Query psy7711
Match_columns 577
No_of_seqs 375 out of 2685
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 16:52:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7711.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7711hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayn_A Ubiquitin carboxyl-term 100.0 4.9E-64 1.7E-68 527.3 27.1 358 187-576 11-382 (404)
2 1vjv_A Ubiquitin carboxyl-term 100.0 4.7E-63 1.6E-67 520.9 27.0 371 183-576 17-402 (415)
3 2y6e_A Ubiquitin carboxyl-term 100.0 1.6E-56 5.3E-61 463.7 26.9 293 186-569 4-347 (367)
4 1nb8_A Ubiquitin carboxyl-term 100.0 2.8E-55 9.6E-60 450.9 26.1 286 187-575 3-294 (353)
5 2gfo_A Ubiquitin carboxyl-term 100.0 2.9E-55 9.9E-60 457.4 23.8 292 187-569 59-384 (396)
6 3nhe_A Ubiquitin carboxyl-term 100.0 5.9E-55 2E-59 449.1 24.9 293 186-569 5-331 (348)
7 3i3t_A Ubiquitin carboxyl-term 100.0 1.1E-54 3.8E-59 448.3 21.1 290 189-570 2-340 (355)
8 2f1z_A Ubiquitin carboxyl-term 100.0 3.3E-52 1.1E-56 449.8 26.3 286 187-575 172-463 (522)
9 3mhs_A Ubiquitin carboxyl-term 100.0 3.5E-52 1.2E-56 445.8 22.4 304 186-569 137-462 (476)
10 3ihp_A Ubiquitin carboxyl-term 100.0 3.4E-51 1.1E-55 459.4 24.2 232 188-438 342-627 (854)
11 2vhf_A Ubiquitin carboxyl-term 100.0 4.1E-43 1.4E-47 345.3 1.8 293 189-556 8-308 (374)
12 1wgg_A Ubiquitin carboxyl-term 99.8 2.9E-20 1E-24 151.3 10.6 86 8-94 4-90 (96)
13 3shq_A UBLCP1; phosphatase, hy 99.8 3.5E-20 1.2E-24 183.9 9.4 94 10-103 4-104 (320)
14 1v5t_A 8430435I17RIK protein; 99.8 1.6E-19 5.3E-24 145.5 8.4 77 8-84 4-85 (90)
15 1v86_A DNA segment, CHR 7, way 99.7 5.5E-18 1.9E-22 137.7 9.3 74 10-84 16-90 (95)
16 3plu_A Ubiquitin-like modifier 99.7 2.3E-17 8E-22 129.6 8.4 76 4-79 14-91 (93)
17 1wxv_A BAG-family molecular ch 99.7 4.5E-17 1.6E-21 132.0 9.6 77 8-84 4-87 (92)
18 2lxa_A Ubiquitin-like protein 99.7 8.9E-18 3E-22 133.1 5.0 74 11-84 1-80 (87)
19 2kd0_A LRR repeats and ubiquit 99.7 9.8E-17 3.3E-21 127.5 10.0 74 10-83 11-85 (85)
20 4a20_A Ubiquitin-like protein 99.7 5.3E-17 1.8E-21 131.5 7.4 74 9-82 17-96 (98)
21 3m62_B UV excision repair prot 99.7 4.3E-17 1.5E-21 135.3 7.0 74 11-84 1-76 (106)
22 2dzm_A FAS-associated factor 1 99.7 1.1E-16 3.9E-21 129.6 8.1 76 7-82 5-82 (100)
23 2kk8_A Uncharacterized protein 99.7 1.3E-16 4.4E-21 126.3 7.5 72 11-82 10-84 (84)
24 1uh6_A Ubiquitin-like 5; beta- 99.7 1.9E-16 6.5E-21 127.4 8.0 71 9-79 26-98 (100)
25 2bwf_A Ubiquitin-like protein 99.7 3.8E-16 1.3E-20 122.2 9.6 71 12-82 5-76 (77)
26 3m63_B Ubiquitin domain-contai 99.7 5.3E-17 1.8E-21 133.3 4.7 78 3-82 22-100 (101)
27 3phx_B Ubiquitin-like protein 99.6 3.4E-16 1.2E-20 123.1 8.8 72 9-80 2-75 (79)
28 1wju_A NEDD8 ultimate buster-1 99.6 2E-16 6.7E-21 127.3 6.9 81 4-84 10-94 (100)
29 1uel_A HHR23B, UV excision rep 99.6 7.6E-16 2.6E-20 125.4 10.1 73 12-84 1-78 (95)
30 2hj8_A Interferon-induced 17 k 99.6 6.5E-16 2.2E-20 123.9 8.4 76 8-83 1-78 (88)
31 3v6c_B Ubiquitin; structural g 99.6 9.9E-16 3.4E-20 123.8 9.2 72 9-80 15-88 (91)
32 2wyq_A HHR23A, UV excision rep 99.6 1.3E-15 4.4E-20 121.6 9.2 75 10-84 4-83 (85)
33 4eew_A Large proline-rich prot 99.6 1.2E-15 4.1E-20 122.6 8.9 71 8-79 14-86 (88)
34 4dwf_A HLA-B-associated transc 99.6 1.8E-15 6.1E-20 122.1 9.5 75 9-84 3-79 (90)
35 2klc_A Ubiquilin-1; ubiquitin- 99.6 1.6E-15 5.6E-20 124.6 9.4 76 8-83 22-98 (101)
36 1ttn_A DC-UBP, dendritic cell- 99.6 1.6E-15 5.4E-20 126.1 9.2 76 9-84 21-98 (106)
37 1v5o_A 1700011N24RIK protein; 99.6 2E-15 6.7E-20 124.5 9.5 77 8-84 4-87 (102)
38 4fbj_B NEDD8; effector-HOST ta 99.6 1.2E-15 3.9E-20 122.4 7.9 70 12-81 1-72 (88)
39 1wx8_A Riken cDNA 4931431F19; 99.6 2.5E-15 8.5E-20 122.8 9.2 77 8-84 14-91 (96)
40 2dzi_A Ubiquitin-like protein 99.6 3.1E-15 1E-19 118.3 9.3 73 9-81 5-79 (81)
41 1yqb_A Ubiquilin 3; structural 99.6 2.3E-15 8E-20 123.3 8.6 76 9-84 20-96 (100)
42 1wh3_A 59 kDa 2'-5'-oligoadeny 99.6 3.6E-15 1.2E-19 119.6 9.3 76 7-82 3-80 (87)
43 1wgd_A Homocysteine-responsive 99.6 1.8E-15 6.2E-20 122.7 7.5 75 8-82 4-86 (93)
44 2l7r_A Ubiquitin-like protein 99.6 1.5E-15 5.1E-20 123.0 6.8 72 9-81 17-89 (93)
45 2kan_A Uncharacterized protein 99.6 3.2E-15 1.1E-19 121.0 8.3 73 10-82 14-88 (94)
46 1j8c_A Ubiquitin-like protein 99.6 5.1E-15 1.8E-19 126.2 9.6 76 9-84 30-106 (125)
47 3dbh_I NEDD8; cell cycle, acti 99.6 5E-15 1.7E-19 119.0 9.0 72 9-80 10-83 (88)
48 1wx7_A Ubiquilin 3; ubiquitin- 99.6 8.2E-15 2.8E-19 121.8 10.3 76 9-84 15-91 (106)
49 1yx5_B Ubiquitin; proteasome, 99.6 5.2E-15 1.8E-19 121.3 8.9 88 12-106 1-90 (98)
50 4hcn_B Polyubiquitin, ubiquiti 99.6 4.4E-15 1.5E-19 121.6 7.8 72 10-81 21-94 (98)
51 2daf_A FLJ35834 protein; hypot 99.6 5.1E-15 1.8E-19 120.7 8.0 74 11-84 15-91 (118)
52 1ndd_A NEDD8, protein (ubiquit 99.6 7E-15 2.4E-19 114.6 8.2 70 12-81 1-72 (76)
53 1sif_A Ubiquitin; hydrophobic 99.5 8.1E-15 2.8E-19 117.4 7.8 71 11-81 9-81 (88)
54 2faz_A Ubiquitin-like containi 99.5 1E-14 3.5E-19 114.2 8.2 71 11-81 2-76 (78)
55 3mtn_B UBA80, ubcep1, ubiquiti 99.5 1.3E-14 4.6E-19 115.7 8.8 71 10-80 2-74 (85)
56 3n3k_B Ubiquitin; hydrolase, p 99.5 7.6E-15 2.6E-19 117.1 7.2 71 10-80 2-74 (85)
57 3a9j_A Ubiquitin; protein comp 99.5 1.5E-14 5E-19 112.8 8.4 70 12-81 1-72 (76)
58 1wy8_A NP95-like ring finger p 99.5 2.4E-14 8.2E-19 115.2 9.3 74 9-82 5-82 (89)
59 3k9o_B Ubiquitin, UBB+1; E2-25 99.5 2E-14 6.8E-19 117.5 8.5 70 12-81 2-73 (96)
60 3vdz_A Ubiquitin-40S ribosomal 99.5 1.7E-14 5.9E-19 120.6 8.2 72 10-81 34-107 (111)
61 1x1m_A Ubiquitin-like protein 99.5 1.6E-14 5.4E-19 120.1 7.5 76 9-84 10-102 (107)
62 2kdb_A Homocysteine-responsive 99.5 1.6E-14 5.4E-19 117.3 6.5 71 9-79 21-99 (99)
63 2uyz_B Small ubiquitin-related 99.5 2.6E-14 8.8E-19 112.2 7.5 73 9-81 1-75 (79)
64 2fnj_B Transcription elongatio 99.5 2.5E-14 8.6E-19 118.4 7.6 72 11-82 2-81 (118)
65 1v2y_A 3300001G02RIK protein; 99.5 1.1E-14 3.9E-19 118.8 4.9 75 8-82 4-96 (105)
66 3b1l_X E3 ubiquitin-protein li 99.2 2.1E-15 7.3E-20 117.6 0.0 70 12-81 1-72 (76)
67 2ojr_A Ubiquitin; lanthide-bin 99.5 7.4E-14 2.5E-18 116.9 9.3 73 9-81 33-107 (111)
68 1we6_A Splicing factor, putati 99.5 6.2E-14 2.1E-18 117.5 8.5 73 9-81 25-103 (111)
69 1v6e_A Cytoskeleton-associated 99.5 1.3E-13 4.4E-18 111.9 10.0 75 8-82 4-88 (95)
70 4ajy_B Transcription elongatio 99.5 2.1E-13 7.1E-18 112.2 10.0 70 12-81 3-80 (118)
71 2kjr_A CG11242; UBL, ubiquitin 99.5 1.2E-13 4.2E-18 111.2 8.3 73 8-80 12-94 (95)
72 3u30_A Ubiquitin, linear DI-ub 99.5 1.2E-13 4.1E-18 125.7 8.9 75 8-82 17-93 (172)
73 4dbg_A Ranbp-type and C3HC4-ty 99.5 2E-13 6.8E-18 110.7 9.1 69 11-79 24-97 (105)
74 1t0y_A Tubulin folding cofacto 99.5 1.8E-13 6.2E-18 116.3 9.3 78 6-83 1-88 (122)
75 1wia_A Hypothetical ubiquitin- 99.4 2.7E-13 9.1E-18 110.4 9.6 73 9-84 5-80 (95)
76 1wgh_A Ubiquitin-like 3, HCG-1 99.4 3.1E-13 1.1E-17 112.4 10.1 75 9-83 14-100 (116)
77 2kdi_A Ubiquitin, vacuolar pro 99.4 1.4E-13 4.7E-18 115.6 8.0 73 11-83 9-83 (114)
78 1wyw_B Ubiquitin-like protein 99.4 1.3E-13 4.4E-18 112.4 7.6 73 9-81 19-93 (97)
79 4b6w_A Tubulin-specific chaper 99.4 2E-13 7E-18 107.9 8.1 72 11-82 2-84 (86)
80 3rt3_B Ubiquitin-like protein 99.4 2.8E-13 9.7E-18 121.7 8.7 71 12-82 3-77 (159)
81 2kj6_A Tubulin folding cofacto 99.4 4.8E-13 1.6E-17 108.0 8.9 73 10-82 13-96 (97)
82 3l0w_B Monoubiquitinated proli 99.4 3.6E-13 1.2E-17 121.3 8.9 70 12-81 1-72 (169)
83 3q3f_A Ribonuclease/ubiquitin 99.4 3.1E-13 1.1E-17 122.7 8.3 71 11-81 105-177 (189)
84 1we7_A SF3A1 protein; structur 99.4 4.1E-13 1.4E-17 113.1 8.2 72 10-81 24-107 (115)
85 2dzj_A Synaptic glycoprotein S 99.4 6E-13 2.1E-17 105.8 8.1 70 9-78 8-85 (88)
86 3rt3_B Ubiquitin-like protein 99.4 6.6E-13 2.3E-17 119.3 9.1 73 9-81 79-153 (159)
87 3u5e_m 60S ribosomal protein L 99.4 3E-14 1E-18 122.5 0.0 71 12-82 1-73 (128)
88 2gow_A HCG-1 protein, ubiquiti 99.4 5.1E-13 1.7E-17 112.8 7.5 73 10-82 16-100 (125)
89 2kzr_A Ubiquitin thioesterase 99.4 1.9E-12 6.5E-17 103.0 8.4 73 12-84 1-80 (86)
90 3u5c_f 40S ribosomal protein S 99.4 7.1E-14 2.4E-18 122.7 0.0 69 12-80 1-71 (152)
91 3b08_A Polyubiquitin-C, ubiqui 99.3 1.8E-12 6.1E-17 115.6 8.8 71 12-82 1-73 (152)
92 1se9_A Ubiquitin family; ubiqu 99.3 1.9E-12 6.6E-17 108.4 8.3 74 9-82 14-103 (126)
93 1wf9_A NPL4 family protein; be 99.3 4E-12 1.4E-16 105.4 9.0 76 9-84 5-97 (107)
94 1oqy_A HHR23A, UV excision rep 99.3 1.8E-12 6E-17 130.4 8.1 73 10-82 6-83 (368)
95 3ai5_A Yeast enhanced green fl 99.3 4.4E-12 1.5E-16 123.6 9.1 72 9-80 231-304 (307)
96 3b08_A Polyubiquitin-C, ubiqui 99.3 9.5E-12 3.3E-16 110.8 9.5 73 9-81 74-148 (152)
97 3u30_A Ubiquitin, linear DI-ub 99.3 1E-11 3.4E-16 112.9 8.8 71 10-80 95-167 (172)
98 2xzm_9 RPS31E; ribosome, trans 99.1 1.8E-11 6E-16 110.1 0.0 63 12-79 1-65 (189)
99 1wjn_A Tubulin-folding protein 99.0 2.4E-09 8.2E-14 87.0 9.5 75 8-82 6-93 (97)
100 3a4r_A Nfatc2-interacting prot 98.9 5.1E-09 1.7E-13 81.2 8.9 74 7-80 3-79 (79)
101 2io1_B Small ubiquitin-related 98.9 5E-09 1.7E-13 84.0 8.2 73 9-81 5-79 (94)
102 1wm3_A Ubiquitin-like protein 98.8 1.2E-08 4.2E-13 77.7 8.6 68 12-79 2-71 (72)
103 2ayn_A Ubiquitin carboxyl-term 98.8 1.8E-09 6E-14 112.4 4.9 73 99-171 1-75 (404)
104 2io0_B Small ubiquitin-related 98.8 1.9E-08 6.5E-13 80.0 8.6 72 10-81 4-77 (91)
105 1wz0_A Ubiquitin-like protein 98.7 4.4E-08 1.5E-12 79.8 9.6 73 9-81 22-96 (104)
106 2d07_B Ubiquitin-like protein 98.7 4.7E-08 1.6E-12 78.2 8.7 73 9-81 15-89 (93)
107 2vhf_A Ubiquitin carboxyl-term 98.7 1.3E-08 4.4E-13 100.6 5.0 63 108-171 5-68 (374)
108 2k8h_A Small ubiquitin protein 98.6 6.3E-08 2.2E-12 79.5 7.9 73 10-82 25-99 (110)
109 2eke_C Ubiquitin-like protein 98.6 8.2E-08 2.8E-12 78.2 8.5 72 10-81 30-102 (106)
110 2pjh_A Protein NPL4, nuclear p 98.6 5.6E-08 1.9E-12 75.3 5.3 70 10-79 3-78 (80)
111 1vjv_A Ubiquitin carboxyl-term 98.4 1.3E-07 4.5E-12 98.5 4.6 66 106-171 18-89 (415)
112 1nb8_A Ubiquitin carboxyl-term 98.3 6.1E-07 2.1E-11 91.2 7.6 59 110-171 4-62 (353)
113 3nhe_A Ubiquitin carboxyl-term 98.3 7.1E-07 2.4E-11 90.5 6.5 63 109-171 6-70 (348)
114 3i3t_A Ubiquitin carboxyl-term 98.2 8E-07 2.7E-11 90.4 4.5 61 112-172 3-64 (355)
115 2y6e_A Ubiquitin carboxyl-term 98.2 1.2E-06 4.2E-11 89.5 5.9 63 110-172 6-72 (367)
116 4efo_A Serine/threonine-protei 98.2 4.4E-06 1.5E-10 65.7 7.4 70 13-82 14-89 (94)
117 3kyd_D Small ubiquitin-related 98.1 9.3E-06 3.2E-10 66.7 8.7 71 10-80 39-111 (115)
118 2f1z_A Ubiquitin carboxyl-term 98.1 3.7E-06 1.3E-10 90.1 7.6 59 110-171 173-231 (522)
119 3pge_A SUMO-modified prolifera 98.1 1E-05 3.5E-10 73.5 8.6 71 9-79 27-98 (200)
120 3tix_A Ubiquitin-like protein 98.1 8.6E-06 2.9E-10 72.0 7.8 71 9-79 55-126 (207)
121 2gfo_A Ubiquitin carboxyl-term 98.0 1.8E-06 6.2E-11 89.2 3.2 34 110-143 60-93 (396)
122 3mhs_A Ubiquitin carboxyl-term 97.9 3.9E-06 1.3E-10 88.9 3.3 61 111-171 140-201 (476)
123 3ihp_A Ubiquitin carboxyl-term 97.9 3.8E-06 1.3E-10 94.5 2.9 63 111-173 343-407 (854)
124 2jxx_A Nfatc2-interacting prot 97.5 0.00047 1.6E-08 54.9 9.1 72 9-80 23-97 (97)
125 3v7o_A Minor nucleoprotein VP3 97.5 1.3E-05 4.5E-10 71.9 0.0 70 10-79 20-90 (227)
126 3mp2_A Non-structural protein 97.5 0.0005 1.7E-08 62.3 9.7 69 189-294 12-80 (211)
127 3goe_A DNA repair protein RAD6 97.4 0.00096 3.3E-08 49.5 8.6 69 11-79 9-80 (82)
128 2l76_A Nfatc2-interacting prot 97.3 0.0012 4.2E-08 51.5 8.4 72 11-82 21-93 (95)
129 3ix6_A TS, tsase, thymidylate 97.0 0.00011 3.8E-09 72.6 0.0 73 9-81 19-92 (360)
130 2bps_A YUKD protein; ubiquitin 96.9 0.0013 4.4E-08 50.2 5.5 67 12-78 5-80 (81)
131 3uf8_A Ubiquitin-like protein 96.9 0.0024 8.3E-08 59.0 8.4 74 9-82 19-93 (209)
132 2kc2_A Talin-1, F1; FERM, adhe 96.5 0.0028 9.7E-08 52.8 4.9 66 13-78 13-119 (128)
133 2fe8_A PP1AB, ORF1AB, replicas 96.4 0.056 1.9E-06 52.3 13.8 73 190-295 102-175 (315)
134 2al3_A TUG long isoform; TUG U 96.1 0.012 4E-07 45.5 6.1 74 11-84 9-84 (90)
135 3qx1_A FAS-associated factor 1 96.0 0.035 1.2E-06 42.9 8.5 69 9-78 5-80 (84)
136 4da1_A Protein phosphatase 1K, 95.8 0.0014 4.9E-08 67.0 0.0 71 11-81 30-101 (389)
137 2dzk_A UBX domain-containing p 94.5 0.24 8.4E-06 40.2 9.4 71 10-80 12-89 (109)
138 2daj_A KIAA0977 protein, COBL- 94.2 0.26 9.1E-06 37.1 8.0 74 7-83 5-84 (91)
139 1wj4_A KIAA0794 protein; UBX d 93.9 0.27 9.1E-06 41.0 8.8 70 9-79 41-117 (124)
140 2l32_A Small archaeal modifier 93.6 0.22 7.4E-06 37.3 6.9 59 12-79 1-60 (74)
141 1ryj_A Unknown; beta/alpha pro 93.3 0.59 2E-05 34.4 8.8 61 11-79 4-64 (70)
142 1oey_A P67-PHOX, neutrophil cy 92.2 0.37 1.3E-05 36.6 6.4 46 11-57 5-50 (83)
143 2cr5_A Reproduction 8; UBX dom 90.4 0.94 3.2E-05 36.6 7.7 68 11-79 23-96 (109)
144 1tyg_B YJBS; alpha beta barrel 90.1 0.5 1.7E-05 36.5 5.4 60 14-79 21-81 (87)
145 4a3p_A Ubiquitin carboxyl-term 88.7 1.4 4.9E-05 40.5 8.5 67 12-78 128-205 (217)
146 1ip9_A BEM1 protein; ubiquitin 88.5 1.1 3.9E-05 33.8 6.1 67 11-80 12-84 (85)
147 1s3s_G P47 protein; AAA ATPase 88.2 0.94 3.2E-05 37.8 6.2 68 9-76 50-123 (127)
148 2cu3_A Unknown function protei 87.0 1 3.6E-05 32.4 5.1 57 16-79 2-58 (64)
149 3jyu_A Ubiquitin carboxyl-term 85.7 3.6 0.00012 38.2 9.4 67 12-78 140-217 (231)
150 1vd2_A Protein kinase C, IOTA 85.3 3.7 0.00013 31.6 7.7 48 9-56 4-52 (89)
151 2kl0_A Putative thiamin biosyn 84.8 1.3 4.4E-05 32.9 4.7 57 16-79 3-59 (73)
152 1qmy_A Protease, leader protea 84.5 0.46 1.6E-05 39.4 2.3 23 189-211 12-34 (167)
153 2k5p_A THis protein, thiamine- 83.8 1 3.6E-05 33.9 3.9 61 15-79 2-63 (78)
154 1wgk_A Riken cDNA 2900073H19 p 83.4 1.2 4E-05 36.4 4.3 70 8-79 8-102 (114)
155 3ivf_A Talin-1; FERM domain, c 82.9 3.3 0.00011 41.5 8.5 70 10-79 2-82 (371)
156 2kvr_A Ubiquitin carboxyl-term 82.8 0.99 3.4E-05 37.8 3.8 32 24-55 59-90 (130)
157 4eut_A Serine/threonine-protei 80.7 3.8 0.00013 41.3 8.1 41 20-60 321-361 (396)
158 1f0z_A THis protein; ubiquitin 80.6 1.9 6.6E-05 31.1 4.2 58 16-79 3-60 (66)
159 3rpf_C Molybdopterin convertin 79.7 3.8 0.00013 30.3 5.7 64 12-79 1-68 (74)
160 1vjk_A Molybdopterin convertin 77.7 11 0.00038 29.4 8.3 65 11-79 9-92 (98)
161 1q1o_A Cell division control p 76.6 9.2 0.00032 29.9 7.1 38 10-47 4-49 (98)
162 2qjl_A URM1, ubiquitin-related 76.6 14 0.00049 28.9 8.6 33 12-44 2-45 (99)
163 2l52_A Methanosarcina acetivor 74.2 6.2 0.00021 31.0 5.9 68 11-79 3-93 (99)
164 2k9x_A Tburm1, uncharacterized 72.4 1 3.6E-05 36.4 0.9 70 9-80 2-97 (110)
165 2r2o_A Plexin-B1; effector dom 67.2 17 0.00059 30.2 7.1 70 11-80 24-127 (138)
166 2bkf_A Zinc-finger protein NBR 59.0 34 0.0012 26.0 6.7 42 6-47 1-44 (87)
167 3dwg_C 9.5 kDa culture filtrat 58.9 18 0.00063 27.7 5.7 55 24-79 20-87 (93)
168 2g1e_A Hypothetical protein TA 58.6 31 0.0011 26.0 7.0 56 24-79 18-84 (90)
169 3onh_A Ubiquitin-activating en 57.3 23 0.0008 29.0 6.0 60 24-84 9-82 (127)
170 3po0_A Small archaeal modifier 57.0 32 0.0011 26.0 6.8 55 21-79 18-83 (89)
171 3r8s_T 50S ribosomal protein L 52.9 25 0.00085 27.2 5.3 38 21-58 28-66 (93)
172 2juo_A GA-binding protein alph 51.6 31 0.0011 25.9 5.3 57 23-79 5-62 (89)
173 4e71_A Plexin-B2, MM1; transme 49.8 40 0.0014 26.9 6.2 69 11-79 11-108 (111)
174 2ylm_A Ubiquitin carboxyl-term 49.7 10 0.00034 39.9 3.5 31 24-54 39-69 (530)
175 1wgy_A RAP guanine nucleotide 49.6 43 0.0015 26.5 6.2 73 9-81 7-86 (104)
176 3qa8_A MGC80376 protein; kinas 49.2 15 0.00051 39.9 4.9 41 20-60 321-361 (676)
177 1n62_A Carbon monoxide dehydro 48.4 15 0.00052 31.9 3.9 30 10-39 2-31 (166)
178 1fm0_D Molybdopterin convertin 48.2 22 0.00076 26.3 4.5 53 22-79 18-75 (81)
179 2q5w_D Molybdopterin convertin 48.2 17 0.00057 26.7 3.7 53 22-79 17-71 (77)
180 1ffv_A CUTS, iron-sulfur prote 45.6 18 0.00061 31.3 3.9 29 11-39 3-31 (163)
181 3hrd_D Nicotinate dehydrogenas 45.1 16 0.00056 31.5 3.5 29 10-38 2-30 (160)
182 1rws_A Hypothetical protein PF 44.8 10 0.00035 28.2 2.0 48 24-79 24-71 (77)
183 2c7h_A RBBP6, retinoblastoma-b 44.7 47 0.0016 25.2 5.5 43 11-53 6-51 (86)
184 3tve_T 50S ribosomal protein L 43.5 35 0.0012 26.3 4.9 38 21-58 22-60 (92)
185 2kmc_A Fermitin family homolog 43.3 1.1E+02 0.0039 23.6 7.8 65 11-80 19-98 (102)
186 2hj1_A Hypothetical protein; s 42.5 96 0.0033 24.0 7.3 66 11-80 12-84 (97)
187 1wj6_A KIAA0049 protein, RSGI 42.0 1.2E+02 0.0041 23.6 7.9 43 7-49 10-54 (101)
188 3o65_A Putative ataxin-3-like 40.5 20 0.00069 31.8 3.5 32 524-561 110-141 (191)
189 2eel_A Cell death activator CI 39.3 1.3E+02 0.0044 23.1 7.9 70 10-84 8-82 (91)
190 2zjr_Q 50S ribosomal protein L 36.3 40 0.0014 26.2 4.2 36 23-58 25-61 (95)
191 2cu1_A Mitogen-activated prote 36.0 79 0.0027 24.6 5.6 39 11-49 8-46 (103)
192 1vq8_S 50S ribosomal protein L 35.4 45 0.0015 25.3 4.2 34 21-54 23-56 (85)
193 4e74_A Plexin-A4; RBD, structu 35.3 1.3E+02 0.0043 24.3 7.1 69 11-79 13-112 (117)
194 2ns5_A Partitioning-defective 35.3 1.4E+02 0.0049 22.5 7.7 65 11-76 2-77 (85)
195 1t3q_A Quinoline 2-oxidoreduct 34.5 38 0.0013 29.4 4.3 31 9-39 7-37 (168)
196 3kuz_A Plexin-C1; structural g 34.3 1.9E+02 0.0065 23.6 8.6 69 11-79 19-124 (126)
197 2jrh_A Mitogen-activated prote 32.2 1.5E+02 0.0051 22.4 6.4 40 10-49 3-42 (94)
198 1h4r_A Merlin; FERM, neurofibr 32.1 55 0.0019 31.4 5.5 44 4-47 15-58 (314)
199 1f2r_I Inhibitor of caspase-ac 30.7 1.9E+02 0.0065 22.5 8.0 67 13-84 20-93 (100)
200 3h6n_A Plexin-D1; structural g 30.3 2.2E+02 0.0076 23.2 7.8 69 11-79 4-102 (127)
201 1v8c_A MOAD related protein; r 29.3 92 0.0032 26.9 5.9 55 24-79 17-81 (168)
202 3j21_T 50S ribosomal protein L 25.6 88 0.003 23.7 4.4 34 21-54 24-57 (86)
203 2ww6_A Fibritin, T4 fibritin; 24.7 29 0.00098 19.7 1.1 14 542-556 12-25 (27)
204 2nnz_A Hypothetical protein; b 24.4 38 0.0013 28.9 2.4 31 10-40 28-61 (153)
205 1ef1_A Moesin; membrane, FERM 23.5 1.2E+02 0.0042 28.5 6.2 37 12-48 2-38 (294)
206 1qmy_A Protease, leader protea 22.6 95 0.0033 25.8 4.2 40 524-568 109-150 (167)
207 1y8x_B Ubiquitin-activating en 22.4 21 0.00071 28.0 0.3 58 22-79 6-82 (98)
208 2npt_B Mitogen-activated prote 22.3 2.4E+02 0.0084 21.6 6.1 39 11-49 20-58 (100)
209 1rm6_C 4-hydroxybenzoyl-COA re 22.1 76 0.0026 27.2 3.9 29 12-40 3-31 (161)
210 2c60_A Human mitogen-activated 21.5 2.8E+02 0.0094 21.6 6.3 39 11-49 31-69 (111)
211 2lgx_A Fermitin family homolog 21.0 40 0.0014 26.6 1.7 65 12-81 27-102 (112)
No 1
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=100.00 E-value=4.9e-64 Score=527.25 Aligned_cols=358 Identities=54% Similarity=0.912 Sum_probs=287.4
Q ss_pred cccccccCCCCCchhHHHHHHHhhccHHHHHHHHhhcCC--CCCCCCChhhHHHHHHHHHHHHhcCCCCCCCChHHHHHH
Q psy7711 187 RYLPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGG--LQPGSNPAQSITASLRDLYECMDNMKISPSISPFIMLQV 264 (577)
Q Consensus 187 ~~~~~GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~~--~~~~~~~~~~l~~~L~~Lf~~l~~~~~~~~i~P~~~~~~ 264 (577)
...++||.|+||||||||+||+|+++|+||+++++.... .........+++++|+.||..|+.+ ...++|..|+.+
T Consensus 11 ~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~--~~~v~P~~~~~~ 88 (404)
T 2ayn_A 11 MELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKT--SSSIPPIILLQF 88 (404)
T ss_dssp CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHHH--CSEECCHHHHHH
T ss_pred cCCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCCCCcccHHHHHHHHHHHHHhcC--CCcCChHHHHHH
Confidence 457899999999999999999999999999999986644 1112234678999999999999987 478999999999
Q ss_pred HHhhCCccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC------------CCCccchhhhccceEEeEEEEcC
Q psy7711 265 LHNVFPRFADKTDDGSYMQQDANECWTEMVRMLKTALPGENEEGQ------------DSAKSSFIEQYFYTIMDTELKCS 332 (577)
Q Consensus 265 l~~~~~~f~~~~~~~~~~QqDA~Efl~~ll~~L~~~~~~~~~~~~------------~~~~~~~i~~lF~g~~~~~~~C~ 332 (577)
++...|.|.+....+++.||||+|||.+||+.|++++........ .....++|.++|+|.+.++++|.
