ss_pred eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCE
Confidence 36667765 455 56899999999999999999652 2346789999999999999 99999999887
Q ss_pred eEEEeccc
Q psy7711 75 MVLLMGSK 82 (577)
Q Consensus 75 ~i~l~gs~ 82 (577)
+|||+-.+
T Consensus 82 vmHlvvrp 89 (111)
T PF13881_consen 82 VMHLVVRP 89 (111)
T ss_dssp EEEEEE-S
T ss_pred EEEEEecC
Confidence 46666544
No 104
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=97.79 E-value=1.3e-05 Score=77.93 Aligned_cols=32 Identities=50% Similarity=0.891 Sum_probs=30.2
Q ss_pred ccccCCCCcchhhHHHhhcCCHHHHHHHHhhh
Q psy7711 114 GLNNLGNTCYMNAVIQCLKTVPELRKALKNLK 145 (577)
Q Consensus 114 gl~n~g~~cy~ns~~q~l~~~p~l~~~~~~~~ 145 (577)
||.|+||||||||++|+|+++|++++.+....
T Consensus 1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~~ 32 (240)
T cd02662 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL 32 (240)
T ss_pred CCcCCCCccHHHHHHHHHHCCHHHHHHHHHHH
Confidence 89999999999999999999999999988765
No 105
>KOG3493|consensus
Probab=97.52 E-value=4.6e-05 Score=54.52 Aligned_cols=67 Identities=15% Similarity=0.153 Sum_probs=54.8
Q ss_pred EEEEEE-eCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEE
Q psy7711 12 YIVKVK-WGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLL 78 (577)
Q Consensus 12 ~~i~vk-~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l 78 (577)
+.|.+- ..|++..|...+++||+|||+.|+..||-.+++-.|---+.+++|. +|++|.+.+|..+-|
T Consensus 2 iev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lel 70 (73)
T KOG3493|consen 2 IEVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLEL 70 (73)
T ss_pred ceehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEE
Confidence 345554 3577889999999999999999999999999977665334677888 999999999987755
No 106
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=97.38 E-value=0.00075 Score=50.20 Aligned_cols=69 Identities=13% Similarity=0.166 Sum_probs=59.6
Q ss_pred EEEEEE-eCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEec--C---CccCCc-cccccccCCCceEEEecc
Q psy7711 12 YIVKVK-WGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCK--G---ATLKND-EWDNFKLSNGSMVLLMGS 81 (577)
Q Consensus 12 ~~i~vk-~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~--g---~~l~d~-~l~~~~~~~~~~i~l~gs 81 (577)
|+|+|| |+.....+.|+|.++|..+|++|...-|++- .|+|-|. | ..|.+. +|++|||=....|.||-|
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT 76 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLET 76 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEec
Confidence 478998 7778899999999999999999999999887 8999873 3 346666 999999999999988854
No 107
>KOG0006|consensus
Probab=97.38 E-value=0.00029 Score=67.26 Aligned_cols=67 Identities=27% Similarity=0.466 Sum_probs=54.2
Q ss_pred EEEEEeCC----eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-ccc--ccccCCCceEEEe
Q psy7711 13 IVKVKWGK----ETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWD--NFKLSNGSMVLLM 79 (577)
Q Consensus 13 ~i~vk~~~----~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~--~~~~~~~~~i~l~ 79 (577)
.|-|..+| ..++|+|+.+..|.+||+.++.++|||+++.|+||.||.|.++ ++. +++.+.-..||++
T Consensus 2 ~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~l 75 (446)
T KOG0006|consen 2 IVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLL 75 (446)
T ss_pred eEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhcc
Confidence 35555554 3368999999999999999999999999999999999999999 888 5555555555544
No 108
>KOG3206|consensus
Probab=97.37 E-value=0.00059 Score=61.39 Aligned_cols=93 Identities=16% Similarity=0.200 Sum_probs=68.8
Q ss_pred EEEEEEeCCeE--EEEEeCCCCCHHHHHHHHHHHhCCCCCCceEE-ecC-----CccCCc--cccccccCCCceEEEecc
Q psy7711 12 YIVKVKWGKET--FEVDVDTDEEPMLFKAQLYELTGVQIDRQKVM-CKG-----ATLKND--EWDNFKLSNGSMVLLMGS 81 (577)
Q Consensus 12 ~~i~vk~~~~~--~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~-~~g-----~~l~d~--~l~~~~~~~~~~i~l~gs 81 (577)
++|.|.+.-.. .+..++.+.||.+||.+|+-++|.+++.++|- |+| ..|.|+ .|..|++.+|..||++-+
T Consensus 2 v~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~ 81 (234)
T KOG3206|consen 2 VRVVISSSLNDFRTEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDS 81 (234)
T ss_pred eEEEEecccccchhhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEec
Confidence 66777776555 46778899999999999999999999999994 555 356655 899999999999999988
Q ss_pred ccCCCCCCccccccccccchhhH
Q psy7711 82 KEEDSMKEPVVKPKFVEDMNESE 104 (577)
Q Consensus 82 ~~~~~~~~~~~~~~~~ed~~~~~ 104 (577)
....+.....+..+--..+++++
T Consensus 82 ~~~~~~~~~d~s~veky~iSee~ 104 (234)
T KOG3206|consen 82 NAQSISNTEDESIVEKYEISEED 104 (234)
T ss_pred CccccccccccccceeeecCHHH
Confidence 76634333333333333444444
No 109
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=97.34 E-value=0.00012 Score=73.82 Aligned_cols=20 Identities=60% Similarity=1.042 Sum_probs=19.2
Q ss_pred ccccCCCCcchhhHHHhhcC
Q psy7711 114 GLNNLGNTCYMNAVIQCLKT 133 (577)
Q Consensus 114 gl~n~g~~cy~ns~~q~l~~ 133 (577)
||.|+||||||||+||||+.
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~ 20 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF 20 (300)
T ss_pred CccCCCcceehhHHHHHhhh
Confidence 89999999999999999986
No 110
>KOG1863|consensus
Probab=97.28 E-value=0.0003 Score=82.25 Aligned_cols=72 Identities=31% Similarity=0.511 Sum_probs=57.9
Q ss_pred hhHhhhcCCCCcccccCCCCcchhhHHHhhcCCHHHHHHHHhhhCCCCCCCCchhHHHHHHHHHhhhcccCCC
Q psy7711 102 ESERAVSLDLPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDNMKI 174 (577)
Q Consensus 102 ~~~~~~~~~~~~gl~n~g~~cy~ns~~q~l~~~p~l~~~~~~~~~~~~~~~~p~~~~~~~l~~l~~~~~~~~~ 174 (577)
..++.+....|+||.|+|+||||||.+|+|+.+|+||+.+-++... .....|..++...++.++-.+...+.
T Consensus 160 ~~d~k~~tg~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~~-~~~~~~~~~v~~~lq~lF~~LQ~s~~ 231 (1093)
T KOG1863|consen 160 PYDSKRLTGFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPPF-TGHEDPRRSIPLALQRLFYELQMSKR 231 (1093)
T ss_pred hhhhhhcCCCCccccCCCceeeehHHHHHHHccHHHHHHHhcCCCC-CCcccccchHHHHHHHHHHHHhhcCC
Confidence 4455567789999999999999999999999999999999888752 22455677788888888876665554
No 111
>KOG1871|consensus
Probab=97.08 E-value=0.00037 Score=68.98 Aligned_cols=51 Identities=25% Similarity=0.266 Sum_probs=39.4
Q ss_pred cccccccchhhHhhhcCCCCcccccCCCCcchhhHHHhhcCCHHHHHHHHh
Q psy7711 93 KPKFVEDMNESERAVSLDLPAGLNNLGNTCYMNAVIQCLKTVPELRKALKN 143 (577)
Q Consensus 93 ~~~~~ed~~~~~~~~~~~~~~gl~n~g~~cy~ns~~q~l~~~p~l~~~~~~ 143 (577)
...|+|.-+.+-.+..+--|.|+.|-||.|||||+||+|..++++...+..
T Consensus 9 ~~~~~e~~t~s~~~p~~i~Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~ 59 (420)
T KOG1871|consen 9 IGSFLENETRSFFEPVPIDPRGSINKCNICFMNSILQALLYCSPFYNLLEL 59 (420)
T ss_pred hhHhhhcccccccCccccCCccccccceeEeeHHHHHHHHhCccHHHHHHh
Confidence 344556555555555666899999999999999999999999888766643
No 112
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=96.92 E-value=0.0018 Score=50.77 Aligned_cols=68 Identities=21% Similarity=0.298 Sum_probs=49.4
Q ss_pred eEEEEEEeCC-eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCc------eEE-ecCCccCCc-cccccccCCCceEEE
Q psy7711 11 TYIVKVKWGK-ETFEVDVDTDEEPMLFKAQLYELTGVQIDRQ------KVM-CKGATLKND-EWDNFKLSNGSMVLL 78 (577)
Q Consensus 11 ~~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~q------kl~-~~g~~l~d~-~l~~~~~~~~~~i~l 78 (577)
.++|+|.+.. ..+++.++.+.||.+|...|-+..+.+.... +|. -+|..|.++ +|.++||.+|+.++|
T Consensus 2 ~~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 2 LCRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 4689999975 8899999999999999999999988654332 333 467889999 999999999999987
No 113
>KOG1868|consensus
Probab=96.91 E-value=0.0011 Score=72.09 Aligned_cols=66 Identities=29% Similarity=0.408 Sum_probs=43.5
Q ss_pred hhcCCCCcccccCCCCcchhhHHHhhcCCHHHHHHHHh--hhCCCC-CCCCchhHHHHHHHHHhhhccc
Q psy7711 106 AVSLDLPAGLNNLGNTCYMNAVIQCLKTVPELRKALKN--LKGGLQ-PGSNPAQSITASLRDLYECMDN 171 (577)
Q Consensus 106 ~~~~~~~~gl~n~g~~cy~ns~~q~l~~~p~l~~~~~~--~~~~~~-~~~~p~~~~~~~l~~l~~~~~~ 171 (577)
......+.||.|+||+||||+++||++.+++|+..+.. +....+ ...............+...+++
T Consensus 295 ~~~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~ 363 (653)
T KOG1868|consen 295 STDVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWH 363 (653)
T ss_pred cccccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhcc
Confidence 33445788999999999999999999999999965543 222222 2223344455555555544443
No 114
>KOG1864|consensus
Probab=96.85 E-value=0.0014 Score=70.76 Aligned_cols=107 Identities=22% Similarity=0.290 Sum_probs=59.7
Q ss_pred cCCCCCchhHHHHHHHhhccHHHHHHHHhhcCCCCC-------CCCChhhHHHHHHHHHHHHhc--C--CCCCCCC--hH
Q psy7711 193 LNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQP-------GSNPAQSITASLRDLYECMDN--M--KISPSIS--PF 259 (577)
Q Consensus 193 L~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~~~~~-------~~~~~~~l~~~L~~Lf~~l~~--~--~~~~~i~--P~ 259 (577)
|.|.||+||.||+||+|..+|.|+..+..+..-... .........+..+.+-..+.. . ...+.+. -.
T Consensus 34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 113 (587)
T KOG1864|consen 34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLNFSKNSSSNESFNLSVT 113 (587)
T ss_pred EeecCCchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHhhhccCCccccccchHH
Confidence 999999999999999999999999988654432110 000111111111111111111 0 0011111 12
Q ss_pred HHHHHHHhhC---CccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCC
Q psy7711 260 IMLQVLHNVF---PRFADKTDDGSYMQQDANECWTEMVRMLKTALPGEN 305 (577)
Q Consensus 260 ~~~~~l~~~~---~~f~~~~~~~~~~QqDA~Efl~~ll~~L~~~~~~~~ 305 (577)
.+.+.+.... ..|. ...|+||++++..++-.+...+....
T Consensus 114 ~~~~~~~~~~~~~~~~~------~~~~~~~~n~~~~l~~~~~~~~~~~~ 156 (587)
T KOG1864|consen 114 QLVQSRLNNGKKYAEFN------NNDQRDAHNFLLELMAMVDDVMGVSE 156 (587)
T ss_pred HHHHHHhhhhhhhhhhh------cccHhhhhhhhhhhhHHHhhhcccCc
Confidence 2223222221 2233 67999999999999988888766553
No 115
>KOG1872|consensus
Probab=96.72 E-value=0.0004 Score=70.64 Aligned_cols=33 Identities=70% Similarity=1.149 Sum_probs=29.6
Q ss_pred ccccccCCCCCchhHHHHHHHhhccHHHHHHHH
Q psy7711 188 YLPAGLNNLGNTCYMNAVIQCLKTVPELRKALK 220 (577)
Q Consensus 188 ~~~~GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~ 220 (577)
..|+|+.|+|||||||+.+|||...|+++..+.
T Consensus 103 ~lp~gl~nlgNtcymnrtVq~lk~v~el~~~~s 135 (473)
T KOG1872|consen 103 PLPVGLPNLGNTCYMNRTVQCLKGVPELPDALS 135 (473)
T ss_pred cCCccccchhHHHHhhhhhhhhhcCccCcchhh
Confidence 457899999999999999999999998887774
No 116
>KOG4495|consensus
Probab=96.68 E-value=0.011 Score=46.36 Aligned_cols=59 Identities=14% Similarity=0.190 Sum_probs=51.1
Q ss_pred EEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecC--CccCCc-ccccccc
Q psy7711 12 YIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKG--ATLKND-EWDNFKL 70 (577)
Q Consensus 12 ~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g--~~l~d~-~l~~~~~ 70 (577)
|-+.||..+.++=++.+++.||.+||..++..+.-|+..|+|..-. .+|.|. +|++.|.
T Consensus 3 ~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gf 64 (110)
T KOG4495|consen 3 VFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGF 64 (110)
T ss_pred eeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccc
Confidence 5578899999999999999999999999999999999999986523 567777 9999954
No 117
>KOG1887|consensus
Probab=96.40 E-value=0.0014 Score=71.13 Aligned_cols=52 Identities=13% Similarity=0.414 Sum_probs=41.5
Q ss_pred ceeEEEeEEEEeecCCCCCCceEEEEECCCCcEE--EEeCCcceec-ChhhhhccCCCC
Q psy7711 519 SGYYTLQAVLTHKGRTSSSGHYVAWVKKPNGTWI--KCDDDKVYPI-SEEEVLKLSGGG 574 (577)
Q Consensus 519 ~~~Y~L~aVI~H~G~s~~~GHY~a~vr~~~~~W~--~~nD~~V~~v-~~~~V~~~~~Gg 574 (577)
..+|+|+++|.-... .++|.|+... .+.|. ..+|..+..+ +|.+|.+.++-+
T Consensus 724 ~t~yrLVSmv~~~e~---~~~~~C~Aye-~Nrwvs~r~~~~~~e~iG~w~dvvr~c~e~ 778 (806)
T KOG1887|consen 724 NTKYRLVSMVGNHEE---GEEYICFAYE-PNRWVSLRHEDSQGEVVGDWKDVVRFCGER 778 (806)
T ss_pred CceeEEEEEeeeccc---cceEEEeecc-CCcchhhHHHHHHhhhccchHHHHHHHhcc
Confidence 458999999987642 6799999998 77887 9999888877 777777776643
No 118
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=96.29 E-value=0.0096 Score=44.32 Aligned_cols=64 Identities=13% Similarity=0.123 Sum_probs=47.2
Q ss_pred EEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEE
Q psy7711 15 KVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLL 78 (577)
Q Consensus 15 ~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l 78 (577)
+|.+++..+.|.|.++.|+.++-++....+|+.+++=.|.++++.|+-+ .+.-.||-+|+++.|
T Consensus 1 vi~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 1 VICYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp EE-TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred CCccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 3567788999999999999999999999999999988899999999888 999999999999865
No 119
>COG5417 Uncharacterized small protein [Function unknown]
Probab=96.10 E-value=0.033 Score=41.59 Aligned_cols=67 Identities=16% Similarity=0.261 Sum_probs=54.5
Q ss_pred EEEEE--E-eCCeEEEEEeCCCCCHHHHHHHHHHHhCCC-----CCCceEEecCCccCCc-cccccccCCCceEEE
Q psy7711 12 YIVKV--K-WGKETFEVDVDTDEEPMLFKAQLYELTGVQ-----IDRQKVMCKGATLKND-EWDNFKLSNGSMVLL 78 (577)
Q Consensus 12 ~~i~v--k-~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~-----~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l 78 (577)
|+|+| + |++++|++.++...++..|-.-+.+...|. -..-|++-|+++|.++ .|.+++|.+|+.+-+
T Consensus 5 ikVTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 5 IKVTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EEEEEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 55555 4 688999999999999999888887775533 3456788899999988 999999999998764
No 120
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.0072 Score=61.89 Aligned_cols=56 Identities=38% Similarity=0.601 Sum_probs=47.2
Q ss_pred CCceeEEEeEEEEeecCCCCCCceEEEEECC---CCcEEEEeCCcceecChhhhhccCC
Q psy7711 517 NNSGYYTLQAVLTHKGRTSSSGHYVAWVKKP---NGTWIKCDDDKVYPISEEEVLKLSG 572 (577)
Q Consensus 517 ~~~~~Y~L~aVI~H~G~s~~~GHY~a~vr~~---~~~W~~~nD~~V~~v~~~~V~~~~~ 572 (577)
.....|-|.|||+|.|.|+.+|||++|||+. .-+|..|||+++-.++.-++++..|
T Consensus 683 STa~PYaLtAvI~HkG~s~haGHYv~fIrk~~~~K~kWvl~nDek~v~~~svE~~k~nG 741 (749)
T COG5207 683 STAKPYALTAVICHKGDSIHAGHYVWFIRKNGKDKWKWVLKNDEKTVLNSSVEVLKDNG 741 (749)
T ss_pred cccCcccceeEEeccCCcccccceEEEEecccCcceeEEEEccchheehhhHHHHhhCC
Confidence 3444699999999999999999999999985 4489999999998887777776544
No 121
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=95.87 E-value=0.016 Score=47.08 Aligned_cols=57 Identities=11% Similarity=0.203 Sum_probs=42.0
Q ss_pred EEEEeCC--eEEEEEeC--CCCCHHHHHHHHHHHhC--CCCCCceEEecCCccCCc-ccccccc
Q psy7711 14 VKVKWGK--ETFEVDVD--TDEEPMLFKAQLYELTG--VQIDRQKVMCKGATLKND-EWDNFKL 70 (577)
Q Consensus 14 i~vk~~~--~~~~~~v~--~~~tv~~lk~~i~~~~~--v~~~~qkl~~~g~~l~d~-~l~~~~~ 70 (577)
|+|+... -...++|+ ...||..||..|.+..+ ..-.|+||||.|++|.|. .|+..-.