T Consensus 89 l~~~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~e~~~~~~~~~~~~~~~s~i~~~F~G~l~s~i~C~ 168 (404)
T 2ayn_A 89 LHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSASAATPSKKKSLIDQFFGVEFETTMKCT 168 (404)
T ss_dssp HHHHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC------------------CCHHHHHTCEEEEEEEEES
T ss_pred HHHhCchhhccccCCCccccCHHHHHHHHHHHHHHHhccccCCcccccchhhhhhhhccccCchhhhhccEEEEEEEEec
Confidence 999999998654455789999999999999999999876431100 02345789999999999999999
Q ss_pred CCCCCCCCcccccceeeeeccCCCccchhHHHhhhhhhhhhccCcCCCCCceEEEEEEeccCCCceEEEEEEEEEecccc
Q psy7711 333 ESETEPPTKGTESFQQLSCYITTDVKYMLPGLKNKLQDQITKRSPSLDRDAVYVKTSKVSRLPAYLTIQFVRFFYKEKER 412 (577)
Q Consensus 333 ~c~~~~~s~~~e~f~~L~l~i~~~~~~l~~~l~~~~~e~i~~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~ 412 (577)
.|+..+.+.+.|+|+.|+|+|+....+|.++|+.++.+++.++|+.|++...+.|+..|.+||+||+|||+||.|+...+
T Consensus 169 ~C~~~s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~e~l~~~c~~c~~~~~~~k~~~i~~lP~vL~i~LkRF~~~~~~~ 248 (404)
T 2ayn_A 169 ESEEEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQEEITKQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKES 248 (404)
T ss_dssp SSCCCCCBCCEEEESSEEEECSSSCCBHHHHHHHTTEECCCCEETTTTEECCEEEEEEEEECCSSEEEEEECBCCCCSSS
T ss_pred CCCCccCceeeccCceEEeecCCCcccHHHHHHHhcccceeecchhhCCccceeeeeeHhhCCCceEEEEEEEEEecccC
Confidence 99997546789999999999998878999999999999999999999999999999999999999999999999998777
Q ss_pred ccccccccccCCccccccccCCHHHHhccccchHHHHHHHHHHHHHHHhhhhcccCCCchhhhhhhcccccCCccccccc
Q psy7711 413 INAKVLKDIKFPIEFDAYELCTPELQAKLAPMREKFKIAEEKEAFEEFRTQYVFISIPMDEIYVRFGQKIYAPVGDRIQD 492 (577)
Q Consensus 413 ~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 492 (577)
...|++.+|.||..|||.+|+..+++.++.|.|+.+++.++...+...+.... .+. . ..+
T Consensus 249 ~~~Ki~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~-----~~~------- 308 (404)
T 2ayn_A 249 VNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDK------KSS--P-----QKE------- 308 (404)
T ss_dssp SCCBCCCCCBCCSEEECGGGBCHHHHHHTTTTTGGGTCTTC---------------------------------------
T ss_pred ceeccCceeccCceeEHhHhcChhhhhhcchhhhHHhhhhcccchhhhhhccc------ccc--c-----ccc-------
Confidence 88999999999999999999999999988888876655544332221100000 000 0 000
Q ss_pred cccccchhcccCCCCCCCCCCCCCCCceeEEEeEEEEeecCCCCCCceEEEEECCCCcEEEEeCCcceecChhhhhccCC
Q psy7711 493 FGVKSTEFQSRGQGSSPGRVDIGSNNSGYYTLQAVLTHKGRTSSSGHYVAWVKKPNGTWIKCDDDKVYPISEEEVLKLSG 572 (577)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~~GHY~a~vr~~~~~W~~~nD~~V~~v~~~~V~~~~~ 572 (577)
.++. ......+.+.+....|+|+|||+|.|.++++|||+||+|+.+++||+|||+.|+++++++|++..|
T Consensus 309 -----~~~e-----~~~~~~~~~~~~~~~Y~L~avv~H~G~s~~~GHY~a~v~~~~~~W~~fnD~~V~~v~~~~v~~~~~ 378 (404)
T 2ayn_A 309 -----VKYE-----PFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSG 378 (404)
T ss_dssp --------C-----CCCCSCTTTTCCCSEEEEEEEEEEESSSTTSSEEEEEEEEETTEEEEEBTTBCCCBCHHHHGGGGS
T ss_pred -----cccc-----ccccccccCcCCCceEEEEEEEEecCCCCCCCCeEEEEECCCCeEEEeecccceecCHHHHHhhhC
Confidence 0000 000012234455679999999999998899999999999888999999999999999999999999
Q ss_pred CCCC
Q psy7711 573 GGKV 576 (577)
Q Consensus 573 Gg~~ 576 (577)
||+|
T Consensus 379 g~~~ 382 (404)
T 2ayn_A 379 GGDW 382 (404)
T ss_dssp SSSS
T ss_pred CCCC
Confidence 9987
No 2
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=100.00 E-value=4.7e-63 Score=520.94 Aligned_cols=371 Identities=29% Similarity=0.512 Sum_probs=279.4
Q ss_pred hhcccccccccCCCCCchhHHHHHHHhhccHHHHHHHHhhcCCCCCCCC------ChhhHHHHHHHHHHHHhcCCCCCCC
Q psy7711 183 MLQGRYLPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSN------PAQSITASLRDLYECMDNMKISPSI 256 (577)
Q Consensus 183 ~~~~~~~~~GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~~~~~~~~------~~~~l~~~L~~Lf~~l~~~~~~~~i 256 (577)
......+++||.|+||||||||+||+|+++|+||+++++.......... ...++.++|+.||..|+.+. ...+
T Consensus 17 ~~~~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~-~~~v 95 (415)
T 1vjv_A 17 VQQFAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKS-FKSV 95 (415)
T ss_dssp --CCCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC--CCEE
T ss_pred ccccCCCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCcccccccchhHHHHHHHHHHHHHhcCC-CCcc
Confidence 3445567899999999999999999999999999999876543221111 15689999999999999874 4789
Q ss_pred ChHHHHHHHHhhCCccccccCCC-CCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCCCccchhhhccceEEeEEEEcCCCC
Q psy7711 257 SPFIMLQVLHNVFPRFADKTDDG-SYMQQDANECWTEMVRMLKTALPGENEEGQDSAKSSFIEQYFYTIMDTELKCSESE 335 (577)
Q Consensus 257 ~P~~~~~~l~~~~~~f~~~~~~~-~~~QqDA~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~i~~lF~g~~~~~~~C~~c~ 335 (577)
+|..|+.+++...|.|.+....| ++.||||+|||.+||+.|++++.. ++|.++|+ .+.++++|..|+
T Consensus 96 ~p~~~~~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~-----------~~i~~~F~-~~~~~~~C~~C~ 163 (415)
T 1vjv_A 96 LPVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD-----------KFSEDFRI-QFKTTIKDTAND 163 (415)
T ss_dssp CCHHHHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH-----------HHHTTTCE-EEEEEEEETTEE
T ss_pred CHHHHHHHHHHhCchhhccccCCCCccccCHHHHHHHHHHHHHHHhcc-----------chHHHHHH-hheEEEEECCCC
Confidence 99999999999999998765554 789999999999999999998742 68999999 999999999999
Q ss_pred CCCCCcccccceeeeeccCCCccchhHHHhhhhhhhhhccCcCCCCCceEEEEEEeccCCCceEEEEEEEEEeccccccc
Q psy7711 336 TEPPTKGTESFQQLSCYITTDVKYMLPGLKNKLQDQITKRSPSLDRDAVYVKTSKVSRLPAYLTIQFVRFFYKEKERINA 415 (577)
Q Consensus 336 ~~~~s~~~e~f~~L~l~i~~~~~~l~~~l~~~~~e~i~~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~ 415 (577)
..+.+.+.|+|+.|+|+|+...++|.++|+.++.+++.++|+.|++...+.|+..|.+||+||+|||+||.|+...+...
T Consensus 164 ~~s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~e~i~~~c~~c~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~ 243 (415)
T 1vjv_A 164 NDITVKENESDSKLQCHISGTTNFMRNGLLEGLNEKIEKRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKS 243 (415)
T ss_dssp EEEEEECCCEESCEEECCCTTCCBHHHHHHHHHEEC---------CCCCEEEEEEEEECBSEEEEEECCEEEETTTTEEE
T ss_pred CCccccccccceeeeeccccccchHHHHHHHHhhhhhhhcccccCCcccEEEEEEcccCCCeeEEEEEEEEEeCCCCcch
Confidence 86434689999999999998878999999999999999999999999999999999999999999999999998777889
Q ss_pred cccccccCCccccccccCCHHHHhccccchHHHHHHHHHHHHHHHhhhhcccC----C--CchhhhhhhcccccCCcccc
Q psy7711 416 KVLKDIKFPIEFDAYELCTPELQAKLAPMREKFKIAEEKEAFEEFRTQYVFIS----I--PMDEIYVRFGQKIYAPVGDR 489 (577)
Q Consensus 416 Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~p~~~~ 489 (577)
|++.+|.||.+|||.+|+..+++.++.+.|+.+++.++...+..+........ . ..+..+.. ..+ ..
T Consensus 244 Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~e~-----~~~--~~ 316 (415)
T 1vjv_A 244 KILRKVVFPFQLDVADMLTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQYE-----TQV--AL 316 (415)
T ss_dssp ECCCCCBCCSEEECGGGBCHHHHHHHHHHHHHHHHHHHHHHHC----------------CCCHHHHHH-----HHH--HH
T ss_pred hhcCccCCCcEeEhHHhcChhhhhhhhhhHHHHHHHhhhhhhhhhhhhhccccccccccccccchhhh-----hch--hh
Confidence 99999999999999999999999999999998888776654432110000000 0 00000000 000 00
Q ss_pred ccccccccchhcccCCCCCCCCCCCCCCCceeEEEeEEEEeecCCCCCCceEEEEEC--CCCcEEEEeCCcceecChhhh
Q psy7711 490 IQDFGVKSTEFQSRGQGSSPGRVDIGSNNSGYYTLQAVLTHKGRTSSSGHYVAWVKK--PNGTWIKCDDDKVYPISEEEV 567 (577)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~~GHY~a~vr~--~~~~W~~~nD~~V~~v~~~~V 567 (577)
++. ...+..+......+...+.+.+....|+|+|||+|.|.++++|||+||+|+ .+++||+|||+.|+++++++|
T Consensus 317 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~s~~~GHY~a~vr~~~~~~~W~~fnD~~V~~v~~~~v 393 (415)
T 1vjv_A 317 NES---EKDQWLEEYKKHFPPNLEKGENPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKI 393 (415)
T ss_dssp HHH---HHHHHHHHHHTTSCTTCCTTBCSSSEEEEEEEEEEESSSTTSSEEEEEEECSSCTTCEEEEETTEEEEECHHHH
T ss_pred HHh---hhhhhhhhcccccccccccccCCCceEEEEEEEEecCCCCCCCCEEEEEeCCCCCCcEEEeECCcCeEcCHHHH
Confidence 000 000000000000000112233456789999999999988999999999998 589999999999999999999
Q ss_pred hccCCCCCC
Q psy7711 568 LKLSGGGKV 576 (577)
Q Consensus 568 ~~~~~Gg~~ 576 (577)
++..|||+|
T Consensus 394 ~~~~~g~~~ 402 (415)
T 1vjv_A 394 ESLAGGGES 402 (415)
T ss_dssp HGGGCCTTS
T ss_pred hhhcCCCCc
Confidence 999999987
No 3
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.6e-56 Score=463.75 Aligned_cols=293 Identities=23% Similarity=0.320 Sum_probs=246.9
Q ss_pred ccccccccCCCCCchhHHHHHHHhhccHHHHHHHHhhcCCC----CCCCCChhhHHHHHHHHHHHHhcCCCCCCCChHHH
Q psy7711 186 GRYLPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGL----QPGSNPAQSITASLRDLYECMDNMKISPSISPFIM 261 (577)
Q Consensus 186 ~~~~~~GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~~~----~~~~~~~~~l~~~L~~Lf~~l~~~~~~~~i~P~~~ 261 (577)
...+.+||.|+||||||||+||||+++|+|++++++..... .........+..+|+.||..|+.++ ...++|..|
T Consensus 4 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~-~~~i~P~~~ 82 (367)
T 2y6e_A 4 IQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGR-DAHVAPRMF 82 (367)
T ss_dssp CCTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSS-CSEECCHHH
T ss_pred CCCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCC-CCCcCHHHH
Confidence 34568999999999999999999999999999998643211 1112234579999999999999875 568999999
Q ss_pred HHHHHhhCCccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCC----------------------CCccchhhh
Q psy7711 262 LQVLHNVFPRFADKTDDGSYMQQDANECWTEMVRMLKTALPGENEEGQD----------------------SAKSSFIEQ 319 (577)
Q Consensus 262 ~~~l~~~~~~f~~~~~~~~~~QqDA~Efl~~ll~~L~~~~~~~~~~~~~----------------------~~~~~~i~~ 319 (577)
+.+++...+.|. ++.||||+|||.+||+.|++++......... ....++|.+
T Consensus 83 ~~~l~~~~~~f~------~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~ 156 (367)
T 2y6e_A 83 KTQVGRFAPQFS------GYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVD 156 (367)
T ss_dssp HHHHHHHCGGGC------SSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHHhhhhcC------CCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHHHHhcCCcccc
Confidence 999999999998 8999999999999999999998754321100 013568999
Q ss_pred ccceEEeEEEEcCCCCCCCCCcccccceeeeeccCCC------------------ccchhHHHhhhhhhhhh-----ccC
Q psy7711 320 YFYTIMDTELKCSESETEPPTKGTESFQQLSCYITTD------------------VKYMLPGLKNKLQDQIT-----KRS 376 (577)
Q Consensus 320 lF~g~~~~~~~C~~c~~~~~s~~~e~f~~L~l~i~~~------------------~~~l~~~l~~~~~e~i~-----~~c 376 (577)
+|+|++.++++|..|++. +.+.|+|+.|+|+|+.. ..+|++||+.|+..+.. ++|
T Consensus 157 ~F~G~l~s~~~C~~C~~~--s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C 234 (367)
T 2y6e_A 157 TFHGLFKSTLVCPECAKV--SVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYC 234 (367)
T ss_dssp HHCEEEEEEEECTTTCCE--EEEEEEESSEEEECCC-------------------CEEHHHHHHHHTSCEECCC-CCEEE
T ss_pred ccCcEEeeeEEeCCCCCE--eeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHHHHHHhcccccCCCCCCccC
Confidence 999999999999999985 68899999999999753 35799999999885543 589
Q ss_pred cCCCCCceEEEEEEeccCCCceEEEEEEEEEeccccccccccccccCCc-cccccccCCHHHHhccccchHHHHHHHHHH
Q psy7711 377 PSLDRDAVYVKTSKVSRLPAYLTIQFVRFFYKEKERINAKVLKDIKFPI-EFDAYELCTPELQAKLAPMREKFKIAEEKE 455 (577)
Q Consensus 377 ~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~V~fp~-~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~ 455 (577)
+.|+....+.|+..|.+||+||+|||+||.|+. +...|+...|.||. .|||++|+...
T Consensus 235 ~~C~~~~~a~K~~~i~~lP~vL~i~LkRF~~~~--~~~~K~~~~v~fp~~~Ldl~~~~~~~------------------- 293 (367)
T 2y6e_A 235 PNCKKHQQATKKFDLWSLPKILVVHLKRFSYNR--YWRDKLDTVVEFPIRGLNMSEFVCNL------------------- 293 (367)
T ss_dssp TTTTEEECCEEEEEEEECCSEEEEEEECEEECS--SCEEECCCCEECCSSCEECGGGBSCS-------------------
T ss_pred CCCCCCceEEEEEEEecCCcEEEEEEeCeeecC--ccceecCceEEecCCcCChhhhccCC-------------------
Confidence 999999999999999999999999999999986 45789999999997 69998886421
Q ss_pred HHHHHhhhhcccCCCchhhhhhhcccccCCccccccccccccchhcccCCCCCCCCCCCCCCCceeEEEeEEEEeecCCC
Q psy7711 456 AFEEFRTQYVFISIPMDEIYVRFGQKIYAPVGDRIQDFGVKSTEFQSRGQGSSPGRVDIGSNNSGYYTLQAVLTHKGRTS 535 (577)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVI~H~G~s~ 535 (577)
......|+|+|||+|.|. +
T Consensus 294 ------------------------------------------------------------~~~~~~Y~L~avv~H~G~-~ 312 (367)
T 2y6e_A 294 ------------------------------------------------------------SARPYVYDLIAVSNHYGA-M 312 (367)
T ss_dssp ------------------------------------------------------------SSCCCEEEEEEEEEEECS-S
T ss_pred ------------------------------------------------------------CCCCceEEEEEEeecCCC-C
Confidence 001347999999999996 8
Q ss_pred CCCceEEEEECC-CCcEEEEeCCcceecChhhhhc
Q psy7711 536 SSGHYVAWVKKP-NGTWIKCDDDKVYPISEEEVLK 569 (577)
Q Consensus 536 ~~GHY~a~vr~~-~~~W~~~nD~~V~~v~~~~V~~ 569 (577)
++|||+||+|+. +++||+|||+.|+++++++|+.
T Consensus 313 ~~GHY~a~~~~~~~~~W~~fnD~~V~~v~~~~v~~ 347 (367)
T 2y6e_A 313 GVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVT 347 (367)
T ss_dssp SSCEEEEEEECTTTCCEEEEETTEEEECCGGGTSS
T ss_pred CCCeeeEEEEcCCCCeEEEECCCCceECCHHHcCC
Confidence 999999999986 7899999999999999999975
No 4
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=100.00 E-value=2.8e-55 Score=450.94 Aligned_cols=286 Identities=23% Similarity=0.387 Sum_probs=236.1
Q ss_pred cccccccCCCCCchhHHHHHHHhhccHHHHHHHHhhcCCCCCCCCChhhHHHHHHHHHHHHhcCCCCCCCChHHHHHHHH
Q psy7711 187 RYLPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDNMKISPSISPFIMLQVLH 266 (577)
Q Consensus 187 ~~~~~GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~l~~~L~~Lf~~l~~~~~~~~i~P~~~~~~l~ 266 (577)
..+++||.|+||||||||+||+|+++|+||++++...... .....++.++|+.||..|+.+ ..++.|..|+..+.
T Consensus 3 ~~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~~---~~~~~~~~~~l~~lf~~l~~~--~~~~~~~~l~~~~~ 77 (353)
T 1nb8_A 3 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG---DDSSKSVPLALQRVFYELQHS--DKPVGTKKLTKSFG 77 (353)
T ss_dssp CSSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCTT---SCTTTCHHHHHHHHHHHHHHC--SSCBCCHHHHHHHT
T ss_pred CCCCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCCC---CcccccHHHHHHHHHHHHhhc--CCCCCCHHHHhhcC
Confidence 4578999999999999999999999999999998654321 233457899999999999987 45789998887774
Q ss_pred hhCCccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCCCccchhhhccceEEeEEEEcCCCCCCCCCcccccc
Q psy7711 267 NVFPRFADKTDDGSYMQQDANECWTEMVRMLKTALPGENEEGQDSAKSSFIEQYFYTIMDTELKCSESETEPPTKGTESF 346 (577)
Q Consensus 267 ~~~~~f~~~~~~~~~~QqDA~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~i~~lF~g~~~~~~~C~~c~~~~~s~~~e~f 346 (577)
.+.|. ++.||||+|||.+||+.|++++... ...++|.++|+|.+.+.++|..|+.. +.+.|+|
T Consensus 78 --~~~~~------~~~QqDA~EFl~~LLd~L~~~~~~~-------~~~s~i~~~F~g~~~~~i~C~~C~~~--s~~~e~f 140 (353)
T 1nb8_A 78 --WETLD------SFMQHDVQELCRVLLDNVENKMKGT-------CVEGTIPKLFRGKMVSYIQCKEVDYR--SDRREDY 140 (353)
T ss_dssp --CCBTT------TTTTSCHHHHHHHHHHHHHHHTTTS-------TTTTHHHHHHCEEEEEEEEESSSCCE--EEEEEEE
T ss_pred --CCCCC------cccchhHHHHHHHHHHHHHHHhcCC-------CccchhhhhceeEEEEEEEeccCCCe--eceeeee
Confidence 35666 8899999999999999999988653 23568999999999999999999985 6789999
Q ss_pred eeeeeccCCCccchhHHHhhhhhhhhh-----ccCcCCCCCceEEEEEEeccCCCceEEEEEEEEEeccccccccccccc
Q psy7711 347 QQLSCYITTDVKYMLPGLKNKLQDQIT-----KRSPSLDRDAVYVKTSKVSRLPAYLTIQFVRFFYKEKERINAKVLKDI 421 (577)
Q Consensus 347 ~~L~l~i~~~~~~l~~~l~~~~~e~i~-----~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~V 421 (577)
+.|+|+|+. ..++.++|..|+..+.. +.|+.|+ ...+.|+..|.+||+||+|||+||.|+...+...|+...|
T Consensus 141 ~~LsL~i~~-~~~l~~~L~~~~~~E~l~~~~~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v 218 (353)
T 1nb8_A 141 YDIQLSIKG-KKNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRF 218 (353)
T ss_dssp SCEEECCTT-CSBHHHHHHHHTCCEEECTTTCEECGGGC-EECEEEEEEESCCCSEEEEEECCCC--------CCCCCCC
T ss_pred EEEEEEECC-CcchHHHHHHhhCccccCCCccccCCcCc-cEeeEEEEEhhcCCCceEEEEecEEEecccCceEecCcEE
Confidence 999999974 46799999999875433 4688875 4568999999999999999999999998767789999999
Q ss_pred cCCccccccccCCHHHHhccccchHHHHHHHHHHHHHHHhhhhcccCCCchhhhhhhcccccCCccccccccccccchhc
Q psy7711 422 KFPIEFDAYELCTPELQAKLAPMREKFKIAEEKEAFEEFRTQYVFISIPMDEIYVRFGQKIYAPVGDRIQDFGVKSTEFQ 501 (577)
Q Consensus 422 ~fp~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 501 (577)
.||..|||.+|+...-
T Consensus 219 ~fp~~Ldl~~~~~~~~---------------------------------------------------------------- 234 (353)
T 1nb8_A 219 EFPEQLPLDEFLQKTD---------------------------------------------------------------- 234 (353)
T ss_dssp BCCSEEECGGGBSSCC----------------------------------------------------------------
T ss_pred ECCCeeehhhhhcccC----------------------------------------------------------------
Confidence 9999999988864210
Q ss_pred ccCCCCCCCCCCCCCCCceeEEEeEEEEeecCCCCCCceEEEEEC-CCCcEEEEeCCcceecChhhhhccCCCCC
Q psy7711 502 SRGQGSSPGRVDIGSNNSGYYTLQAVLTHKGRTSSSGHYVAWVKK-PNGTWIKCDDDKVYPISEEEVLKLSGGGK 575 (577)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~~GHY~a~vr~-~~~~W~~~nD~~V~~v~~~~V~~~~~Gg~ 575 (577)
......|+|+|||+|.|. +++|||+||+|+ .+++||+|||+.|+++++++|++.++||.
T Consensus 235 --------------~~~~~~Y~L~avv~H~G~-~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~gg~ 294 (353)
T 1nb8_A 235 --------------PKDPANYILHAVLVHSGD-NHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGH 294 (353)
T ss_dssp --------------TTSCCEEEEEEEEEEESS-TTCCCEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCC
T ss_pred --------------CCCCceEEEEEEEEEeCC-CCCcEEEEEEecCCCCCEEEEECcceEECCHHHHHHHhcCCC
Confidence 011347999999999996 899999999996 48899999999999999999999888773
No 5
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=100.00 E-value=2.9e-55 Score=457.36 Aligned_cols=292 Identities=23% Similarity=0.331 Sum_probs=245.2
Q ss_pred cccccccCCCCCchhHHHHHHHhhccHHHHHHHHhhcC----CCCCCCCChhhHHHHHHHHHHHHhcCCCCCCCChHHHH
Q psy7711 187 RYLPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKG----GLQPGSNPAQSITASLRDLYECMDNMKISPSISPFIML 262 (577)
Q Consensus 187 ~~~~~GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~----~~~~~~~~~~~l~~~L~~Lf~~l~~~~~~~~i~P~~~~ 262 (577)
..+.+||.|+||||||||+||||+++|+|+++++.... ...........+..+|..|+..|+.+. ...++|..|+
T Consensus 59 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~-~~~i~P~~f~ 137 (396)
T 2gfo_A 59 GPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQ-YRYISPKDFK 137 (396)
T ss_dssp STTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSC-EEEECCHHHH
T ss_pred CCCcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccCCCCcccHHHHHHHHHHHHHHcCC-CceECHHHHH
Confidence 35679999999999999999999999999999976321 111111234578899999999999875 5689999999
Q ss_pred HHHHhhCCccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC----------------------CCCccchhhhc
Q psy7711 263 QVLHNVFPRFADKTDDGSYMQQDANECWTEMVRMLKTALPGENEEGQ----------------------DSAKSSFIEQY 320 (577)
Q Consensus 263 ~~l~~~~~~f~~~~~~~~~~QqDA~Efl~~ll~~L~~~~~~~~~~~~----------------------~~~~~~~i~~l 320 (577)
.+++...+.|. ++.||||+|||.+|||.|++++........ .....++|.++
T Consensus 138 ~~l~~~~~~f~------~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~l 211 (396)
T 2gfo_A 138 ITIGKINDQFA------GYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVAL 211 (396)
T ss_dssp HHHHHHCGGGS------SSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHHhchhhc------CCCCCChHHHHHHHHHHHHHHHhhhccccccccccccccchhhHHHHHHHHhhhccCCccchh
Confidence 99999999998 899999999999999999999865422100 01235789999
Q ss_pred cceEEeEEEEcCCCCCCCCCcccccceeeeeccCCC-ccchhHHHhhhhhhhhh-----ccCcCCCCCceEEEEEEeccC
Q psy7711 321 FYTIMDTELKCSESETEPPTKGTESFQQLSCYITTD-VKYMLPGLKNKLQDQIT-----KRSPSLDRDAVYVKTSKVSRL 394 (577)
Q Consensus 321 F~g~~~~~~~C~~c~~~~~s~~~e~f~~L~l~i~~~-~~~l~~~l~~~~~e~i~-----~~c~~c~~~~~~~k~~~i~~l 394 (577)
|+|++.++++|..|+.. +.+.|+|+.|+|+|+.. ..+|++||+.|+.++.. ++|+.|+....+.|+..|.+|
T Consensus 212 F~G~l~s~i~C~~C~~~--s~~~e~f~~LsL~ip~~~~~sL~~~L~~f~~~E~l~~~n~~~C~~C~~~~~a~k~~~i~~l 289 (396)
T 2gfo_A 212 FQGQFKSTVQCLTCHKK--SRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKL 289 (396)
T ss_dssp HCEEEEEEEEETTTCCE--EEEEEEESSEEECCSCSSEEEHHHHHHHHTSCEEECSTTCEEETTTTEEECEEEEEEEEEC
T ss_pred hCcEEEEEEEeCCCCce--ecccccceeeeecccccccCCHHHHHHHhCCcccccCCcccccCCcccccceEEEEEEecC
Confidence 99999999999999985 68899999999999864 45899999999985543 589999999999999999999
Q ss_pred CCceEEEEEEEEEeccccccccccccccCCc-cccccccCCHHHHhccccchHHHHHHHHHHHHHHHhhhhcccCCCchh
Q psy7711 395 PAYLTIQFVRFFYKEKERINAKVLKDIKFPI-EFDAYELCTPELQAKLAPMREKFKIAEEKEAFEEFRTQYVFISIPMDE 473 (577)
Q Consensus 395 P~~L~i~l~Rf~~~~~~~~~~Ki~~~V~fp~-~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (577)
|+||+|||+||.|+.. ...|+...|.||. .|||.+|+...
T Consensus 290 P~vLiihLkRF~~~~~--~~~K~~~~v~fp~~~Ldl~~~~~~~------------------------------------- 330 (396)
T 2gfo_A 290 PPVLLVHLKRFSYDGR--WKQKLQTSVDFPLENLDLSQYVIGP------------------------------------- 330 (396)
T ss_dssp CSEEEEEECCEEECSS--SEEECCCEEECCSSCBCCGGGBCSC-------------------------------------
T ss_pred CcEEEEEecceeccCc--cceecCceEecchhhccccccccCC-------------------------------------
Confidence 9999999999999863 4689999999996 69998885421
Q ss_pred hhhhhcccccCCccccccccccccchhcccCCCCCCCCCCCCCCCceeEEEeEEEEeecCCCCCCceEEEEECC-CCcEE
Q psy7711 474 IYVRFGQKIYAPVGDRIQDFGVKSTEFQSRGQGSSPGRVDIGSNNSGYYTLQAVLTHKGRTSSSGHYVAWVKKP-NGTWI 552 (577)
Q Consensus 474 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~~GHY~a~vr~~-~~~W~ 552 (577)
......|+|+|||+|.| ++++|||+||+|+. +++||
T Consensus 331 ------------------------------------------~~~~~~Y~L~avv~H~G-~~~~GHY~a~v~~~~~~~W~ 367 (396)
T 2gfo_A 331 ------------------------------------------KNNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWF 367 (396)
T ss_dssp ------------------------------------------CSSCCCBEEEEEEEEES-CTTTCEEEEEEEETTTTEEE
T ss_pred ------------------------------------------CCCCceEEEEEEEEecC-CCCCCceEEEEcCCCCCCEE
Confidence 01124799999999999 79999999999985 78999
Q ss_pred EEeCCcceecChhhhhc
Q psy7711 553 KCDDDKVYPISEEEVLK 569 (577)
Q Consensus 553 ~~nD~~V~~v~~~~V~~ 569 (577)
+|||+.|+++++++|..
T Consensus 368 ~fnD~~V~~v~~~~v~~ 384 (396)
T 2gfo_A 368 KFDDHEVSDISVSSVKS 384 (396)
T ss_dssp EEETTEEEECCHHHHSC
T ss_pred EEeCCCeEECCHHHcCC
Confidence 99999999999999874
No 6
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=100.00 E-value=5.9e-55 Score=449.11 Aligned_cols=293 Identities=25% Similarity=0.394 Sum_probs=247.8
Q ss_pred ccccccccCCCCCchhHHHHHHHhhccHHHHHHHHhhcCC--CCCCCCChhhHHHHHHHHHHHHhcCCCCCCCChHHHHH
Q psy7711 186 GRYLPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGG--LQPGSNPAQSITASLRDLYECMDNMKISPSISPFIMLQ 263 (577)
Q Consensus 186 ~~~~~~GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~~--~~~~~~~~~~l~~~L~~Lf~~l~~~~~~~~i~P~~~~~ 263 (577)
...+.+||.|+||||||||+||+|+++|+||+++++.... .........++.++|+.||..|+.......++|..|+.
T Consensus 5 ~~~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~p~~~~~ 84 (348)
T 3nhe_A 5 SAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEFKT 84 (348)
T ss_dssp -CCSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSSCCTTHHHHHHHHHHHHHHTTCCTTCEECCHHHHH
T ss_pred CCCCCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhccCCCcccHHHHHHHHHHHHHHcCCCCCccCHHHHHH
Confidence 4567899999999999999999999999999999864321 11223456789999999999999543367899999999
Q ss_pred HHHhhCCccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCC----------------------CCccchhhhcc
Q psy7711 264 VLHNVFPRFADKTDDGSYMQQDANECWTEMVRMLKTALPGENEEGQD----------------------SAKSSFIEQYF 321 (577)
Q Consensus 264 ~l~~~~~~f~~~~~~~~~~QqDA~Efl~~ll~~L~~~~~~~~~~~~~----------------------~~~~~~i~~lF 321 (577)
++....+.|. ++.||||+|||..||+.|++++......... ....++|.++|
T Consensus 85 ~l~~~~~~f~------~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F 158 (348)
T 3nhe_A 85 QIQRYAPRFV------GYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLF 158 (348)
T ss_dssp HHHHHSGGGS------SSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHhhhhhC------CCCccCHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHhhcCCcccccc
Confidence 9999999998 8899999999999999999998654321110 12356799999
Q ss_pred ceEEeEEEEcCCCCCCCCCcccccceeeeeccCCCc---cchhHHHhhhhhhhhh-----ccCcCCCCCceEEEEEEecc
Q psy7711 322 YTIMDTELKCSESETEPPTKGTESFQQLSCYITTDV---KYMLPGLKNKLQDQIT-----KRSPSLDRDAVYVKTSKVSR 393 (577)
Q Consensus 322 ~g~~~~~~~C~~c~~~~~s~~~e~f~~L~l~i~~~~---~~l~~~l~~~~~e~i~-----~~c~~c~~~~~~~k~~~i~~ 393 (577)
+|++.++++|..|+.. +.+.|+|+.|+|+|+... .+|.++|+.++.++.. ++|+.|+....+.|+..|.+
T Consensus 159 ~g~~~~~~~C~~C~~~--s~~~e~f~~LsL~i~~~~~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~ 236 (348)
T 3nhe_A 159 VGQLKSSLTCTDCGYC--STVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQR 236 (348)
T ss_dssp CEEEEEEEEETTTCCE--EEEEEEESSEEECCCSSCSSCEEHHHHHHHHHSCEEECGGGCCEETTTTEECCEEEEEEEEE
T ss_pred ceEEEEEEEcCCCCCE--eeeeccceEEeeeCCCcccCCCCHHHHHHHhcCceEecCCCceECCCCCCcccEEEEEEeec
Confidence 9999999999999985 688999999999997632 4899999999986654 57999999999999999999
Q ss_pred CCCceEEEEEEEEEeccccccccccccccCCc-cccccccCCHHHHhccccchHHHHHHHHHHHHHHHhhhhcccCCCch
Q psy7711 394 LPAYLTIQFVRFFYKEKERINAKVLKDIKFPI-EFDAYELCTPELQAKLAPMREKFKIAEEKEAFEEFRTQYVFISIPMD 472 (577)
Q Consensus 394 lP~~L~i~l~Rf~~~~~~~~~~Ki~~~V~fp~-~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (577)
+|+||+|||+||.++. +...|+...|.||. .|||.+|+...
T Consensus 237 lP~vL~i~lkRf~~~~--~~~~K~~~~v~fp~~~ldl~~~~~~~------------------------------------ 278 (348)
T 3nhe_A 237 FPKILVLHLKRFSESR--IRTSKLTTFVNFPLRDLDLREFASEN------------------------------------ 278 (348)
T ss_dssp CCSEEEEEECCBCCCS--SCCCBCCCCEECCSSCEECGGGBCTT------------------------------------
T ss_pred CCceEEEEEEcccccC--CceeecCcceeccCCcCCHhhhcCCC------------------------------------
Confidence 9999999999998875 56899999999995 79998875321
Q ss_pred hhhhhhcccccCCccccccccccccchhcccCCCCCCCCCCCCCCCceeEEEeEEEEeecCCCCCCceEEEEECC-CCcE
Q psy7711 473 EIYVRFGQKIYAPVGDRIQDFGVKSTEFQSRGQGSSPGRVDIGSNNSGYYTLQAVLTHKGRTSSSGHYVAWVKKP-NGTW 551 (577)
Q Consensus 473 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~~GHY~a~vr~~-~~~W 551 (577)
.....|+|+|||+|.| ++++|||+||+|.+ +++|
T Consensus 279 --------------------------------------------~~~~~Y~L~avv~H~G-~~~~GHY~~~~~~~~~~~W 313 (348)
T 3nhe_A 279 --------------------------------------------TNHAVYNLYAVSNHSG-TTMGGHYTAYCRSPGTGEW 313 (348)
T ss_dssp --------------------------------------------CCCCEEEEEEEEEEEE-CSSCEEEEEEEECTTTCCE
T ss_pred --------------------------------------------CCCCcEEEEEEEEccC-CCCCcccEEEEccCCCCcE
Confidence 0124799999999999 58999999999985 7899
Q ss_pred EEEeCCcceecChhhhhc
Q psy7711 552 IKCDDDKVYPISEEEVLK 569 (577)
Q Consensus 552 ~~~nD~~V~~v~~~~V~~ 569 (577)
|+|||+.|+++++++|..
T Consensus 314 ~~~nD~~V~~v~~~~v~~ 331 (348)
T 3nhe_A 314 HTFNDSSVTPMSSSQVRT 331 (348)
T ss_dssp EEEETTEEEEECGGGTCC
T ss_pred EEEeCCCceECCHHHcCC
Confidence 999999999999999964
No 7
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=100.00 E-value=1.1e-54 Score=448.27 Aligned_cols=290 Identities=24% Similarity=0.359 Sum_probs=240.1
Q ss_pred cccccCCCCCchhHHHHHHHhhccHHHHHHHHhhcCCC-CCCCCChhhHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHh
Q psy7711 189 LPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGL-QPGSNPAQSITASLRDLYECMDNMKISPSISPFIMLQVLHN 267 (577)
Q Consensus 189 ~~~GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~~~-~~~~~~~~~l~~~L~~Lf~~l~~~~~~~~i~P~~~~~~l~~ 267 (577)
|.+||.|+||||||||+||+|+++|+||+++++..... ........++..+|+.||..|+.......++|..|+.+++.
T Consensus 2 G~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~v~p~~~~~~l~~ 81 (355)
T 3i3t_A 2 GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWHPDSCEAVNPTRFRAVFQK 81 (355)
T ss_dssp -CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC------CHHHHHHHHHHHHTSSCSSCCCBCCHHHHHHHHH
T ss_pred CCcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcCCCCchhHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Confidence 67999999999999999999999999999997643110 01122345799999999999998754578999999999999
Q ss_pred hCCccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCC-------------------------------------
Q psy7711 268 VFPRFADKTDDGSYMQQDANECWTEMVRMLKTALPGENEEGQD------------------------------------- 310 (577)
Q Consensus 268 ~~~~f~~~~~~~~~~QqDA~Efl~~ll~~L~~~~~~~~~~~~~------------------------------------- 310 (577)
..+.|. ++.||||+|||.+||+.|++++.........
T Consensus 82 ~~~~f~------~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (355)
T 3i3t_A 82 YVPSFS------GYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYL 155 (355)
T ss_dssp HCGGGC------SSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHHHH
T ss_pred hChhhC------CCCccCHHHHHHHHHHHHHHHHhhhccCCCcccccCcccCccccccccccCCCCCHHHHHHHHHHHhh
Confidence 999998 8999999999999999999998664321100
Q ss_pred CCccchhhhccceEEeEEEEcCCCCCCCCCcccccceeeeeccCCC-----ccchhHHHhhhhhhhh-h----ccCcCCC
Q psy7711 311 SAKSSFIEQYFYTIMDTELKCSESETEPPTKGTESFQQLSCYITTD-----VKYMLPGLKNKLQDQI-T----KRSPSLD 380 (577)
Q Consensus 311 ~~~~~~i~~lF~g~~~~~~~C~~c~~~~~s~~~e~f~~L~l~i~~~-----~~~l~~~l~~~~~e~i-~----~~c~~c~ 380 (577)
....++|.++|+|++.+.++|..|+.. +.+.|+|+.|+|+|+.. ..+|.++|+.|+.++. . ++|+.|+
T Consensus 156 ~~~~s~i~~~F~g~~~~~~~C~~C~~~--s~~~e~f~~lsl~i~~~~~~~~~~sl~~~L~~~~~~e~l~~~n~~~C~~C~ 233 (355)
T 3i3t_A 156 EREDSKIVDLFVGQLKSCLKCQACGYR--STTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCR 233 (355)
T ss_dssp HHCCSHHHHHHCEEEEEEEEETTTCCE--EEEEEEESSEEECCCC-------CBHHHHHHHHHCCEEECGGGCCCCSSSC
T ss_pred hccCCcccccccEEEEeeEEeCCCCCC--ceeeccceeecccCCccccccCccCHHHHHHHhCCccccCCCCCeeCCCCC
Confidence 113467999999999999999999995 68899999999999753 3489999999998543 3 6899999
Q ss_pred CCceEEEEEEeccCCCceEEEEEEEEEeccccccccccccccCCc-cccccccCCHHHHhccccchHHHHHHHHHHHHHH
Q psy7711 381 RDAVYVKTSKVSRLPAYLTIQFVRFFYKEKERINAKVLKDIKFPI-EFDAYELCTPELQAKLAPMREKFKIAEEKEAFEE 459 (577)
Q Consensus 381 ~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~V~fp~-~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 459 (577)
....+.|+..|.++|++|+|||+||.++. +...|+...|.||. .|||.+|+....
T Consensus 234 ~~~~a~k~~~i~~lP~vL~i~lkRF~~~~--~~~~K~~~~v~fp~~~l~l~~~~~~~~---------------------- 289 (355)
T 3i3t_A 234 QKTRSTKKLTVQRFPRILVLHLNRFSASR--GSIKKSSVGVDFPLQRLSLGDFASDKA---------------------- 289 (355)
T ss_dssp CCCCEEEEEEEEECCSEEEEEECCEECCS--SCCEECCCCCBCCSSCEECGGGBC-------------------------
T ss_pred CccceEEEEEcccCChheEEEhhheecCC--CCceECCcceeCCccccCchhhccCCC----------------------
Confidence 99999999999999999999999999875 56789999999995 599988764321
Q ss_pred HhhhhcccCCCchhhhhhhcccccCCccccccccccccchhcccCCCCCCCCCCCCCCCceeEEEeEEEEeecCCCCCCc
Q psy7711 460 FRTQYVFISIPMDEIYVRFGQKIYAPVGDRIQDFGVKSTEFQSRGQGSSPGRVDIGSNNSGYYTLQAVLTHKGRTSSSGH 539 (577)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~~GH 539 (577)
....|+|+|||+|.| ++++||
T Consensus 290 ----------------------------------------------------------~~~~Y~L~avv~H~G-~~~~GH 310 (355)
T 3i3t_A 290 ----------------------------------------------------------GSPVYQLYALCNHSG-SVHYGH 310 (355)
T ss_dssp -----------------------------------------------------------CCEEEEEEEEEEEE-ETTEEE
T ss_pred ----------------------------------------------------------CCcceEEEEEEEecC-CCCCCe
Confidence 123799999999999 599999
Q ss_pred eEEEEECCCCcEEEEeCCcceecChhhhhcc
Q psy7711 540 YVAWVKKPNGTWIKCDDDKVYPISEEEVLKL 570 (577)
Q Consensus 540 Y~a~vr~~~~~W~~~nD~~V~~v~~~~V~~~ 570 (577)
|+||+|. ++.||+|||+.|+++++++|+..
T Consensus 311 Y~~~~~~-~~~W~~~nD~~V~~v~~~~v~~~ 340 (355)
T 3i3t_A 311 YTALCRC-QTGWHVYNDSRVSPVSENQVASS 340 (355)
T ss_dssp EEEEEEE-TTEEEEEETTEEEEECHHHHHTS
T ss_pred EEEEEEc-CCeEEEEcCCCcEECCHHHcCCC
Confidence 9999999 67899999999999999999763
No 8
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=100.00 E-value=3.3e-52 Score=449.76 Aligned_cols=286 Identities=23% Similarity=0.387 Sum_probs=240.3
Q ss_pred cccccccCCCCCchhHHHHHHHhhccHHHHHHHHhhcCCCCCCCCChhhHHHHHHHHHHHHhcCCCCCCCChHHHHHHHH
Q psy7711 187 RYLPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDNMKISPSISPFIMLQVLH 266 (577)
Q Consensus 187 ~~~~~GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~l~~~L~~Lf~~l~~~~~~~~i~P~~~~~~l~ 266 (577)
..+++||.|+||||||||+||+|+++|+||++++...... .....++.++|+.||..|+.+ ..++.|..|+..+.
T Consensus 172 ~~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~~---~~~~~~~~~~l~~lf~~l~~~--~~~~~~~~l~~~~~ 246 (522)
T 2f1z_A 172 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG---DDSSKSVPLALQRVFYELQHS--DKPVGTKKLTKSFG 246 (522)
T ss_dssp TTSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCCS---SCTTTCHHHHHHHHHHHHHHC--SSCBCCTTHHHHTC
T ss_pred cCCccceecCcccHHHHHHHHHHhccHHHHHHHhhccccC---CcccchHHHHHHHHHHHHhcC--CCccCcHHHHhhcC
Confidence 4568999999999999999999999999999998654321 233457899999999999987 46788988877664
Q ss_pred hhCCccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCCCccchhhhccceEEeEEEEcCCCCCCCCCcccccc
Q psy7711 267 NVFPRFADKTDDGSYMQQDANECWTEMVRMLKTALPGENEEGQDSAKSSFIEQYFYTIMDTELKCSESETEPPTKGTESF 346 (577)
Q Consensus 267 ~~~~~f~~~~~~~~~~QqDA~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~i~~lF~g~~~~~~~C~~c~~~~~s~~~e~f 346 (577)
.+.|. ++.||||+|||..||+.|++++... ...++|.++|+|++.+.++|..|+.. +.+.|+|
T Consensus 247 --~~~~~------~~~QqDa~Efl~~LLd~L~~~l~~~-------~~~s~i~~lF~G~~~s~i~C~~C~~~--s~~~e~f 309 (522)
T 2f1z_A 247 --WETLD------SFMQHDVQELCRVLLDNVENKMKGT-------CVEGTIPKLFRGKMVSYIQCKEVDYR--SDRREDY 309 (522)
T ss_dssp --CCTTT------SSTTSCHHHHHHHHHHHHHHHHTTS-------TTTTHHHHHHCEEEEEEECCSSSCCC--CCEEEEE
T ss_pred --CccCC------CcccccHHHHHHHHHHHHHhhccCC-------ccccchhhheeEEEEEEEEcCCCCce--eeeeeee
Confidence 25565 8899999999999999999987643 23568999999999999999999985 6789999
Q ss_pred eeeeeccCCCccchhHHHhhhhhhhhh-----ccCcCCCCCceEEEEEEeccCCCceEEEEEEEEEeccccccccccccc
Q psy7711 347 QQLSCYITTDVKYMLPGLKNKLQDQIT-----KRSPSLDRDAVYVKTSKVSRLPAYLTIQFVRFFYKEKERINAKVLKDI 421 (577)
Q Consensus 347 ~~L~l~i~~~~~~l~~~l~~~~~e~i~-----~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~V 421 (577)
+.|+|+|+. ..++.++|+.|+..+.. +.|+.|+ ...+.|+..|.+||+||+|||+||.|+...+...|++..|
T Consensus 310 ~~LsL~i~~-~~~l~~~L~~~~~~E~l~~~n~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v 387 (522)
T 2f1z_A 310 YDIQLSIKG-KKNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRF 387 (522)
T ss_dssp SCEEECCTT-CCBHHHHHHHHTCEEEECTTSCBCCGGGC-SBCEEEEEEESCCCSEEEEEECCEEECSSSSCEEECCCCC
T ss_pred EEEEEEeCC-cccchHHHHHhhceeecCCcceeecCcCC-ccceEEEEEeecCCceEEEEEEeEEEcccCCcceEcCcEE
Confidence 999999974 46799999999875433 4688875 4568999999999999999999999998777789999999
Q ss_pred cCCccccccccCCHHHHhccccchHHHHHHHHHHHHHHHhhhhcccCCCchhhhhhhcccccCCccccccccccccchhc
Q psy7711 422 KFPIEFDAYELCTPELQAKLAPMREKFKIAEEKEAFEEFRTQYVFISIPMDEIYVRFGQKIYAPVGDRIQDFGVKSTEFQ 501 (577)
Q Consensus 422 ~fp~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 501 (577)
.||..|||.+|+...-
T Consensus 388 ~fp~~Ldl~~~~~~~~---------------------------------------------------------------- 403 (522)
T 2f1z_A 388 EFPEQLPLDEFLQKTD---------------------------------------------------------------- 403 (522)
T ss_dssp BCCSEEECGGGBSSCC----------------------------------------------------------------
T ss_pred eCCCeecchhhhcccc----------------------------------------------------------------
Confidence 9999999988864210
Q ss_pred ccCCCCCCCCCCCCCCCceeEEEeEEEEeecCCCCCCceEEEEEC-CCCcEEEEeCCcceecChhhhhccCCCCC
Q psy7711 502 SRGQGSSPGRVDIGSNNSGYYTLQAVLTHKGRTSSSGHYVAWVKK-PNGTWIKCDDDKVYPISEEEVLKLSGGGK 575 (577)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~~GHY~a~vr~-~~~~W~~~nD~~V~~v~~~~V~~~~~Gg~ 575 (577)
......|+|+|||+|.|. +++|||+||+|+ .+++||+|||+.|+++++++|+..++||.
T Consensus 404 --------------~~~~~~Y~L~avv~H~G~-~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~ 463 (522)
T 2f1z_A 404 --------------PKDPANYILHAVLVHSGD-NHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGH 463 (522)
T ss_dssp --------------TTSCCEEEEEEEEEEECS-SSCSEEEEEECTTSSSCCEEEETTEEEECCHHHHSTTSSCCC
T ss_pred --------------CCCCcEEEEEEEEEeccc-CCCceEEEEEecCCCCCEEEEECceeEECCHHHHHHhhcCCC
Confidence 011347999999999997 899999999996 48899999999999999999999888874
No 9
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=100.00 E-value=3.5e-52 Score=445.78 Aligned_cols=304 Identities=22% Similarity=0.366 Sum_probs=243.9
Q ss_pred ccccccccCCCCCchhHHHHHHHhhccHHHHHHHHhhcCCC-CCCCCChhhHHHHHHHHHHHHhcCCC--------CCCC
Q psy7711 186 GRYLPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGL-QPGSNPAQSITASLRDLYECMDNMKI--------SPSI 256 (577)
Q Consensus 186 ~~~~~~GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~~~-~~~~~~~~~l~~~L~~Lf~~l~~~~~--------~~~i 256 (577)
...+.+||.|+||||||||+||+|+++|+||++++...... .....+..++.++|..+|..|+.... ...+
T Consensus 137 ~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~ 216 (476)
T 3mhs_A 137 RRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQASSSSTSTN 216 (476)
T ss_dssp GTTCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSCCTTTCHHHHHHHHHHHHHSCCCC--------CCC
T ss_pred CCCCCCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhhhccCCCcccchHHHHHHHHHHHhhccccccccccccccc
Confidence 45678999999999999999999999999999998543211 11234556899999999999987421 1245
Q ss_pred ChHHHHHHHH---hhCCccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC------CCCCCCccchhhhccceEEeE
Q psy7711 257 SPFIMLQVLH---NVFPRFADKTDDGSYMQQDANECWTEMVRMLKTALPGENE------EGQDSAKSSFIEQYFYTIMDT 327 (577)
Q Consensus 257 ~P~~~~~~l~---~~~~~f~~~~~~~~~~QqDA~Efl~~ll~~L~~~~~~~~~------~~~~~~~~~~i~~lF~g~~~~ 327 (577)
.|..+...+. +..+.|. ++.||||+|||.+||+.|++++..... ........++|.++|+|.+.+
T Consensus 217 ~~~~~~~~l~~~~~~~~~f~------~~~QqDA~EFl~~LLd~L~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~G~l~~ 290 (476)
T 3mhs_A 217 RQTGFIYLLTCAWKINQNLA------GYSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNKQCECIVHTVFEGSLES 290 (476)
T ss_dssp SCHHHHHHHHHHHHHCGGGS------SSSCEEHHHHHHHHHHHHHHHHHHHCCC-------CCCSCCSHHHHHSCEEEEE
T ss_pred CcchHHHHHHHHHHhccccC------CCCCcCHHHHHHHHHHHHHHHHhhcccccccccccccccCCCcceeecceEEEE
Confidence 6766655554 7888898 899999999999999999988643211 112234567899999999999
Q ss_pred EEEcCCCCCCCCCcccccceeeeeccCCCccchhHHHhhhhhhh-hh---ccCcCCCCCceEEEEEEeccCCCceEEEEE
Q psy7711 328 ELKCSESETEPPTKGTESFQQLSCYITTDVKYMLPGLKNKLQDQ-IT---KRSPSLDRDAVYVKTSKVSRLPAYLTIQFV 403 (577)
Q Consensus 328 ~~~C~~c~~~~~s~~~e~f~~L~l~i~~~~~~l~~~l~~~~~e~-i~---~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~ 403 (577)
+++|..|+..+ ..+.|+|+.|+++|+. ..+|.++|+.|+..+ +. ++|+.|+....+.|+..|.+||+||+|||+
T Consensus 291 ~~~C~~C~~~s-~~~~e~f~~LsL~i~~-~~sl~~~L~~~~~~E~l~~~~~~C~~C~~~~~a~k~~~i~~lP~vL~i~Lk 368 (476)
T 3mhs_A 291 SIVCPGCQNNS-KTTIDPFLDLSLDIKD-KKKLYECLDSFHKKEQLKDFNYHCGECNSTQDAIKQLGIHKLPSVLVLQLK 368 (476)
T ss_dssp EEECTTTCCCC-EEEEEEESCEEECCTT-CCBHHHHHHHHHCCEECSSCCCEETTTTEECCCEEEEEEEEBCSEEEEEEC
T ss_pred EEEECCCCCee-CCcccchhhhccchhh-hhHHHHHHHHhcChhhccCCCCcCCccCCcccEEEEEEcccCCcceEEEee
Confidence 99999999852 2458999999999964 468999999999744 44 689999999999999999999999999999
Q ss_pred EEEEeccccccccccccccCCccccccccCCHHHHhccccchHHHHHHHHHHHHHHHhhhhcccCCCchhhhhhhccccc
Q psy7711 404 RFFYKEKERINAKVLKDIKFPIEFDAYELCTPELQAKLAPMREKFKIAEEKEAFEEFRTQYVFISIPMDEIYVRFGQKIY 483 (577)
Q Consensus 404 Rf~~~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (577)
||.|+.. +...|+...|.||..|||.+|+.......
T Consensus 369 RF~~~~~-~~~~K~~~~V~fP~~Ldl~~~~~~~~~~~------------------------------------------- 404 (476)
T 3mhs_A 369 RFEHLLN-GSNRKLDDFIEFPTYLNMKNYCSTKEKDK------------------------------------------- 404 (476)
T ss_dssp CEEECTT-SCEEECCCCCBCCSEEECGGGBSCCBCCC-------------------------------------------
T ss_pred eccccCC-CCeEECCEEEcCCCeeechhhcCcccccc-------------------------------------------
Confidence 9999863 66899999999999999999875431000
Q ss_pred CCccccccccccccchhcccCCCCCCCCCCCCCCCceeEEEeEEEEeecCCCCCCceEEEEECCCCcEEEEeCCcceecC
Q psy7711 484 APVGDRIQDFGVKSTEFQSRGQGSSPGRVDIGSNNSGYYTLQAVLTHKGRTSSSGHYVAWVKKPNGTWIKCDDDKVYPIS 563 (577)
Q Consensus 484 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~~GHY~a~vr~~~~~W~~~nD~~V~~v~ 563 (577)
...........|+|+|||+|.|. +++|||+||+|..+++||+|||+.|++++
T Consensus 405 ---------------------------~~~~~~~~~~~Y~L~avv~H~G~-~~~GHY~a~vr~~~~~W~~fnD~~V~~v~ 456 (476)
T 3mhs_A 405 ---------------------------HSENGKVPDIIYELIGIVSHKGT-VNEGHYIAFCKISGGQWFKFNDSMVSSIS 456 (476)
T ss_dssp -----------------------------CCCBCCCEEEEEEEEEEEEEC-SSSEEEEEEEECTTSCEEEEETTEEEEEC
T ss_pred ---------------------------cccccCCCCCcEEEEEEEEeCCC-CCCCceEEEEECCCCcEEEEeCCceEECC
Confidence 00001123468999999999995 99999999999888999999999999999
Q ss_pred hhhhhc
Q psy7711 564 EEEVLK 569 (577)
Q Consensus 564 ~~~V~~ 569 (577)
+++|+.