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~l~ 66 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSELK 66 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhhhc
Confidence 4555443 33456666 77999999999999983 556678899999999999 6655433
No 122
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=95.76 E-value=0.047 Score=54.80 Aligned_cols=75 Identities=25% Similarity=0.401 Sum_probs=57.9
Q ss_pred cccccCCCCcchhhHHHhhcCCHHHHHHHHhhhCCCCCCCCchhHHHHHHHHHhhhcccCCCCCCCCchhhhcccccccc
Q psy7711 113 AGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDNMKISPSISPFIMLQGRYLPAG 192 (577)
Q Consensus 113 ~gl~n~g~~cy~ns~~q~l~~~p~l~~~~~~~~~~~~~~~~p~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G 192 (577)
.||.|-+++||+||.||.|+.+|+++..+..+. . .....++++.++-+++-++..
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~-~----c~~e~cL~cELgfLf~ml~~~-------------------- 55 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL-E----CPKEFCLLCELGFLFDMLDSK-------------------- 55 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc-C----CCccccHHHHHHHHHHHhhhh--------------------
Confidence 599999999999999999999999999887766 2 233566777776666554411
Q ss_pred cCCCCCchhHHHHHHHhhccHH
Q psy7711 193 LNNLGNTCYMNAVIQCLKTVPE 214 (577)
Q Consensus 193 L~N~GNtCY~NSvLQ~L~~~~~ 214 (577)
-.|.+|-+.-.+++|..+|.
T Consensus 56 --~~g~~cq~sNflr~l~~~~~ 75 (295)
T PF13423_consen 56 --AKGINCQASNFLRALSWIPE 75 (295)
T ss_pred --cCCCcChHHHHHHHHhcCHH
Confidence 14778888888888888874
No 123
>KOG1639|consensus
Probab=95.24 E-value=0.034 Score=51.85 Aligned_cols=68 Identities=10% Similarity=0.137 Sum_probs=51.4
Q ss_pred EEEEEEeCCe--EEE-EEeCCCCCHHHHHHHHHHH-hCCCCCCceEE----ecCCccCCc-cccccccCCCceEEEe
Q psy7711 12 YIVKVKWGKE--TFE-VDVDTDEEPMLFKAQLYEL-TGVQIDRQKVM----CKGATLKND-EWDNFKLSNGSMVLLM 79 (577)
Q Consensus 12 ~~i~vk~~~~--~~~-~~v~~~~tv~~lk~~i~~~-~~v~~~~qkl~----~~g~~l~d~-~l~~~~~~~~~~i~l~ 79 (577)
|+|+++..++ ... .+.+..+|++|++++|... ..+-+.|+++. -+|+.|.|+ +|.++++.+|.+|.+=
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~vK 77 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYVK 77 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEEe
Confidence 4577776443 444 6677889999999777655 56777666654 378999999 9999999999888763
No 124
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=95.16 E-value=0.0078 Score=57.89 Aligned_cols=20 Identities=70% Similarity=1.413 Sum_probs=19.1
Q ss_pred ccccCCCCcchhhHHHhhcC
Q psy7711 114 GLNNLGNTCYMNAVIQCLKT 133 (577)
Q Consensus 114 gl~n~g~~cy~ns~~q~l~~ 133 (577)
||.|.||+||+||++|||..
T Consensus 1 gl~n~~~~cy~n~~~Q~l~~ 20 (230)
T cd02674 1 GLRNLGNTCYMNSILQCLSA 20 (230)
T ss_pred CccccCcchhhhHHHHHHHH
Confidence 89999999999999999976
No 125
>KOG1769|consensus
Probab=94.94 E-value=0.19 Score=40.23 Aligned_cols=72 Identities=10% Similarity=0.201 Sum_probs=62.6
Q ss_pred eEEEEEEeC-CeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEeccc
Q psy7711 11 TYIVKVKWG-KETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGSK 82 (577)
Q Consensus 11 ~~~i~vk~~-~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs~ 82 (577)
-|+++|+-. +....+.|-.++++..|...-.+..|++...-+++|.|+.+++. +-.+++..+|+.|-++...
T Consensus 20 hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q 93 (99)
T KOG1769|consen 20 HINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQ 93 (99)
T ss_pred eEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeec
Confidence 466777753 35567888889999999999999999999999999999999988 9999999999999988654
No 126
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=0.028 Score=60.52 Aligned_cols=62 Identities=26% Similarity=0.418 Sum_probs=41.4
Q ss_pred CCcccccCCCCcchhhHHHhhcCCHHHHHHHHhhhCCCCCCCCchhHHHHHHHHHhhhcccCCCC
Q psy7711 111 LPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDNMKIS 175 (577)
Q Consensus 111 ~~~gl~n~g~~cy~ns~~q~l~~~p~l~~~~~~~~~~~~~~~~p~~~~~~~l~~l~~~~~~~~~~ 175 (577)
--+||.|.|-||||||.||+|+.+..+|+..-...-. ...+..++.-.++.++-.+..+..|
T Consensus 192 GYVGlrNqGATCYmNSLlQslffi~~FRk~Vy~ipTd---~p~grdSValaLQr~Fynlq~~~~P 253 (1089)
T COG5077 192 GYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPTD---HPRGRDSVALALQRLFYNLQTGEEP 253 (1089)
T ss_pred eeeeeccCCceeeHHHHHHHHHHHHHHHHHhhcCCCC---CCCccchHHHHHHHHHHHHhccCCC
Confidence 4579999999999999999999888887755444321 1223445656666665544444433
No 127
>KOG1870|consensus
Probab=94.52 E-value=0.018 Score=65.84 Aligned_cols=130 Identities=28% Similarity=0.415 Sum_probs=113.4
Q ss_pred CccchhHHHhhhhhhhhh-----ccCcCCCCCceEEEEEEeccCCCceEEEEEEEEEeccccccccccccccCCc-cccc
Q psy7711 356 DVKYMLPGLKNKLQDQIT-----KRSPSLDRDAVYVKTSKVSRLPAYLTIQFVRFFYKEKERINAKVLKDIKFPI-EFDA 429 (577)
Q Consensus 356 ~~~~l~~~l~~~~~e~i~-----~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~V~fp~-~Ldl 429 (577)
...+|++||+.|++.+.. .+|+.|.....|.|+..+.+||++|+|||+||.|.+. ...|+...|+||. .||+
T Consensus 694 ~~~sL~~cl~~F~~~E~L~~~~~w~C~~Cke~~~A~Kk~~lwrlPeiLiihLKrF~~~r~--~~~k~~~~v~fPi~~ld~ 771 (842)
T KOG1870|consen 694 APNSLESCLELFSEPETLGKDDRWYCPQCKELRQATKKLDLWRLPEILIIHLKRFQYSRE--SSSKVKTKVEFPLGSLDL 771 (842)
T ss_pred CcccHHHHHHhhcchhcCCccccccChHHHHHHHHhhhhhhhhCCceEEEEeecceeech--hhhhhCccccCCCcCCCc
Confidence 356799999999985554 3799999999999999999999999999999999984 4599999999997 5998
Q ss_pred cccCCHHHHhccccchHHHHHHHHHHHHHHHhhhhcccCCCchhhhhhhcccccCCccccccccccccchhcccCCCCCC
Q psy7711 430 YELCTPELQAKLAPMREKFKIAEEKEAFEEFRTQYVFISIPMDEIYVRFGQKIYAPVGDRIQDFGVKSTEFQSRGQGSSP 509 (577)
Q Consensus 430 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 509 (577)
++|+...
T Consensus 772 s~~~~~~------------------------------------------------------------------------- 778 (842)
T KOG1870|consen 772 SEFVVNK------------------------------------------------------------------------- 778 (842)
T ss_pred chhhccC-------------------------------------------------------------------------
Confidence 8775321
Q ss_pred CCCCCCCCCceeEEEeEEEEeecCCCCCCceEEEEEC-CCCcEEEEeCCcceecChhhhhc
Q psy7711 510 GRVDIGSNNSGYYTLQAVLTHKGRTSSSGHYVAWVKK-PNGTWIKCDDDKVYPISEEEVLK 569 (577)
Q Consensus 510 ~~~~~~~~~~~~Y~L~aVI~H~G~s~~~GHY~a~vr~-~~~~W~~~nD~~V~~v~~~~V~~ 569 (577)
....|+|+||+.|+|. +.+|||+||.|+ .+++||.|||+.|+++++++|..
T Consensus 779 --------~~~~Y~l~av~nHyG~-l~~GHYta~~k~~~~~~w~~fdDs~v~~~~~~~i~t 830 (842)
T KOG1870|consen 779 --------EQVLYDLYAVGNHYGQ-LSGGHYTAYAKNVGDGKWYLFDDSSVSEVDEDEIDT 830 (842)
T ss_pred --------ccceeeeeeeecccCC-cCCcchhhhhhcCCCCceEEeccccCCCCChhhccc
Confidence 0147999999999997 999999999999 59999999999999999999865
No 128
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=94.31 E-value=0.31 Score=38.31 Aligned_cols=70 Identities=4% Similarity=0.014 Sum_probs=56.1
Q ss_pred CceEEEEEEeC-CeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-ceEE--ecCCccCC--c-cccccccCCCceEEE
Q psy7711 9 PHTYIVKVKWG-KETFEVDVDTDEEPMLFKAQLYELTGVQIDR-QKVM--CKGATLKN--D-EWDNFKLSNGSMVLL 78 (577)
Q Consensus 9 ~~~~~i~vk~~-~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~-qkl~--~~g~~l~d--~-~l~~~~~~~~~~i~l 78 (577)
....+|.||.. |+.+.-...+++||.+|..-|......+... =.|+ |..+.+.+ + +|.++|+.++.+|+|
T Consensus 4 ~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v 80 (82)
T PF00789_consen 4 SDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV 80 (82)
T ss_dssp SSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred CCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence 45788999984 5778888999999999999999998777765 5665 45555543 3 899999999999986
No 129
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=94.16 E-value=0.057 Score=53.21 Aligned_cols=51 Identities=24% Similarity=0.301 Sum_probs=37.7
Q ss_pred CcccccCCCCcchhhHHHhhcCCHHHHHHHHhhhCCCCCCCCchhHHHHHHHHHh
Q psy7711 112 PAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLY 166 (577)
Q Consensus 112 ~~gl~n~g~~cy~ns~~q~l~~~p~l~~~~~~~~~~~~~~~~p~~~~~~~l~~l~ 166 (577)
-+||.|.|.+||+|+.+|.++.+|.+|..+.+.... .....++...+.-++
T Consensus 15 ~~gl~~~~~~~y~n~~lq~~~~~~~~~~~~~~~~~~----~~~~~~l~~el~~lf 65 (268)
T cd02672 15 YAGLENHITNSYCNSLLQLLYFIPPFRNFTAIILVA----CPKESCLLCELGYLF 65 (268)
T ss_pred ccccccCCccchHHHHHHHHHhcHHHHHHHHhhccc----CCcCccHHHHHHHHH
Confidence 579999999999999999999999999974332221 222455666666665
No 130
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=93.82 E-value=0.023 Score=54.78 Aligned_cols=20 Identities=70% Similarity=1.227 Sum_probs=19.2
Q ss_pred ccccCCCCcchhhHHHhhcC
Q psy7711 114 GLNNLGNTCYMNAVIQCLKT 133 (577)
Q Consensus 114 gl~n~g~~cy~ns~~q~l~~ 133 (577)
||.|.||+||+||++|+|+.
T Consensus 1 Gl~N~~n~Cy~ns~lq~l~~ 20 (255)
T cd02257 1 GLNNLGNTCYLNSVLQALFS 20 (255)
T ss_pred CccccCcchHHhHHHHHHHH
Confidence 89999999999999999987
No 131
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=93.39 E-value=0.61 Score=36.50 Aligned_cols=68 Identities=7% Similarity=-0.007 Sum_probs=54.8
Q ss_pred eEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEE--ecCCccCC---c-cccccccCCCceEEE
Q psy7711 11 TYIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVM--CKGATLKN---D-EWDNFKLSNGSMVLL 78 (577)
Q Consensus 11 ~~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~--~~g~~l~d---~-~l~~~~~~~~~~i~l 78 (577)
..+|.||. +|+.+.....+++||.++..-|.+..+.....-.|+ |..+.+.+ + +|.++|+.++.+|+|
T Consensus 4 ~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 4 QCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred eEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 56788996 567788899999999999999977777766677776 56677753 3 899999999998876
No 132
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=92.93 E-value=0.057 Score=48.22 Aligned_cols=34 Identities=29% Similarity=0.480 Sum_probs=24.9
Q ss_pred eEEEEeecCCCCCCceEEEEECCCCcEEEEeCCcceecC
Q psy7711 525 QAVLTHKGRTSSSGHYVAWVKKPNGTWIKCDDDKVYPIS 563 (577)
Q Consensus 525 ~aVI~H~G~s~~~GHY~a~vr~~~~~W~~~nD~~V~~v~ 563 (577)
.|-|.-.|. ||-+.+.+- .+.||++||+.+.+.+
T Consensus 130 ~agi~~~g~----~Havfa~~t-s~gWy~iDDe~~y~~t 163 (193)
T PF05408_consen 130 HAGIFLKGQ----EHAVFACVT-SDGWYAIDDEDFYPWT 163 (193)
T ss_dssp EEEEEEEST----TEEEEEEEE-TTCEEEEETTEEEE--
T ss_pred hhHheecCC----cceEEEEEe-eCcEEEecCCeeeeCC
Confidence 444555554 799988887 7889999999998763
No 133
>KOG0013|consensus
Probab=92.78 E-value=0.14 Score=46.59 Aligned_cols=68 Identities=18% Similarity=0.240 Sum_probs=58.0
Q ss_pred EEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEec
Q psy7711 13 IVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMG 80 (577)
Q Consensus 13 ~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~g 80 (577)
++.+...++.+-+.+.--+|+.++|.++++..|+.+--|++.+.|+.+-|. .|..+++..|++..|-+
T Consensus 149 k~rlTtT~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqv 217 (231)
T KOG0013|consen 149 KLRLTTTREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQV 217 (231)
T ss_pred HHHhhhhhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEEE
Confidence 344444566677888888999999999999999999999999999999999 99999999997766543
No 134
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=92.34 E-value=0.28 Score=48.98 Aligned_cols=78 Identities=13% Similarity=0.090 Sum_probs=47.2
Q ss_pred cccccCCCCCchhHHHHHHHhhccHHHHHHHHhhcCCCCCCCCChhhHH-HHHHHHHHHHhcCCCCCCCChHHHHHHHHh
Q psy7711 189 LPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSIT-ASLRDLYECMDNMKISPSISPFIMLQVLHN 267 (577)
Q Consensus 189 ~~~GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~l~-~~L~~Lf~~l~~~~~~~~i~P~~~~~~l~~ 267 (577)
+.+=|+-.-|+||+||++-.|-++.. .|. -.++.+|..+..+ +|..|.+.+-.