T Consensus 457 ~~~v~~ 462 (476)
T 3mhs_A 457 QEEVLK 462 (476)
T ss_dssp HHHHTT
T ss_pred HHHhcc
Confidence 999976
No 10
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.4e-51 Score=459.43 Aligned_cols=232 Identities=22% Similarity=0.360 Sum_probs=200.5
Q ss_pred ccccccCCCCCchhHHHHHHHhhccHHHHHHHHhhcCCC--CCCCCChhhHHHHHHHHHHHHhcCC--------------
Q psy7711 188 YLPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGL--QPGSNPAQSITASLRDLYECMDNMK-------------- 251 (577)
Q Consensus 188 ~~~~GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~~~--~~~~~~~~~l~~~L~~Lf~~l~~~~-------------- 251 (577)
.+.+||.|+||||||||+||+|+++|+||++++...... .....+..++.++|++||..|++++
T Consensus 342 ~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~~~~~~ 421 (854)
T 3ihp_A 342 PGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDGERV 421 (854)
T ss_dssp TTCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHHHHHHHCCSCGGGCHHHHHHHHHHHHHSCC--------------
T ss_pred CCccceEecCCceehhHHHHHHhCcHHHHHHHHhhhhhhhccccCCccccHHHHHHHHHHHHhccccccccccccccccc
Confidence 467999999999999999999999999999997422110 0223566789999999999998753
Q ss_pred -----CCCCCChHHHHHHHHhhCCccccccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCCCccchhhhccceEEe
Q psy7711 252 -----ISPSISPFIMLQVLHNVFPRFADKTDDGSYMQQDANECWTEMVRMLKTALPGENEEGQDSAKSSFIEQYFYTIMD 326 (577)
Q Consensus 252 -----~~~~i~P~~~~~~l~~~~~~f~~~~~~~~~~QqDA~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~i~~lF~g~~~ 326 (577)
....++|..|+++++...+.|. +++||||+|||.+||+.|++++.. .+.+.++|+|.+.
T Consensus 422 ~~~~~~~~~isP~~f~~~l~~~~~~F~------~~~QQDA~EFl~~LLd~L~~el~~----------~s~i~~lF~G~l~ 485 (854)
T 3ihp_A 422 PEQKEVQDGIAPRMFKALIGKGHPEFS------TNRQQDAQEFFLHLINMVERNCRS----------SENPNEVFRFLVE 485 (854)
T ss_dssp -------CCBCCHHHHHHHTTTCTTTT------SSSCCBHHHHHHHHHHHHHHTCTT----------SCCGGGGTCEEEE
T ss_pred cccccCCCccChHHHHHHHhhhccccc------cccccCHHHHHHHHHHHHHHHhcc----------cCCchhhcCceEE
Confidence 2348999999999999999998 899999999999999999998854 3568999999999
Q ss_pred EEEEcCCCCCCCCCcccccceeeeeccCCCc-------------------------------cchhHHHhhhhhhh-hh-
Q psy7711 327 TELKCSESETEPPTKGTESFQQLSCYITTDV-------------------------------KYMLPGLKNKLQDQ-IT- 373 (577)
Q Consensus 327 ~~~~C~~c~~~~~s~~~e~f~~L~l~i~~~~-------------------------------~~l~~~l~~~~~e~-i~- 373 (577)
++++|..|++. +.+.++|+.|+|+|+... .+|.+||+.|+..+ +.
T Consensus 486 s~i~C~~C~~v--s~t~e~F~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~sL~dcL~~f~~~E~Le~ 563 (854)
T 3ihp_A 486 EKIKCLATEKV--KYTQRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKMALPELVRAQVPFSSCLEAYGAPEQVDD 563 (854)
T ss_dssp EEEEETTTTEE--EEEEEEESEEEECCCGGGCTTHHHHHHHHHHHHHHHHTTCCCCCCCCEECCHHHHHHHHHSCEEEEE
T ss_pred EEEEecCCCCE--eEEeeeceEEEeeCCccccccccchhhhcccccccccccccccccccCCCCHHHHHHHhcCceEeee
Confidence 99999999984 788999999999997521 37999999999854 55
Q ss_pred ccCcCCCCCceEEEEEEeccCCCceEEEEEEEEEeccccccccccccccCCccccccccCCHHHH
Q psy7711 374 KRSPSLDRDAVYVKTSKVSRLPAYLTIQFVRFFYKEKERINAKVLKDIKFPIEFDAYELCTPELQ 438 (577)
Q Consensus 374 ~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~ 438 (577)
++|+.|+....+.|+..|.+||+||+|||+||.|+.. +...|+..+|.||..|||++|+....+
T Consensus 564 y~C~~C~~k~~a~K~~~i~~lP~vLiihLkRF~~d~~-~~~~Ki~~~V~FP~~LDl~~y~~~~~q 627 (854)
T 3ihp_A 564 FWSTALQAKSVAVKTTRFASFPDYLVIQIKKFTFGLD-WVPKKLDVSIEMPEELDISQLRGTGLQ 627 (854)
T ss_dssp EEETTTTEEEEEEEEEEESSCCSEEEEEECCEEECGG-GCEEECCEECCCCSEEECGGGBCCCSC
T ss_pred eeccccCCcceeeEEEEeeeCCceEEEEeehheecCC-CceEECCeEEecCCcEehHHhccCCCC
Confidence 6899999999999999999999999999999999875 778999999999999999999987554
No 11
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=100.00 E-value=4.1e-43 Score=345.26 Aligned_cols=293 Identities=16% Similarity=0.193 Sum_probs=185.5
Q ss_pred cccccCCCCCchhHHHHHHHhhccHHHHHHHHhhcCCCCCCCCChhhHHHHH-HHHHHHHhcCCCCCCCChHHHHHHHHh
Q psy7711 189 LPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASL-RDLYECMDNMKISPSISPFIMLQVLHN 267 (577)
Q Consensus 189 ~~~GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~l~~~L-~~Lf~~l~~~~~~~~i~P~~~~~~l~~ 267 (577)
.|+||.|+||||||||.||+|+++|.+++.|+........ ......+..+| +.||..|.. ..+.|..|+..|++
T Consensus 8 ~p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~~~~~~~-~~~~~~l~~~L~r~i~~~Lrk----~~~~P~~~l~~LR~ 82 (374)
T 2vhf_A 8 KKKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKND-VEYYSETQELLRTEIVNPLRI----YGYVCATKIMKLRK 82 (374)
T ss_dssp ESCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHCCCCTTS-CTTHHHHHHHHHHTTHHHHHH----TSEECHHHHHHHHH
T ss_pred CCccccCCCcCcHHHHHHHHHHhchHHHHHHHhCCCCCCc-chhHHHHHHHHHHHHHHHHhh----cCCCcHHHHHHHHH
Confidence 5799999999999999999999999999999987654432 33445788899 899999997 38999999999999
Q ss_pred hCCccccccCCCCCCCCCHHHHHHHHHHHHHHh-CCCCCCCCCCCCccchhhhccceEEeEEEEcCCCCCCCCCcccccc
Q psy7711 268 VFPRFADKTDDGSYMQQDANECWTEMVRMLKTA-LPGENEEGQDSAKSSFIEQYFYTIMDTELKCSESETEPPTKGTESF 346 (577)
Q Consensus 268 ~~~~f~~~~~~~~~~QqDA~Efl~~ll~~L~~~-~~~~~~~~~~~~~~~~i~~lF~g~~~~~~~C~~c~~~~~s~~~e~f 346 (577)
.+|+|++. ..++++||||+|||..||..|... ..-...........+++.++|. +-+.+ ...+.+
T Consensus 83 ~~pQfae~-~G~~~~QQDaEE~~t~Ll~~L~~~ep~lkl~s~~~~~~~~~~~q~f~----------E~~e~---~~~e~~ 148 (374)
T 2vhf_A 83 ILEKVEAA-SGFTSEEKDPEEFLNILFHHILRVEPLLKIRSAGQKVQDCYFYQIFM----------EKNEK---VGVPTI 148 (374)
T ss_dssp HHHHHC---------CCCHHHHHHHHHTTTTCCCCSEEEEETTCCCEEESCEECCC----------CCC-----CCCCBH
T ss_pred HhHHHhcc-cCCCccccCHHHHHHHHHHHHhhcccccccccccccccccHHHHHhc----------Ccccc---cCCcHH
Confidence 99999977 223799999999999999988765 3211001111112246666666 11111 114455
Q ss_pred eeeeeccCCCccchhHHHhhhhhhhhhccCcCCCCCceEEEEEEeccCCCceEEEEEEEEEeccccccccccccccCCcc
Q psy7711 347 QQLSCYITTDVKYMLPGLKNKLQDQITKRSPSLDRDAVYVKTSKVSRLPAYLTIQFVRFFYKEKERINAKVLKDIKFPIE 426 (577)
Q Consensus 347 ~~L~l~i~~~~~~l~~~l~~~~~e~i~~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~V~fp~~ 426 (577)
..| .+++.|.++|+ |+++|+||+||+.|| +++.||.++|.||.+
T Consensus 149 ~qL-----~e~nfl~~gik-------------------------isrLP~yLtVq~vRF------gKkaKIlrkV~fp~e 192 (374)
T 2vhf_A 149 QQL-----LEWSFINSNLK-------------------------FAEAPSCLIIQMPRF------GKDFKLFKKIFPSLE 192 (374)
T ss_dssp HHH-----HHHHHHHHTEE-------------------------ESSCCSEEEEECCCC------SSSSSCCCCCBCCSE
T ss_pred HHh-----hhHHHHHcCCe-------------------------eecCCcceEEeeecc------CccccccCCCCCcch
Confidence 444 23344444432 999999999999999 678999999999999
Q ss_pred ccccccCCHHHHhccccchHHHHHHHHHHHHHHHhhhhcccCC-C--chhhhhhhcccccCCccccccccccccchhccc
Q psy7711 427 FDAYELCTPELQAKLAPMREKFKIAEEKEAFEEFRTQYVFISI-P--MDEIYVRFGQKIYAPVGDRIQDFGVKSTEFQSR 503 (577)
Q Consensus 427 Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 503 (577)
||+.++|++++++ .++|+++++.+-.+ ..+........ . ..... . .......+. ...+..+.
T Consensus 193 LDvtdl~tdelr~--~~vr~kl~e~e~~~---~~k~~k~~~~~~~~~~~~~~-~-----~~~~~~~~~----~~~~~~~~ 257 (374)
T 2vhf_A 193 LNITDLLEDTPRQ--CRICGGLAMYECRE---CYDDPDISAGKIKQFCKTCN-T-----QVHLHPKRL----NHKYNPVS 257 (374)
T ss_dssp ECCGGGBSSSCCB--CTTTSCBCCEECGG---GTTCTTTTTTSCCEECHHHH-H-----HHTTSGGGT----TCCCEECC
T ss_pred hccHhhcCcchhh--ccHhHHHHHHHHHH---HHhhhhccccccccccchhh-h-----hhhhhhhhh----cccccccc
Confidence 9999999999988 88888887762211 11100000000 0 00000 0 000000000 00011111
Q ss_pred CCCCCCC-CCCCCCCCceeEEEeEEEEeecCCCCCCceEEEEEC--CCCcEEEEeC
Q psy7711 504 GQGSSPG-RVDIGSNNSGYYTLQAVLTHKGRTSSSGHYVAWVKK--PNGTWIKCDD 556 (577)
Q Consensus 504 ~~~~~~~-~~~~~~~~~~~Y~L~aVI~H~G~s~~~GHY~a~vr~--~~~~W~~~nD 556 (577)
....++. ..+.+.+.++.|+|+|||+ +++|||+||||. .+++||+||-
T Consensus 258 ~~~~~~~~~~~~g~~psg~yeL~aVlt-----adsgHYvafVK~~~~d~~W~~FDs 308 (374)
T 2vhf_A 258 LPKDLPDWDWRHGCIPCQNMELFAVLC-----IETSHYVAFVKYGKDDSAWLFFDS 308 (374)
T ss_dssp C----------------CCEEEEEEEE-----EETTEEEEEEECSSSTTCEEEEET
T ss_pred cCccccccccccCCCCceeEEEEEEEE-----ccCCceEEEEEecCCCCCeEEEec
Confidence 1111110 1355677889999999999 799999999997 4899999995
No 12
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.82 E-value=2.9e-20 Score=151.31 Aligned_cols=86 Identities=57% Similarity=0.928 Sum_probs=78.6
Q ss_pred CCceEEEEEEeCCeEE-EEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCccccccccCCCceEEEeccccCCC
Q psy7711 8 PPHTYIVKVKWGKETF-EVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKNDEWDNFKLSNGSMVLLMGSKEEDS 86 (577)
Q Consensus 8 ~~~~~~i~vk~~~~~~-~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~~l~~~~~~~~~~i~l~gs~~~~~ 86 (577)
...+|+|+|||+|+.| +|+|++++||.+||++|++++|||+++|||+|+|+.|+|++|++|+|++|++|||||++++ +
T Consensus 4 ~~~~m~i~Vk~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~tL~~~~I~~g~~i~l~~~~~~-~ 82 (96)
T 1wgg_A 4 GSSGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDDDWGNIKMKNGMTVLMMGSADA-L 82 (96)
T ss_dssp CCCEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSSCCCSCCCCSSCEEECCCCCCC-C
T ss_pred CCcEEEEEEEECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCCCHHHCCCCCCCEEEEEecchh-c
Confidence 3468999999999999 6999999999999999999999999999999999999877999999999999999999987 6
Q ss_pred CCCccccc
Q psy7711 87 MKEPVVKP 94 (577)
Q Consensus 87 ~~~~~~~~ 94 (577)
+.+|.++.
T Consensus 83 ~~~p~~~~ 90 (96)
T 1wgg_A 83 PEEPSAKT 90 (96)
T ss_dssp CCCCCCSS
T ss_pred CCCCCcCC
Confidence 66666554
No 13
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.81 E-value=3.5e-20 Score=183.93 Aligned_cols=94 Identities=23% Similarity=0.459 Sum_probs=81.8
Q ss_pred ceEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEE---ecCCccCCc-cccccccCCCceEEEeccccCC
Q psy7711 10 HTYIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVM---CKGATLKND-EWDNFKLSNGSMVLLMGSKEED 85 (577)
Q Consensus 10 ~~~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~---~~g~~l~d~-~l~~~~~~~~~~i~l~gs~~~~ 85 (577)
++|+|+|||+|++|+|+|++++||++||++|+++|||||+||||| |+|+.|+|+ +|+++||++|++||||||++++
T Consensus 4 ~~i~i~Vk~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~~~ 83 (320)
T 3shq_A 4 KEVVVIVKWSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTEAD 83 (320)
T ss_dssp CEEEEEEEETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC--
T ss_pred ceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccchhh
Confidence 579999999999999999999999999999999999999999999 899999999 9999999999999999999886
Q ss_pred CC---CCccccccccccchhh
Q psy7711 86 SM---KEPVVKPKFVEDMNES 103 (577)
Q Consensus 86 ~~---~~~~~~~~~~ed~~~~ 103 (577)
++ .+|.++++|+|||+..
T Consensus 84 i~~~~~~p~~~~~~~eD~~~~ 104 (320)
T 3shq_A 84 IEDACSLPDNIGEVVDDFDDA 104 (320)
T ss_dssp --------CCCSCCCCTTCCC
T ss_pred hcccccCCCcCCcccccCCCc
Confidence 65 6889999999999853
No 14
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.79 E-value=1.6e-19 Score=145.54 Aligned_cols=77 Identities=31% Similarity=0.556 Sum_probs=73.5
Q ss_pred CCceEEEEEEeCCeEEEE-EeCCCCCHHHHHHHHHHHhCCCCCCceEE---ecCCccCCc-cccccccCCCceEEEeccc
Q psy7711 8 PPHTYIVKVKWGKETFEV-DVDTDEEPMLFKAQLYELTGVQIDRQKVM---CKGATLKND-EWDNFKLSNGSMVLLMGSK 82 (577)
Q Consensus 8 ~~~~~~i~vk~~~~~~~~-~v~~~~tv~~lk~~i~~~~~v~~~~qkl~---~~g~~l~d~-~l~~~~~~~~~~i~l~gs~ 82 (577)
.+.+|+|+|||+|+.|.| +|++++||.+||++|++++||||++|||+ |+|+.|+|+ +|++|+|++|++|||||++
T Consensus 4 ~~~~m~i~Vk~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 4 GSSGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp CCCSCCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred CCceEEEEEEECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence 345799999999999999 99999999999999999999999999999 999999999 9999999999999999999
Q ss_pred cC
Q psy7711 83 EE 84 (577)
Q Consensus 83 ~~ 84 (577)
++
T Consensus 84 ~~ 85 (90)
T 1v5t_A 84 ES 85 (90)
T ss_dssp SS
T ss_pred cc
Confidence 86
No 15
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.74 E-value=5.5e-18 Score=137.75 Aligned_cols=74 Identities=27% Similarity=0.435 Sum_probs=70.7
Q ss_pred ceEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEeccccC
Q psy7711 10 HTYIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGSKEE 84 (577)
Q Consensus 10 ~~~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs~~~ 84 (577)
.+|+|+|||+++.|.|+|++++||.+||++|++++|||+++|||+|+|+.| || +|++|+|++|++||||++++.
T Consensus 16 ~~~~i~Vk~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv~~~~~ 90 (95)
T 1v86_A 16 ELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVVGSTIS 90 (95)
T ss_dssp CCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEECCSSCC
T ss_pred ceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEEecccc
Confidence 469999999999999999999999999999999999999999999999999 66 999999999999999999865
No 16
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.71 E-value=2.3e-17 Score=129.63 Aligned_cols=76 Identities=17% Similarity=0.167 Sum_probs=67.4
Q ss_pred CCCCCCceEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEe
Q psy7711 4 FKGKPPHTYIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLM 79 (577)
Q Consensus 4 ~~~~~~~~~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~ 79 (577)
+++..+++|+|+||. .|+++.|++++++||.+||++|+++.|+||++|+|+|.|+.|+|+ +|++|+|.+|++|+|-
T Consensus 14 ~~~~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 14 LVPRGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp ------CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred ccCCCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 455567899999996 679999999999999999999999999999999999999999999 9999999999999984
No 17
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=4.5e-17 Score=131.99 Aligned_cols=77 Identities=23% Similarity=0.362 Sum_probs=72.0
Q ss_pred CCceEEEEEEeCCeEEEEEeCCC-----CCHHHHHHHHHHHhCCCCCCceEEecCCccCC-c-cccccccCCCceEEEec
Q psy7711 8 PPHTYIVKVKWGKETFEVDVDTD-----EEPMLFKAQLYELTGVQIDRQKVMCKGATLKN-D-EWDNFKLSNGSMVLLMG 80 (577)
Q Consensus 8 ~~~~~~i~vk~~~~~~~~~v~~~-----~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d-~-~l~~~~~~~~~~i~l~g 80 (577)
+..+|+|+|||.++.+.|+|+++ .||.+||++|++.+|||+++|||+|+|+.|+| + +|++|+|++|++|||++
T Consensus 4 ~~~~~~v~Vk~~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~ 83 (92)
T 1wxv_A 4 GSSGLTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIG 83 (92)
T ss_dssp CCSSEEEEEECSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEES
T ss_pred CCCeEEEEEEECCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEe
Confidence 35579999999999999999995 99999999999999999999999999999998 5 89999999999999999
Q ss_pred cccC
Q psy7711 81 SKEE 84 (577)
Q Consensus 81 s~~~ 84 (577)
++.+
T Consensus 84 ~~~~ 87 (92)
T 1wxv_A 84 KKNS 87 (92)
T ss_dssp CCSC
T ss_pred cCCC
Confidence 8866
No 18
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=8.9e-18 Score=133.05 Aligned_cols=74 Identities=18% Similarity=0.247 Sum_probs=67.2
Q ss_pred eEEEEEEeC-CeEEEEE--eCCCCCHHHHHHHH-HHHhCCCCCCceEEecCCccCCc-ccccccc-CCCceEEEeccccC
Q psy7711 11 TYIVKVKWG-KETFEVD--VDTDEEPMLFKAQL-YELTGVQIDRQKVMCKGATLKND-EWDNFKL-SNGSMVLLMGSKEE 84 (577)
Q Consensus 11 ~~~i~vk~~-~~~~~~~--v~~~~tv~~lk~~i-~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~-~~~~~i~l~gs~~~ 84 (577)
+|+|+||+. |+++.|+ +++++||.+||++| ++++|+|+++|||+|+|+.|+|+ +|++|+| ++|++|+|+|++.-
T Consensus 1 mmqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~~~ 80 (87)
T 2lxa_A 1 MVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPNL 80 (87)
T ss_dssp CCEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECCCC
T ss_pred CEEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCCCc
Confidence 489999985 4667766 44999999999999 99999999999999999999999 9999999 69999999999864
No 19
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.69 E-value=9.8e-17 Score=127.51 Aligned_cols=74 Identities=27% Similarity=0.367 Sum_probs=70.9
Q ss_pred ceEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEecccc
Q psy7711 10 HTYIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGSKE 83 (577)
Q Consensus 10 ~~~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs~~ 83 (577)
.++.+.++|+|+.+.|+|++++||.+||++|++.+|+|+++|||+|+|+.|+|+ +|++|||++|++|+|+++++
T Consensus 11 ~~~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s~~ 85 (85)
T 2kd0_A 11 STIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMASQG 85 (85)
T ss_dssp CCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECCCC
T ss_pred CcEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEeCC
Confidence 468899999999999999999999999999999999999999999999999999 99999999999999999874
No 20
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.68 E-value=5.3e-17 Score=131.54 Aligned_cols=74 Identities=19% Similarity=0.262 Sum_probs=67.0
Q ss_pred CceEEEEEEeC-CeEEEE--EeCCCCCHHHHHHHH-HHHhCCCCCCceEEecCCccCCc-ccccccc-CCCceEEEeccc
Q psy7711 9 PHTYIVKVKWG-KETFEV--DVDTDEEPMLFKAQL-YELTGVQIDRQKVMCKGATLKND-EWDNFKL-SNGSMVLLMGSK 82 (577)
Q Consensus 9 ~~~~~i~vk~~-~~~~~~--~v~~~~tv~~lk~~i-~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~-~~~~~i~l~gs~ 82 (577)
+++|+|+||+. |+.|.+ +|++++||.+||++| ++.+|+|+++|||+|+|+.|+|+ +|++|+| ++|++|+||+++
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 96 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence 46799999984 566655 667999999999999 88999999999999999999999 9999999 999999999986
No 21
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.68 E-value=4.3e-17 Score=135.34 Aligned_cols=74 Identities=19% Similarity=0.280 Sum_probs=67.9
Q ss_pred eEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEeccccC
Q psy7711 11 TYIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGSKEE 84 (577)
Q Consensus 11 ~~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs~~~ 84 (577)
+|+|+||+ +|+.+.|+|++++||.+||++|++.+|+|+++|||+|+|+.|+|+ +|++|||++|++|+|+.++..
T Consensus 1 mm~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~ 76 (106)
T 3m62_B 1 MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKK 76 (106)
T ss_dssp --CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC--
T ss_pred CEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCC
Confidence 48899997 678899999999999999999999999999999999999999999 999999999999999998765
No 22
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.1e-16 Score=129.65 Aligned_cols=76 Identities=8% Similarity=0.126 Sum_probs=68.0
Q ss_pred CCCceEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEe-cCCccCCc-cccccccCCCceEEEeccc
Q psy7711 7 KPPHTYIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMC-KGATLKND-EWDNFKLSNGSMVLLMGSK 82 (577)
Q Consensus 7 ~~~~~~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~-~g~~l~d~-~l~~~~~~~~~~i~l~gs~ 82 (577)
+.+.++.+.|+|.|+.++|+|++++||.+||++|+++|||||+||||++ +|+.|+|+ +|++|+|++|++|||+-..
T Consensus 5 ~~~~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gkL~D~~tLs~~~I~~gstL~lvl~~ 82 (100)
T 2dzm_A 5 SSGRMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKSLHLPKNNSLYVLTPD 82 (100)
T ss_dssp CCCCEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSCCCTTSBHHHHCCCSEEEEEECCSS
T ss_pred CCcceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCCCCCcCCHHHcCCCCCCEEEEEecC
Confidence 3445788999999999999999999999999999999999999999996 55559999 9999999999999998544
No 23
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.66 E-value=1.3e-16 Score=126.34 Aligned_cols=72 Identities=18% Similarity=0.292 Sum_probs=68.1
Q ss_pred eEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCc-cCCc-cccccccCCCceEEEeccc
Q psy7711 11 TYIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGAT-LKND-EWDNFKLSNGSMVLLMGSK 82 (577)
Q Consensus 11 ~~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~-l~d~-~l~~~~~~~~~~i~l~gs~ 82 (577)
-|+|+||. .|+.+.++|++++||.+||++|++.+|+|+++|||+|+|+. |+|+ +|++|||++|++|+|+.++
T Consensus 10 ~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p 84 (84)
T 2kk8_A 10 HMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVSS 84 (84)
T ss_dssp CEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred ceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence 59999995 67899999999999999999999999999999999999999 9999 9999999999999999764
No 24
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.65 E-value=1.9e-16 Score=127.37 Aligned_cols=71 Identities=14% Similarity=0.132 Sum_probs=67.5
Q ss_pred CceEEEEEEeC-CeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEe
Q psy7711 9 PHTYIVKVKWG-KETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLM 79 (577)
Q Consensus 9 ~~~~~i~vk~~-~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~ 79 (577)
+++|+|+||.. |+++.|+|++++||.+||++|++++|+|+++|||+|.|++|+|+ +|++|+|++|++|+|.
T Consensus 26 ~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 26 ATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp CCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 45799999975 78899999999999999999999999999999999999999999 9999999999999986
No 25
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.65 E-value=3.8e-16 Score=122.24 Aligned_cols=71 Identities=24% Similarity=0.531 Sum_probs=68.6
Q ss_pred EEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEeccc
Q psy7711 12 YIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGSK 82 (577)
Q Consensus 12 ~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs~ 82 (577)
|+|+||+.|+.+.++|++++||.+||++|++.+|+|+++|||+|+|+.|+|+ +|++|||++|++|+|++++
T Consensus 5 m~i~vk~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 5 LNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEEECCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence 8999999888999999999999999999999999999999999999999999 9999999999999999876
No 26
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.65 E-value=5.3e-17 Score=133.31 Aligned_cols=78 Identities=24% Similarity=0.538 Sum_probs=68.4
Q ss_pred CCCCCCCceEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEecc
Q psy7711 3 VFKGKPPHTYIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGS 81 (577)
Q Consensus 3 ~~~~~~~~~~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs 81 (577)
.|.+.| .|+|+|||+|+.+.|+|++++||.+||++|++.+|+|+++|||+|+|+.|+|+ +|++|||++|++|+|+.+
T Consensus 22 ~l~~~m--~i~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 22 YFQGAM--SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 99 (101)
T ss_dssp ---------CCEEEECSSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCC
T ss_pred cccCCc--EEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 355554 38899999889999999999999999999999999999999999999999999 999999999999999987
Q ss_pred c
Q psy7711 82 K 82 (577)
Q Consensus 82 ~ 82 (577)
+
T Consensus 100 ~ 100 (101)
T 3m63_B 100 Q 100 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 27
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.65 E-value=3.4e-16 Score=123.07 Aligned_cols=72 Identities=19% Similarity=0.173 Sum_probs=67.6
Q ss_pred CceEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEec
Q psy7711 9 PHTYIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMG 80 (577)
Q Consensus 9 ~~~~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~g 80 (577)
.+.|+|+||+ .|+.+.++|++++||.+||++|++.+|+||++|||+|+|+.|+|+ +|++|+|++|++|+|+.
T Consensus 2 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~ 75 (79)
T 3phx_B 2 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNL 75 (79)
T ss_dssp -CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred CCCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 3569999998 578899999999999999999999999999999999999999999 99999999999999984
No 28
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=2e-16 Score=127.28 Aligned_cols=81 Identities=10% Similarity=0.071 Sum_probs=69.4
Q ss_pred CCCCCCceEEEEEEe-C--CeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEe
Q psy7711 4 FKGKPPHTYIVKVKW-G--KETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLM 79 (577)
Q Consensus 4 ~~~~~~~~~~i~vk~-~--~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~ 79 (577)
|+..-+++++|.+.. . +++++|+|++++||.+||++|++..||||++|||||+||+|+|+ +|++|+|++|++||||
T Consensus 10 f~~tg~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl 89 (100)
T 1wju_A 10 YRTTGIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVL 89 (100)
T ss_dssp SSCCCEEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEE
T ss_pred hhhcceEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEE
Confidence 454445566666544 1 46799999999999999999999999999999999999999999 9999999999999999
Q ss_pred ccccC
Q psy7711 80 GSKEE 84 (577)
Q Consensus 80 gs~~~ 84 (577)
-.+..