T Consensus 101 g~~~Lkq~dNNCwVna~~~~LQ~~~~--------------------~f~~~~l~~aw~~f~~G------~~~~fVa~~Ya 154 (320)
T PF08715_consen 101 GFRVLKQSDNNCWVNAACLQLQALKI--------------------KFKSPGLDEAWNEFKAG------DPAPFVAWCYA 154 (320)
T ss_dssp TEEEE---TTTHHHHHHHHHHTTST----------------------BSSHHHHHHHHHHHTT--------HHHHHHHHH
T ss_pred CEEEEEecCCCcHHHHHHHHHHhcCC--------------------ccCCHHHHHHHHHHhCC------ChHHHHHHHHH
Confidence 34556777899999999887754421 111 2678888888877 67888877766
Q ss_pred hCCccccccCCCCCCCCCHHHHHHHHHHHHHH
Q psy7711 268 VFPRFADKTDDGSYMQQDANECWTEMVRMLKT 299 (577)
Q Consensus 268 ~~~~f~~~~~~~~~~QqDA~Efl~~ll~~L~~ 299 (577)
... .. .++-.||+++|..|++.++.
T Consensus 155 ~~~-~~------~G~~gDa~~~L~~ll~~~~~ 179 (320)
T PF08715_consen 155 STN-AK------KGDPGDAEYVLSKLLKDADL 179 (320)
T ss_dssp HTT---------TTS---HHHHHHHHHTTB-T
T ss_pred HcC-CC------CCCCcCHHHHHHHHHHhccc
Confidence 432 22 45788999999999876553
No 135
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=91.96 E-value=1.1 Score=34.89 Aligned_cols=65 Identities=8% Similarity=0.068 Sum_probs=50.2
Q ss_pred eEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCC-CCCceEE--ecCCccCCc--cccccccCCCce
Q psy7711 11 TYIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQ-IDRQKVM--CKGATLKND--EWDNFKLSNGSM 75 (577)
Q Consensus 11 ~~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~-~~~qkl~--~~g~~l~d~--~l~~~~~~~~~~ 75 (577)
+-+|.|+. .|+.....+..++||.+|.+-|....+-+ ...-.|+ |..+.+.|+ +|.++||.+...
T Consensus 4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v 74 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVI 74 (79)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEE
Confidence 56788996 45778889999999999999999876432 2445565 677888766 999999996443
No 136
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=91.25 E-value=1.5 Score=33.90 Aligned_cols=66 Identities=11% Similarity=0.113 Sum_probs=48.8
Q ss_pred eEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEE--ecCCccCC---c-cccccccCCCceEEE
Q psy7711 11 TYIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVM--CKGATLKN---D-EWDNFKLSNGSMVLL 78 (577)
Q Consensus 11 ~~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~--~~g~~l~d---~-~l~~~~~~~~~~i~l 78 (577)
+.+|.||. .|+.+......++||.++..-|.....- ...-.|+ |..+.+.+ + +|.++|+.+ +.+++
T Consensus 2 ~t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~-s~~~~ 74 (77)
T cd01767 2 TTKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVN-EVVFQ 74 (77)
T ss_pred cEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCcc-ceEEE
Confidence 45788886 5577888899999999999999876543 4445665 55677765 3 999999995 44444
No 137
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=90.92 E-value=2.1 Score=33.50 Aligned_cols=68 Identities=9% Similarity=0.158 Sum_probs=56.1
Q ss_pred ceEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEE--ecCCccC---Cc-cccccccCCCceEEE
Q psy7711 10 HTYIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVM--CKGATLK---ND-EWDNFKLSNGSMVLL 78 (577)
Q Consensus 10 ~~~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~--~~g~~l~---d~-~l~~~~~~~~~~i~l 78 (577)
+.-+|.||. +|+...-....++|+.+|-.-|.+ .|.+++.-+|+ |.-|.+. .+ +|.++|+.+-.+|+|
T Consensus 4 ~~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfV 78 (82)
T cd01773 4 PKARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFV 78 (82)
T ss_pred CeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEE
Confidence 346788997 567788888889999999999998 58899999998 5566663 23 899999999999876
No 138
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=90.88 E-value=1 Score=35.16 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=40.4
Q ss_pred EEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecC
Q psy7711 12 YIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKG 57 (577)
Q Consensus 12 ~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g 57 (577)
++|+|+.++..+.+.++.+.|..+|+.+|..+.+.+.+..+|-|..
T Consensus 2 ~~vK~~~~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D 47 (81)
T smart00666 2 VDVKLRYGGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD 47 (81)
T ss_pred ccEEEEECCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence 5688888889999999999999999999999999887777777763
No 139
>KOG1867|consensus
Probab=90.49 E-value=0.29 Score=52.24 Aligned_cols=62 Identities=27% Similarity=0.468 Sum_probs=43.0
Q ss_pred CcccccCCCCcchhhHHHhhcCCHHHHHHHHhhhCCCCCCCCchhHHHHHHHHHhhhcccCC
Q psy7711 112 PAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDNMK 173 (577)
Q Consensus 112 ~~gl~n~g~~cy~ns~~q~l~~~p~l~~~~~~~~~~~~~~~~p~~~~~~~l~~l~~~~~~~~ 173 (577)
..|+.|+|+|||||+++|++...|..+.......++..+.+.-..++.+.+..+...+++..
T Consensus 161 l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~~~~~~~~~l~~~~~~~~~~~~s~~ 222 (492)
T KOG1867|consen 161 LRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSKEPSSSGSSCLVCDLDRLFQALYSGH 222 (492)
T ss_pred ccccccccHHHHHHHHHHHhhccchhhccchhhhcccCCCCCCCcchhhhhhhhhhHhhcCC
Confidence 56899999999999999999877777665554444333333335666666777766666544
No 140
>PRK06437 hypothetical protein; Provisional
Probab=90.00 E-value=1.5 Score=32.92 Aligned_cols=53 Identities=15% Similarity=0.278 Sum_probs=40.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCccccccccCCCceEEEe
Q psy7711 19 GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKNDEWDNFKLSNGSMVLLM 79 (577)
Q Consensus 19 ~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~~l~~~~~~~~~~i~l~ 79 (577)
+++.-.++++...||.+|=++ .|++++.-.+..+|..+..+ .-|++|++|-++
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~~~----~~L~dgD~Veiv 61 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVLED----HNVKKEDDVLIL 61 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECCCc----eEcCCCCEEEEE
Confidence 556677788888899887655 48888888778899888744 358899999887
No 141
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=89.90 E-value=1.8 Score=32.89 Aligned_cols=59 Identities=14% Similarity=0.117 Sum_probs=41.7
Q ss_pred eEEEEEEeCCe--EEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCccccccccCCCceEEEe
Q psy7711 11 TYIVKVKWGKE--TFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKNDEWDNFKLSNGSMVLLM 79 (577)
Q Consensus 11 ~~~i~vk~~~~--~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~~l~~~~~~~~~~i~l~ 79 (577)
+|+|++ +|+ ...++++...||.+|-+++ +++++.-.+..+|..+.. +..|++|+.|-++
T Consensus 4 mm~v~v--ng~~~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~----~~~l~~gD~Veii 64 (70)
T PRK08364 4 MIRVKV--IGRGIEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVALE----DDPVKDGDYVEVI 64 (70)
T ss_pred EEEEEE--eccccceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCC----CcCcCCCCEEEEE
Confidence 444444 444 5678888888999988775 777766555678877643 4458999999887
No 142
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=89.87 E-value=1.1 Score=34.79 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=37.6
Q ss_pred EEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecC
Q psy7711 14 VKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKG 57 (577)
Q Consensus 14 i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g 57 (577)
|+|.... .+.|.|.++.+..+|..+|.++.++|+++-+|-|+-
T Consensus 5 vKV~f~~-tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkd 47 (80)
T cd06406 5 VKVHFKY-TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKS 47 (80)
T ss_pred EEEEEEE-EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEecc
Confidence 4555555 889999999999999999999999999999999864
No 143
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=89.82 E-value=2 Score=33.52 Aligned_cols=67 Identities=9% Similarity=0.138 Sum_probs=52.2
Q ss_pred eEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEE--ecCCccCC---c-cccccccCCCceEEE
Q psy7711 11 TYIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVM--CKGATLKN---D-EWDNFKLSNGSMVLL 78 (577)
Q Consensus 11 ~~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~--~~g~~l~d---~-~l~~~~~~~~~~i~l 78 (577)
..+|.||. +|+........++|+.++.+-|....+.+ ..-.|+ |..|.+.+ + +|.++|+.+...|+|
T Consensus 4 ~~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 4 ETRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 46788885 56778888999999999999998765443 445665 56677753 2 899999999999887
No 144
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=89.75 E-value=2.6 Score=32.96 Aligned_cols=67 Identities=16% Similarity=0.168 Sum_probs=55.0
Q ss_pred eEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEE--ecCCccC--C-c-cccccccCCCceEEE
Q psy7711 11 TYIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVM--CKGATLK--N-D-EWDNFKLSNGSMVLL 78 (577)
Q Consensus 11 ~~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~--~~g~~l~--d-~-~l~~~~~~~~~~i~l 78 (577)
..+|.|+. .|+...-....++++.+|-.-|... |.+++.-+|+ |.-+.+. | + +|.++|+.+..+|+|
T Consensus 4 ~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~V 77 (80)
T cd01771 4 ISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLIL 77 (80)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEE
Confidence 57888997 5577788899999999999999875 8888888987 6667774 2 3 899999999988876
No 145
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=89.36 E-value=1.5 Score=34.39 Aligned_cols=47 Identities=19% Similarity=0.244 Sum_probs=41.9
Q ss_pred eEEEEEEeCCeEEE-EEeCCCCCHHHHHHHHHHHhCCCCCCceEEecC
Q psy7711 11 TYIVKVKWGKETFE-VDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKG 57 (577)
Q Consensus 11 ~~~i~vk~~~~~~~-~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g 57 (577)
|++|++.+++.... +.+..+.|..+|+.+|.+..+.+...-+|.|..
T Consensus 1 t~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 1 TVRVKVRYGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp SEEEEEEETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred CEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 47899999998887 999999999999999999999998888888864
No 146
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=89.27 E-value=2.9 Score=33.08 Aligned_cols=68 Identities=13% Similarity=0.113 Sum_probs=53.5
Q ss_pred ceEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEe--cCCccC--------Cc-cccccccCCCceEE
Q psy7711 10 HTYIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMC--KGATLK--------ND-EWDNFKLSNGSMVL 77 (577)
Q Consensus 10 ~~~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~--~g~~l~--------d~-~l~~~~~~~~~~i~ 77 (577)
..++|.|+. .|+...-....++||.+|..-|... +..++.-.|+. .-+.+. .+ +|.++||.+...|+
T Consensus 3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~ 81 (85)
T cd01774 3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSL-KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLF 81 (85)
T ss_pred ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhC-CCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEE
Confidence 468899996 5677888899999999999999754 45667888874 446664 24 99999999888876
Q ss_pred E
Q psy7711 78 L 78 (577)
Q Consensus 78 l 78 (577)
|
T Consensus 82 V 82 (85)
T cd01774 82 V 82 (85)
T ss_pred E
Confidence 5
No 147
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=87.52 E-value=2.2 Score=33.82 Aligned_cols=57 Identities=14% Similarity=0.261 Sum_probs=39.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecC-----CccCC-c-cccccccCCCceEEE
Q psy7711 21 ETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKG-----ATLKN-D-EWDNFKLSNGSMVLL 78 (577)
Q Consensus 21 ~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g-----~~l~d-~-~l~~~~~~~~~~i~l 78 (577)
..++..+...+||+.+...+..++.| ++.-||--++ -.|.+ + ++.++||.+|+.|+|
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vli 77 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLI 77 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEE
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEE
Confidence 34677888999999999999999999 6667875332 23544 4 999999999998855
No 148
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=87.51 E-value=2 Score=32.01 Aligned_cols=58 Identities=17% Similarity=0.264 Sum_probs=44.8
Q ss_pred EEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCccccccccCCCceEEEe
Q psy7711 15 KVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKNDEWDNFKLSNGSMVLLM 79 (577)
Q Consensus 15 ~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~~l~~~~~~~~~~i~l~ 79 (577)
+|.-+|+.+.+ + ..|+.+|.+.+ +++++.-.+-++|..++.+.|.+.-|++|++|-++
T Consensus 2 ~i~~Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~~~~~~~~~L~dgD~Ieiv 59 (65)
T PRK06488 2 KLFVNGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVHKEARAQFVLHEGDRIEIL 59 (65)
T ss_pred EEEECCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcCHHHcCccccCCCCEEEEE
Confidence 45667887776 3 35899888765 67776556668998888668888999999999887
No 149
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=86.79 E-value=1 Score=34.86 Aligned_cols=53 Identities=15% Similarity=0.205 Sum_probs=42.4
Q ss_pred eCCCCCHHHHHHHHHHHhC-CCCCCceEEecCCccCCc-ccccc-ccCCCceEEEe
Q psy7711 27 VDTDEEPMLFKAQLYELTG-VQIDRQKVMCKGATLKND-EWDNF-KLSNGSMVLLM 79 (577)
Q Consensus 27 v~~~~tv~~lk~~i~~~~~-v~~~~qkl~~~g~~l~d~-~l~~~-~~~~~~~i~l~ 79 (577)
|.++++|.|+++.|..... ..-..-.|.++|..|+|. .|+++ |+++|.+|.|+
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lv 56 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELV 56 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEE
Confidence 5678999999999987743 444455667899999777 88887 69999999988
No 150
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=86.19 E-value=3.1 Score=32.68 Aligned_cols=37 Identities=14% Similarity=0.105 Sum_probs=33.8
Q ss_pred EEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC
Q psy7711 12 YIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQI 48 (577)
Q Consensus 12 ~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~ 48 (577)
|+|++..++..+.+.+.++.+..+|+.+|..+.++..
T Consensus 1 ~~vK~~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~ 37 (82)
T cd06407 1 VRVKATYGEEKIRFRLPPSWGFTELKQEIAKRFKLDD 37 (82)
T ss_pred CEEEEEeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCC
Confidence 5688889999999999999999999999999999864
No 151
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=86.02 E-value=3.3 Score=36.88 Aligned_cols=62 Identities=16% Similarity=0.105 Sum_probs=44.9
Q ss_pred EEEEEEe-CC----eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCce-EEe-cCCcc--CCc-cccccccCCC
Q psy7711 12 YIVKVKW-GK----ETFEVDVDTDEEPMLFKAQLYELTGVQIDRQK-VMC-KGATL--KND-EWDNFKLSNG 73 (577)
Q Consensus 12 ~~i~vk~-~~----~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qk-l~~-~g~~l--~d~-~l~~~~~~~~ 73 (577)
|.|.|+. .| .++.+.++.++||.+|+..|.+.+++|+..|- |.+ .++.+ .++ .++.+.-.++
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~ 72 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQ 72 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcC
Confidence 4577775 44 46889999999999999999999999999974 333 34444 344 6666654443
No 152
>KOG0012|consensus
Probab=85.25 E-value=1.9 Score=43.05 Aligned_cols=64 Identities=20% Similarity=0.292 Sum_probs=58.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc---cccccccCCCceEEEeccccC
Q psy7711 21 ETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND---EWDNFKLSNGSMVLLMGSKEE 84 (577)
Q Consensus 21 ~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~---~l~~~~~~~~~~i~l~gs~~~ 84 (577)
+++.++|..+-.+..|+..++-.+|++.+.--|+|+++.+.+. .+.++|++.|+.+++=+...+
T Consensus 13 ~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks~d 79 (380)
T KOG0012|consen 13 KKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCKSSD 79 (380)
T ss_pred eeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCCCCC
Confidence 6678999999999999999999999999999999999988766 799999999999998877655
No 153
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=84.84 E-value=4.3 Score=32.03 Aligned_cols=63 Identities=16% Similarity=0.247 Sum_probs=48.5
Q ss_pred eEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCccccccccCCCceEEEe
Q psy7711 11 TYIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKNDEWDNFKLSNGSMVLLM 79 (577)
Q Consensus 11 ~~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~~l~~~~~~~~~~i~l~ 79 (577)
++.++|.-+|+.+.++ ...||.+|=+. .++++..--+-++|.++..+.|.+.-|++|++|-++
T Consensus 16 ~~~m~I~VNG~~~~~~--~~~tl~~LL~~----l~~~~~~vAVevNg~iVpr~~w~~t~L~egD~IEIv 78 (84)
T PRK06083 16 MVLITISINDQSIQVD--ISSSLAQIIAQ----LSLPELGCVFAINNQVVPRSEWQSTVLSSGDAISLF 78 (84)
T ss_pred CceEEEEECCeEEEcC--CCCcHHHHHHH----cCCCCceEEEEECCEEeCHHHcCcccCCCCCEEEEE
Confidence 4567778888877664 45678777554 477776666668999997778999999999999887
No 154
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=84.67 E-value=2.6 Score=31.41 Aligned_cols=57 Identities=19% Similarity=0.307 Sum_probs=43.9
Q ss_pred EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCccccccccCCCceEEEe
Q psy7711 17 KWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKNDEWDNFKLSNGSMVLLM 79 (577)
Q Consensus 17 k~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~~l~~~~~~~~~~i~l~ 79 (577)
.-+|+.++ ++...||.+|.+++ +++++.-.+.++|+.+..+.+.+.-|++|++|-++
T Consensus 3 ~iNg~~~~--~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~~~~~~~L~~gD~V~ii 59 (65)
T cd00565 3 TVNGEPRE--VEEGATLAELLEEL----GLDPRGVAVALNGEIVPRSEWASTPLQDGDRIEIV 59 (65)
T ss_pred EECCeEEE--cCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHHHcCceecCCCCEEEEE
Confidence 33455444 45567899888775 57777777788999887778888899999999887
No 155
>KOG4583|consensus
Probab=83.91 E-value=0.44 Score=46.71 Aligned_cols=62 Identities=11% Similarity=0.109 Sum_probs=46.1
Q ss_pred eEEEEEEeCCeEE---EEEeCCCCCHHHHHHHHHHHhC--CCCCCceEEecCCccCCc-cccccccCC
Q psy7711 11 TYIVKVKWGKETF---EVDVDTDEEPMLFKAQLYELTG--VQIDRQKVMCKGATLKND-EWDNFKLSN 72 (577)
Q Consensus 11 ~~~i~vk~~~~~~---~~~v~~~~tv~~lk~~i~~~~~--v~~~~qkl~~~g~~l~d~-~l~~~~~~~ 72 (577)
.+++.||..+++| +|..+..-||++||..+....- =-+..|||+|.||.|.|. .|.+.-.|.
T Consensus 9 ~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrkq 76 (391)
T KOG4583|consen 9 PVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRKQ 76 (391)
T ss_pred ceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHHH
Confidence 3677778776554 4666666799999999988753 124569999999999888 888775443
No 156
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=83.55 E-value=0.35 Score=47.39 Aligned_cols=74 Identities=14% Similarity=0.173 Sum_probs=0.0
Q ss_pred eEEEEEEeCC-eEEEEEeC---C--CCCHHHHHHHHHH----------HhCCCCCCce-----EEecCCccCCc-ccccc
Q psy7711 11 TYIVKVKWGK-ETFEVDVD---T--DEEPMLFKAQLYE----------LTGVQIDRQK-----VMCKGATLKND-EWDNF 68 (577)
Q Consensus 11 ~~~i~vk~~~-~~~~~~v~---~--~~tv~~lk~~i~~----------~~~v~~~~qk-----l~~~g~~l~d~-~l~~~ 68 (577)
.|.|++|... -.++|.++ + +.+|.++|.++++ .++||.+..| |+|+-+.+.|. +|.++
T Consensus 78 sItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~ 157 (309)
T PF12754_consen 78 SITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEV 157 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHH
Confidence 4788888643 34444332 2 4789999999999 8999999999 99998877555 55444
Q ss_pred c-----------cCCCceEEEeccccC
Q psy7711 69 K-----------LSNGSMVLLMGSKEE 84 (577)
Q Consensus 69 ~-----------~~~~~~i~l~gs~~~ 84 (577)
. -.-..-+|+||.+..
T Consensus 158 l~~~~~~l~~~~~~vE~gvMVlGGa~~ 184 (309)
T PF12754_consen 158 LADSESRLLSGGKEVEFGVMVLGGAAV 184 (309)
T ss_dssp ---------------------------
T ss_pred HhcccchhccCCceEEEEEEEECCccc
Confidence 2 222346789988765
No 157
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=83.08 E-value=3.7 Score=31.91 Aligned_cols=45 Identities=22% Similarity=0.142 Sum_probs=37.5
Q ss_pred EEEEEeCCeEEEEEeC-CCCCHHHHHHHHHHHhCCCCCCceEEecC
Q psy7711 13 IVKVKWGKETFEVDVD-TDEEPMLFKAQLYELTGVQIDRQKVMCKG 57 (577)
Q Consensus 13 ~i~vk~~~~~~~~~v~-~~~tv~~lk~~i~~~~~v~~~~qkl~~~g 57 (577)
+|++++++....+.+. .+.|..+|+.+|.+..+.+...-+|-|+.
T Consensus 2 ~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D 47 (81)
T cd05992 2 RVKVKYGGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD 47 (81)
T ss_pred cEEEEecCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence 5888899888888888 88999999999999999887555665654
No 158
>KOG1866|consensus
Probab=83.08 E-value=0.81 Score=49.71 Aligned_cols=63 Identities=33% Similarity=0.508 Sum_probs=45.2
Q ss_pred cCCCCcccccCCCCcchhhHHHhhcCCHHHHHHHHhhhCCC-CCCCCchhHHHHHHHHHhhhcc
Q psy7711 108 SLDLPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGL-QPGSNPAQSITASLRDLYECMD 170 (577)
Q Consensus 108 ~~~~~~gl~n~g~~cy~ns~~q~l~~~p~l~~~~~~~~~~~-~~~~~p~~~~~~~l~~l~~~~~ 170 (577)
...--+||.|-|.|||||+++|-+..+|-+++.+..+.... .+.-....++...++.++....
T Consensus 91 pp~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~td~pd~s~~e~vl~~lQ~iF~hL~ 154 (944)
T KOG1866|consen 91 PPEGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGTTDLPDMSGDEKVLRHLQVIFGHLA 154 (944)
T ss_pred CCcceeeecCCCchHHHhhhhhhhhhcccccchhhhhcccccchhhcchHHHHHHHHHHHHHHH
Confidence 34456799999999999999999999999998876655431 2322333447777777775444
No 159
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=81.02 E-value=1.1 Score=40.21 Aligned_cols=21 Identities=33% Similarity=0.724 Sum_probs=15.4
Q ss_pred cccCCCCCchhHHHHHHHhhc
Q psy7711 191 AGLNNLGNTCYMNAVIQCLKT 211 (577)
Q Consensus 191 ~GL~N~GNtCY~NSvLQ~L~~ 211 (577)
+|+.|.+|+||+||++|.+..
T Consensus 34 t~~PN~~dnCWlNaL~QL~~~ 54 (193)
T PF05408_consen 34 TGLPNNHDNCWLNALLQLFRY 54 (193)
T ss_dssp E----SSSTHHHHHHHHHHHH
T ss_pred ecCCCCCCChHHHHHHHHHHH
Confidence 599999999999999999864
No 160
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=80.54 E-value=4.2 Score=30.14 Aligned_cols=55 Identities=24% Similarity=0.402 Sum_probs=41.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCccccccccCCCceEEEe
Q psy7711 19 GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKNDEWDNFKLSNGSMVLLM 79 (577)
Q Consensus 19 ~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~~l~~~~~~~~~~i~l~ 79 (577)
+|+.++ ++...|+.+|.+.+ +++++.-.+.++|..+..+.+.+.-|++|+.|-++
T Consensus 4 Ng~~~~--~~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~~~~~~~~L~~gD~veii 58 (64)
T TIGR01683 4 NGEPVE--VEDGLTLAALLESL----GLDPRRVAVAVNGEIVPRSEWDDTILKEGDRIEIV 58 (64)
T ss_pred CCeEEE--cCCCCcHHHHHHHc----CCCCCeEEEEECCEEcCHHHcCceecCCCCEEEEE
Confidence 455444 45567899887764 67777666778998887667788899999999886
No 161
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=80.44 E-value=5.3 Score=31.25 Aligned_cols=65 Identities=11% Similarity=0.094 Sum_probs=42.0
Q ss_pred eEEEEEEeC-------C-eEEEEEeCCCCCHHHHHHHHHHHhC-CCCCCc--eEEecCCccCCccccccccCCCceEEEe
Q psy7711 11 TYIVKVKWG-------K-ETFEVDVDTDEEPMLFKAQLYELTG-VQIDRQ--KVMCKGATLKNDEWDNFKLSNGSMVLLM 79 (577)
Q Consensus 11 ~~~i~vk~~-------~-~~~~~~v~~~~tv~~lk~~i~~~~~-v~~~~q--kl~~~g~~l~d~~l~~~~~~~~~~i~l~ 79 (577)
+|+|+|+.- | ....++++...||.+|.+.|..... ....+. .+..+|+...++ .-|++|+.|-++
T Consensus 1 ~m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~~----~~l~dgDeVai~ 76 (82)
T PLN02799 1 SVEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTES----AALKDGDELAII 76 (82)
T ss_pred CeEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCCC----cCcCCCCEEEEe
Confidence 367888752 2 3456788888999999999976641 111011 244677665433 348899999887
No 162
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=80.21 E-value=6.4 Score=29.32 Aligned_cols=58 Identities=19% Similarity=0.249 Sum_probs=43.8
Q ss_pred EEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCccccccccCCCceEEEe
Q psy7711 15 KVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKNDEWDNFKLSNGSMVLLM 79 (577)
Q Consensus 15 ~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~~l~~~~~~~~~~i~l~ 79 (577)
+|.-+|+.++++ ...|+.+|=.+ .++++..-.+-++|..++.+.+... |++|++|-++
T Consensus 2 ~i~vNG~~~~~~--~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~~~~~-L~~gD~ieIv 59 (65)
T PRK05863 2 IVVVNEEQVEVD--EQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSDWATK-LRDGARLEVV 59 (65)
T ss_pred EEEECCEEEEcC--CCCcHHHHHHH----cCCCCCcEEEEECCcCcChhHhhhh-cCCCCEEEEE
Confidence 355577766654 56687776544 5889888888899999887766665 9999999876
No 163
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=80.04 E-value=11 Score=29.76 Aligned_cols=36 Identities=19% Similarity=0.172 Sum_probs=33.2
Q ss_pred EEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCC
Q psy7711 12 YIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQ 47 (577)
Q Consensus 12 ~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~ 47 (577)
|+|+|..++...-|.|+++.+..+|..+|.++.++.
T Consensus 3 ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~ 38 (86)
T cd06408 3 IRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK 38 (86)
T ss_pred EEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 778888889999999999999999999999999984
No 164
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=79.77 E-value=7.3 Score=28.95 Aligned_cols=59 Identities=19% Similarity=0.266 Sum_probs=45.4
Q ss_pred EEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCccccccccCCCceEEEe
Q psy7711 15 KVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKNDEWDNFKLSNGSMVLLM 79 (577)
Q Consensus 15 ~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~~l~~~~~~~~~~i~l~ 79 (577)
+|+.+|+.++ ++...|+.+|=.+ .++++++-.+-++|..+....+.+.-|++|++|-++
T Consensus 2 ~i~vNG~~~~--~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~~~~~~~l~~gD~vei~ 60 (66)
T PRK05659 2 NIQLNGEPRE--LPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRSQHASTALREGDVVEIV 60 (66)
T ss_pred EEEECCeEEE--cCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHHHcCcccCCCCCEEEEE
Confidence 4677887654 4556788877554 588888888889998887667778889999999876
No 165
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=79.72 E-value=0.73 Score=44.72 Aligned_cols=25 Identities=36% Similarity=0.789 Sum_probs=20.7
Q ss_pred cccCCCCcchhhHHHhhcCCHHHHH
Q psy7711 115 LNNLGNTCYMNAVIQCLKTVPELRK 139 (577)
Q Consensus 115 l~n~g~~cy~ns~~q~l~~~p~l~~ 139 (577)
|.|.||.||.|+++|+|+.+-....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~~ 26 (245)
T cd02673 2 LVNTGNSCYFNSTMQALSSIGKINT 26 (245)
T ss_pred ceecCCeeeehhHHHHHHHHhhhhh
Confidence 6899999999999999986554444
No 166
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=79.12 E-value=8.2 Score=29.08 Aligned_cols=60 Identities=13% Similarity=0.302 Sum_probs=46.3
Q ss_pred EEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCccccccccCCCceEEEe
Q psy7711 14 VKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKNDEWDNFKLSNGSMVLLM 79 (577)
Q Consensus 14 i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~~l~~~~~~~~~~i~l~ 79 (577)
+++..+|+.. +++...|+.||=++ .|++++.--+.++|..+..+.+.+.-+++|+.|-++
T Consensus 3 m~i~~ng~~~--e~~~~~tv~dLL~~----l~~~~~~vav~vNg~iVpr~~~~~~~l~~gD~ievv 62 (68)
T COG2104 3 MTIQLNGKEV--EIAEGTTVADLLAQ----LGLNPEGVAVAVNGEIVPRSQWADTILKEGDRIEVV 62 (68)
T ss_pred EEEEECCEEE--EcCCCCcHHHHHHH----hCCCCceEEEEECCEEccchhhhhccccCCCEEEEE
Confidence 5555566644 45555799998665 678888877889998888778888899999999876
No 167
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=78.06 E-value=10 Score=29.64 Aligned_cols=36 Identities=17% Similarity=0.097 Sum_probs=32.9
Q ss_pred EEEEEEeCCeEEEEEeCC--CCCHHHHHHHHHHHhCCC
Q psy7711 12 YIVKVKWGKETFEVDVDT--DEEPMLFKAQLYELTGVQ 47 (577)
Q Consensus 12 ~~i~vk~~~~~~~~~v~~--~~tv~~lk~~i~~~~~v~ 47 (577)
++|++..+|.+..+.+++ +.|..+|++.|....+++
T Consensus 1 V~vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~ 38 (81)
T cd06396 1 VNLKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLN 38 (81)
T ss_pred CEEEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC
Confidence 468899999999999988 669999999999999999
No 168
>KOG3556|consensus
Probab=76.74 E-value=5.2 Score=41.85 Aligned_cols=26 Identities=15% Similarity=0.308 Sum_probs=20.6
Q ss_pred cccccCCCCCchhHHHHHHHhhccHH
Q psy7711 189 LPAGLNNLGNTCYMNAVIQCLKTVPE 214 (577)
Q Consensus 189 ~~~GL~N~GNtCY~NSvLQ~L~~~~~ 214 (577)
...|++-.-|.||+||.|=+++.-..