T Consensus 90 ~lrg~ 94 (100)
T 1wju_A 90 ELKQS 94 (100)
T ss_dssp CCCCC
T ss_pred EECCC
Confidence 66554
No 29
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=7.6e-16 Score=125.35 Aligned_cols=73 Identities=23% Similarity=0.416 Sum_probs=68.9
Q ss_pred EEEEEEeC-CeEEEEEeCCCCCHHHHHHHHHHH---hCCCCCCceEEecCCccCCc-cccccccCCCceEEEeccccC
Q psy7711 12 YIVKVKWG-KETFEVDVDTDEEPMLFKAQLYEL---TGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGSKEE 84 (577)
Q Consensus 12 ~~i~vk~~-~~~~~~~v~~~~tv~~lk~~i~~~---~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs~~~ 84 (577)
|+|+||+. |+.+.++|++++||.+||++|++. +|+|+++|||+|+|+.|+|+ +|++|||++|++|+|+.++..
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~ 78 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 78 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCC
Confidence 78999994 788999999999999999999999 89999999999999999999 999999999999999998755
No 30
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.63 E-value=6.5e-16 Score=123.89 Aligned_cols=76 Identities=18% Similarity=0.152 Sum_probs=69.3
Q ss_pred CCceEEEEEEeC-CeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEecccc
Q psy7711 8 PPHTYIVKVKWG-KETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGSKE 83 (577)
Q Consensus 8 ~~~~~~i~vk~~-~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs~~ 83 (577)
|..+|+|+||+. |+.+.++|++++||.+||++|++.+|||+++|||+|+|+.|+|+ +|++|+|++|++|+|+....
T Consensus 1 m~~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~ 78 (88)
T 2hj8_A 1 MDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 78 (88)
T ss_dssp -CCEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC--
T ss_pred CCccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcC
Confidence 446799999984 68899999999999999999999999999999999999999999 99999999999999997753
No 31
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.62 E-value=9.9e-16 Score=123.79 Aligned_cols=72 Identities=15% Similarity=0.278 Sum_probs=68.0
Q ss_pred CceEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEec
Q psy7711 9 PHTYIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMG 80 (577)
Q Consensus 9 ~~~~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~g 80 (577)
+..|+|+||. .|+.+.|+|++++||.+||++|++.+|||+++|||+|+|+.|+|+ +|++|||++|++|+|+.
T Consensus 15 ~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~ 88 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 88 (91)
T ss_dssp CCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEEC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEE
Confidence 4479999995 678899999999999999999999999999999999999999999 99999999999999985
No 32
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.62 E-value=1.3e-15 Score=121.65 Aligned_cols=75 Identities=19% Similarity=0.378 Sum_probs=68.5
Q ss_pred ceEEEEEEeC-CeEEEEEeCCCCCHHHHHHHHHHH---hCCCCCCceEEecCCccCCc-cccccccCCCceEEEeccccC
Q psy7711 10 HTYIVKVKWG-KETFEVDVDTDEEPMLFKAQLYEL---TGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGSKEE 84 (577)
Q Consensus 10 ~~~~i~vk~~-~~~~~~~v~~~~tv~~lk~~i~~~---~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs~~~ 84 (577)
.+|+|+||+. |+.+.++|++++||.+||++|++. +|+|+++|||+|+|+.|+|+ +|++|||++|++|+|+.++..
T Consensus 4 ~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~~ 83 (85)
T 2wyq_A 4 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK 83 (85)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC---
T ss_pred ceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCCC
Confidence 3699999995 788999999999999999999998 89999999999999999999 999999999999999988754
No 33
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.61 E-value=1.2e-15 Score=122.59 Aligned_cols=71 Identities=20% Similarity=0.365 Sum_probs=66.5
Q ss_pred CCceEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEe
Q psy7711 8 PPHTYIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLM 79 (577)
Q Consensus 8 ~~~~~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~ 79 (577)
.+.+|+|+||+ .|+.+.++|++++||.+||++|++.+|+|+++|||+|+|+.|+|+ +|++||| +|++|+|+
T Consensus 14 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv 86 (88)
T 4eew_A 14 EPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLV 86 (88)
T ss_dssp -CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEE
T ss_pred CCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEE
Confidence 34679999999 478899999999999999999999999999999999999999999 9999999 89999997
No 34
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.61 E-value=1.8e-15 Score=122.11 Aligned_cols=75 Identities=19% Similarity=0.337 Sum_probs=69.8
Q ss_pred CceEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEeccccC
Q psy7711 9 PHTYIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGSKEE 84 (577)
Q Consensus 9 ~~~~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs~~~ 84 (577)
+++|+|+||+ .|+.+.|+|++++||.+||++|++.+|+|+++|||+|+|+.|+|+ +|++|+| +|++|+|+.....
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~ 79 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPP 79 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCC
Confidence 5689999999 468899999999999999999999999999999999999999999 9999999 8999999977543
No 35
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.61 E-value=1.6e-15 Score=124.57 Aligned_cols=76 Identities=22% Similarity=0.260 Sum_probs=71.0
Q ss_pred CCceEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEecccc
Q psy7711 8 PPHTYIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGSKE 83 (577)
Q Consensus 8 ~~~~~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs~~ 83 (577)
.+.+|+|+||+.|+.+.|+|++++||.+||++|++.+|+|+++|||+|+|+.|+|+ +|++|||++|++|+|+....
T Consensus 22 ~~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~ 98 (101)
T 2klc_A 22 HPKIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQ 98 (101)
T ss_dssp -CCCEEEEEECSSCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCS
T ss_pred CCCeEEEEEEeCCcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCC
Confidence 35679999999888899999999999999999999999999999999999999999 99999999999999998753
No 36
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.61 E-value=1.6e-15 Score=126.06 Aligned_cols=76 Identities=14% Similarity=0.271 Sum_probs=71.2
Q ss_pred CceEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEeccccC
Q psy7711 9 PHTYIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGSKEE 84 (577)
Q Consensus 9 ~~~~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs~~~ 84 (577)
...|+|+||+ .|+.+.++|++++||.+||.+|+..+|+|+++|||+|+|+.|+|+ +|++|||++|++|+|+.....
T Consensus 21 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~ 98 (106)
T 1ttn_A 21 GYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPV 98 (106)
T ss_dssp CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSS
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 3469999998 578899999999999999999999999999999999999999999 999999999999999998755
No 37
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.61 E-value=2e-15 Score=124.53 Aligned_cols=77 Identities=21% Similarity=0.324 Sum_probs=69.8
Q ss_pred CCceEEEEEEe--CC---eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc--cccccccCCCceEEEec
Q psy7711 8 PPHTYIVKVKW--GK---ETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND--EWDNFKLSNGSMVLLMG 80 (577)
Q Consensus 8 ~~~~~~i~vk~--~~---~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~--~l~~~~~~~~~~i~l~g 80 (577)
++.+|+|+|++ ++ +.+.|+|++++||.+||++|++++|||+++|||+|+|+.|+|+ +|++|+|++|++|+|+.
T Consensus 4 ~~~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~ 83 (102)
T 1v5o_A 4 GSSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQ 83 (102)
T ss_dssp CSCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECB
T ss_pred CCCeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEE
Confidence 34579999998 43 6899999999999999999999999999999999999999877 79999999999999998
Q ss_pred cccC
Q psy7711 81 SKEE 84 (577)
Q Consensus 81 s~~~ 84 (577)
....
T Consensus 84 ~~~g 87 (102)
T 1v5o_A 84 KDNV 87 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7644
No 38
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.61 E-value=1.2e-15 Score=122.37 Aligned_cols=70 Identities=20% Similarity=0.415 Sum_probs=66.4
Q ss_pred EEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEecc
Q psy7711 12 YIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGS 81 (577)
Q Consensus 12 ~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs 81 (577)
|+|+||. .|+.+.|+|++++||.+||++|++.+|+|+++|||+|+|+.|+|+ +|++|+|++|++|+|+..
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~r 72 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLA 72 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECB
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEE
Confidence 6899995 678899999999999999999999999999999999999999999 999999999999999954
No 39
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.60 E-value=2.5e-15 Score=122.78 Aligned_cols=77 Identities=18% Similarity=0.210 Sum_probs=71.9
Q ss_pred CCceEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEeccccC
Q psy7711 8 PPHTYIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGSKEE 84 (577)
Q Consensus 8 ~~~~~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs~~~ 84 (577)
++.+|+|+||+.++.+.++|++++||.+||++|++.+|||+++|||+|+|+.|+|+ +|++|+|++|++|+|+.....
T Consensus 14 ~~~~m~i~Vk~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~ 91 (96)
T 1wx8_A 14 SSRIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHS 91 (96)
T ss_dssp CSCEEEEEEECSSSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSS
T ss_pred CCCcEEEEEEECCeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCC
Confidence 45689999999888999999999999999999999999999999999999999999 999999999999999976543
No 40
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=3.1e-15 Score=118.25 Aligned_cols=73 Identities=19% Similarity=0.251 Sum_probs=68.6
Q ss_pred CceEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEecc
Q psy7711 9 PHTYIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGS 81 (577)
Q Consensus 9 ~~~~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs 81 (577)
+.+|+|+||. .|+.+.++|++++||.+||++|++.+|+|+++|||+|+|+.|+|+ +|++|||++|++|+|+..
T Consensus 5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 79 (81)
T 2dzi_A 5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVK 79 (81)
T ss_dssp SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEe
Confidence 4579999995 578899999999999999999999999999999999999999999 999999999999999975
No 41
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.59 E-value=2.3e-15 Score=123.34 Aligned_cols=76 Identities=20% Similarity=0.226 Sum_probs=70.5
Q ss_pred CceEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEeccccC
Q psy7711 9 PHTYIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGSKEE 84 (577)
Q Consensus 9 ~~~~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs~~~ 84 (577)
+.+|+|+||+.++++.|+|++++||.+||++|++.+|+|+++|||+|+|+.|+|+ +|++|||++|++|+|+.....
T Consensus 20 ~~~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~ 96 (100)
T 1yqb_A 20 PHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH 96 (100)
T ss_dssp TTEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCC
T ss_pred CCeEEEEEEcCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCC
Confidence 4579999999776689999999999999999999999999999999999999999 999999999999999977544
No 42
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.59 E-value=3.6e-15 Score=119.55 Aligned_cols=76 Identities=14% Similarity=0.206 Sum_probs=70.5
Q ss_pred CCCceEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEeccc
Q psy7711 7 KPPHTYIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGSK 82 (577)
Q Consensus 7 ~~~~~~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs~ 82 (577)
.++.+|+|+||+ .++.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ +|++|+|++|++|+|+...
T Consensus 3 ~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (87)
T 1wh3_A 3 SGSSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKK 80 (87)
T ss_dssp CCSSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECS
T ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEec
Confidence 346789999998 468899999999999999999999999999999999999999999 9999999999999999653
No 43
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.59 E-value=1.8e-15 Score=122.70 Aligned_cols=75 Identities=16% Similarity=0.138 Sum_probs=68.0
Q ss_pred CCceEEEEEEeCC-e--EEEEEeCCCCCHHHHHHHHHHHh--CCCCCCceEEecCCccCCc-ccccc--ccCCCceEEEe
Q psy7711 8 PPHTYIVKVKWGK-E--TFEVDVDTDEEPMLFKAQLYELT--GVQIDRQKVMCKGATLKND-EWDNF--KLSNGSMVLLM 79 (577)
Q Consensus 8 ~~~~~~i~vk~~~-~--~~~~~v~~~~tv~~lk~~i~~~~--~v~~~~qkl~~~g~~l~d~-~l~~~--~~~~~~~i~l~ 79 (577)
.+.+|+|+||+.+ + .+.|+|++++||.+||++|++++ |+|+++|||+|+|+.|+|+ +|++| +|++|++|||+
T Consensus 4 ~~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv 83 (93)
T 1wgd_A 4 GSSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLV 83 (93)
T ss_dssp CSCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEE
T ss_pred CCcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEE
Confidence 4567999999965 4 46778889999999999999999 9999999999999999999 99999 99999999999
Q ss_pred ccc
Q psy7711 80 GSK 82 (577)
Q Consensus 80 gs~ 82 (577)
...
T Consensus 84 ~~~ 86 (93)
T 1wgd_A 84 CNV 86 (93)
T ss_dssp CCC
T ss_pred eCC
Confidence 654
No 44
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.59 E-value=1.5e-15 Score=122.97 Aligned_cols=72 Identities=19% Similarity=0.257 Sum_probs=66.2
Q ss_pred CceEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEecc
Q psy7711 9 PHTYIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGS 81 (577)
Q Consensus 9 ~~~~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs 81 (577)
+.+|+|+||+ |+.+.++|++++||.+||++|++.+|+|+++|||+|+|+.|+|+ +|++|+|++|++|+|+..
T Consensus 17 ~~~m~I~Vk~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~r 89 (93)
T 2l7r_A 17 RGSMQLFVRA-QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGR 89 (93)
T ss_dssp ---CEEEEES-SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECC
T ss_pred CCcEEEEEEC-CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence 4579999999 78899999999999999999999999999999999999999999 999999999999999843
No 45
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.58 E-value=3.2e-15 Score=121.03 Aligned_cols=73 Identities=21% Similarity=0.345 Sum_probs=68.6
Q ss_pred ceEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc--cccccccCCCceEEEeccc
Q psy7711 10 HTYIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND--EWDNFKLSNGSMVLLMGSK 82 (577)
Q Consensus 10 ~~~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~--~l~~~~~~~~~~i~l~gs~ 82 (577)
..|+|+||+.+..+.|+|++++||.+||++|++.+|+|+++|||+|+|+.|+|+ +|++|||++|++|+|+...
T Consensus 14 ~~~~I~Vk~~~~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~ 88 (94)
T 2kan_A 14 RKIHVTVKFPSKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKS 88 (94)
T ss_dssp CCEEEEEECSSCEEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECC
T ss_pred CCEEEEEEcCCcEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeC
Confidence 469999999877899999999999999999999999999999999999999887 8999999999999999664
No 46
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.58 E-value=5.1e-15 Score=126.19 Aligned_cols=76 Identities=24% Similarity=0.255 Sum_probs=69.8
Q ss_pred CceEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEeccccC
Q psy7711 9 PHTYIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGSKEE 84 (577)
Q Consensus 9 ~~~~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs~~~ 84 (577)
+.+|+|+||+.++.+.|+|++++||.+||++|++.+|||+++|||+|+|+.|+|+ +|.+|+|++|++|+|+.....
T Consensus 30 ~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~g 106 (125)
T 1j8c_A 30 PKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDP 106 (125)
T ss_dssp CCCEEEEEECSSCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC---
T ss_pred CCcEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCC
Confidence 3579999999888899999999999999999999999999999999999999999 999999999999999987644
No 47
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.58 E-value=5e-15 Score=119.05 Aligned_cols=72 Identities=19% Similarity=0.391 Sum_probs=68.1
Q ss_pred CceEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEec
Q psy7711 9 PHTYIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMG 80 (577)
Q Consensus 9 ~~~~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~g 80 (577)
..+|+|+||+ .|+.+.|+|++++||.+||++|++.+|+|+++|||+|+|+.|+|+ +|++|+|++|++|+|+-
T Consensus 10 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~ 83 (88)
T 3dbh_I 10 GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVL 83 (88)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECC
T ss_pred CCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEE
Confidence 4479999996 678899999999999999999999999999999999999999999 99999999999999984
No 48
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.57 E-value=8.2e-15 Score=121.82 Aligned_cols=76 Identities=20% Similarity=0.226 Sum_probs=70.1
Q ss_pred CceEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEeccccC
Q psy7711 9 PHTYIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGSKEE 84 (577)
Q Consensus 9 ~~~~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs~~~ 84 (577)
..+|+|+||+.+.++.|+|++++||.+||++|++.+|||+++|||+|+|+.|+|+ +|.+|+|++|++|+|+.....
T Consensus 15 ~~~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~ 91 (106)
T 1wx7_A 15 PHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH 91 (106)
T ss_dssp SSEEEEEEECSSCEEEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCC
T ss_pred CceEEEEEEeCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 3579999999776689999999999999999999999999999999999999999 999999999999999976543
No 49
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.57 E-value=5.2e-15 Score=121.31 Aligned_cols=88 Identities=16% Similarity=0.243 Sum_probs=68.0
Q ss_pred EEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEeccccCCCCCC
Q psy7711 12 YIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGSKEEDSMKE 89 (577)
Q Consensus 12 ~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs~~~~~~~~ 89 (577)
|+|+||+ .|+.+.++|++++||.+||++|++.+|+|+++|||+|+|+.|+|+ +|++|||++|++|+|+.....
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~g----- 75 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG----- 75 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-----
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCC-----
Confidence 6899998 568899999999999999999999999999999999999999999 999999999999999976432
Q ss_pred ccccccccccchhhHhh
Q psy7711 90 PVVKPKFVEDMNESERA 106 (577)
Q Consensus 90 ~~~~~~~~ed~~~~~~~ 106 (577)
.+..|++.++.++.|
T Consensus 76 --G~~i~~~~v~~~~~~ 90 (98)
T 1yx5_B 76 --GRDPNSSSVDKLAAA 90 (98)
T ss_dssp --C--------------
T ss_pred --CCcCccccCCCchhh
Confidence 245677777766543
No 50
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.57 E-value=4.4e-15 Score=121.58 Aligned_cols=72 Identities=17% Similarity=0.310 Sum_probs=67.3
Q ss_pred ceEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEecc
Q psy7711 10 HTYIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGS 81 (577)
Q Consensus 10 ~~~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs 81 (577)
..|+|+||+ .|+.+.|+|++++||.+||++|++.+|||+++|||+|+|+.|+|+ +|++|+|++|++|+|+..
T Consensus 21 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~r 94 (98)
T 4hcn_B 21 RPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 94 (98)
T ss_dssp -CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECB
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence 369999995 678899999999999999999999999999999999999999999 999999999999999853
No 51
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=5.1e-15 Score=120.75 Aligned_cols=74 Identities=16% Similarity=0.130 Sum_probs=67.8
Q ss_pred eEEEEEE-e-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEeccccC
Q psy7711 11 TYIVKVK-W-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGSKEE 84 (577)
Q Consensus 11 ~~~i~vk-~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs~~~ 84 (577)
+++|+|+ . .+++++|+++++.||.+||++|+...++|+++|+|+|+||.|+|+ +|.+|||++|.+|+|+-....
T Consensus 15 ~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~ 91 (118)
T 2daf_A 15 LATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTN 91 (118)
T ss_dssp CEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESC
T ss_pred cEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCC
Confidence 5778877 3 468899999999999999999999999999999999999999999 999999999999999976544
No 52
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.56 E-value=7e-15 Score=114.61 Aligned_cols=70 Identities=20% Similarity=0.415 Sum_probs=66.1
Q ss_pred EEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEecc
Q psy7711 12 YIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGS 81 (577)
Q Consensus 12 ~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs 81 (577)
|+|+||+ .|+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ +|++|||++|++|+|+..
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~ 72 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLA 72 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence 6899998 568899999999999999999999999999999999999999999 999999999999999843
No 53
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.55 E-value=8.1e-15 Score=117.41 Aligned_cols=71 Identities=18% Similarity=0.353 Sum_probs=66.1
Q ss_pred eEEEEEE-eCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEecc
Q psy7711 11 TYIVKVK-WGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGS 81 (577)
Q Consensus 11 ~~~i~vk-~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs 81 (577)
-|+|.|| +.|+.+.++|++++||.+||++|++.+|+|+++|||+|+|+.|+|+ +|++|+|++|++|+|+..
T Consensus 9 ~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r 81 (88)
T 1sif_A 9 GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 81 (88)
T ss_dssp -CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-
T ss_pred ceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence 4899998 5779999999999999999999999999999999999999999999 999999999999999855
No 54
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.55 E-value=1e-14 Score=114.24 Aligned_cols=71 Identities=13% Similarity=0.211 Sum_probs=65.8
Q ss_pred eEEEEEEeC-CeE-EEEE-eCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEecc
Q psy7711 11 TYIVKVKWG-KET-FEVD-VDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGS 81 (577)
Q Consensus 11 ~~~i~vk~~-~~~-~~~~-v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs 81 (577)
.|+|+||+. |+. +.++ |++++||.+||++|++.+|+|+++|||+|+|+.|+|+ +|++|||++|++|+|+-.
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r 76 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVR 76 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEEC
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEe
Confidence 489999984 566 5899 9999999999999999999999999999999999999 999999999999999853
No 55
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.54 E-value=1.3e-14 Score=115.69 Aligned_cols=71 Identities=18% Similarity=0.323 Sum_probs=66.8
Q ss_pred ceEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEec
Q psy7711 10 HTYIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMG 80 (577)
Q Consensus 10 ~~~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~g 80 (577)
++|+|+||+ .++.+.|+|++++||.+||++|++.+++|+++|||+|+|+.|+|+ +|++|+|++|++|+|+-
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~ 74 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLL 74 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 469999998 468899999999999999999999999999999999999999999 99999999999999984
No 56
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.54 E-value=7.6e-15 Score=117.12 Aligned_cols=71 Identities=20% Similarity=0.315 Sum_probs=66.0
Q ss_pred ceEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEec
Q psy7711 10 HTYIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMG 80 (577)
Q Consensus 10 ~~~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~g 80 (577)
++|+|+||+ .++.+.|+|++++||.+||++|++.+++|+++|||+|+|+.|+|+ +|++|+|++|++|+|+.
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 74 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLL 74 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEE
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEE
Confidence 368999996 568899999999999999999999999999999999999999999 99999999999999984
No 57
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.54 E-value=1.5e-14 Score=112.78 Aligned_cols=70 Identities=19% Similarity=0.317 Sum_probs=66.1
Q ss_pred EEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEecc
Q psy7711 12 YIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGS 81 (577)
Q Consensus 12 ~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs 81 (577)
|+|+||+ .|+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ +|++|+|++|++|+|+..
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~ 72 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLR 72 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEEC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEe
Confidence 6899998 568899999999999999999999999999999999999999999 999999999999999854
No 58
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.53 E-value=2.4e-14 Score=115.21 Aligned_cols=74 Identities=15% Similarity=0.265 Sum_probs=68.2
Q ss_pred CceEEEEEEeC-C-eEEEE-EeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEeccc
Q psy7711 9 PHTYIVKVKWG-K-ETFEV-DVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGSK 82 (577)
Q Consensus 9 ~~~~~i~vk~~-~-~~~~~-~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs~ 82 (577)
..+|+|+||+. | +.+.| +|++++||.+||++|++.+|+|+++|||+|+|+.|+|+ +|.+|+|++|++|+|+-..
T Consensus 5 ~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 82 (89)
T 1wy8_A 5 SSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRP 82 (89)
T ss_dssp SSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECC
T ss_pred CCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeC
Confidence 45799999984 5 68999 59999999999999999999999999999999999999 9999999999999998553
No 59
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.52 E-value=2e-14 Score=117.49 Aligned_cols=70 Identities=19% Similarity=0.320 Sum_probs=66.6
Q ss_pred EEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEecc
Q psy7711 12 YIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGS 81 (577)
Q Consensus 12 ~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs 81 (577)
|+|+||+ .|+.+.|+|++++||.+||++|++.+|+|+++|||+|+|+.|+|+ +|++|+|++|++|+|+..
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r 73 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 73 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEE
Confidence 7899997 568899999999999999999999999999999999999999999 999999999999999954
No 60
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.52 E-value=1.7e-14 Score=120.64 Aligned_cols=72 Identities=18% Similarity=0.305 Sum_probs=67.8
Q ss_pred ceEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEecc
Q psy7711 10 HTYIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGS 81 (577)
Q Consensus 10 ~~~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs 81 (577)
..|+|+||+ .|+.+.|+|++++||.+||++|++.+|+|+++|||+|+|+.|+|+ +|++|+|++|++|+|+..
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~r 107 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 107 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEEC
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence 469999995 678999999999999999999999999999999999999999999 999999999999999853
No 61
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.52 E-value=1.6e-14 Score=120.13 Aligned_cols=76 Identities=16% Similarity=0.172 Sum_probs=68.3
Q ss_pred CceEEEEEEeCCe----EEEEEeCC---------CCCHHHHHHHHHHHh--CCCCCC-ceEEecCCccCCc-cccccccC
Q psy7711 9 PHTYIVKVKWGKE----TFEVDVDT---------DEEPMLFKAQLYELT--GVQIDR-QKVMCKGATLKND-EWDNFKLS 71 (577)
Q Consensus 9 ~~~~~i~vk~~~~----~~~~~v~~---------~~tv~~lk~~i~~~~--~v~~~~-qkl~~~g~~l~d~-~l~~~~~~ 71 (577)
+..|+|+|||.+. ++.|+|++ ++||.+||++|++.+ |+|+++ |||+|+|+.|+|+ +|++|+|+
T Consensus 10 ~~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~ 89 (107)
T 1x1m_A 10 LSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQ 89 (107)
T ss_dssp CCSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCC
T ss_pred CCceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCC
Confidence 4469999999765 88999554 599999999999999 999999 9999999999999 99999999
Q ss_pred CCceEEEeccccC
Q psy7711 72 NGSMVLLMGSKEE 84 (577)
Q Consensus 72 ~~~~i~l~gs~~~ 84 (577)
+|++|+|+.....
T Consensus 90 ~g~~i~lv~~~~~ 102 (107)
T 1x1m_A 90 PGSTVHVLRKSWS 102 (107)
T ss_dssp TTCEEEEEESSCC
T ss_pred CCCEEEEEeCCCC
Confidence 9999999987644
No 62
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.51 E-value=1.6e-14 Score=117.33 Aligned_cols=71 Identities=15% Similarity=0.183 Sum_probs=62.4
Q ss_pred CceEEEEEEeCC-e--EEEEEeCCCCCHHHHHHHHHHH-hCCCC-CCceEEecCCccCCc-ccccc--ccCCCceEEEe
Q psy7711 9 PHTYIVKVKWGK-E--TFEVDVDTDEEPMLFKAQLYEL-TGVQI-DRQKVMCKGATLKND-EWDNF--KLSNGSMVLLM 79 (577)
Q Consensus 9 ~~~~~i~vk~~~-~--~~~~~v~~~~tv~~lk~~i~~~-~~v~~-~~qkl~~~g~~l~d~-~l~~~--~~~~~~~i~l~ 79 (577)
+..|+|+||+.+ + .+.|+|++++||.+||++|++. .|+|| ++|||||+||.|+|+ +|++| +|++|++|+|+
T Consensus 21 ~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp --CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred CCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 456999999854 4 5789999999999999999996 56664 999999999999999 99999 99999999986
No 63
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.51 E-value=2.6e-14 Score=112.22 Aligned_cols=73 Identities=10% Similarity=0.163 Sum_probs=68.3
Q ss_pred CceEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEecc
Q psy7711 9 PHTYIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGS 81 (577)
Q Consensus 9 ~~~~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs 81 (577)
|+.|+|+||. .|+.+.++|++++||.+||++|++..|+|+++|+|+|.|+.|+|+ +|++|+|++|++|+|+..
T Consensus 1 m~~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~ 75 (79)
T 2uyz_B 1 MEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 75 (79)
T ss_dssp CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEEC
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEe
Confidence 4579999997 568899999999999999999999999999999999999999999 999999999999999854
No 64
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.51 E-value=2.5e-14 Score=118.39 Aligned_cols=72 Identities=11% Similarity=0.073 Sum_probs=67.4
Q ss_pred eEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccC-------CCceEEEeccc
Q psy7711 11 TYIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLS-------NGSMVLLMGSK 82 (577)
Q Consensus 11 ~~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~-------~~~~i~l~gs~ 82 (577)
.|.|+|++++.++.++|++++||.+||++|++++|||+++|||+|.|+.|+|+ +|++|||+ ++++|+|+...
T Consensus 2 ~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr~ 81 (118)
T 2fnj_B 2 DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRA 81 (118)
T ss_dssp EEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEBS
T ss_pred cEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEecC
Confidence 37788888888899999999999999999999999999999999999999999 99999999 79999998663
No 65
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.50 E-value=1.1e-14 Score=118.76 Aligned_cols=75 Identities=13% Similarity=0.166 Sum_probs=66.7
Q ss_pred CCceEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---------------CceEEecCCccCC-c-cccccc
Q psy7711 8 PPHTYIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQID---------------RQKVMCKGATLKN-D-EWDNFK 69 (577)
Q Consensus 8 ~~~~~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~---------------~qkl~~~g~~l~d-~-~l~~~~ 69 (577)
.+..|+|+||. .|++++|+|++++||.+||++|++.+++||+ +|+|+|.|+.|+| + +|++||
T Consensus 4 ~~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dyg 83 (105)
T 1v2y_A 4 GSSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYG 83 (105)
T ss_dssp CCCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHT
T ss_pred CCCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcC
Confidence 35579999986 5689999999999999999999999999985 4699999999974 4 999999
Q ss_pred cCCCceEEEeccc
Q psy7711 70 LSNGSMVLLMGSK 82 (577)
Q Consensus 70 ~~~~~~i~l~gs~ 82 (577)
|++|++|+||-.-
T Consensus 84 I~~g~~l~lv~~l 96 (105)
T 1v2y_A 84 IRNRDEVSFIKKL 96 (105)
T ss_dssp CCSSEEEEEEECS
T ss_pred CCCCCEEEEEehh
Confidence 9999999999553
No 66
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.24 E-value=2.1e-15 Score=117.55 Aligned_cols=70 Identities=29% Similarity=0.423 Sum_probs=65.7
Q ss_pred EEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEecc
Q psy7711 12 YIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGS 81 (577)
Q Consensus 12 ~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs 81 (577)
|+|+||+ .|+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ +|++|||++|++|+|+..