T Consensus 367 k~kgiqgh~nscyldstlf~~f~f~s 392 (724)
T KOG3556|consen 367 KIKGIQGHPNSCYLDSTLFKPFEFDS 392 (724)
T ss_pred ccccccCCcchhhccccccccccccc
Confidence 34788888899999999988876443
No 169
>PRK07440 hypothetical protein; Provisional
Probab=76.64 E-value=13 Score=28.23 Aligned_cols=60 Identities=15% Similarity=0.210 Sum_probs=45.8
Q ss_pred EEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCccccccccCCCceEEEe
Q psy7711 14 VKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKNDEWDNFKLSNGSMVLLM 79 (577)
Q Consensus 14 i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~~l~~~~~~~~~~i~l~ 79 (577)
++|+-+|+.+. +....||.+|-.+ .+++++.--+-++|.++..+.|.+.-|++|++|-++
T Consensus 5 m~i~vNG~~~~--~~~~~tl~~lL~~----l~~~~~~vav~~N~~iv~r~~w~~~~L~~gD~IEIv 64 (70)
T PRK07440 5 ITLQVNGETRT--CSSGTSLPDLLQQ----LGFNPRLVAVEYNGEILHRQFWEQTQVQPGDRLEIV 64 (70)
T ss_pred eEEEECCEEEE--cCCCCCHHHHHHH----cCCCCCeEEEEECCEEeCHHHcCceecCCCCEEEEE
Confidence 56667887644 4566788887654 567776666668999888778889999999999876
No 170
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=76.21 E-value=9.7 Score=29.39 Aligned_cols=55 Identities=13% Similarity=0.159 Sum_probs=39.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhCC----CCCCceEEecCCccCCccccccccCCCceEEEe
Q psy7711 21 ETFEVDVDTDEEPMLFKAQLYELTGV----QIDRQKVMCKGATLKNDEWDNFKLSNGSMVLLM 79 (577)
Q Consensus 21 ~~~~~~v~~~~tv~~lk~~i~~~~~v----~~~~qkl~~~g~~l~d~~l~~~~~~~~~~i~l~ 79 (577)
....++++...||.+|.++|....+- ....-.+..+|+..+. +.-|++|+.|.++
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~----~~~l~~gD~v~i~ 74 (80)
T cd00754 16 DEEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVRL----DTPLKDGDEVAII 74 (80)
T ss_pred ceEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCC----CcccCCCCEEEEe
Confidence 34677887789999999999987642 2233345568877763 3458999999887
No 171
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=75.68 E-value=1.3 Score=42.48 Aligned_cols=20 Identities=60% Similarity=1.046 Sum_probs=19.1
Q ss_pred ccccCCCCcchhhHHHhhcC
Q psy7711 114 GLNNLGNTCYMNAVIQCLKT 133 (577)
Q Consensus 114 gl~n~g~~cy~ns~~q~l~~ 133 (577)
||.|.||||.+|++.|+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (228)
T cd02665 1 GLKNVGNTCWFSAVIQSLFS 20 (228)
T ss_pred CccccCcchhHHHHHHHHHH
Confidence 79999999999999999987
No 172
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=75.44 E-value=11 Score=30.38 Aligned_cols=60 Identities=28% Similarity=0.446 Sum_probs=45.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEE-ecCCc---------cCCc-cccccccCCCceEEEec
Q psy7711 21 ETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVM-CKGAT---------LKND-EWDNFKLSNGSMVLLMG 80 (577)
Q Consensus 21 ~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~-~~g~~---------l~d~-~l~~~~~~~~~~i~l~g 80 (577)
.++.+.|++++|=.++|+++++++||.+..-..| .+|+. +..+ .-....++.|..|-+.|
T Consensus 22 nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNTl~~k~k~KR~~~k~~G~~~~~kka~V~l~~G~~i~~~~ 92 (94)
T COG0089 22 NKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTLNTKGKTKRAGVKRIGLRKDYKKAYVTLKEGQSIDFFG 92 (94)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEeCCcceEEeccccccCcccceeEEEccCCCEEeecc
Confidence 6799999999999999999999999999988865 45531 3444 55555677777765544
No 173
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=73.04 E-value=12 Score=27.99 Aligned_cols=59 Identities=12% Similarity=0.144 Sum_probs=44.3
Q ss_pred EEEeCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCCCCceEEecCCccCCccccccccCCCceEEEe
Q psy7711 15 KVKWGKETFEVDVDTD-EEPMLFKAQLYELTGVQIDRQKVMCKGATLKNDEWDNFKLSNGSMVLLM 79 (577)
Q Consensus 15 ~vk~~~~~~~~~v~~~-~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~~l~~~~~~~~~~i~l~ 79 (577)
+|+-+|+.+.++ .. .||.+|-+. .++++.+--+-++|.+++.+.|.+.-|++|++|-++
T Consensus 2 ~I~vNG~~~~~~--~~~~tv~~lL~~----l~~~~~~vav~vN~~iv~r~~w~~~~L~~gD~iEIv 61 (67)
T PRK07696 2 NLKINGNQIEVP--ESVKTVAELLTH----LELDNKIVVVERNKDILQKDDHTDTSVFDGDQIEIV 61 (67)
T ss_pred EEEECCEEEEcC--CCcccHHHHHHH----cCCCCCeEEEEECCEEeCHHHcCceecCCCCEEEEE
Confidence 456678766554 33 577776543 578777666678999998888999999999999876
No 174
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=72.10 E-value=17 Score=27.09 Aligned_cols=59 Identities=8% Similarity=0.250 Sum_probs=43.0
Q ss_pred EEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCccccccccCCCceEEEe
Q psy7711 15 KVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKNDEWDNFKLSNGSMVLLM 79 (577)
Q Consensus 15 ~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~~l~~~~~~~~~~i~l~ 79 (577)
+|.-+|+.+++ +...||.+|-.+ .++++..-.+-.+|..+..+.+.+.-|++|++|-++
T Consensus 2 ~i~vNg~~~~~--~~~~tl~~ll~~----l~~~~~~vaVavN~~iv~r~~w~~~~L~~gD~Ieii 60 (66)
T PRK08053 2 QILFNDQPMQC--AAGQTVHELLEQ----LNQLQPGAALAINQQIIPREQWAQHIVQDGDQILLF 60 (66)
T ss_pred EEEECCeEEEc--CCCCCHHHHHHH----cCCCCCcEEEEECCEEeChHHcCccccCCCCEEEEE
Confidence 34557776665 456688888765 455555555567898887667888889999999887
No 175
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=71.33 E-value=23 Score=37.68 Aligned_cols=71 Identities=17% Similarity=0.286 Sum_probs=56.7
Q ss_pred EEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCC----CCCCce--EE-ecCCccCCc-cccccccCCCceEEEeccc
Q psy7711 12 YIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGV----QIDRQK--VM-CKGATLKND-EWDNFKLSNGSMVLLMGSK 82 (577)
Q Consensus 12 ~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v----~~~~qk--l~-~~g~~l~d~-~l~~~~~~~~~~i~l~gs~ 82 (577)
.+|+|....+..++-++.+.+|.+|--.|-...+= +..... |- ..|..|+.+ +|.+.+|.+|+.++|.-..
T Consensus 3 ~RVtV~~~~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~~ 81 (452)
T TIGR02958 3 CRVTVLAGRRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPAS 81 (452)
T ss_pred EEEEEeeCCeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeCC
Confidence 47889988888999999999999999999888763 222222 22 356789988 9999999999999998543
No 176
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=70.76 E-value=22 Score=26.18 Aligned_cols=58 Identities=14% Similarity=0.165 Sum_probs=40.5
Q ss_pred EEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCccccccccCCCceEEEe
Q psy7711 15 KVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKNDEWDNFKLSNGSMVLLM 79 (577)
Q Consensus 15 ~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~~l~~~~~~~~~~i~l~ 79 (577)
+|..+|+.+++ +...|+.+|-+++ +++ .+-.+.++|..+..+.+.+.-|++|++|-++
T Consensus 2 ~i~vNg~~~~~--~~~~tl~~ll~~l----~~~-~~~~v~vN~~~v~~~~~~~~~L~~gD~vei~ 59 (65)
T PRK06944 2 DIQLNQQTLSL--PDGATVADALAAY----GAR-PPFAVAVNGDFVARTQHAARALAAGDRLDLV 59 (65)
T ss_pred EEEECCEEEEC--CCCCcHHHHHHhh----CCC-CCeEEEECCEEcCchhcccccCCCCCEEEEE
Confidence 45667775544 5567899887765 443 2345567888776556667779999999887
No 177
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=70.57 E-value=34 Score=24.74 Aligned_cols=52 Identities=17% Similarity=0.330 Sum_probs=37.4
Q ss_pred EEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCccccccccCCCceEEEe
Q psy7711 16 VKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKNDEWDNFKLSNGSMVLLM 79 (577)
Q Consensus 16 vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~~l~~~~~~~~~~i~l~ 79 (577)
|+-+++. +++..+.|+.+||.++.... =-++++|=..++| +-|++|+.|.++
T Consensus 3 I~vN~k~--~~~~~~~tl~~lr~~~k~~~------DI~I~NGF~~~~d----~~L~e~D~v~~I 54 (57)
T PF14453_consen 3 IKVNEKE--IETEENTTLFELRKESKPDA------DIVILNGFPTKED----IELKEGDEVFLI 54 (57)
T ss_pred EEECCEE--EEcCCCcCHHHHHHhhCCCC------CEEEEcCcccCCc----cccCCCCEEEEE
Confidence 4445554 45566779999999976533 3578999777766 237999999987
No 178
>KOG4361|consensus
Probab=68.83 E-value=2.3 Score=42.80 Aligned_cols=75 Identities=13% Similarity=0.179 Sum_probs=61.3
Q ss_pred CceEEEEEEeCCeEEEEEeCCCCCHH---HHHHHHHHHhCCCCCCc--eEEecCCccCCc--cccccccCCCceEEEecc
Q psy7711 9 PHTYIVKVKWGKETFEVDVDTDEEPM---LFKAQLYELTGVQIDRQ--KVMCKGATLKND--EWDNFKLSNGSMVLLMGS 81 (577)
Q Consensus 9 ~~~~~i~vk~~~~~~~~~v~~~~tv~---~lk~~i~~~~~v~~~~q--kl~~~g~~l~d~--~l~~~~~~~~~~i~l~gs 81 (577)
+..+.|.+..+..-+.+.+.+..+.+ +++......+|+.-..| |++|.++.++|. .+...++++-++|.++-.
T Consensus 59 p~~~~v~~~~~~~~~~~~i~p~~~~g~~~d~a~~~~~~ag~sh~d~~~k~~y~~~e~rd~~l~l~~~g~p~~sk~~~~~~ 138 (344)
T KOG4361|consen 59 PFGIRVQIEYGQLGHGLAIVPQYPSGNALDLAKPLTEDAGLSHYDQEVKLVYVDKELRDQSLRLSSAGVPDASKINVVPD 138 (344)
T ss_pred CCCccceeeecccccccccccccccccchhhhcccccccceeecccccccceecccccccccccccccCcccccceeccC
Confidence 44677888877666677777766666 89999999999887777 999999999988 899999999999999855
Q ss_pred cc
Q psy7711 82 KE 83 (577)
Q Consensus 82 ~~ 83 (577)
..
T Consensus 139 ~~ 140 (344)
T KOG4361|consen 139 PG 140 (344)
T ss_pred hh
Confidence 43
No 179
>KOG4250|consensus
Probab=68.12 E-value=9.7 Score=41.82 Aligned_cols=41 Identities=17% Similarity=0.266 Sum_probs=37.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCc
Q psy7711 19 GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGAT 59 (577)
Q Consensus 19 ~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~ 59 (577)
....+.+-++++.|+..|++.|+..||||.+.|-|+|.|+.
T Consensus 323 ~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~ 363 (732)
T KOG4250|consen 323 QATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGL 363 (732)
T ss_pred cceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCc
Confidence 44678899999999999999999999999999999998753
No 180
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=67.73 E-value=18 Score=27.96 Aligned_cols=43 Identities=12% Similarity=-0.041 Sum_probs=34.3
Q ss_pred EEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEe
Q psy7711 13 IVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMC 55 (577)
Q Consensus 13 ~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~ 55 (577)
+.+||++|..-.+.++.+-|...|+++|..++.+|++.--|.|
T Consensus 2 ~fKv~~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtY 44 (82)
T cd06397 2 QFKSSFLGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTY 44 (82)
T ss_pred eEEEEeCCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEE
Confidence 4678999866555566566899999999999999998755555
No 181
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=67.11 E-value=25 Score=28.17 Aligned_cols=44 Identities=20% Similarity=0.207 Sum_probs=34.1
Q ss_pred EEEEEeCCeEEEEEeC-----CCCCHHHHHHHHHHHhCCCCCCce-EEec
Q psy7711 13 IVKVKWGKETFEVDVD-----TDEEPMLFKAQLYELTGVQIDRQK-VMCK 56 (577)
Q Consensus 13 ~i~vk~~~~~~~~~v~-----~~~tv~~lk~~i~~~~~v~~~~qk-l~~~ 56 (577)
.|+|++++...-+.++ ++.+..+|+.+|.+.++++++..- |-|+
T Consensus 2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~ 51 (91)
T cd06398 2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYT 51 (91)
T ss_pred EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEE
Confidence 4888999977666666 468999999999999999984433 4454
No 182
>PRK01777 hypothetical protein; Validated
Probab=66.93 E-value=30 Score=28.04 Aligned_cols=64 Identities=16% Similarity=0.020 Sum_probs=44.3
Q ss_pred CceEEEEEEeCC-eE---EEEEeCCCCCHHHHHHHHHHHhCCCCC-------CceEEecCCccCCccccccccCCCceEE
Q psy7711 9 PHTYIVKVKWGK-ET---FEVDVDTDEEPMLFKAQLYELTGVQID-------RQKVMCKGATLKNDEWDNFKLSNGSMVL 77 (577)
Q Consensus 9 ~~~~~i~vk~~~-~~---~~~~v~~~~tv~~lk~~i~~~~~v~~~-------~qkl~~~g~~l~d~~l~~~~~~~~~~i~ 77 (577)
|.+|+|.|-+.. .. ..+++....||.+.=.++ |++.+ .-++...|+..+-| .-|++|+.|-
T Consensus 1 ~~~i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~s----gi~~~~pei~~~~~~vgI~Gk~v~~d----~~L~dGDRVe 72 (95)
T PRK01777 1 MGKIRVEVVYALPERQYLQRLTLQEGATVEEAIRAS----GLLELRTDIDLAKNKVGIYSRPAKLT----DVLRDGDRVE 72 (95)
T ss_pred CCeeEEEEEEECCCceEEEEEEcCCCCcHHHHHHHc----CCCccCcccccccceEEEeCeECCCC----CcCCCCCEEE
Confidence 346888888632 22 468899999998875553 66555 24667788776544 2489999998
Q ss_pred Eec
Q psy7711 78 LMG 80 (577)
Q Consensus 78 l~g 80 (577)
+..
T Consensus 73 Iyr 75 (95)
T PRK01777 73 IYR 75 (95)
T ss_pred Eec
Confidence 873
No 183
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=66.72 E-value=13 Score=28.29 Aligned_cols=57 Identities=19% Similarity=0.165 Sum_probs=44.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCC--CCCCceEEecCCccCCccccccccCCCceEEEe
Q psy7711 22 TFEVDVDTDEEPMLFKAQLYELTGV--QIDRQKVMCKGATLKNDEWDNFKLSNGSMVLLM 79 (577)
Q Consensus 22 ~~~~~v~~~~tv~~lk~~i~~~~~v--~~~~qkl~~~g~~l~d~~l~~~~~~~~~~i~l~ 79 (577)
...+.+....||.+|.+++....+- ....-.+..+|....+ .+.+..|++|+.|.++
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~-~~~~~~l~~gD~V~i~ 71 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD-DGLDTPLKDGDEVAIL 71 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG-GTTTSBEETTEEEEEE
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC-ccCCcCcCCCCEEEEE
Confidence 4567788889999999999877631 2255556689988887 6667789999999987
No 184
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=65.10 E-value=30 Score=27.30 Aligned_cols=56 Identities=11% Similarity=0.146 Sum_probs=37.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhC-----CCC------CCceEEecCCccCCccccccccCCCceEEEe
Q psy7711 21 ETFEVDVDTDEEPMLFKAQLYELTG-----VQI------DRQKVMCKGATLKNDEWDNFKLSNGSMVLLM 79 (577)
Q Consensus 21 ~~~~~~v~~~~tv~~lk~~i~~~~~-----v~~------~~qkl~~~g~~l~d~~l~~~~~~~~~~i~l~ 79 (577)
....|+++ ..||.+|.+.|.+..+ +-. ..-.+..+|+....+.. .-|++|+.|.++
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~--~~l~dgdev~i~ 82 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG--TELKDGDVVAIF 82 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC--CCCCCCCEEEEe
Confidence 44667776 7899999999988863 111 12334567766654421 568999999887
No 185
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=62.05 E-value=34 Score=26.43 Aligned_cols=54 Identities=11% Similarity=0.123 Sum_probs=37.4
Q ss_pred EEEEEeCCC-CCHHHHHHHHHHHhC-CCC--CCceEEecCCccCCccccccccCCCceEEEe
Q psy7711 22 TFEVDVDTD-EEPMLFKAQLYELTG-VQI--DRQKVMCKGATLKNDEWDNFKLSNGSMVLLM 79 (577)
Q Consensus 22 ~~~~~v~~~-~tv~~lk~~i~~~~~-v~~--~~qkl~~~g~~l~d~~l~~~~~~~~~~i~l~ 79 (577)
...++++.+ .||.+|++.|.+..+ +-. ..-.+..+|+...+ +.-|++|+.|-++
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~----~~~l~dgDevai~ 74 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD----DALLNEGDEVAFI 74 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC----CcCcCCCCEEEEe
Confidence 346788876 899999999988864 111 12234466766553 4468999999887
No 186
>CHL00030 rpl23 ribosomal protein L23
Probab=61.21 E-value=23 Score=28.49 Aligned_cols=39 Identities=18% Similarity=0.183 Sum_probs=33.4
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEE-ecCC
Q psy7711 20 KETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVM-CKGA 58 (577)
Q Consensus 20 ~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~-~~g~ 58 (577)
...|.+.|+.++|=.++|++|+.++||.+..-..+ .+|+
T Consensus 19 ~n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~~k 58 (93)
T CHL00030 19 KNQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLPRK 58 (93)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcCCC
Confidence 46799999999999999999999999998887754 4553
No 187
>KOG2982|consensus
Probab=60.76 E-value=13 Score=36.63 Aligned_cols=66 Identities=21% Similarity=0.207 Sum_probs=47.1
Q ss_pred EEEEEeCC-eE-EEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEe---cCCcc-----CCc-cccccccCCCceEEE
Q psy7711 13 IVKVKWGK-ET-FEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMC---KGATL-----KND-EWDNFKLSNGSMVLL 78 (577)
Q Consensus 13 ~i~vk~~~-~~-~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~---~g~~l-----~d~-~l~~~~~~~~~~i~l 78 (577)
.|++-..+ +. -..-|+-.-||.||+..+..+-||.+.|+||.+ .||.- ... .|-.++|.+|+.+.+
T Consensus 338 rvk~l~~~~~v~~s~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lv 414 (418)
T KOG2982|consen 338 RVKALNSGPKVIASGLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLV 414 (418)
T ss_pred eeeeeccCCccccceEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeee
Confidence 34444443 22 234555566999999999999999999999976 35432 122 678889999998865
No 188
>PF01473 CW_binding_1: Putative cell wall binding repeat; InterPro: IPR018337 The cell wall-binding repeat (CW) is an about 20 amino acid residue module, essentially found in two bacterial Gram-positive protein families; the choline binding proteins and glucosyltransferases (2.4.1.5 from EC). In choline-binding proteins cell wall binding repeats bind to choline moieties of both teichoic and lipoteichoic acids, two components peculiar to the cell surface of Gram-positive bacteria [, ]. In glucosyltransferases the region spanning the CW repeats is a glucan binding domain []. Several crystal structures of CW have been solved [, ]. In the choline binding protein LytA, the repeats adopt a solenoid fold consisting exclusively of beta-hairpins that stack to form a left-handed superhelix with a boomerang-like shape. The choline groups bind between beta-hairpin 'steps' of the superhelix []. In Cpl-1 CW repeats assemble in two sub-domains: an N-terminal superhelical moiety similar to the LytA one and a C-terminal beta-sheet involved in interactions with the lysozyme domain. Choline is bound between repeats 1 and 2, and, 2 and 3 of the superhelical sub-domain []. Some proteins known to contain cell-wall binding repeats include: Pneumococcal N-acetylmuramoyl-L-alanine amidase (autolysin, lytA) (3.5.1.28 from EC). It is a surface-exposed enzyme that rules the self-destruction of pneumococcal cells through degradation of their peptidoglycan backbone. It mediates the release of toxic substances that damage the host tissues. Pneumococcal endo-beta-N-acetylglucosaminidase (lytB) (3.2.1.96 from EC). It plays an important role in cell wall degradation and cell separation. Pneumococcal teichoic acid phosphorylcholine esterase (pce or cbpE), a cell wall hydrolase important for cellular adhesion and colonisation. Lactobacillales glucosyltransferase. It catalyses the transfer of glucosyl units from the cleavage of sucrose to a growing chain of glucan. Clostridium difficile toxin A (tcdA) and toxin B (tcdb). They are the causative agents of the antibiotic-associated pseudomembranous colitis. They are intracellular acting toxins that reach their targets after receptor-mediated endocytosis. Clostridium acetobutylicum cspA protein. Siphoviridae bacteriophages N-acetylmuramoyl-L-alanine amidase. It lyses the bacterial host cell wall. Podoviridae lysozyme protein (cpl-1). It is capable of digesting the pneumococcal cell wall. The cell wall binding repeats are also known as the choline-binding repeats (ChBr) or the choline-binding domain (ChBD). ; PDB: 1GVM_C 2BML_B 1HCX_A 1OBA_A 1H09_A 2J8F_A 2IXU_A 2J8G_A 2IXV_A 2X8O_A ....
Probab=59.78 E-value=9.1 Score=20.64 Aligned_cols=15 Identities=47% Similarity=1.143 Sum_probs=12.1
Q ss_pred EEEECCCCcEEEEeCC
Q psy7711 542 AWVKKPNGTWIKCDDD 557 (577)
Q Consensus 542 a~vr~~~~~W~~~nD~ 557 (577)
.|++. ++.||.|+++
T Consensus 2 ~W~~~-~~~wYy~~~~ 16 (19)
T PF01473_consen 2 GWVQD-NGNWYYFDSD 16 (19)
T ss_dssp EEEEE-TTEEEEETTT
T ss_pred cCEEE-CCEEEEeCCC
Confidence 47777 7999999875
No 189
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=55.73 E-value=52 Score=33.57 Aligned_cols=69 Identities=20% Similarity=0.286 Sum_probs=50.6
Q ss_pred EEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHh--CCCCCCceEEe----cCC---ccCCccccccccCCCceEEEecc
Q psy7711 13 IVKVKWGKETFEVDVDTDEEPMLFKAQLYELT--GVQIDRQKVMC----KGA---TLKNDEWDNFKLSNGSMVLLMGS 81 (577)
Q Consensus 13 ~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~--~v~~~~qkl~~----~g~---~l~d~~l~~~~~~~~~~i~l~gs 81 (577)
-+.++.......+++.++++++.|-.+|-.-. +..|++--+-- +|- .|+|-++.++|++.|+.++|-=|
T Consensus 2 i~rfRsk~G~~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~ys 79 (571)
T COG5100 2 IFRFRSKEGQRRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEYS 79 (571)
T ss_pred eEEEecCCCceeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEec
Confidence 45666666788999999999999998887654 45566544432 232 35555999999999999998653
No 190
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=54.24 E-value=58 Score=25.72 Aligned_cols=68 Identities=7% Similarity=0.089 Sum_probs=53.3
Q ss_pred EEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEe
Q psy7711 12 YIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLM 79 (577)
Q Consensus 12 ~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~ 79 (577)
|.++|.- .+...-+.|-.+.|...|-.+....-|-..+..|++|.|+-+.-+ +-.+++..+|+.|-.+
T Consensus 25 inLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav 94 (103)
T COG5227 25 INLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAV 94 (103)
T ss_pred cceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHH
Confidence 5555553 345556677777889999889999999999999999999888877 8888888888766443
No 191
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=50.64 E-value=36 Score=27.33 Aligned_cols=39 Identities=23% Similarity=0.408 Sum_probs=33.9
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEE-ecCC
Q psy7711 20 KETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVM-CKGA 58 (577)
Q Consensus 20 ~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~-~~g~ 58 (577)
...+.+.|++.+|=.++|+.|+.++||++..-.-+ ..|+
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk 59 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGK 59 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCc
Confidence 46799999999999999999999999999988754 5554
No 192
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=50.04 E-value=52 Score=25.76 Aligned_cols=38 Identities=11% Similarity=0.128 Sum_probs=33.4
Q ss_pred EEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q psy7711 12 YIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQID 49 (577)
Q Consensus 12 ~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~ 49 (577)
++|++..+|..+...+++..|...|.+++.+..+.+.+
T Consensus 1 i~~K~~y~gdi~it~~d~~~s~e~L~~~v~~~c~~~~~ 38 (83)
T cd06404 1 VRVKAAYNGDIMITSIDPSISLEELCNEVRDMCRFHND 38 (83)
T ss_pred CeEEEEecCcEEEEEcCCCcCHHHHHHHHHHHhCCCCC
Confidence 46888899999999999999999999999999987554
No 193
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=50.00 E-value=25 Score=28.18 Aligned_cols=39 Identities=18% Similarity=0.388 Sum_probs=33.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEE-ecCCc
Q psy7711 21 ETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVM-CKGAT 59 (577)
Q Consensus 21 ~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~-~~g~~ 59 (577)
..+.+.|+++.|=.++|+.|+.++||++..-+.+ +.|+.
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~ 60 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKK 60 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCc
Confidence 5689999999999999999999999999888865 56653
No 194
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=49.52 E-value=52 Score=26.09 Aligned_cols=42 Identities=10% Similarity=-0.051 Sum_probs=33.5
Q ss_pred EEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---CceEEe
Q psy7711 14 VKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQID---RQKVMC 55 (577)
Q Consensus 14 i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~---~qkl~~ 55 (577)
+++|. .|..+.+.+.++..+.+|++.|..+.|+..+ .-.|.|
T Consensus 3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY 48 (86)
T ss_pred EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence 34554 5688899999999999999999999999985 444444
No 195
>PF02099 Josephin: Josephin; InterPro: IPR006155 Human genes containing triplet repeats can markedly expand in length, leading to neuropsychiatric disease. Expansion of triplet repeats explains the phenomenon of anticipation, i.e. the increasing severity or earlier age of onset in successive generations in a pedigree []. A novel gene containing CAG repeats has been identified and mapped to chromosome 14q32.1, the genetic locus for Machado-Joseph disease (MJD). Normally, the gene contains 13-36 CAG repeats, but most clinically diagnosed patients and all affected members of a family with the clinical and pathological diagnosis of MJD show expansion of the repeat number, from 68-79 []. Similar abnormalities in related genes may give rise to diseases similar to MJD. MJD is a neurodegenerative disorder characterised by cerebellar ataxia, pyramidal and extra-pyramidal signs, peripheral nerve palsy, external ophtalmoplegia, facial and lingual fasciculation and bulging. The disease is autosomal dominant, with late onset of symptoms, generally after the fourth decade.; GO: 0008242 omega peptidase activity; PDB: 3O65_G 1YZB_A 2JRI_A 2DOS_A 2AGA_A.
Probab=48.80 E-value=20 Score=32.07 Aligned_cols=33 Identities=24% Similarity=0.392 Sum_probs=26.5
Q ss_pred EEeEEEEeecCCCCCCceEEEEECCCCcEEEEeCCccee
Q psy7711 523 TLQAVLTHKGRTSSSGHYVAWVKKPNGTWIKCDDDKVYP 561 (577)
Q Consensus 523 ~L~aVI~H~G~s~~~GHY~a~vr~~~~~W~~~nD~~V~~ 561 (577)
...|+|++.++ |++|..|- ++.||-+|=..-.+
T Consensus 98 ~~~gfI~N~~~-----HWf~iRki-~~~wyNLDS~l~~P 130 (157)
T PF02099_consen 98 NEFGFICNLSR-----HWFAIRKI-GGQWYNLDSKLKEP 130 (157)
T ss_dssp CSSEEEEECTT-----EEEEEEEE-TTEEEEECTTTSS-
T ss_pred hceEEEeccCc-----ceEEEEee-CCeeEeccCCCCCC
Confidence 34799999776 99999998 99999998755443
No 196
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=48.27 E-value=46 Score=33.47 Aligned_cols=59 Identities=14% Similarity=0.192 Sum_probs=46.8
Q ss_pred EEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCccccccccCCCceEEEe
Q psy7711 15 KVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKNDEWDNFKLSNGSMVLLM 79 (577)
Q Consensus 15 ~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~~l~~~~~~~~~~i~l~ 79 (577)
+|+-+|+.+++ +...||.+|-.+ .+++++.-.+.++|.+++.+.|.+.-|++|++|-++
T Consensus 2 ~I~VNGk~~el--~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVpr~~w~~t~LkeGD~IEII 60 (326)
T PRK11840 2 RIRLNGEPRQV--PAGLTIAALLAE----LGLAPKKVAVERNLEIVPRSEYGQVALEEGDELEIV 60 (326)
T ss_pred EEEECCEEEec--CCCCcHHHHHHH----cCCCCCeEEEEECCEECCHHHcCccccCCCCEEEEE
Confidence 45667776554 556788877654 588888888889999998778899999999999887
No 197
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=47.15 E-value=42 Score=26.29 Aligned_cols=52 Identities=15% Similarity=0.240 Sum_probs=39.9
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEE-ecCCccCCccccccccCCCceEEEe
Q psy7711 20 KETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVM-CKGATLKNDEWDNFKLSNGSMVLLM 79 (577)
Q Consensus 20 ~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~-~~g~~l~d~~l~~~~~~~~~~i~l~ 79 (577)
+..+.++++..+||+++=+. .|||...-.++ .+|+...- ++-+++|+.|.+-
T Consensus 22 ~~~~~~~~~~~~tvkd~IEs----LGVP~tEV~~i~vNG~~v~~----~~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVIES----LGVPHTEVGLILVNGRPVDF----DYRLKDGDRVAVY 74 (81)
T ss_pred CCceEEecCCCCcHHHHHHH----cCCChHHeEEEEECCEECCC----cccCCCCCEEEEE
Confidence 34577889999999987554 89999999986 57765432 4568999999876
No 198
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=45.60 E-value=73 Score=23.39 Aligned_cols=64 Identities=16% Similarity=0.266 Sum_probs=46.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHh---CCCCCCceEEe-cCCccCCc-cccccccCCCceEEEeccc
Q psy7711 19 GKETFEVDVDTDEEPMLFKAQLYELT---GVQIDRQKVMC-KGATLKND-EWDNFKLSNGSMVLLMGSK 82 (577)
Q Consensus 19 ~~~~~~~~v~~~~tv~~lk~~i~~~~---~v~~~~qkl~~-~g~~l~d~-~l~~~~~~~~~~i~l~gs~ 82 (577)
+|+-.+|+.++..++-...++--+.+ |-|++.=.|-- .|..|+-+ .+.++|+.+|.|+.|.-.+
T Consensus 4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLKA 72 (76)
T PF10790_consen 4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLKA 72 (76)
T ss_pred CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEeec
Confidence 45556788888887777666555554 46788766653 56777767 8999999999999986443
No 199
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=45.26 E-value=1.3e+02 Score=24.85 Aligned_cols=70 Identities=24% Similarity=0.274 Sum_probs=44.9
Q ss_pred ceEEEEEEeCC--eEEEEEeCCCCCHHHHHHHHHHHh---CCCCCCc---e-EEecCCc--cCCc-ccccc-----ccCC
Q psy7711 10 HTYIVKVKWGK--ETFEVDVDTDEEPMLFKAQLYELT---GVQIDRQ---K-VMCKGAT--LKND-EWDNF-----KLSN 72 (577)
Q Consensus 10 ~~~~i~vk~~~--~~~~~~v~~~~tv~~lk~~i~~~~---~v~~~~q---k-l~~~g~~--l~d~-~l~~~-----~~~~ 72 (577)
..+.|.|.+.+ ..+.+.+++++|+.+|-+.+..+. .-+.+.+ = |-..|+. |-.+ .|.++ .++.
T Consensus 16 ~~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~ 95 (108)
T smart00144 16 NKILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKN 95 (108)
T ss_pred CeEEEEEEEccCceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhc
Confidence 35788888865 668999999999999998887761 1112222 2 2245642 4444 66666 4666
Q ss_pred CceEEEe
Q psy7711 73 GSMVLLM 79 (577)
Q Consensus 73 ~~~i~l~ 79 (577)
|..++|+
T Consensus 96 ~~~~~L~ 102 (108)
T smart00144 96 GREPHLV 102 (108)
T ss_pred CCCceEE
Confidence 6666654
No 200
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=45.17 E-value=50 Score=25.57 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=32.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecC
Q psy7711 22 TFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKG 57 (577)
Q Consensus 22 ~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g 57 (577)
++.|.+.+..+..+|...|.++...++++-+|-|+-
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~ 43 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRA 43 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecC
Confidence 345778899999999999999999999999998864
No 201
>KOG2561|consensus
Probab=43.82 E-value=11 Score=38.83 Aligned_cols=72 Identities=11% Similarity=0.069 Sum_probs=57.8
Q ss_pred ceEEEEEEeCC---eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEecc
Q psy7711 10 HTYIVKVKWGK---ETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGS 81 (577)
Q Consensus 10 ~~~~i~vk~~~---~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs 81 (577)
++++|..-..+ .+..++...+-|..+|...|++..||+-..-|.+.+||+|.-. +|.+=|++.+..+|++-.