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~r 72 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQR 72 (76)
Confidence 6899998 467889999999999999999999999999999999999999999 999999999999999853
No 67
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.49 E-value=7.4e-14 Score=116.94 Aligned_cols=73 Identities=18% Similarity=0.290 Sum_probs=68.3
Q ss_pred CceEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEecc
Q psy7711 9 PHTYIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGS 81 (577)
Q Consensus 9 ~~~~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs 81 (577)
+.+|+|+||+ .|+.+.++|++++||.+||++|++.+|+|+++|||+|+|+.|+|+ +|++|+|++|++|+|+..
T Consensus 33 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~r 107 (111)
T 2ojr_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 107 (111)
T ss_dssp SSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEEC
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence 3579999998 468899999999999999999999999999999999999999999 999999999999999854
No 68
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.48 E-value=6.2e-14 Score=117.49 Aligned_cols=73 Identities=18% Similarity=0.279 Sum_probs=67.7
Q ss_pred CceEEEEEEeC----CeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEecc
Q psy7711 9 PHTYIVKVKWG----KETFEVDVDT-DEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGS 81 (577)
Q Consensus 9 ~~~~~i~vk~~----~~~~~~~v~~-~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs 81 (577)
+..|+|+|++. |+.+.++|++ ++||.+||++|++.+|||+++|||+|+|+.|+|+ +|++|+|++|++|+|+-.
T Consensus 25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r 103 (111)
T 1we6_A 25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLR 103 (111)
T ss_dssp CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECS
T ss_pred CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEE
Confidence 35699999984 5789999998 9999999999999999999999999999999999 999999999999999844
No 69
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.48 E-value=1.3e-13 Score=111.95 Aligned_cols=75 Identities=12% Similarity=0.106 Sum_probs=67.4
Q ss_pred CCceEEEEEEeCCe--EEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecC---Cc----cCCc-cccccccCCCceEE
Q psy7711 8 PPHTYIVKVKWGKE--TFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKG---AT----LKND-EWDNFKLSNGSMVL 77 (577)
Q Consensus 8 ~~~~~~i~vk~~~~--~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g---~~----l~d~-~l~~~~~~~~~~i~ 77 (577)
.|.+|+|+|++.+. .++++|++++||.+||++|+.++|+||++|||+|.| +. ++|+ +|++|||++|++|+
T Consensus 4 ~~~~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~ 83 (95)
T 1v6e_A 4 GSSGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIH 83 (95)
T ss_dssp CCCCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEE
T ss_pred CCcEEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEE
Confidence 45679999999876 689999999999999999999999999999999987 43 5788 99999999999999
Q ss_pred Eeccc
Q psy7711 78 LMGSK 82 (577)
Q Consensus 78 l~gs~ 82 (577)
|+.+.
T Consensus 84 v~d~~ 88 (95)
T 1v6e_A 84 VIDHS 88 (95)
T ss_dssp EBCCS
T ss_pred EEECC
Confidence 99764
No 70
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.46 E-value=2.1e-13 Score=112.21 Aligned_cols=70 Identities=13% Similarity=0.092 Sum_probs=66.2
Q ss_pred EEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCC-------CceEEEecc
Q psy7711 12 YIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSN-------GSMVLLMGS 81 (577)
Q Consensus 12 ~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~-------~~~i~l~gs 81 (577)
|=|.||+++.++.+++++++||.+||++|+...||||++|||+|.|+.|+|+ +|++|||++ +++|+|+-.
T Consensus 3 vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 3 VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp EEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred eEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 5578889999999999999999999999999999999999999999999999 999999999 999999844
No 71
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.46 E-value=1.2e-13 Score=111.23 Aligned_cols=73 Identities=25% Similarity=0.260 Sum_probs=64.3
Q ss_pred CCceEEEEEEeCCe---EEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEec--CC---cc-CCc-cccccccCCCceEE
Q psy7711 8 PPHTYIVKVKWGKE---TFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCK--GA---TL-KND-EWDNFKLSNGSMVL 77 (577)
Q Consensus 8 ~~~~~~i~vk~~~~---~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~--g~---~l-~d~-~l~~~~~~~~~~i~ 77 (577)
++..|+|.|++... .++++|++++||.+||++|+..+||||++|||+|. |+ .| +|+ +|++|+|++|++|+
T Consensus 12 ~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstih 91 (95)
T 2kjr_A 12 KSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLH 91 (95)
T ss_dssp CCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEE
T ss_pred CCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEE
Confidence 35679999998553 78999999999999999999999999999999998 44 34 777 99999999999999
Q ss_pred Eec
Q psy7711 78 LMG 80 (577)
Q Consensus 78 l~g 80 (577)
|+-
T Consensus 92 lvD 94 (95)
T 2kjr_A 92 VVD 94 (95)
T ss_dssp EEE
T ss_pred EEC
Confidence 973
No 72
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.46 E-value=1.2e-13 Score=125.75 Aligned_cols=75 Identities=17% Similarity=0.288 Sum_probs=69.5
Q ss_pred CCceEEEEEE-eCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEeccc
Q psy7711 8 PPHTYIVKVK-WGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGSK 82 (577)
Q Consensus 8 ~~~~~~i~vk-~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs~ 82 (577)
.+.+|+|+|| ++|+.+.|+|++++||.+||++|++.+|||+++|||+|+|+.|+|+ +|++|+|++|++|+|+...
T Consensus 17 ~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~ 93 (172)
T 3u30_A 17 RGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 93 (172)
T ss_dssp --CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECC
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecc
Confidence 3457999999 6789999999999999999999999999999999999999999999 9999999999999999654
No 73
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.45 E-value=2e-13 Score=110.67 Aligned_cols=69 Identities=16% Similarity=0.106 Sum_probs=63.6
Q ss_pred eEEEEEEeCC---eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-ccccccc-CCCceEEEe
Q psy7711 11 TYIVKVKWGK---ETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKL-SNGSMVLLM 79 (577)
Q Consensus 11 ~~~i~vk~~~---~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~-~~~~~i~l~ 79 (577)
.|+|+|+... ..+.|+|++++||.+||++|+++.|+||++|||++.|++++|+ +|.+||| ++|++++|+
T Consensus 24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~ 97 (105)
T 4dbg_A 24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLY 97 (105)
T ss_dssp EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEE
T ss_pred EEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEE
Confidence 3888888743 6789999999999999999999999999999999999988999 9999999 599999998
No 74
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.45 E-value=1.8e-13 Score=116.34 Aligned_cols=78 Identities=10% Similarity=0.138 Sum_probs=68.5
Q ss_pred CCCCceEEEEEEeCCe--EEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecC---Cc----cCCc-cccccccCCCce
Q psy7711 6 GKPPHTYIVKVKWGKE--TFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKG---AT----LKND-EWDNFKLSNGSM 75 (577)
Q Consensus 6 ~~~~~~~~i~vk~~~~--~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g---~~----l~d~-~l~~~~~~~~~~ 75 (577)
|+|+.+|+|+|++.+. .++++|+++.||.+||++|+..+||||++|||+|.| +. ++|+ +|++|||.+|++
T Consensus 1 ~~m~~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ 80 (122)
T 1t0y_A 1 GSMTEVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYR 80 (122)
T ss_dssp --CCCEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEE
T ss_pred CCCCCEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCE
Confidence 4677899999999876 689999999999999999999999999999999987 42 4677 999999999999
Q ss_pred EEEecccc
Q psy7711 76 VLLMGSKE 83 (577)
Q Consensus 76 i~l~gs~~ 83 (577)
|+|+.+..
T Consensus 81 ihvvd~~p 88 (122)
T 1t0y_A 81 IHAVDVTG 88 (122)
T ss_dssp EEEEECTT
T ss_pred EEEEeCCC
Confidence 99997653
No 75
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.45 E-value=2.7e-13 Score=110.37 Aligned_cols=73 Identities=11% Similarity=0.175 Sum_probs=67.0
Q ss_pred CceEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc--cccccccCCCceEEEeccccC
Q psy7711 9 PHTYIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND--EWDNFKLSNGSMVLLMGSKEE 84 (577)
Q Consensus 9 ~~~~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~--~l~~~~~~~~~~i~l~gs~~~ 84 (577)
+.+|+|+||+ .|+.+.++|++++||.+||++|+..+ +++|||+|+|+.|+|+ +|.+|+|++|++|+|+.....
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~ 80 (95)
T 1wia_A 5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG 80 (95)
T ss_dssp CCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCC
Confidence 4579999997 46889999999999999999999998 9999999999999887 899999999999999988654
No 76
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.45 E-value=3.1e-13 Score=112.37 Aligned_cols=75 Identities=12% Similarity=0.204 Sum_probs=65.9
Q ss_pred CceEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHH------HhCC--CCCCceEEecCCccCCc-cccccccCCC--ceE
Q psy7711 9 PHTYIVKVKW-GKETFEVDVDTDEEPMLFKAQLYE------LTGV--QIDRQKVMCKGATLKND-EWDNFKLSNG--SMV 76 (577)
Q Consensus 9 ~~~~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~------~~~v--~~~~qkl~~~g~~l~d~-~l~~~~~~~~--~~i 76 (577)
+..|.|+||. .|+++.|+|++++||.+||++|++ +.|+ |+++|||||.||+|+|+ +|++|+|+.| .+|
T Consensus 14 ~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tl 93 (116)
T 1wgh_A 14 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM 93 (116)
T ss_dssp SSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence 4579999996 678999999999999999999999 6675 69999999999999999 9999999877 567
Q ss_pred EEecccc
Q psy7711 77 LLMGSKE 83 (577)
Q Consensus 77 ~l~gs~~ 83 (577)
||+....
T Consensus 94 hLvlr~~ 100 (116)
T 1wgh_A 94 HLVARET 100 (116)
T ss_dssp EEEECSS
T ss_pred EEEccCC
Confidence 7775543
No 77
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.45 E-value=1.4e-13 Score=115.58 Aligned_cols=73 Identities=15% Similarity=0.300 Sum_probs=68.0
Q ss_pred eEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEecccc
Q psy7711 11 TYIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGSKE 83 (577)
Q Consensus 11 ~~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs~~ 83 (577)
.++|.||. .|+.+.++|++++||.+||++|++.+|+|+++|||+|+|+.|+|+ +|++|+|++|++|+|+....
T Consensus 9 ~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~ 83 (114)
T 2kdi_A 9 EFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLR 83 (114)
T ss_dssp CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCC
T ss_pred cEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcC
Confidence 47799985 678899999999999999999999999999999999999999999 99999999999999997653
No 78
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.45 E-value=1.3e-13 Score=112.42 Aligned_cols=73 Identities=10% Similarity=0.167 Sum_probs=68.2
Q ss_pred CceEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEecc
Q psy7711 9 PHTYIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGS 81 (577)
Q Consensus 9 ~~~~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs 81 (577)
+..|+|+||. .|+.+.++|.+++||.+||++|++..|+|+++|||+|.|+.|+|+ +|++|+|++|++|+|+-.
T Consensus 19 ~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~ 93 (97)
T 1wyw_B 19 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 93 (97)
T ss_dssp CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEES
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEe
Confidence 3469999997 568899999999999999999999999999999999999999999 999999999999999854
No 79
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.44 E-value=2e-13 Score=107.87 Aligned_cols=72 Identities=7% Similarity=0.086 Sum_probs=64.0
Q ss_pred eEEEEEEeC--C-eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEec-------CCccCCc-cccccccCCCceEEEe
Q psy7711 11 TYIVKVKWG--K-ETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCK-------GATLKND-EWDNFKLSNGSMVLLM 79 (577)
Q Consensus 11 ~~~i~vk~~--~-~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~-------g~~l~d~-~l~~~~~~~~~~i~l~ 79 (577)
+++|.|.++ + ..+++.++++.||.+||++|+..+|+||++|||+|. |++++|+ +|++|||++|++|||+
T Consensus 2 ~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlv 81 (86)
T 4b6w_A 2 VVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVV 81 (86)
T ss_dssp EEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEE
Confidence 578888874 3 557899999999999999999999999999999974 7889999 9999999999999999
Q ss_pred ccc
Q psy7711 80 GSK 82 (577)
Q Consensus 80 gs~ 82 (577)
-+.
T Consensus 82 d~~ 84 (86)
T 4b6w_A 82 DLQ 84 (86)
T ss_dssp ECC
T ss_pred eCC
Confidence 543
No 80
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.42 E-value=2.8e-13 Score=121.70 Aligned_cols=71 Identities=27% Similarity=0.357 Sum_probs=67.6
Q ss_pred EEEEEE-eCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEE-e-cCCccCCc-cccccccCCCceEEEeccc
Q psy7711 12 YIVKVK-WGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVM-C-KGATLKND-EWDNFKLSNGSMVLLMGSK 82 (577)
Q Consensus 12 ~~i~vk-~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~-~-~g~~l~d~-~l~~~~~~~~~~i~l~gs~ 82 (577)
|+|+|| ++|+.+.++|++++||.+||++|++.+|+||++|||+ | +|+.|+|+ +|++|+|++|++|+|+.+.
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~ 77 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDK 77 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECC
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccC
Confidence 889999 5779999999999999999999999999999999999 9 79999999 9999999999999999873
No 81
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.42 E-value=4.8e-13 Score=108.03 Aligned_cols=73 Identities=7% Similarity=0.104 Sum_probs=64.3
Q ss_pred ceEEEEEEeCC---eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCC---c----cCCc-cccccccCCCceEEE
Q psy7711 10 HTYIVKVKWGK---ETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGA---T----LKND-EWDNFKLSNGSMVLL 78 (577)
Q Consensus 10 ~~~~i~vk~~~---~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~---~----l~d~-~l~~~~~~~~~~i~l 78 (577)
..++|.|++.. ..++++|+++.||.+||++|+..+||||++|||+|.|+ . ++|+ +|++|+|++|++|+|
T Consensus 13 ~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihl 92 (97)
T 2kj6_A 13 DSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHI 92 (97)
T ss_dssp CCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEE
T ss_pred ceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEE
Confidence 46889999854 36899999999999999999999999999999999883 3 4777 999999999999999
Q ss_pred eccc
Q psy7711 79 MGSK 82 (577)
Q Consensus 79 ~gs~ 82 (577)
+.+.
T Consensus 93 vd~~ 96 (97)
T 2kj6_A 93 IDLD 96 (97)
T ss_dssp EECC
T ss_pred EeCC
Confidence 9753
No 82
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.42 E-value=3.6e-13 Score=121.27 Aligned_cols=70 Identities=17% Similarity=0.315 Sum_probs=66.4
Q ss_pred EEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEecc
Q psy7711 12 YIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGS 81 (577)
Q Consensus 12 ~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs 81 (577)
|+|+||. .|+.+.++|++++||.+||++|++.+|+|+++|||+|+|+.|+|+ +|++|+|++|++|+|+..
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlr 72 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEE
Confidence 6899998 568899999999999999999999999999999999999999999 999999999999999954
No 83
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.41 E-value=3.1e-13 Score=122.71 Aligned_cols=71 Identities=18% Similarity=0.292 Sum_probs=67.6
Q ss_pred eEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEecc
Q psy7711 11 TYIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGS 81 (577)
Q Consensus 11 ~~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs 81 (577)
.|+|+||+ .|+.+.|+|++++||.+||++|++.+|||+++|||+|+|+.|+|+ +|++|+|++|++|+|+..
T Consensus 105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~Lvlr 177 (189)
T 3q3f_A 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 177 (189)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCC
T ss_pred ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEE
Confidence 49999998 568899999999999999999999999999999999999999999 999999999999999965
No 84
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.41 E-value=4.1e-13 Score=113.13 Aligned_cols=72 Identities=17% Similarity=0.299 Sum_probs=66.2
Q ss_pred ceEEEEEEeC-----------CeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEE
Q psy7711 10 HTYIVKVKWG-----------KETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVL 77 (577)
Q Consensus 10 ~~~~i~vk~~-----------~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~ 77 (577)
..|+|+|+.. |+.+.|+|++++||.+||++|++.+|+|+++|||+|+|+.|+|+ +|++|+|++|++|+
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~ 103 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIH 103 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEE
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEE
Confidence 4688888864 46899999999999999999999999999999999999999999 99999999999999
Q ss_pred Eecc
Q psy7711 78 LMGS 81 (577)
Q Consensus 78 l~gs 81 (577)
|+-.
T Consensus 104 lv~r 107 (115)
T 1we7_A 104 LALK 107 (115)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 9843
No 85
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=6e-13 Score=105.83 Aligned_cols=70 Identities=14% Similarity=0.156 Sum_probs=62.1
Q ss_pred CceEEEEEEeCC-eE--EEE-EeCCCCCHHHHHHHHHHH-hCCCCCCceEEec--CCccCCc-cccccccCCCceEEE
Q psy7711 9 PHTYIVKVKWGK-ET--FEV-DVDTDEEPMLFKAQLYEL-TGVQIDRQKVMCK--GATLKND-EWDNFKLSNGSMVLL 78 (577)
Q Consensus 9 ~~~~~i~vk~~~-~~--~~~-~v~~~~tv~~lk~~i~~~-~~v~~~~qkl~~~--g~~l~d~-~l~~~~~~~~~~i~l 78 (577)
+.+|+|+||..+ ++ +.| +|++++||.+||++|++. .|+||+||||+|. |+.|+|+ +|++|+|++|++|++
T Consensus 8 ~~~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 8 MKHYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CCCEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred eEEEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 456999999753 44 368 999999999999999995 8999999999965 9999999 999999999999876
No 86
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.39 E-value=6.6e-13 Score=119.28 Aligned_cols=73 Identities=19% Similarity=0.176 Sum_probs=68.6
Q ss_pred CceEEEEEEeC-CeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEecc
Q psy7711 9 PHTYIVKVKWG-KETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGS 81 (577)
Q Consensus 9 ~~~~~i~vk~~-~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs 81 (577)
+..|+|+||+. |+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ +|++|+|++|++|+|+..
T Consensus 79 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~r 153 (159)
T 3rt3_B 79 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLR 153 (159)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEe
Confidence 45799999984 68899999999999999999999999999999999999999999 999999999999999954
No 87
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.39 E-value=3e-14 Score=122.52 Aligned_cols=71 Identities=17% Similarity=0.301 Sum_probs=0.0
Q ss_pred EEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEeccc
Q psy7711 12 YIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGSK 82 (577)
Q Consensus 12 ~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs~ 82 (577)
|+|+||+ .|+.+.|+|++++||.+||++|++.+||||++|+|+|+|+.|+|+ +|++|||++|++|+|+...
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl 73 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (128)
T ss_dssp -------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEc
Confidence 6799998 568899999999999999999999999999999999999999999 9999999999999999664
No 88
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.39 E-value=5.1e-13 Score=112.77 Aligned_cols=73 Identities=12% Similarity=0.194 Sum_probs=64.8
Q ss_pred ceEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHH------HhCCC--CCCceEEecCCccCCc-cccccccCCCc--eEE
Q psy7711 10 HTYIVKVKW-GKETFEVDVDTDEEPMLFKAQLYE------LTGVQ--IDRQKVMCKGATLKND-EWDNFKLSNGS--MVL 77 (577)
Q Consensus 10 ~~~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~------~~~v~--~~~qkl~~~g~~l~d~-~l~~~~~~~~~--~i~ 77 (577)
.+|.|+||. .|++++++|++++||.+||++|++ +.|+| +++|||||.||+|+|+ +|++|+|++|+ +||
T Consensus 16 ~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlh 95 (125)
T 2gow_A 16 DMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMH 95 (125)
T ss_dssp TCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEE
T ss_pred CeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEE
Confidence 359999996 568999999999999999999999 78884 9999999999999999 99999999887 567
Q ss_pred Eeccc
Q psy7711 78 LMGSK 82 (577)
Q Consensus 78 l~gs~ 82 (577)
|+...
T Consensus 96 lv~r~ 100 (125)
T 2gow_A 96 LVARE 100 (125)
T ss_dssp EEECS
T ss_pred EEecC
Confidence 76554
No 89
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.35 E-value=1.9e-12 Score=102.99 Aligned_cols=73 Identities=15% Similarity=0.297 Sum_probs=64.8
Q ss_pred EEEEEEeCCeEEEEE-eCCCCCHHHHHHHHHHHhCCCCCCceEEec--CCccC---Cc-cccccccCCCceEEEeccccC
Q psy7711 12 YIVKVKWGKETFEVD-VDTDEEPMLFKAQLYELTGVQIDRQKVMCK--GATLK---ND-EWDNFKLSNGSMVLLMGSKEE 84 (577)
Q Consensus 12 ~~i~vk~~~~~~~~~-v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~--g~~l~---d~-~l~~~~~~~~~~i~l~gs~~~ 84 (577)
|+|.|||.++.+.|+ |++++||.+||++|++.+|||+++|+|++. |+.|. |+ +|++|||++|++|+|..+...
T Consensus 1 m~i~vr~~~G~~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~~~~ 80 (86)
T 2kzr_A 1 WRVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEEDQTR 80 (86)
T ss_dssp CCEEEEETTEEEEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCCSCS
T ss_pred CEEEEEcCCCCEEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeCCCC
Confidence 679999988777788 999999999999999999999999999985 47774 56 999999999999999977544
No 90
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.35 E-value=7.1e-14 Score=122.71 Aligned_cols=69 Identities=17% Similarity=0.321 Sum_probs=0.0
Q ss_pred EEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEec
Q psy7711 12 YIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMG 80 (577)
Q Consensus 12 ~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~g 80 (577)
|+|+||+ .|+.+.|+|++++||.+||++|++.+|||+++|+|+|+|+.|+|+ +|++|+|++|++|+|+.
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvl 71 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71 (152)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEe
Confidence 6799998 468899999999999999999999999999999999999999999 99999999999999983
No 91
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.34 E-value=1.8e-12 Score=115.61 Aligned_cols=71 Identities=18% Similarity=0.305 Sum_probs=67.3
Q ss_pred EEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEeccc
Q psy7711 12 YIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGSK 82 (577)
Q Consensus 12 ~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs~ 82 (577)
|+|+||+ .|+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ +|++|||++|++|+|+...
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~ 73 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeec
Confidence 6899997 578899999999999999999999999999999999999999999 9999999999999999865
No 92
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.34 E-value=1.9e-12 Score=108.42 Aligned_cols=74 Identities=9% Similarity=0.120 Sum_probs=64.3
Q ss_pred CceEEEEEEeC-CeEE-EEEeCCCCCHHHHHHHHH-----HHhCCCC--CCceEEecCCccCCc-cccccccCCC-----
Q psy7711 9 PHTYIVKVKWG-KETF-EVDVDTDEEPMLFKAQLY-----ELTGVQI--DRQKVMCKGATLKND-EWDNFKLSNG----- 73 (577)
Q Consensus 9 ~~~~~i~vk~~-~~~~-~~~v~~~~tv~~lk~~i~-----~~~~v~~--~~qkl~~~g~~l~d~-~l~~~~~~~~----- 73 (577)
.+.|+|+||.. |+.+ .+++++++||.+||++|+ +..|+|+ ++|||||.||+|+|+ +|++|+|++|
T Consensus 14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~ 93 (126)
T 1se9_A 14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGA 93 (126)
T ss_dssp CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTC
T ss_pred cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCC
Confidence 45799999974 5677 799999999999999994 5678997 899999999999999 9999999999
Q ss_pred -ceEEEeccc
Q psy7711 74 -SMVLLMGSK 82 (577)
Q Consensus 74 -~~i~l~gs~ 82 (577)
.+|+|+-..
T Consensus 94 v~tmhlVlrl 103 (126)
T 1se9_A 94 VTTMHVIIQA 103 (126)
T ss_dssp CEEEEEEECC
T ss_pred cEEEEEEecc
Confidence 578887543
No 93
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.32 E-value=4e-12 Score=105.36 Aligned_cols=76 Identities=18% Similarity=0.216 Sum_probs=67.2
Q ss_pred CceEEEEEEeCCeEEEEEeC-CCCCHHHHHHHHHHHhCCCCCCceEEecCC-----------c----cCCc-cccccccC
Q psy7711 9 PHTYIVKVKWGKETFEVDVD-TDEEPMLFKAQLYELTGVQIDRQKVMCKGA-----------T----LKND-EWDNFKLS 71 (577)
Q Consensus 9 ~~~~~i~vk~~~~~~~~~v~-~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~-----------~----l~d~-~l~~~~~~ 71 (577)
+..|.|.||+.+.++.|+|+ +++||.+||++|++.+|||+++|+|++.|+ . ++|+ +|++|||+
T Consensus 5 ~~~M~irvrs~~G~~~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~ 84 (107)
T 1wf9_A 5 SSGTMLRVRSRDGLERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLA 84 (107)
T ss_dssp CCCEEEEEECSSCEEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCC
T ss_pred CCeEEEEEECCCCCEEEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCC
Confidence 34589999987767789999 999999999999999999999999998887 4 4677 99999999
Q ss_pred CCceEEEeccccC
Q psy7711 72 NGSMVLLMGSKEE 84 (577)
Q Consensus 72 ~~~~i~l~gs~~~ 84 (577)
+|++|+|+-..+.
T Consensus 85 ~G~~L~l~~~~~~ 97 (107)
T 1wf9_A 85 HGSMVYLAYEGER 97 (107)
T ss_dssp TTCEEECCCSSCC
T ss_pred CCCEEEEEeCCCC
Confidence 9999999977655
No 94
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.32 E-value=1.8e-12 Score=130.36 Aligned_cols=73 Identities=19% Similarity=0.391 Sum_probs=67.0
Q ss_pred ceEEEEEEeC-CeEEEEEeCCCCCHHHHHHHHHH---HhCCCCCCceEEecCCccCCc-cccccccCCCceEEEeccc
Q psy7711 10 HTYIVKVKWG-KETFEVDVDTDEEPMLFKAQLYE---LTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGSK 82 (577)
Q Consensus 10 ~~~~i~vk~~-~~~~~~~v~~~~tv~~lk~~i~~---~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs~ 82 (577)
.+|+|+||+. |++|.|+|++++||.+||++|+. ++|||+++|||+|+||.|+|+ +|++|+|++|++|++|.++
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k 83 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 83 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEEC
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEec
Confidence 3689999995 78899999999999999999999 678999999999999999999 9999999999999776554
No 95
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.30 E-value=4.4e-12 Score=123.65 Aligned_cols=72 Identities=18% Similarity=0.313 Sum_probs=67.9
Q ss_pred CceEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEec
Q psy7711 9 PHTYIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMG 80 (577)
Q Consensus 9 ~~~~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~g 80 (577)
..+|+|+||+ .|+.+.|+|++++||.+||++|++++|||+++|||+|+|+.|+|+ +|++|+|++|++|+|+.
T Consensus 231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~Lvl 304 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 304 (307)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEE
Confidence 4579999998 468899999999999999999999999999999999999999999 99999999999999984
No 96
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.28 E-value=9.5e-12 Score=110.83 Aligned_cols=73 Identities=18% Similarity=0.291 Sum_probs=67.9
Q ss_pred CceEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEecc
Q psy7711 9 PHTYIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGS 81 (577)
Q Consensus 9 ~~~~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs 81 (577)
+..|+|+||+ .|+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ +|++|+|++|++|+|+..
T Consensus 74 ~~~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r 148 (152)
T 3b08_A 74 RGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 148 (152)
T ss_dssp TTCEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred ccccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEe
Confidence 3458999996 568899999999999999999999999999999999999999999 999999999999999854
No 97
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.26 E-value=1e-11 Score=112.95 Aligned_cols=71 Identities=18% Similarity=0.317 Sum_probs=66.6
Q ss_pred ceEEEEEE-eCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEec
Q psy7711 10 HTYIVKVK-WGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMG 80 (577)
Q Consensus 10 ~~~~i~vk-~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~g 80 (577)
..|.|.|| +.|+.+.++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+ +|.+|+|++|++|+|+.