T Consensus 36 at~~Vrlv~~~k~~~m~l~k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq~~mv~~~ 111 (568)
T KOG2561|consen 36 ATESVRLVFAGKGDRMNLKKCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQELMVAVG 111 (568)
T ss_pred cceeeEeccccccchhhhhhcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhhhHHHHHhc
Confidence 34555544333 2234667777899999999999999999999999999999888 999999999999988733
No 202
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=43.81 E-value=71 Score=28.48 Aligned_cols=64 Identities=14% Similarity=0.220 Sum_probs=46.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEE-ecCCccC--------Cc-cccccccCCCceEEEeccccC
Q psy7711 21 ETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVM-CKGATLK--------ND-EWDNFKLSNGSMVLLMGSKEE 84 (577)
Q Consensus 21 ~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~-~~g~~l~--------d~-~l~~~~~~~~~~i~l~gs~~~ 84 (577)
..|.+.|+++.|=.++|..|+.++||.+..-..+ ..|+.-. .+ .-.=..|.+|++|-++....+
T Consensus 23 N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~~~K~KR~g~~~G~~~~~KKAiVtL~~g~~I~~f~~~~~ 96 (158)
T PRK12280 23 NVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNVDKKPKRLGRFPGFTNSYKKAYVTLAEGYSINLFPEESE 96 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEecCCcccccCCcccccCCcEEEEEECCCCCEeeccCCcch
Confidence 5799999999999999999999999999888765 4542211 12 222235788888887765443
No 203
>KOG2026|consensus
Probab=41.02 E-value=16 Score=37.07 Aligned_cols=34 Identities=38% Similarity=0.372 Sum_probs=30.4
Q ss_pred CCcccccCCCCcchhhHHHhhcCCHHHHHHHHhh
Q psy7711 111 LPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNL 144 (577)
Q Consensus 111 ~~~gl~n~g~~cy~ns~~q~l~~~p~l~~~~~~~ 144 (577)
...||.|+-.+=|.|+++|.+.+.+++|.+++.-
T Consensus 133 G~VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~ 166 (442)
T KOG2026|consen 133 GFVGLNNIKANDYANAVLQALSHVVPLRNYFLLE 166 (442)
T ss_pred eeeccchhhhHHHHHHHHHHHhccchhhhhhccc
Confidence 4678999999999999999999999999988743
No 204
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=40.62 E-value=53 Score=25.40 Aligned_cols=34 Identities=15% Similarity=0.203 Sum_probs=31.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEE
Q psy7711 21 ETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVM 54 (577)
Q Consensus 21 ~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~ 54 (577)
..|.+.|+++.|=.++|.+|+.++||.+..-..+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~ 48 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTL 48 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeE
Confidence 5799999999999999999999999999887754
No 205
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=39.41 E-value=55 Score=25.80 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=31.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEE
Q psy7711 21 ETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVM 54 (577)
Q Consensus 21 ~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~ 54 (577)
.+|.+.|++..+=.++|++|+.++||.+..-..+
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~ 55 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTL 55 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeE
Confidence 5799999999999999999999999999887754
No 206
>KOG2086|consensus
Probab=39.19 E-value=79 Score=32.33 Aligned_cols=65 Identities=9% Similarity=0.073 Sum_probs=47.6
Q ss_pred eEEEEEEeC-CeEEEEEeCCCCCHHHHHHHHHHHhC-CCCCCceEE--ecCCccCCc--cccccccCCCce
Q psy7711 11 TYIVKVKWG-KETFEVDVDTDEEPMLFKAQLYELTG-VQIDRQKVM--CKGATLKND--EWDNFKLSNGSM 75 (577)
Q Consensus 11 ~~~i~vk~~-~~~~~~~v~~~~tv~~lk~~i~~~~~-v~~~~qkl~--~~g~~l~d~--~l~~~~~~~~~~ 75 (577)
+=.|-|+.. |+..-..++-.-||.|++.-|...-. -+-.-+-|+ |.-|.|.|+ ||.++||++-.-
T Consensus 305 tTsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvl 375 (380)
T KOG2086|consen 305 TTSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVL 375 (380)
T ss_pred cceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhh
Confidence 455777764 45566678888999999999987743 444456665 566889888 999999987543
No 207
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=37.70 E-value=67 Score=25.23 Aligned_cols=58 Identities=14% Similarity=0.118 Sum_probs=40.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEe
Q psy7711 22 TFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLM 79 (577)
Q Consensus 22 ~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~ 79 (577)
.+...+|-.++++.||.-++.+.++.-+.=.+......|.++ +|-+-+|+-...|-+.
T Consensus 4 vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQln 62 (88)
T PF11620_consen 4 VIMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLN 62 (88)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEE
T ss_pred eEEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEE
Confidence 345667778899999999999999998888888788779988 9999999988777664
No 208
>PF10748 DUF2531: Protein of unknown function (DUF2531); InterPro: IPR019684 This entry represents proteins with unknown function and appears to be restricted to Enterobacteriaceae.
Probab=36.04 E-value=44 Score=28.77 Aligned_cols=32 Identities=19% Similarity=0.813 Sum_probs=26.2
Q ss_pred eEEEeEEEEeecCCCCCCceEEEEECCCCcEEEEeCCc
Q psy7711 521 YYTLQAVLTHKGRTSSSGHYVAWVKKPNGTWIKCDDDK 558 (577)
Q Consensus 521 ~Y~L~aVI~H~G~s~~~GHY~a~vr~~~~~W~~~nD~~ 558 (577)
.++|.|||-+ +++|++|+.++.++|.+.-...
T Consensus 35 ~WrlqGiVg~------~~~~~gwl~~p~g~W~Rv~~g~ 66 (132)
T PF10748_consen 35 QWRLQGIVGQ------GDRWIGWLQDPQGKWLRVRQGQ 66 (132)
T ss_pred cceEccEECC------CCcEEEEEECCCCCeEEeccCC
Confidence 6999999854 4599999999999999875543
No 209
>PF14353 CpXC: CpXC protein
Probab=35.08 E-value=48 Score=28.38 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=26.2
Q ss_pred EEEcCCCCCCCCCcccccceeeeeccCCCccchhHHHhhhhhhhh-hccCcCCCCCce
Q psy7711 328 ELKCSESETEPPTKGTESFQQLSCYITTDVKYMLPGLKNKLQDQI-TKRSPSLDRDAV 384 (577)
Q Consensus 328 ~~~C~~c~~~~~s~~~e~f~~L~l~i~~~~~~l~~~l~~~~~e~i-~~~c~~c~~~~~ 384 (577)
+++|..|++. ...+.+..+.... + ..+.+. -+.+++ ...|+.||....
T Consensus 1 ~itCP~C~~~---~~~~v~~~I~~~~--~-p~l~e~---il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 1 EITCPHCGHE---FEFEVWTSINADE--D-PELKEK---ILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred CcCCCCCCCe---eEEEEEeEEcCcC--C-HHHHHH---HHcCCcCEEECCCCCCcee
Confidence 3689999973 4445444333221 1 112222 234444 357999998753
No 210
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=34.30 E-value=1.3e+02 Score=28.49 Aligned_cols=56 Identities=18% Similarity=0.226 Sum_probs=30.9
Q ss_pred EEEEEeC--C----eEEEEEeCCCCCHHHHHHHHHHHhCCCCC-CceEE----ecCC---ccCCc-ccccc
Q psy7711 13 IVKVKWG--K----ETFEVDVDTDEEPMLFKAQLYELTGVQID-RQKVM----CKGA---TLKND-EWDNF 68 (577)
Q Consensus 13 ~i~vk~~--~----~~~~~~v~~~~tv~~lk~~i~~~~~v~~~-~qkl~----~~g~---~l~d~-~l~~~ 68 (577)
.|+|.|. + +.+.+-|+.+.||.||-.++..+.+++.+ .++|. +.|+ .+..+ .+..+
T Consensus 20 ~~kv~w~~~~~~~~~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l 90 (213)
T PF14533_consen 20 QFKVTWLNDGLKEEQEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL 90 (213)
T ss_dssp -EEEEEE-TTS-EE-EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS
T ss_pred EEEEEEECCCCcceeEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc
Confidence 4556663 3 23678899999999999999999999776 44553 4564 35555 66666
No 211
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=33.70 E-value=1.2e+02 Score=24.75 Aligned_cols=39 Identities=26% Similarity=0.266 Sum_probs=32.3
Q ss_pred EEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEe
Q psy7711 16 VKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMC 55 (577)
Q Consensus 16 vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~ 55 (577)
+++ +|++.-|.|+.+.|..+|+.++.+.++++.. ..|-|
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 566 5577889999999999999999999999877 55433
No 212
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=33.54 E-value=1.8e+02 Score=22.43 Aligned_cols=51 Identities=8% Similarity=0.100 Sum_probs=29.8
Q ss_pred EEeCC-CCCHHHHHHHHHHHhCC-----CCCCceEEecCCccCCccccccccCCCceEEEe
Q psy7711 25 VDVDT-DEEPMLFKAQLYELTGV-----QIDRQKVMCKGATLKNDEWDNFKLSNGSMVLLM 79 (577)
Q Consensus 25 ~~v~~-~~tv~~lk~~i~~~~~v-----~~~~qkl~~~g~~l~d~~l~~~~~~~~~~i~l~ 79 (577)
+++++ ..||.+|++.|.+...- ....-++-.++....+ +.-|++|+.|-++
T Consensus 19 ~~v~~~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~----~~~l~dgDeVai~ 75 (81)
T PRK11130 19 LELAADFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSF----DHPLTDGDEVAFF 75 (81)
T ss_pred EEecCCCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCC----CCCCCCCCEEEEe
Confidence 34433 47999999999887621 1111122234433222 2358999998877
No 213
>KOG1275|consensus
Probab=32.38 E-value=83 Score=35.89 Aligned_cols=53 Identities=26% Similarity=0.301 Sum_probs=39.4
Q ss_pred CcccccCCCCcchhhHHHhhcCCHHHHHHHHhhhCCCCCCCCchhHHHHHHHHHhhhcc
Q psy7711 112 PAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMD 170 (577)
Q Consensus 112 ~~gl~n~g~~cy~ns~~q~l~~~p~l~~~~~~~~~~~~~~~~p~~~~~~~l~~l~~~~~ 170 (577)
-+||.--+..-|+|+++|.++.+|+++.....+. .+...++++.+.-++.-++
T Consensus 499 yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~H~------C~~e~CL~CELGFLF~Ml~ 551 (1118)
T KOG1275|consen 499 YAGLETDIPNSYCNAMIQLLYFLPPIRSIVLRHI------CTKEFCLLCELGFLFTMLD 551 (1118)
T ss_pred eeccCCCCchHHHHHHHHHHHhccHHHHHHHcCc------cchhHHHHHHHHHHHHHHh
Confidence 4567777777889999999999999999887763 3345667776666665444
No 214
>KOG2906|consensus
Probab=31.71 E-value=68 Score=25.81 Aligned_cols=23 Identities=9% Similarity=0.197 Sum_probs=18.2
Q ss_pred hccCcCCCCCceEEEEEEeccCC
Q psy7711 373 TKRSPSLDRDAVYVKTSKVSRLP 395 (577)
Q Consensus 373 ~~~c~~c~~~~~~~k~~~i~~lP 395 (577)
...|++|+.+..|-.+..+.++-
T Consensus 65 ~~~Cp~Cgh~rayF~qlQtRSAD 87 (105)
T KOG2906|consen 65 EATCPTCGHERAYFMQLQTRSAD 87 (105)
T ss_pred cCcCCCCCCCceEEEEeeeccCC
Confidence 45799999999888877776654
No 215
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=31.05 E-value=47 Score=28.19 Aligned_cols=29 Identities=24% Similarity=0.425 Sum_probs=25.0
Q ss_pred EEEEEEeCCeEEEEEeCCCCCHHHHHHHH
Q psy7711 12 YIVKVKWGKETFEVDVDTDEEPMLFKAQL 40 (577)
Q Consensus 12 ~~i~vk~~~~~~~~~v~~~~tv~~lk~~i 40 (577)
|+|+|..+++.+.+++..+.|..+|.++|
T Consensus 1 mkI~i~i~~~~~~a~L~d~~ta~~~~~~L 29 (120)
T PF04126_consen 1 MKIKITIGGQEIEAELNDSPTARAFAAQL 29 (120)
T ss_dssp EEEEEEETTEEEEEEEETTHHHHHHHHC-
T ss_pred CeEEEEECCEEEEEEECCCHHHHHHHHhC
Confidence 78999999999999999888888887775
No 216
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=31.00 E-value=45 Score=24.53 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=26.9
Q ss_pred cCcCCCCCceEEEEEEec--cCCCceEEEEEEEEE
Q psy7711 375 RSPSLDRDAVYVKTSKVS--RLPAYLTIQFVRFFY 407 (577)
Q Consensus 375 ~c~~c~~~~~~~k~~~i~--~lP~~L~i~l~Rf~~ 407 (577)
.|++|+...-..+....+ .+.+++=||.++|.-
T Consensus 6 kCpKCgn~~~~ekei~~tg~~lskifdvq~n~f~~ 40 (68)
T COG3478 6 KCPKCGNTNYEEKEIAATGGGLSKIFDVQNNKFIV 40 (68)
T ss_pred cCCCcCCcchhhceeeccCCCcceeEEecccEEEE
Confidence 499999987777766654 788999999999974
No 217
>KOG4842|consensus
Probab=30.62 E-value=16 Score=34.84 Aligned_cols=47 Identities=6% Similarity=-0.029 Sum_probs=42.4
Q ss_pred eEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecC
Q psy7711 11 TYIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKG 57 (577)
Q Consensus 11 ~~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g 57 (577)
.|++..-|.|..+-++++..++|.|.+..++..++|.++--|+++.+
T Consensus 3 ~i~~~~~~~gn~i~ls~~~~~ri~D~~~~l~K~~~vss~~~kll~~~ 49 (278)
T KOG4842|consen 3 AIKTEGIKSGNAIYLSMAGSQRIPDKNPHLQKVAVVSSKPNKLLALN 49 (278)
T ss_pred cEEEEEEecCcEEEEEeccccccCCCCcccceeeeeccchHHHHhhh
Confidence 36677779999999999999999999999999999999999988876
No 218
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=28.58 E-value=1.6e+02 Score=23.81 Aligned_cols=68 Identities=12% Similarity=0.065 Sum_probs=44.9
Q ss_pred EEEEeCCeEE-EEEeCCCCCHHHHHHHHHHHhCCCCC-CceE-EecC---CccCCc---------cccccccCCCceEEE
Q psy7711 14 VKVKWGKETF-EVDVDTDEEPMLFKAQLYELTGVQID-RQKV-MCKG---ATLKND---------EWDNFKLSNGSMVLL 78 (577)
Q Consensus 14 i~vk~~~~~~-~~~v~~~~tv~~lk~~i~~~~~v~~~-~qkl-~~~g---~~l~d~---------~l~~~~~~~~~~i~l 78 (577)
|.|=....+| ++.+..+.||.++-.++..++.++.. .=+| |.+| ++|... .|...|-++.+.|..
T Consensus 5 IRIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~l~~~~l~RvL~p~ErPl~IqkrlL~q~GY~~~D~l~~ 84 (97)
T cd01775 5 IRVFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLSLKKHDLSRVLRPTEKPLLIQKRLLLQVGYEERDRIED 84 (97)
T ss_pred EEEEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEEEEECCeeeecCCcCCcHHHHHHHHHHcCCCCCCcHHH
Confidence 4443444454 79999999999999999999998874 3333 4455 445432 245556666666666
Q ss_pred ecc
Q psy7711 79 MGS 81 (577)
Q Consensus 79 ~gs 81 (577)
||-
T Consensus 85 lGr 87 (97)
T cd01775 85 IGR 87 (97)
T ss_pred hCc
Confidence 654
No 219
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=27.76 E-value=1.2e+02 Score=28.57 Aligned_cols=39 Identities=26% Similarity=0.262 Sum_probs=29.0
Q ss_pred CceEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCC
Q psy7711 9 PHTYIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQ 47 (577)
Q Consensus 9 ~~~~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~ 47 (577)
+.+.+|++..+|+.+.+++++..|+.++=..-..+||+.
T Consensus 47 ~~~~~i~~~VNG~~~~~~v~~~~tLLd~LR~~l~ltGtK 85 (217)
T PRK11433 47 PEISPVTLKVNGKTEQLEVDTRTTLLDALREHLHLTGTK 85 (217)
T ss_pred CcCceEEEEECCEEEEEecCCCCcHHHHHHHhcCCCCCC
Confidence 335778899999999999999999888655433445544
No 220
>KOG2689|consensus
Probab=27.07 E-value=1.4e+02 Score=29.04 Aligned_cols=68 Identities=12% Similarity=0.176 Sum_probs=53.3
Q ss_pred eEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEE--ecCCccC-Cc---cccccccCCCceEEE
Q psy7711 11 TYIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVM--CKGATLK-ND---EWDNFKLSNGSMVLL 78 (577)
Q Consensus 11 ~~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~--~~g~~l~-d~---~l~~~~~~~~~~i~l 78 (577)
.-+|.|+. .|+++..++.+.+|+.+++..|....++.++==.++ |.-+.+. || +|..+++.+-+.|.|
T Consensus 210 ~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil 284 (290)
T KOG2689|consen 210 QCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL 284 (290)
T ss_pred ceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheec
Confidence 36788998 779999999999999999999999988777545554 4445554 33 788999988887765
No 221
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=26.97 E-value=61 Score=37.45 Aligned_cols=31 Identities=26% Similarity=0.410 Sum_probs=25.7
Q ss_pred EEEEeecCCCCCCceEEEEECCCCcEEEEeC
Q psy7711 526 AVLTHKGRTSSSGHYVAWVKKPNGTWIKCDD 556 (577)
Q Consensus 526 aVI~H~G~s~~~GHY~a~vr~~~~~W~~~nD 556 (577)
-|.+-.|...+|||++..++.+++++|.||-
T Consensus 51 pvltgv~p~~~sghwimlikg~gn~y~lfdp 81 (1439)
T PF12252_consen 51 PVLTGVSPRQDSGHWIMLIKGQGNQYYLFDP 81 (1439)
T ss_pred eeecCcCCCCcCceeEEEEEcCCCceEEecc
Confidence 3444557778999999999999999999984
No 222
>KOG1257|consensus
Probab=26.15 E-value=71 Score=34.15 Aligned_cols=151 Identities=20% Similarity=0.221 Sum_probs=87.4
Q ss_pred HHhCCCCCCceEEecCC-c----cCCc---ccccccc---CCCceEEEeccccC----CCCCCccccccccccchhh---
Q psy7711 42 ELTGVQIDRQKVMCKGA-T----LKND---EWDNFKL---SNGSMVLLMGSKEE----DSMKEPVVKPKFVEDMNES--- 103 (577)
Q Consensus 42 ~~~~v~~~~qkl~~~g~-~----l~d~---~l~~~~~---~~~~~i~l~gs~~~----~~~~~~~~~~~~~ed~~~~--- 103 (577)
..||.|-+.++++|-|. . +.+- .+..-|+ ++-.+|.||-+.+- .....+..+..|..+..+-
T Consensus 302 rit~~~lsd~~ilf~GAG~A~~GIA~l~v~~m~~~Gl~~eeA~kkIwlvD~~GLi~~~r~~~l~~~~~~fAk~~~~~~~L 381 (582)
T KOG1257|consen 302 RITGKPLSDHVILFLGAGEAALGIANLIVMAMVKEGLSEEEARKKIWLVDSKGLITKGRKASLTEEKKPFAKDHEEIKDL 381 (582)
T ss_pred HHhCCccccceEEEecCchHHhhHHHHHHHHHHHcCCCHHHHhccEEEEecCceeeccccCCCChhhccccccChHHHHH
Confidence 34899999999998661 1 0000 1111122 33467888765542 0123444555666655431
Q ss_pred ---HhhhcCCCCcccccCCCCcchhhHHHhhcCCHHHHHHHHhhhCC--CCCCCCchhHHHHHHHHHhhhcccCCCCCCC
Q psy7711 104 ---ERAVSLDLPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGG--LQPGSNPAQSITASLRDLYECMDNMKISPSI 178 (577)
Q Consensus 104 ---~~~~~~~~~~gl~n~g~~cy~ns~~q~l~~~p~l~~~~~~~~~~--~~~~~~p~~~~~~~l~~l~~~~~~~~~~~~~ 178 (577)
-+.-.+.+-.|.+..|+. .+++.-+.+....+. .-+.+||....++.-.+.|..++..-+=.+=
T Consensus 382 ~e~V~~vKPtvLiG~S~~~g~-----------Fteevl~~Ma~~~erPiIFalSNPT~~aECtae~ay~~t~Gr~ifaSG 450 (582)
T KOG1257|consen 382 EEAVKEVKPTVLIGASGVGGA-----------FTEEVLRAMAKSNERPIIFALSNPTSKAECTAEQAYKWTKGRAIFASG 450 (582)
T ss_pred HHHHHhcCCcEEEecccCCcc-----------CCHHHHHHHHhcCCCceEEecCCCccccccCHHHHhhhcCCcEEEecC
Confidence 111223445566666653 245555555544332 2238889988888888888877755444444
Q ss_pred CchhhhcccccccccCCCCCchhHHH
Q psy7711 179 SPFIMLQGRYLPAGLNNLGNTCYMNA 204 (577)
Q Consensus 179 ~~~~~~~~~~~~~GL~N~GNtCY~NS 204 (577)
+||....-. +.++-.+.||+||+=.
T Consensus 451 SPF~pV~~~-gK~~~pgQ~NN~yiFP 475 (582)
T KOG1257|consen 451 SPFPPVEYN-GKVYVPGQGNNAYIFP 475 (582)
T ss_pred CCCCCceeC-CcEecccCCceeEecc
Confidence 566555555 6678889999999843
No 223
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=25.96 E-value=1.2e+02 Score=27.23 Aligned_cols=36 Identities=11% Similarity=0.110 Sum_probs=28.7
Q ss_pred eEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCC
Q psy7711 11 TYIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQ 47 (577)
Q Consensus 11 ~~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~ 47 (577)
++.|+++-+|+.+.++++++.++.++=... .+||+.
T Consensus 6 ~~~i~~~vNG~~~~~~~~~~~~Ll~~LR~~-gltgtK 41 (159)
T PRK09908 6 TITIECTINGMPFQLHAAPGTPLSELLREQ-GLLSVK 41 (159)
T ss_pred ceeEEEEECCEEEEEecCCCCcHHHHHHHc-CCCCCC
Confidence 467889999999999999999998876653 555543
No 224
>COG0093 RplN Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]
Probab=25.61 E-value=1.1e+02 Score=25.57 Aligned_cols=34 Identities=24% Similarity=0.454 Sum_probs=25.3
Q ss_pred EEeEEEEeecCCCCCCceEEEEECCCCcEEEEeCCcceecChh
Q psy7711 523 TLQAVLTHKGRTSSSGHYVAWVKKPNGTWIKCDDDKVYPISEE 565 (577)
Q Consensus 523 ~L~aVI~H~G~s~~~GHY~a~vr~~~~~W~~~nD~~V~~v~~~ 565 (577)
-+.|||+..-. .|.|. +|.|++|||.-.-.++.+
T Consensus 57 V~~AViVRtkk--------~~rR~-DGs~i~FddNA~Viin~~ 90 (122)
T COG0093 57 VVKAVVVRTKK--------EVRRP-DGSYIKFDDNAAVIINPD 90 (122)
T ss_pred eEEEEEEEeCC--------ceEcC-CCCEEEeCCceEEEECCC
Confidence 45788887765 35555 999999999877766654
No 225
>KOG0007|consensus
Probab=24.73 E-value=30 Score=35.41 Aligned_cols=47 Identities=19% Similarity=0.310 Sum_probs=40.5
Q ss_pred EeCCeEEEEEeC-CCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc
Q psy7711 17 KWGKETFEVDVD-TDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND 63 (577)
Q Consensus 17 k~~~~~~~~~v~-~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~ 63 (577)
...|....+.+. ..+.+..+|.++...+++++.-||+.+.|..|+|.
T Consensus 289 ~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~ 336 (341)
T KOG0007|consen 289 PADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDN 336 (341)
T ss_pred CCCCceeeeccccccccccccccccccccccchhheeeccCCcccCcc
Confidence 345566677766 77889999999999999999999999999999987
No 226
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=24.19 E-value=1.2e+02 Score=25.59 Aligned_cols=30 Identities=30% Similarity=0.299 Sum_probs=21.5
Q ss_pred eCC-CCCHHHHHHHHHHH----hCCCC------CCceEEec
Q psy7711 27 VDT-DEEPMLFKAQLYEL----TGVQI------DRQKVMCK 56 (577)
Q Consensus 27 v~~-~~tv~~lk~~i~~~----~~v~~------~~qkl~~~ 56 (577)
|+. +.||.+|++.+.+. .|+|| +..||..+
T Consensus 22 vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~ 62 (122)
T PF10209_consen 22 VDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTK 62 (122)
T ss_pred CCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEec
Confidence 665 88999999887765 45554 66777754
No 227
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=23.94 E-value=1.4e+02 Score=28.77 Aligned_cols=54 Identities=24% Similarity=0.167 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHhCCCCCCceE-EecCCccCCcccccccc-CCCceEEEeccccC
Q psy7711 31 EEPMLFKAQLYELTGVQIDRQKV-MCKGATLKNDEWDNFKL-SNGSMVLLMGSKEE 84 (577)
Q Consensus 31 ~tv~~lk~~i~~~~~v~~~~qkl-~~~g~~l~d~~l~~~~~-~~~~~i~l~gs~~~ 84 (577)
.|+++.|+.++.+++-+++--.- +|+.+.+.++....+.+ .++-.+++||+.+.
T Consensus 54 ~~lg~~~e~~~k~~~a~~~~~~~~~fk~~~~~~di~~e~~~e~~~~~LLvmGkie~ 109 (255)
T COG3640 54 KYLGGKRELLKKRTGAEPGGPPGEMFKENPLVSDLPDEYLVENGDIDLLVMGKIEE 109 (255)
T ss_pred cccccHHHHHHHHhccCCCCCcccccccCcchhhhhHHHhhhcCCccEEEeccccC
Confidence 58899999999998876665444 67777776663334433 34478889998765
No 228
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=23.66 E-value=91 Score=24.20 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=18.7
Q ss_pred EEEEeCCCCCHHHHHHHHHHHh
Q psy7711 23 FEVDVDTDEEPMLFKAQLYELT 44 (577)
Q Consensus 23 ~~~~v~~~~tv~~lk~~i~~~~ 44 (577)
+.++++.++|+.++|+.|.+..
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~A 23 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEEA 23 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHHG
T ss_pred eEEEccCcCcHHHHHHHHHHHH
Confidence 4788999999999999999875
No 229
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=23.30 E-value=2.5e+02 Score=22.98 Aligned_cols=70 Identities=21% Similarity=0.308 Sum_probs=40.5
Q ss_pred ceEEEEEEeC--CeEEEEEeCCCCCHHHHHHHHHHH--hCCCC-CCc-eEE--ecCCc--cCCc-ccccc-----ccCCC
Q psy7711 10 HTYIVKVKWG--KETFEVDVDTDEEPMLFKAQLYEL--TGVQI-DRQ-KVM--CKGAT--LKND-EWDNF-----KLSNG 73 (577)
Q Consensus 10 ~~~~i~vk~~--~~~~~~~v~~~~tv~~lk~~i~~~--~~v~~-~~q-kl~--~~g~~--l~d~-~l~~~-----~~~~~ 73 (577)
..+.|.|.+. +..+++.++.+.|+.+|-+++... .+..+ +.. ..+ ..|+. |-.+ .|.++ .++.|
T Consensus 15 ~~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~~ 94 (106)
T PF00794_consen 15 NKIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKRG 94 (106)
T ss_dssp SEEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHCT
T ss_pred CeEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhcC
Confidence 3588888886 477899999999999998888776 22222 222 222 45642 4445 66666 34555
Q ss_pred ceEEEe
Q psy7711 74 SMVLLM 79 (577)
Q Consensus 74 ~~i~l~ 79 (577)
..+.|+
T Consensus 95 ~~~~L~ 100 (106)
T PF00794_consen 95 KDPHLV 100 (106)
T ss_dssp --EEEE
T ss_pred CCcEEE
Confidence 444443
No 230
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=23.01 E-value=40 Score=32.57 Aligned_cols=20 Identities=30% Similarity=0.677 Sum_probs=18.2
Q ss_pred ccccCCC-CcchhhHHHhhcC
Q psy7711 114 GLNNLGN-TCYMNAVIQCLKT 133 (577)
Q Consensus 114 gl~n~g~-~cy~ns~~q~l~~ 133 (577)
|..|.+| +||+-|+|.++++
T Consensus 1 g~~~~~~~~cy~d~~~~~~f~ 21 (241)
T cd02670 1 GAQNHCNVSCYLDALLFAMFA 21 (241)
T ss_pred CCccccCceeehHHHHHHHHH
Confidence 6789999 9999999999987
No 231
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=22.73 E-value=93 Score=26.41 Aligned_cols=42 Identities=12% Similarity=0.167 Sum_probs=32.0
Q ss_pred EeCCCCCHHHHHHHHHHHhCCCCCCceEE-ecCCccCCc-ccccc
Q psy7711 26 DVDTDEEPMLFKAQLYELTGVQIDRQKVM-CKGATLKND-EWDNF 68 (577)
Q Consensus 26 ~v~~~~tv~~lk~~i~~~~~v~~~~qkl~-~~g~~l~d~-~l~~~ 68 (577)
=|+.+.||++|...|....++++++ -.+ +++.++..+ +++++
T Consensus 46 lVP~d~tV~qF~~iIRkrl~l~~~k-~flfVnn~lp~~s~~mg~l 89 (121)
T PTZ00380 46 ALPRDATVAELEAAVRQALGTSAKK-VTLAIEGSTPAVTATVGDI 89 (121)
T ss_pred EcCCCCcHHHHHHHHHHHcCCChhH-EEEEECCccCCccchHHHH
Confidence 5888999999999999999999997 334 455455544 55554
No 232
>KOG4598|consensus
Probab=22.55 E-value=1.3e+02 Score=33.33 Aligned_cols=75 Identities=17% Similarity=0.278 Sum_probs=50.8
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEe----cCCcc--CCc-cccccccCCCceEEEe-ccccCCCCCCccccc
Q psy7711 23 FEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMC----KGATL--KND-EWDNFKLSNGSMVLLM-GSKEEDSMKEPVVKP 94 (577)
Q Consensus 23 ~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~----~g~~l--~d~-~l~~~~~~~~~~i~l~-gs~~~~~~~~~~~~~ 94 (577)
+.+.|+...+++.||+.|++..+||.+.-||.- +|..+ .+. +|+ ++-+|.+|++= |.+-+ +..-..+.
T Consensus 879 ~kl~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~R~~~~N~~~~S~~~NetLs--~~~~~~~iTI~LG~~Lk--~dE~~~KI 954 (1203)
T KOG4598|consen 879 HKLDVDSRMRVLAFKKHVEEQLEVDKDHFKIVRHASDNGSEASFMDNETLS--GAFQSCFITIKLGAPLK--SDEKMMKI 954 (1203)
T ss_pred eeeeccceeeHHHHHHHHHHHhCcChhHeEEEEEecCCcchhhhccchhhh--hhcccceEEEEecCcCC--CCceeeEE
Confidence 679999999999999999999999999999873 23222 222 554 45667777764 44322 22233455
Q ss_pred cccccch
Q psy7711 95 KFVEDMN 101 (577)
Q Consensus 95 ~~~ed~~ 101 (577)
.|+.++.
T Consensus 955 ~~L~~l~ 961 (1203)
T KOG4598|consen 955 ILLDILE 961 (1203)
T ss_pred Eeehhhh
Confidence 6666554
No 233
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=21.57 E-value=3.2e+02 Score=21.93 Aligned_cols=53 Identities=17% Similarity=0.276 Sum_probs=32.8
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCC-------ccCCc-c---c--cccccCCCceEEEe
Q psy7711 25 VDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGA-------TLKND-E---W--DNFKLSNGSMVLLM 79 (577)
Q Consensus 25 ~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~-------~l~d~-~---l--~~~~~~~~~~i~l~ 79 (577)
++++...||.+|=..|.+.. |+.+.+|...+. +|-++ . + .+..|++|+.|.++
T Consensus 23 ~~~~~~~tV~dll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~ 88 (94)
T cd01764 23 LDGEKPVTVGDLLDYVASNL--LEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFI 88 (94)
T ss_pred ccCCCCCcHHHHHHHHHHhC--chhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEE
Confidence 34435679999988888776 556666654321 12222 2 2 24568888888877
No 234
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=20.58 E-value=2.5e+02 Score=25.76 Aligned_cols=37 Identities=19% Similarity=0.286 Sum_probs=30.6
Q ss_pred eEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCC
Q psy7711 11 TYIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQ 47 (577)
Q Consensus 11 ~~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~ 47 (577)
.+.|.|.. .|+...|.+++..|+.++-..|....|++
T Consensus 3 ~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~ 40 (207)
T smart00295 3 PRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIR 40 (207)
T ss_pred cEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 35667765 45667899999999999999999999994
No 235
>cd02420 Peptidase_C39D A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.
Probab=20.35 E-value=1.8e+02 Score=24.17 Aligned_cols=36 Identities=14% Similarity=-0.038 Sum_probs=25.2
Q ss_pred CCceEEEEECCCCcEEEEeCC-cceecChhhhhccCC
Q psy7711 537 SGHYVAWVKKPNGTWIKCDDD-KVYPISEEEVLKLSG 572 (577)
Q Consensus 537 ~GHY~a~vr~~~~~W~~~nD~-~V~~v~~~~V~~~~~ 572 (577)
.|||+...+..++.|+.+|-. ....++.++..+...
T Consensus 83 ~g~~~Vl~~~~~~~~~i~dp~~~~~~~s~~el~~~~~ 119 (125)
T cd02420 83 FNHFLVVEGFDKRKVFLNDPATGRRTVSLEEFDQSFT 119 (125)
T ss_pred CCEEEEEEEEeCCEEEEECCCcCceeecHHHHHhhCC
Confidence 489999999767777777743 334578888665544
No 236
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=20.01 E-value=2.7e+02 Score=21.34 Aligned_cols=38 Identities=11% Similarity=0.058 Sum_probs=32.6
Q ss_pred EEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q psy7711 12 YIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQID 49 (577)
Q Consensus 12 ~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~ 49 (577)
++|+.-+.|++.-|.+....-..|+..++.+.+|-+.+
T Consensus 1 vRiKfE~~gEKRIi~f~RPvkf~dl~~kv~~afGq~md 38 (79)
T cd06405 1 VRIKFEHNGEKRIIQFPRPVKFKDLQQKVTTAFGQPMD 38 (79)
T ss_pred CeEEEEecCceEEEecCCCccHHHHHHHHHHHhCCeee
Confidence 35777789999999999989999999999999986544
Done!