T Consensus 95 gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~ 167 (172)
T 3u30_A 95 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 167 (172)
T ss_dssp CCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC
T ss_pred ccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEE
Confidence 35889998 4678899999999999999999999999999999999999999999 99999999999999984
No 98
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.05 E-value=1.8e-11 Score=110.13 Aligned_cols=63 Identities=21% Similarity=0.167 Sum_probs=0.0
Q ss_pred EEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEe
Q psy7711 12 YIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLM 79 (577)
Q Consensus 12 ~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~ 79 (577)
|+|+||. .|+++.|+|++++||.+||++|++.+|||+++|+|+|.|+.|+|+ +|+ +|++|+|+
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLv 65 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLS 65 (189)
T ss_dssp ----------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEE
Confidence 6799997 468899999999999999999999999999999999999999999 988 99999998
No 99
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.97 E-value=2.4e-09 Score=87.02 Aligned_cols=75 Identities=19% Similarity=0.238 Sum_probs=62.8
Q ss_pred CCceEEEEEEeC----CeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecC------Cc-cCCc--cccccccCCCc
Q psy7711 8 PPHTYIVKVKWG----KETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKG------AT-LKND--EWDNFKLSNGS 74 (577)
Q Consensus 8 ~~~~~~i~vk~~----~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g------~~-l~d~--~l~~~~~~~~~ 74 (577)
...+++|+|++. +..+++.++++.||.+||.+|+..||+|+.+|||.|.+ .. |.|| +|+.|+|.+|+
T Consensus 6 ~~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~ 85 (97)
T 1wjn_A 6 SGQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGD 85 (97)
T ss_dssp SSCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTC
T ss_pred cCccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCC
Confidence 345688888863 46789999999999999999999999999999999863 12 5444 89999999999
Q ss_pred eEEEeccc
Q psy7711 75 MVLLMGSK 82 (577)
Q Consensus 75 ~i~l~gs~ 82 (577)
+|+|.-+.
T Consensus 86 ~I~V~d~~ 93 (97)
T 1wjn_A 86 CLLVRWSG 93 (97)
T ss_dssp EEEEECCS
T ss_pred EEEEEecC
Confidence 99998643
No 100
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=98.91 E-value=5.1e-09 Score=81.25 Aligned_cols=74 Identities=15% Similarity=0.261 Sum_probs=67.6
Q ss_pred CCCceEEEEEEe-CC-eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEec
Q psy7711 7 KPPHTYIVKVKW-GK-ETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMG 80 (577)
Q Consensus 7 ~~~~~~~i~vk~-~~-~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~g 80 (577)
.....|+|+|+. .| +.+.+.|.+++++..|+.+.++..|+++++||++|.|+.|.++ +..++++.+|++|.++|
T Consensus 3 ~~~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~~ 79 (79)
T 3a4r_A 3 LGSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVWG 79 (79)
T ss_dssp TCCCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEEC
T ss_pred CCCCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEeC
Confidence 344569999997 45 3789999999999999999999999999999999999999999 99999999999999986
No 101
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=98.88 E-value=5e-09 Score=84.02 Aligned_cols=73 Identities=7% Similarity=0.122 Sum_probs=67.0
Q ss_pred CceEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEecc
Q psy7711 9 PHTYIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGS 81 (577)
Q Consensus 9 ~~~~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs 81 (577)
...|+|+||. .|+.+.+.|.+++++..|+.+++++.|+|+++|||+|.|+.|.++ ++.++++.+|++|.|+-.
T Consensus 5 ~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~ 79 (94)
T 2io1_B 5 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ 79 (94)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEEC
T ss_pred CCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEe
Confidence 3469999997 567789999999999999999999999999999999999999999 999999999999999844
No 102
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=98.83 E-value=1.2e-08 Score=77.65 Aligned_cols=68 Identities=7% Similarity=0.139 Sum_probs=64.1
Q ss_pred EEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEe
Q psy7711 12 YIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLM 79 (577)
Q Consensus 12 ~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~ 79 (577)
|+|+|+. .|+.+.+.|.+++++..|+.+.++..|+|+++|+++|.|+.|.++ +..++++.+|++|.++
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 7899996 567789999999999999999999999999999999999999999 9999999999999986
No 103
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=98.82 E-value=1.8e-09 Score=112.38 Aligned_cols=73 Identities=53% Similarity=0.916 Sum_probs=50.6
Q ss_pred cchhhHhhhcCCCCcccccCCCCcchhhHHHhhcCCHHHHHHHHhhhCC--CCCCCCchhHHHHHHHHHhhhccc
Q psy7711 99 DMNESERAVSLDLPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGG--LQPGSNPAQSITASLRDLYECMDN 171 (577)
Q Consensus 99 d~~~~~~~~~~~~~~gl~n~g~~cy~ns~~q~l~~~p~l~~~~~~~~~~--~~~~~~p~~~~~~~l~~l~~~~~~ 171 (577)
||+++|+++....++||.|+||||||||+||||+++|+|++++..+... .+....+...+...++.++..++.
T Consensus 1 d~~~~~~~~~~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~ 75 (404)
T 2ayn_A 1 DMTEEQLASAMELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDK 75 (404)
T ss_dssp ----------CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHhccCCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCCCCcccHHHHHHHHHHHHHhc
Confidence 6888888888899999999999999999999999999999999876654 111223467788888888877764
No 104
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=98.79 E-value=1.9e-08 Score=79.97 Aligned_cols=72 Identities=7% Similarity=0.128 Sum_probs=66.8
Q ss_pred ceEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEecc
Q psy7711 10 HTYIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGS 81 (577)
Q Consensus 10 ~~~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs 81 (577)
+.|+|+|+. .|+.+.+.|.+++++..|+.++++..|+|+++||++|.|+.|.++ |..++++.+|++|.++-.
T Consensus 4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~ 77 (91)
T 2io0_B 4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ 77 (91)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEe
Confidence 468999997 567789999999999999999999999999999999999999999 999999999999999854
No 105
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.74 E-value=4.4e-08 Score=79.83 Aligned_cols=73 Identities=7% Similarity=0.122 Sum_probs=67.1
Q ss_pred CceEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEecc
Q psy7711 9 PHTYIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGS 81 (577)
Q Consensus 9 ~~~~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs 81 (577)
...|+|+|+. .|+.+.+.|.+++++..|+.++++..|+++++|||+|.|+.|.++ +..+|++.+|++|.++-.
T Consensus 22 ~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~ 96 (104)
T 1wz0_A 22 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ 96 (104)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCC
T ss_pred CCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEe
Confidence 3569999997 557789999999999999999999999999999999999999999 999999999999999843
No 106
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=98.71 E-value=4.7e-08 Score=78.23 Aligned_cols=73 Identities=7% Similarity=0.122 Sum_probs=66.8
Q ss_pred CceEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEecc
Q psy7711 9 PHTYIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGS 81 (577)
Q Consensus 9 ~~~~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs 81 (577)
...|+|+|+. .|+.+.+.|.+++++..|+.++++..|+++++|+|+|.|+.|.++ +..+|++.+|++|.++-.
T Consensus 15 ~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~ 89 (93)
T 2d07_B 15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ 89 (93)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred CCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEee
Confidence 4579999997 457788999999999999999999999999999999999999999 999999999999999843
No 107
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=98.66 E-value=1.3e-08 Score=100.60 Aligned_cols=63 Identities=11% Similarity=0.192 Sum_probs=49.7
Q ss_pred cCCCCcccccCCCCcchhhHHHhhcCCHHHHHHHHhhhCCCCCCCCchhHHHHHH-HHHhhhccc
Q psy7711 108 SLDLPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASL-RDLYECMDN 171 (577)
Q Consensus 108 ~~~~~~gl~n~g~~cy~ns~~q~l~~~p~l~~~~~~~~~~~~~~~~p~~~~~~~l-~~l~~~~~~ 171 (577)
....|+||.|+||||||||++|||+++|++.+.+..+...... ......+...+ ++++..|+.
T Consensus 5 ~~g~p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~~~~~~~-~~~~~~l~~~L~r~i~~~Lrk 68 (374)
T 2vhf_A 5 MIGKKKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKND-VEYYSETQELLRTEIVNPLRI 68 (374)
T ss_dssp TSEESCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHCCCCTTS-CTTHHHHHHHHHHTTHHHHHH
T ss_pred hcCCCccccCCCcCcHHHHHHHHHHhchHHHHHHHhCCCCCCc-chhHHHHHHHHHHHHHHHHhh
Confidence 4568999999999999999999999999999999988654333 22334577677 788877663
No 108
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=98.65 E-value=6.3e-08 Score=79.53 Aligned_cols=73 Identities=8% Similarity=0.123 Sum_probs=67.3
Q ss_pred ceEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEeccc
Q psy7711 10 HTYIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGSK 82 (577)
Q Consensus 10 ~~~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs~ 82 (577)
..|+|+|+. .|+.+.+.|.+++++..|+.++++..|+++++|||+|.|+.|.++ |..+|++.+|++|.++-..
T Consensus 25 ~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q 99 (110)
T 2k8h_A 25 ALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQ 99 (110)
T ss_dssp CCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCC
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcc
Confidence 459999997 457789999999999999999999999999999999999999999 9999999999999998554
No 109
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=98.65 E-value=8.2e-08 Score=78.21 Aligned_cols=72 Identities=10% Similarity=0.185 Sum_probs=66.3
Q ss_pred ceEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEecc
Q psy7711 10 HTYIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGS 81 (577)
Q Consensus 10 ~~~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs 81 (577)
..|+|+|+..|+.+.+.|..++++..|+.++++..|+++++||++|.|+.|.++ |..+|++.+|++|.++-.
T Consensus 30 ~~I~IkV~~~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~ 102 (106)
T 2eke_C 30 THINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE 102 (106)
T ss_dssp SEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred CeEEEEEecCCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEee
Confidence 358999988567788999999999999999999999999999999999999999 999999999999999743
No 110
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.58 E-value=5.6e-08 Score=75.33 Aligned_cols=70 Identities=14% Similarity=0.245 Sum_probs=59.2
Q ss_pred ceEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCC---cc--CCc-cccccccCCCceEEEe
Q psy7711 10 HTYIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGA---TL--KND-EWDNFKLSNGSMVLLM 79 (577)
Q Consensus 10 ~~~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~---~l--~d~-~l~~~~~~~~~~i~l~ 79 (577)
..|.|.|++..+.+.|+|++++|+.+|+.+|++.++++++.|.|.+.-. .| .++ +|+++||+.|++|+|.
T Consensus 3 ~~m~lRvrs~~G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 3 ESIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCCEEECSSEEEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred CcEEEEEECCCCCEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 3588999999999999999999999999999999999999998865322 23 255 8999999999999874
No 111
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=98.40 E-value=1.3e-07 Score=98.50 Aligned_cols=66 Identities=30% Similarity=0.542 Sum_probs=51.2
Q ss_pred hhcCCCCcccccCCCCcchhhHHHhhcCCHHHHHHHHhhhCCCCCCCC------chhHHHHHHHHHhhhccc
Q psy7711 106 AVSLDLPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSN------PAQSITASLRDLYECMDN 171 (577)
Q Consensus 106 ~~~~~~~~gl~n~g~~cy~ns~~q~l~~~p~l~~~~~~~~~~~~~~~~------p~~~~~~~l~~l~~~~~~ 171 (577)
+.....|+||.|+||||||||+||||+.+|+|++++..+......... +..++...++.++..++.
T Consensus 18 ~~~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~ 89 (415)
T 1vjv_A 18 QQFAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQN 89 (415)
T ss_dssp -CCCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCCCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCcccccccchhHHHHHHHHHHHHHhc
Confidence 345568999999999999999999999999999999876543221111 256788888998887764
No 112
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=98.34 E-value=6.1e-07 Score=91.24 Aligned_cols=59 Identities=29% Similarity=0.451 Sum_probs=43.6
Q ss_pred CCCcccccCCCCcchhhHHHhhcCCHHHHHHHHhhhCCCCCCCCchhHHHHHHHHHhhhccc
Q psy7711 110 DLPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDN 171 (577)
Q Consensus 110 ~~~~gl~n~g~~cy~ns~~q~l~~~p~l~~~~~~~~~~~~~~~~p~~~~~~~l~~l~~~~~~ 171 (577)
.-++||.|+||||||||+||||+.+|+|++++....... ..+..++...++.++..+..
T Consensus 4 ~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~~---~~~~~~~~~~l~~lf~~l~~ 62 (353)
T 1nb8_A 4 TGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG---DDSSKSVPLALQRVFYELQH 62 (353)
T ss_dssp SSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCTT---SCTTTCHHHHHHHHHHHHHH
T ss_pred CCCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCCC---CcccccHHHHHHHHHHHHhh
Confidence 357899999999999999999999999999986543211 12334566667777665553
No 113
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=98.28 E-value=7.1e-07 Score=90.46 Aligned_cols=63 Identities=35% Similarity=0.553 Sum_probs=49.2
Q ss_pred CCCCcccccCCCCcchhhHHHhhcCCHHHHHHHHhh--hCCCCCCCCchhHHHHHHHHHhhhccc
Q psy7711 109 LDLPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNL--KGGLQPGSNPAQSITASLRDLYECMDN 171 (577)
Q Consensus 109 ~~~~~gl~n~g~~cy~ns~~q~l~~~p~l~~~~~~~--~~~~~~~~~p~~~~~~~l~~l~~~~~~ 171 (577)
..-.+||.|+||||||||+||||+.+|+|++++... .........+...+...++.+...++.
T Consensus 6 ~~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~ 70 (348)
T 3nhe_A 6 AQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWT 70 (348)
T ss_dssp CCSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSSCCTTHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhccCCCcccHHHHHHHHHHHHHHc
Confidence 346799999999999999999999999999988653 223333344567788888888877764
No 114
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=98.19 E-value=8e-07 Score=90.36 Aligned_cols=61 Identities=36% Similarity=0.554 Sum_probs=43.3
Q ss_pred CcccccCCCCcchhhHHHhhcCCHHHHHHHHhhhCC-CCCCCCchhHHHHHHHHHhhhcccC
Q psy7711 112 PAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGG-LQPGSNPAQSITASLRDLYECMDNM 172 (577)
Q Consensus 112 ~~gl~n~g~~cy~ns~~q~l~~~p~l~~~~~~~~~~-~~~~~~p~~~~~~~l~~l~~~~~~~ 172 (577)
-+||.|+||||||||+||||+++|+|++++...... ..+.......+...++.+...++..
T Consensus 3 ~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~ 64 (355)
T 3i3t_A 3 HVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWHP 64 (355)
T ss_dssp CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC------CHHHHHHHHHHHHTSSC
T ss_pred CcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcCCCCchhHHHHHHHHHHHHHhcC
Confidence 479999999999999999999999999998653210 1112233456777888888777654
No 115
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=98.19 E-value=1.2e-06 Score=89.49 Aligned_cols=63 Identities=27% Similarity=0.392 Sum_probs=45.8
Q ss_pred CCCcccccCCCCcchhhHHHhhcCCHHHHHHHHhhh--CCCCC--CCCchhHHHHHHHHHhhhcccC
Q psy7711 110 DLPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLK--GGLQP--GSNPAQSITASLRDLYECMDNM 172 (577)
Q Consensus 110 ~~~~gl~n~g~~cy~ns~~q~l~~~p~l~~~~~~~~--~~~~~--~~~p~~~~~~~l~~l~~~~~~~ 172 (577)
+-.+||.|+||||||||+||||+++|+|++++.... ...+. .......+...++.+...++..
T Consensus 6 ~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~ 72 (367)
T 2y6e_A 6 PGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSG 72 (367)
T ss_dssp TTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSS
T ss_pred CCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcC
Confidence 457899999999999999999999999999987532 11111 1112346777788887777643
No 116
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.18 E-value=4.4e-06 Score=65.73 Aligned_cols=70 Identities=13% Similarity=0.258 Sum_probs=52.2
Q ss_pred EEEEEe--CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-ccc--cc-ccCCCceEEEeccc
Q psy7711 13 IVKVKW--GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWD--NF-KLSNGSMVLLMGSK 82 (577)
Q Consensus 13 ~i~vk~--~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~--~~-~~~~~~~i~l~gs~ 82 (577)
-|+|=. ....+.|.|.+++|+..||++|++.|||||++|+|+|.|+.+.=+ ... .+ .-.+...|+|+...
T Consensus 14 vvHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s~~ 89 (94)
T 4efo_A 14 VIHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVSLE 89 (94)
T ss_dssp EEEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEECC
T ss_pred eEEEEEcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEecC
Confidence 344543 457789999999999999999999999999999999999766533 332 33 33444667666543
No 117
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.13 E-value=9.3e-06 Score=66.65 Aligned_cols=71 Identities=10% Similarity=0.173 Sum_probs=65.0
Q ss_pred ceEEEEEEeC-CeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEec
Q psy7711 10 HTYIVKVKWG-KETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMG 80 (577)
Q Consensus 10 ~~~~i~vk~~-~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~g 80 (577)
+-|+|+|+.. |....+.|..++++..|+.+.++..|+++..+|++|.|..|.++ |..++++.+|++|.++-
T Consensus 39 ~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~ 111 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQ 111 (115)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEE
T ss_pred CeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 4588999874 56678999999999999999999999999999999999999988 99999999999999874
No 118
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=98.10 E-value=3.7e-06 Score=90.15 Aligned_cols=59 Identities=29% Similarity=0.451 Sum_probs=41.7
Q ss_pred CCCcccccCCCCcchhhHHHhhcCCHHHHHHHHhhhCCCCCCCCchhHHHHHHHHHhhhccc
Q psy7711 110 DLPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDN 171 (577)
Q Consensus 110 ~~~~gl~n~g~~cy~ns~~q~l~~~p~l~~~~~~~~~~~~~~~~p~~~~~~~l~~l~~~~~~ 171 (577)
.-++||.|+||||||||+||||+.+|+|++++....... ..+..++...++.+...+..
T Consensus 173 ~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~~---~~~~~~~~~~l~~lf~~l~~ 231 (522)
T 2f1z_A 173 TGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG---DDSSKSVPLALQRVFYELQH 231 (522)
T ss_dssp TSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCCS---SCTTTCHHHHHHHHHHHHHH
T ss_pred CCccceecCcccHHHHHHHHHHhccHHHHHHHhhccccC---CcccchHHHHHHHHHHHHhc
Confidence 357899999999999999999999999999886543211 12334566667777665553
No 119
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.06 E-value=1e-05 Score=73.47 Aligned_cols=71 Identities=10% Similarity=0.189 Sum_probs=66.5
Q ss_pred CceEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEe
Q psy7711 9 PHTYIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLM 79 (577)
Q Consensus 9 ~~~~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~ 79 (577)
..-|+|+|+..|+...+.|..++++..|+.+.+++.|+++.++|++|.|+.|.++ |..++++.+|++|.++
T Consensus 27 ~~~I~LkV~~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~ 98 (200)
T 3pge_A 27 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAH 98 (200)
T ss_dssp CCCEEEEEECSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred CCeEEEEEecCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 3458999987778889999999999999999999999999999999999999999 9999999999999998
No 120
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.06 E-value=8.6e-06 Score=72.03 Aligned_cols=71 Identities=10% Similarity=0.178 Sum_probs=66.1
Q ss_pred CceEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEe
Q psy7711 9 PHTYIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLM 79 (577)
Q Consensus 9 ~~~~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~ 79 (577)
.+-|+|+|+..|..+.+.|..++++..|+.+.+++.|+++..++++|.|..|.++ |..++++.+|++|.++
T Consensus 55 ~e~InLKVk~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~ 126 (207)
T 3tix_A 55 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAH 126 (207)
T ss_dssp CCEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEEC
T ss_pred CCcEEEEEecCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEE
Confidence 3458888887778889999999999999999999999999999999999999988 9999999999999988
No 121
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=98.02 E-value=1.8e-06 Score=89.16 Aligned_cols=34 Identities=47% Similarity=0.894 Sum_probs=31.4
Q ss_pred CCCcccccCCCCcchhhHHHhhcCCHHHHHHHHh
Q psy7711 110 DLPAGLNNLGNTCYMNAVIQCLKTVPELRKALKN 143 (577)
Q Consensus 110 ~~~~gl~n~g~~cy~ns~~q~l~~~p~l~~~~~~ 143 (577)
...+||.|+||||||||+||||+.+|+|++++..
T Consensus 60 ~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~ 93 (396)
T 2gfo_A 60 PALTGLRNLGNTCYMNSILQCLCNAPHLADYFNR 93 (396)
T ss_dssp TTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHT
T ss_pred CCcccccccCCchhHhHHHHHhhCCHHHHHHHHc
Confidence 3578999999999999999999999999999865
No 122
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=97.91 E-value=3.9e-06 Score=88.90 Aligned_cols=61 Identities=21% Similarity=0.375 Sum_probs=44.2
Q ss_pred CCcccccCCCCcchhhHHHhhcCCHHHHHHHHhhhCC-CCCCCCchhHHHHHHHHHhhhccc
Q psy7711 111 LPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGG-LQPGSNPAQSITASLRDLYECMDN 171 (577)
Q Consensus 111 ~~~gl~n~g~~cy~ns~~q~l~~~p~l~~~~~~~~~~-~~~~~~p~~~~~~~l~~l~~~~~~ 171 (577)
-.+||.|+||||||||+||||+.+|+|++++...... .....+|..++...+..+...+..
T Consensus 140 G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~ 201 (476)
T 3mhs_A 140 GLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYG 201 (476)
T ss_dssp CCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSCCTTTCHHHHHHHHHHHHHS
T ss_pred CCCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhhhccCCCcccchHHHHHHHHHHHhh
Confidence 5689999999999999999999999999988643221 112234555666666666655543
No 123
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=97.88 E-value=3.8e-06 Score=94.49 Aligned_cols=63 Identities=24% Similarity=0.491 Sum_probs=48.5
Q ss_pred CCcccccCCCCcchhhHHHhhcCCHHHHHHHHhhhCCC--CCCCCchhHHHHHHHHHhhhcccCC
Q psy7711 111 LPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGL--QPGSNPAQSITASLRDLYECMDNMK 173 (577)
Q Consensus 111 ~~~gl~n~g~~cy~ns~~q~l~~~p~l~~~~~~~~~~~--~~~~~p~~~~~~~l~~l~~~~~~~~ 173 (577)
-.+||.|+||||||||+||||+.+|+|++++....... .....+..++...++.+...++...
T Consensus 343 G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~l~~~l~~L~~~L~s~~ 407 (854)
T 3ihp_A 343 GYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGE 407 (854)
T ss_dssp TCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHHHHHHHCCSCGGGCHHHHHHHHHHHHHSCC
T ss_pred CccceEecCCceehhHHHHHHhCcHHHHHHHHhhhhhhhccccCCccccHHHHHHHHHHHHhccc
Confidence 45899999999999999999999999999885322110 1234567788888888888777544
No 124
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=97.52 E-value=0.00047 Score=54.90 Aligned_cols=72 Identities=17% Similarity=0.274 Sum_probs=64.5
Q ss_pred CceEEEEEEeC-C-eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEec
Q psy7711 9 PHTYIVKVKWG-K-ETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMG 80 (577)
Q Consensus 9 ~~~~~i~vk~~-~-~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~g 80 (577)
...|+|+|+.. + +.+.+.|..++++..|..+.++..|+++..-+++|.|..|.++ |..++++.+|+.|-++|
T Consensus 23 ~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~~ 97 (97)
T 2jxx_A 23 SQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVWG 97 (97)
T ss_dssp CSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEEC
T ss_pred CCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEeC
Confidence 34688888874 4 3678999999999999999999999999999999999989888 99999999999999876
No 125
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=97.52 E-value=1.3e-05 Score=71.89 Aligned_cols=70 Identities=10% Similarity=0.194 Sum_probs=0.0
Q ss_pred ceEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEe
Q psy7711 10 HTYIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLM 79 (577)
Q Consensus 10 ~~~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~ 79 (577)
+-|+|+|...|+...+.|..++++..|+.+.+++.|++++.+|++|.|+.+.++ |..++++.+|++|.++
T Consensus 20 e~InLKV~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~ 90 (227)
T 3v7o_A 20 THINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAH 90 (227)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CeEEEEEeCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEE
Confidence 347777744567778999999999999999999999999999999999999988 9999999999999887
No 126
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=97.47 E-value=0.0005 Score=62.28 Aligned_cols=69 Identities=14% Similarity=0.044 Sum_probs=48.8
Q ss_pred cccccCCCCCchhHHHHHHHhhccHHHHHHHHhhcCCCCCCCCChhhHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHhh
Q psy7711 189 LPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDNMKISPSISPFIMLQVLHNV 268 (577)
Q Consensus 189 ~~~GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~l~~~L~~Lf~~l~~~~~~~~i~P~~~~~~l~~~ 268 (577)
+.+=|+-.-|+||+||++-.|-.... . ++.+|..+..+ +|..|.+.+-..
T Consensus 12 G~~vLkq~dNNCwVNaa~l~LQ~~~~------------------~------~~~aw~~f~~G------d~~~fV~~~Ya~ 61 (211)
T 3mp2_A 12 GKIILKQGDNNCWINACCYQLQAFDF------------------F------NNEAWEKFKKG------DVMDFVNLCYAA 61 (211)
T ss_dssp TEEEECCCTTCHHHHHHHHHHTTCTT------------------C------CCHHHHHHTTT------CCHHHHHHHHHH
T ss_pred CEEEEEccCCCcHHHHHHHHHHhcCh------------------h------HHHHHHHHhCC------ChHHHHHHHHHH
Confidence 34556777899999999888754321 0 67777777776 677777776654
Q ss_pred CCccccccCCCCCCCCCHHHHHHHHH
Q psy7711 269 FPRFADKTDDGSYMQQDANECWTEMV 294 (577)
Q Consensus 269 ~~~f~~~~~~~~~~QqDA~Efl~~ll 294 (577)
.... .++-.||+++|..|+
T Consensus 62 ~~~~-------~G~~gDa~~~L~~Ll 80 (211)
T 3mp2_A 62 TTLA-------RGHSGDAEYLLELML 80 (211)
T ss_dssp HTCC-------TTSCCCHHHHHHHHH
T ss_pred cCCC-------CCCCcCHHHHHHHHH
Confidence 3222 457789999999998
No 127
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=97.40 E-value=0.00096 Score=49.51 Aligned_cols=69 Identities=12% Similarity=0.155 Sum_probs=63.3
Q ss_pred eEEEEEEeCC-eEEEEEeCCCCCHHHHHHHHHHHhCCCCC-CceEEecCCccCCc-cccccccCCCceEEEe
Q psy7711 11 TYIVKVKWGK-ETFEVDVDTDEEPMLFKAQLYELTGVQID-RQKVMCKGATLKND-EWDNFKLSNGSMVLLM 79 (577)
Q Consensus 11 ~~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~v~~~-~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~ 79 (577)
.|++-++.++ ..+.+.|.++.||..|=++-..+-|||++ .-+|.|.|..|..+ ++.+|.+.+|+.|-+|
T Consensus 9 ~~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvm 80 (82)
T 3goe_A 9 LITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVV 80 (82)
T ss_dssp EEEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEE
T ss_pred HHHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeee
Confidence 4677778776 77899999999999999999999999999 99999999999988 9999999999999887
No 128
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.27 E-value=0.0012 Score=51.48 Aligned_cols=72 Identities=11% Similarity=0.107 Sum_probs=66.1
Q ss_pred eEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEeccc
Q psy7711 11 TYIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGSK 82 (577)
Q Consensus 11 ~~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs~ 82 (577)
.|.|+|++.|+..-+.|-.++.+.-|..+.+++.|+.+++-+++|.|..+.++ |-.++++.+|+.|-++-.+
T Consensus 21 ~IniKV~~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~~ 93 (95)
T 2l76_A 21 LFPLKIRCRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVLT 93 (95)
T ss_dssp CEEEEEECSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEECC
T ss_pred eEEEEEEcCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEec
Confidence 49999999888888999999999999999999999999999999999888888 9999999999999887544
No 129
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=96.98 E-value=0.00011 Score=72.59 Aligned_cols=73 Identities=10% Similarity=0.180 Sum_probs=0.0
Q ss_pred CceEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEecc
Q psy7711 9 PHTYIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGS 81 (577)
Q Consensus 9 ~~~~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs 81 (577)
.+-|+|+|+..|+...+.|..++++..|+.+.++..|++++.+|++|.|+.+.++ |..++++.+|++|.++-.
T Consensus 19 ~~~I~LKV~~~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~ 92 (360)
T 3ix6_A 19 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE 92 (360)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CCeEEEEEecCCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhc
Confidence 3458888887667778899999999999999999999999999999999999988 999999999999999844
No 130
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=96.94 E-value=0.0013 Score=50.22 Aligned_cols=67 Identities=9% Similarity=0.221 Sum_probs=56.4
Q ss_pred EEEEEE---eCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-----ceEEecCCccCCc-cccccccCCCceEEE
Q psy7711 12 YIVKVK---WGKETFEVDVDTDEEPMLFKAQLYELTGVQIDR-----QKVMCKGATLKND-EWDNFKLSNGSMVLL 78 (577)
Q Consensus 12 ~~i~vk---~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~-----qkl~~~g~~l~d~-~l~~~~~~~~~~i~l 78 (577)
|.|++- |.++.|++.++..-||..|+..|.+..+++..+ -|+.-||..|.++ .|.+++|++|+.|-+
T Consensus 5 I~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 5 IDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 567776 588999999999999999999999999977532 3344578888888 999999999999865
No 131
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=96.91 E-value=0.0024 Score=59.02 Aligned_cols=74 Identities=9% Similarity=0.185 Sum_probs=66.6
Q ss_pred CceEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEeccc
Q psy7711 9 PHTYIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGSK 82 (577)
Q Consensus 9 ~~~~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs~ 82 (577)
...|.|+|+..++...+.|..++++..|+.+.+++.|+++++++++|.|..+.++ +-.++...+|+.|.++...
T Consensus 19 ~~~i~ikv~~~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq 93 (209)
T 3uf8_A 19 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 93 (209)
T ss_dssp CSEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSC
T ss_pred CCcEEEEEEcCCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhccc
Confidence 3468888887667778999999999999999999999999999999999999888 9999999999999998554
No 132
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=96.48 E-value=0.0028 Score=52.84 Aligned_cols=66 Identities=14% Similarity=0.134 Sum_probs=55.0
Q ss_pred EEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-------------------------------------CceEE
Q psy7711 13 IVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQID-------------------------------------RQKVM 54 (577)
Q Consensus 13 ~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~-------------------------------------~qkl~ 54 (577)
.|+|+. .|...++.|+.+.||..++..|....||+.. +|||-
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 488885 5577899999999999999999999999855 66664
Q ss_pred e--cCCccCCc-cccccccCCCceEEE
Q psy7711 55 C--KGATLKND-EWDNFKLSNGSMVLL 78 (577)
Q Consensus 55 ~--~g~~l~d~-~l~~~~~~~~~~i~l 78 (577)
. .++.|.++ +|.+.||.+|++|.|
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllL 119 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLL 119 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEE
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEE
Confidence 3 23678777 999999999999877
No 133
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=96.36 E-value=0.056 Score=52.30 Aligned_cols=73 Identities=14% Similarity=0.205 Sum_probs=51.3
Q ss_pred ccccCCCCCchhHHHHHHHhhccHHHHHHHHhhcCCCCCCCCChhhHH-HHHHHHHHHHhcCCCCCCCChHHHHHHHHhh
Q psy7711 190 PAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSIT-ASLRDLYECMDNMKISPSISPFIMLQVLHNV 268 (577)
Q Consensus 190 ~~GL~N~GNtCY~NSvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~l~-~~L~~Lf~~l~~~~~~~~i~P~~~~~~l~~~ 268 (577)
.+=|+-.-|+||+||++=+|-+... .|- -+|+++|..+..+ +|..|.+.+-..
T Consensus 102 ~~vLkq~dNNCwVNaa~l~LQ~~~~--------------------~F~~~~l~~aw~~f~~G------d~~~FVa~~Ya~ 155 (315)
T 2fe8_A 102 LTSIKWADNNCYLSSVLLALQQLEV--------------------KFNAPALQEAYYRARAG------DAANFCALILAY 155 (315)
T ss_dssp EECCCCCTTTHHHHHHHHHHHTSCC--------------------CBSSHHHHHHHHHHHHT------CCHHHHHHHHHH
T ss_pred EEEEeecCCccHHHHHHHHHHhcCC--------------------ccCCHHHHHHHHHHhCC------ChHHHHHHHHHh
Confidence 3456667899999998877744310 111 4788888888877 678888877665
Q ss_pred CCccccccCCCCCCCCCHHHHHHHHHH
Q psy7711 269 FPRFADKTDDGSYMQQDANECWTEMVR 295 (577)
Q Consensus 269 ~~~f~~~~~~~~~~QqDA~Efl~~ll~ 295 (577)
.... .++-.||+++|..|+.
T Consensus 156 ~~~~-------~G~~gDa~~~L~~Ll~ 175 (315)
T 2fe8_A 156 SNKT-------VGELGDVRETMTHLLQ 175 (315)
T ss_dssp TTCC-------TTSCCCHHHHHHHHHT
T ss_pred cCCC-------CCCCccHHHHHHHHHh
Confidence 4332 3477899999999853
No 134
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.10 E-value=0.012 Score=45.51 Aligned_cols=74 Identities=11% Similarity=0.085 Sum_probs=65.1
Q ss_pred eEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEeccccC
Q psy7711 11 TYIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGSKEE 84 (577)
Q Consensus 11 ~~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs~~~ 84 (577)
.|.|+|-. ++....|.|.++.|+.++=++-.+++|+.+++=-|.++++.|+-. .+.-.||.+|+++.|+-+...
T Consensus 9 ~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s~s 84 (90)
T 2al3_A 9 GSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVSRS 84 (90)
T ss_dssp -CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSSSC
T ss_pred ccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEccCC
Confidence 36888886 568899999999999999999999999999988899999999777 899999999999999966544
No 135
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=95.96 E-value=0.035 Score=42.88 Aligned_cols=69 Identities=12% Similarity=0.092 Sum_probs=56.7
Q ss_pred CceEEEEEEeC-CeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEE--ecCCccC--Cc--cccccccCCCceEEE
Q psy7711 9 PHTYIVKVKWG-KETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVM--CKGATLK--ND--EWDNFKLSNGSMVLL 78 (577)
Q Consensus 9 ~~~~~i~vk~~-~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~--~~g~~l~--d~--~l~~~~~~~~~~i~l 78 (577)
.++.+|.|+.. |+.+.-....++||.+|..-|.. .+.++...+|+ |..+.+. |. +|.++||.++.+|+|
T Consensus 5 ~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~v 80 (84)
T 3qx1_A 5 EPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFL 80 (84)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEE
Confidence 34678999974 56677788899999999999998 67888888988 5567774 43 899999999999987
No 136
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=95.85 E-value=0.0014 Score=67.03 Aligned_cols=71 Identities=10% Similarity=0.190 Sum_probs=0.0
Q ss_pred eEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEecc
Q psy7711 11 TYIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMGS 81 (577)
Q Consensus 11 ~~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~gs 81 (577)
.|.|+|+..+....+.|..++++..|+...+++.|+++.+++++|.|+.+.++ |..++++.+|++|.++-.
T Consensus 30 ~i~lkv~~~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~ 101 (389)
T 4da1_A 30 HINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHRE 101 (389)
T ss_dssp ------------------------------------------------------------------------
T ss_pred cEEEEEecCCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeec
Confidence 47777877666677999999999999999999999999999999999999988 999999999999998844
No 137
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=94.45 E-value=0.24 Score=40.18 Aligned_cols=71 Identities=8% Similarity=0.082 Sum_probs=59.1
Q ss_pred ceEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEE--ecCCccC--Cc--cccccccCCCceEEEec
Q psy7711 10 HTYIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVM--CKGATLK--ND--EWDNFKLSNGSMVLLMG 80 (577)
Q Consensus 10 ~~~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~--~~g~~l~--d~--~l~~~~~~~~~~i~l~g 80 (577)
...+|.||. .|..+.-....++||.++..-|....+.+...-.|+ |..+.+. |. +|.++||.+...|++.-
T Consensus 12 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~ 89 (109)
T 2dzk_A 12 TIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP 89 (109)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence 358899997 457788889999999999999999988887788887 5667776 43 99999999998887764
No 138
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.20 E-value=0.26 Score=37.05 Aligned_cols=74 Identities=11% Similarity=0.080 Sum_probs=61.3
Q ss_pred CCCc-eEEEEEEeCC-eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEe---cCCccCCc-cccccccCCCceEEEec
Q psy7711 7 KPPH-TYIVKVKWGK-ETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMC---KGATLKND-EWDNFKLSNGSMVLLMG 80 (577)
Q Consensus 7 ~~~~-~~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~---~g~~l~d~-~l~~~~~~~~~~i~l~g 80 (577)
++|+ ++++.|-..+ ++.-+.|+|..++.+|--.|.++..+.|++--|+- .+-.|+=+ +|.+|||++ ++.|-
T Consensus 5 ~~PE~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE---Lya~d 81 (91)
T 2daj_A 5 SSGEKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE---LYAMD 81 (91)
T ss_dssp SCCCSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE---EEEEE
T ss_pred CCCccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh---hheec
Confidence 4443 7999999876 88889999999999999999999999999888873 34567666 999999998 77775
Q ss_pred ccc
Q psy7711 81 SKE 83 (577)
Q Consensus 81 s~~ 83 (577)
+..
T Consensus 82 ~~~ 84 (91)
T 2daj_A 82 VNR 84 (91)
T ss_dssp CCC
T ss_pred ccc
Confidence 553
No 139
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=93.94 E-value=0.27 Score=40.96 Aligned_cols=70 Identities=9% Similarity=0.143 Sum_probs=57.9
Q ss_pred CceEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEE--ecCCcc--CC-c-cccccccCCCceEEEe
Q psy7711 9 PHTYIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVM--CKGATL--KN-D-EWDNFKLSNGSMVLLM 79 (577)
Q Consensus 9 ~~~~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~--~~g~~l--~d-~-~l~~~~~~~~~~i~l~ 79 (577)
....+|.||. .|..+.-.+..++||.+|..-|... +.++..-.|+ |..+.+ .| + +|.++||.+...|+|.
T Consensus 41 ~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~ 117 (124)
T 1wj4_A 41 GPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 117 (124)
T ss_dssp SCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEE
Confidence 3468999997 4577888899999999999999887 7888888887 567878 34 3 9999999998888775
No 140
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=93.62 E-value=0.22 Score=37.30 Aligned_cols=59 Identities=22% Similarity=0.178 Sum_probs=46.3
Q ss_pred EEEEEEeCC-eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCccccccccCCCceEEEe
Q psy7711 12 YIVKVKWGK-ETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKNDEWDNFKLSNGSMVLLM 79 (577)
Q Consensus 12 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~~l~~~~~~~~~~i~l~ 79 (577)
|+|+||-.+ ....++++...||.+|=++ .|+|++.--++.+|..+..|. +.+|++|-++
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~----Lgl~~~~VvV~vNG~~v~~d~-----~l~GD~VeIv 60 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVRA----VDLSPHEVTVLVDGRPVPEDQ-----SVEVDRVKVL 60 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHHT----TCCCSSCCCEECCCCCCCTTS-----SSCCCCEEEC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHHH----cCCCcceEEEEECCEECCHHH-----CCCCCEEEEE
Confidence 678888766 4456899999999997554 899999997788998886664 2359999887
No 141
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=93.29 E-value=0.59 Score=34.42 Aligned_cols=61 Identities=11% Similarity=0.144 Sum_probs=47.8
Q ss_pred eEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCccccccccCCCceEEEe
Q psy7711 11 TYIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKNDEWDNFKLSNGSMVLLM 79 (577)
Q Consensus 11 ~~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~~l~~~~~~~~~~i~l~ 79 (577)
.|+|+|--......++++...||.+|.+++ ++++++-.+..+|..+..+. -|++|+.|-++
T Consensus 4 ~m~i~vNg~~~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~----~L~~gD~V~ii 64 (70)
T 1ryj_A 4 GMKFTVITDDGKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE----EIFDGDIIEVI 64 (70)
T ss_dssp CEEEEEEETTEEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS----BCCTTCEEEEE
T ss_pred eEEEEEeCccCceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc----cCCCCCEEEEE
Confidence 488888777767778888889999998876 67777666678888776553 58999999887
No 142
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=92.22 E-value=0.37 Score=36.64 Aligned_cols=46 Identities=11% Similarity=0.173 Sum_probs=41.4
Q ss_pred eEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecC
Q psy7711 11 TYIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKG 57 (577)
Q Consensus 11 ~~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g 57 (577)
.|+|+|... -++.|.|..+.+..+|..+|.++.++|++.-+|-|+-
T Consensus 5 ~~~VKV~~~-~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~ 50 (83)
T 1oey_A 5 AYTLKVHYK-YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP 50 (83)
T ss_dssp CEEEEEESS-SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred cEEEEEEEE-EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence 478888877 6788999999999999999999999999999998874
No 143
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=90.39 E-value=0.94 Score=36.65 Aligned_cols=68 Identities=4% Similarity=0.088 Sum_probs=54.9
Q ss_pred eEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEE--ecCCccC-Cc--cccccccCCCceEEEe
Q psy7711 11 TYIVKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVM--CKGATLK-ND--EWDNFKLSNGSMVLLM 79 (577)
Q Consensus 11 ~~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~--~~g~~l~-d~--~l~~~~~~~~~~i~l~ 79 (577)
..+|.|+. .|+.+.-....++||.+|..-|... +..+..-+|+ |..+.+. |. +|.++||.+...|+|-
T Consensus 23 ~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve 96 (109)
T 2cr5_A 23 VVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVE 96 (109)
T ss_dssp EEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEE
Confidence 68999997 4567777888899999999999965 5666777776 5677786 33 9999999999888775
No 144
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=90.11 E-value=0.5 Score=36.47 Aligned_cols=60 Identities=7% Similarity=0.083 Sum_probs=46.4
Q ss_pred EEEEeCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCCCCceEEecCCccCCccccccccCCCceEEEe
Q psy7711 14 VKVKWGKETFEVDVDTD-EEPMLFKAQLYELTGVQIDRQKVMCKGATLKNDEWDNFKLSNGSMVLLM 79 (577)
Q Consensus 14 i~vk~~~~~~~~~v~~~-~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~~l~~~~~~~~~~i~l~ 79 (577)
++|.-+|+.++ ++.. .||.+|.+++ ++++++-.+..+|..+..+.+.+..|++|+.|-++
T Consensus 21 M~I~vNGe~~e--l~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~~~~~~~L~dGD~Vei~ 81 (87)
T 1tyg_B 21 HMLQLNGKDVK--WKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKERYHEVELCDRDVIEIV 81 (87)
T ss_dssp -CEEETTEEEC--CSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGGGTTTSBCCSSSEEEEE
T ss_pred eEEEECCEEEE--CCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChhhcCCcCCCCCCEEEEE
Confidence 35666787554 4555 7999998876 67777777778998887777888899999999887
No 145
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=88.70 E-value=1.4 Score=40.49 Aligned_cols=67 Identities=6% Similarity=0.104 Sum_probs=51.1
Q ss_pred EEEEEEeCCe---EEEEEeCCCCCHHHHHHHHHHHhCCCCC-CceEE--ecC---CccCCc--cccccccCCCceEEE
Q psy7711 12 YIVKVKWGKE---TFEVDVDTDEEPMLFKAQLYELTGVQID-RQKVM--CKG---ATLKND--EWDNFKLSNGSMVLL 78 (577)
Q Consensus 12 ~~i~vk~~~~---~~~~~v~~~~tv~~lk~~i~~~~~v~~~-~qkl~--~~g---~~l~d~--~l~~~~~~~~~~i~l 78 (577)
+.+++..... .+.+.++..+|+.+|++.+..+++||++ .-||- +.. ..|.|+ +|.+++|.+|+.|.|
T Consensus 128 ~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~ill 205 (217)
T 4a3p_A 128 TELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVI 205 (217)
T ss_dssp EEEEEEETTEEEEEEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEE
T ss_pred cEEEEEecCCCCcceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEE
Confidence 3455554442 2568889999999999999999999998 47764 322 346654 999999999999965
No 146
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=88.50 E-value=1.1 Score=33.82 Aligned_cols=67 Identities=10% Similarity=0.079 Sum_probs=49.2
Q ss_pred eEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEE-ecC----CccCCc-cccccccCCCceEEEec
Q psy7711 11 TYIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVM-CKG----ATLKND-EWDNFKLSNGSMVLLMG 80 (577)
Q Consensus 11 ~~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~-~~g----~~l~d~-~l~~~~~~~~~~i~l~g 80 (577)
.|+|+|-..+.-+.|.|+++.+..+|+.+|..+..+. ...+. +++ ..+.+| .| +..|....+|+|-+
T Consensus 12 ~~KVK~yy~DDIiAIrvP~di~~~~L~dKi~~RLk~~--~~~l~~ykde~~g~~i~sD~dl-~~aiqrn~KL~l~~ 84 (85)
T 1ip9_A 12 TTKIKFYYKDDIFALMLKGDTTYKELRSKIAPRIDTD--NFKLQTKLFDGSGEEIKTDSQV-SNIIQAKLKISVHD 84 (85)
T ss_dssp CEEEEECBTTCCEEEEECSCCCHHHHHHHHHHHHTSS--CEEEEECCSSSCCSCCCSHHHH-HHHHHTTCCEEEEE
T ss_pred ceEEEEEecCcEEEEECCCCCCHHHHHHHHHHHhccc--ceEEEEecCCCCCCcccCHHHH-HHHHHhcCeeEEec
Confidence 4788888888889999999999999999999999883 44544 443 334444 33 33577777777754
No 147
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=88.22 E-value=0.94 Score=37.80 Aligned_cols=68 Identities=9% Similarity=0.107 Sum_probs=53.1
Q ss_pred CceEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHH-hCCCCCCceEE--ecCCccCCc--cccccccCCCceE
Q psy7711 9 PHTYIVKVKW-GKETFEVDVDTDEEPMLFKAQLYEL-TGVQIDRQKVM--CKGATLKND--EWDNFKLSNGSMV 76 (577)
Q Consensus 9 ~~~~~i~vk~-~~~~~~~~v~~~~tv~~lk~~i~~~-~~v~~~~qkl~--~~g~~l~d~--~l~~~~~~~~~~i 76 (577)
....+|.|+. .|..+.-.+..++||.+|..-|... .+.....-.|+ |..+.+.|+ +|.++||.+...|
T Consensus 50 ~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 50 EPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp SCCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 3457888887 4577888899999999999999986 44566677777 456788765 9999999985544
No 148
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=87.00 E-value=1 Score=32.36 Aligned_cols=57 Identities=16% Similarity=0.169 Sum_probs=43.7
Q ss_pred EEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCccccccccCCCceEEEe
Q psy7711 16 VKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKNDEWDNFKLSNGSMVLLM 79 (577)
Q Consensus 16 vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~~l~~~~~~~~~~i~l~ 79 (577)
|+-+|+.+++ ...||.+|.+.+ ++++..-.+..+|..+..+.+.+.-|++|+.|-++
T Consensus 2 i~vNg~~~~~---~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~~~~~~~L~dgD~v~i~ 58 (64)
T 2cu3_A 2 VWLNGEPRPL---EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVV 58 (64)
T ss_dssp EEETTEEECC---TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGGGCCCCCCCTTCEEEEE
T ss_pred EEECCEEEEc---CCCcHHHHHHHc----CCCCCcEEEEECCEECCccccCCcCCCCCCEEEEE
Confidence 4556776654 457999998876 56666666678998887667778899999999887
No 149
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=85.74 E-value=3.6 Score=38.19 Aligned_cols=67 Identities=9% Similarity=0.178 Sum_probs=50.9
Q ss_pred EEEEEEeCCe---EEEEEeCCCCCHHHHHHHHHHHhCCCCC-CceEEe-cC----CccCC-c-cccccccCCCceEEE
Q psy7711 12 YIVKVKWGKE---TFEVDVDTDEEPMLFKAQLYELTGVQID-RQKVMC-KG----ATLKN-D-EWDNFKLSNGSMVLL 78 (577)
Q Consensus 12 ~~i~vk~~~~---~~~~~v~~~~tv~~lk~~i~~~~~v~~~-~qkl~~-~g----~~l~d-~-~l~~~~~~~~~~i~l 78 (577)
+.+++..... .+.+.++..+|+.+|++.+..+++|+++ .-||-. .+ ..|.| + +|.+++|.+|+.|.|
T Consensus 140 ~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~ill 217 (231)
T 3jyu_A 140 LELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVI 217 (231)
T ss_dssp EEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEE
T ss_pred ceEEEEecCCCCceEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEE
Confidence 4555555442 2457789999999999999999999998 477753 22 34665 4 999999999999866
No 150
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=85.33 E-value=3.7 Score=31.61 Aligned_cols=48 Identities=4% Similarity=-0.015 Sum_probs=40.1
Q ss_pred CceEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCc-eEEec
Q psy7711 9 PHTYIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQ-KVMCK 56 (577)
Q Consensus 9 ~~~~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~q-kl~~~ 56 (577)
+.+|+|++..+|....+.++++.+..+|.++|.+..+++.++. .|-|+
T Consensus 4 ~~~vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~ 52 (89)
T 1vd2_A 4 GSQVRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWI 52 (89)
T ss_dssp SSCEEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEEC
T ss_pred CCeEEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEE
Confidence 4569999999998889999999999999999999999886553 33354
No 151
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=84.82 E-value=1.3 Score=32.91 Aligned_cols=57 Identities=14% Similarity=0.188 Sum_probs=46.2
Q ss_pred EEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCccccccccCCCceEEEe
Q psy7711 16 VKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKNDEWDNFKLSNGSMVLLM 79 (577)
Q Consensus 16 vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~~l~~~~~~~~~~i~l~ 79 (577)
|.-+|+.+++ ...||.+|-++ .+++++.--+.++|.++..+.+.+.-|++|++|-++
T Consensus 3 I~vNG~~~e~---~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr~~~~~~~L~dGD~veIv 59 (73)
T 2kl0_A 3 VTINGEQREV---QSASVAALMTE----LDCTGGHFAVALNYDVVPRGKWDETPVTAGDEIEIL 59 (73)
T ss_dssp EEETTEEECC---CCSBHHHHHHH----TTCCSSSCEEEESSSEECHHHHTTCBCCTTCEEEEE
T ss_pred EEECCEEEEc---CCCcHHHHHHH----cCCCCCcEEEEECCEECChHHcCcccCCCCCEEEEE
Confidence 4556776655 45799998665 588988888889999998778889999999999887
No 152
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=84.53 E-value=0.46 Score=39.40 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=20.3
Q ss_pred cccccCCCCCchhHHHHHHHhhc
Q psy7711 189 LPAGLNNLGNTCYMNAVIQCLKT 211 (577)
Q Consensus 189 ~~~GL~N~GNtCY~NSvLQ~L~~ 211 (577)
...|+.|..++||+|++||....
T Consensus 12 ~fys~pN~hdncWLNtilQLfry 34 (167)
T 1qmy_A 12 TFYSRPNNHDNAWLNAILQLFRY 34 (167)
T ss_dssp ECCCCCCSSSCHHHHHHHHHHHH
T ss_pred ccccCCCCCcchHHHHHHHHHHH
Confidence 45799999999999999999864
No 153
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=83.80 E-value=1 Score=33.90 Aligned_cols=61 Identities=15% Similarity=0.183 Sum_probs=46.7
Q ss_pred EEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCC-CCCceEEecCCccCCccccccccCCCceEEEe
Q psy7711 15 KVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQ-IDRQKVMCKGATLKNDEWDNFKLSNGSMVLLM 79 (577)
Q Consensus 15 ~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~-~~~qkl~~~g~~l~d~~l~~~~~~~~~~i~l~ 79 (577)
+|.-+|+.++++.....||.+|-++ .|++ ++.--+.++|.++..+.+.+..|++|++|-++
T Consensus 2 ~I~vNGe~~e~~~~~~~Tl~~LL~~----l~~~~~~~vAVavNg~iVpr~~~~~~~L~dGD~IEIv 63 (78)
T 2k5p_A 2 NLTVNGKPSTVDGAESLNVTELLSA----LKVAQAEYVTVELNGEVLEREAFDATTVKDGDAVEFL 63 (78)
T ss_dssp EEEETTEEEECSSCSCEEHHHHHHH----HTCSCTTTCCEEETTEECCTTHHHHCEECSSBCEEEC
T ss_pred EEEECCEEEEcCCCCCCcHHHHHHH----cCCCCCCcEEEEECCEECChHHcCcccCCCCCEEEEE
Confidence 3455677555432156799998775 4788 87777889999998888888999999999887
No 154
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=83.38 E-value=1.2 Score=36.36 Aligned_cols=70 Identities=13% Similarity=0.226 Sum_probs=44.5
Q ss_pred CCceEEEEEEeC--------C-eEEEEEeCC---CCCHHHHHHHHHHHhCCCCCCceEEec-CC------cc-CCcc--c
Q psy7711 8 PPHTYIVKVKWG--------K-ETFEVDVDT---DEEPMLFKAQLYELTGVQIDRQKVMCK-GA------TL-KNDE--W 65 (577)
Q Consensus 8 ~~~~~~i~vk~~--------~-~~~~~~v~~---~~tv~~lk~~i~~~~~v~~~~qkl~~~-g~------~l-~d~~--l 65 (577)
|.++|+|+|+.. + +.+.|+++. ..||.+|-..|.+.. |..+.+|+.. |+ ++ .+.. +
T Consensus 8 ~~~~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlVN~~di~~ 85 (114)
T 1wgk_A 8 MAAPLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNL--LKERPELFIQGDSVRPGILVLINDADWEL 85 (114)
T ss_dssp CCCCEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTT--CCSCHHHHCCSSSCCSSEEEEESSSBHHH
T ss_pred cCCCcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHc--cchhHhhCccCCcccCCeEEEECCeeeec
Confidence 446799999852 2 246788884 259999988887765 4445555433 32 12 2222 2
Q ss_pred ---cccccCCCceEEEe
Q psy7711 66 ---DNFKLSNGSMVLLM 79 (577)
Q Consensus 66 ---~~~~~~~~~~i~l~ 79 (577)
.++.|++|+.|.++
T Consensus 86 l~gldt~L~dGDeV~ii 102 (114)
T 1wgk_A 86 LGELDYQLQDQDSILFI 102 (114)
T ss_dssp HCTTTCBCCSSEEEEEE
T ss_pred cCCcCcCCCCCCEEEEe
Confidence 34579999999887
No 155
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=82.85 E-value=3.3 Score=41.47 Aligned_cols=70 Identities=14% Similarity=0.091 Sum_probs=55.6
Q ss_pred ceEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhC----CCCCCceEEe------cCCccCCc-cccccccCCCceEEE
Q psy7711 10 HTYIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTG----VQIDRQKVMC------KGATLKND-EWDNFKLSNGSMVLL 78 (577)
Q Consensus 10 ~~~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~----v~~~~qkl~~------~g~~l~d~-~l~~~~~~~~~~i~l 78 (577)
..+.++|...+.+-.+.++++.||.|.-..|.++.. .+++.=-|.. +|..|+++ +|..|++.+|+.|..
T Consensus 2 ~~~~~~~~~~~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~ 81 (371)
T 3ivf_A 2 VALSLKISIGNVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEY 81 (371)
T ss_dssp CCEEEEEEETTEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEE
T ss_pred ccEEEEEEecceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeec
Confidence 356777777787789999999999999999988763 3555556654 46678888 999999999988766
Q ss_pred e
Q psy7711 79 M 79 (577)
Q Consensus 79 ~ 79 (577)
-
T Consensus 82 ~ 82 (371)
T 3ivf_A 82 R 82 (371)
T ss_dssp E
T ss_pred c
Confidence 4
No 156
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=82.85 E-value=0.99 Score=37.77 Aligned_cols=32 Identities=16% Similarity=0.122 Sum_probs=28.8
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCceEEe
Q psy7711 24 EVDVDTDEEPMLFKAQLYELTGVQIDRQKVMC 55 (577)
Q Consensus 24 ~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~ 55 (577)
.+.|-.+.|+.+||..|+..+|+|+++|||-.
T Consensus 59 ~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 59 VFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred eEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence 46777889999999999999999999999863
No 157
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=80.66 E-value=3.8 Score=41.28 Aligned_cols=41 Identities=15% Similarity=0.339 Sum_probs=36.5
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCcc
Q psy7711 20 KETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATL 60 (577)
Q Consensus 20 ~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l 60 (577)
-..+.+.+.+..|+.+|++.|+..|+|+++.|.+++.+..+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~ 361 (396)
T 4eut_A 321 MTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRL 361 (396)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEE
T ss_pred ceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCC
Confidence 36678899999999999999999999999999999988433
No 158
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=80.58 E-value=1.9 Score=31.12 Aligned_cols=58 Identities=10% Similarity=0.287 Sum_probs=43.6
Q ss_pred EEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCccccccccCCCceEEEe
Q psy7711 16 VKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKNDEWDNFKLSNGSMVLLM 79 (577)
Q Consensus 16 vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~~l~~~~~~~~~~i~l~ 79 (577)
|+-+|+.+ +++...||.+|.+++ ++++++-.+..+|..+..+.+.+.-|++|+.|-++
T Consensus 3 i~vNg~~~--~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~~~~~~~L~~gD~v~i~ 60 (66)
T 1f0z_A 3 ILFNDQAM--QCAAGQTVHELLEQL----DQRQAGAALAINQQIVPREQWAQHIVQDGDQILLF 60 (66)
T ss_dssp EEESSCEE--CCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHHHHTTCCCCTTEEECEE
T ss_pred EEECCEEE--EcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCchhcCCcCCCCCCEEEEE
Confidence 45566644 455668999998886 56776666678898776656777789999999887
No 159
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=79.73 E-value=3.8 Score=30.26 Aligned_cols=64 Identities=17% Similarity=0.221 Sum_probs=40.8
Q ss_pred EEEEEEeCC--eEEEEEeCCCCCHHHHHHHHHHHhCCCC--CCceEEecCCccCCccccccccCCCceEEEe
Q psy7711 12 YIVKVKWGK--ETFEVDVDTDEEPMLFKAQLYELTGVQI--DRQKVMCKGATLKNDEWDNFKLSNGSMVLLM 79 (577)
Q Consensus 12 ~~i~vk~~~--~~~~~~v~~~~tv~~lk~~i~~~~~v~~--~~qkl~~~g~~l~d~~l~~~~~~~~~~i~l~ 79 (577)
|+|+|+.-+ ..-.+++ ...||.+|.+++....++.. ..-.+..+|..+.+. +.-|++|+.|.++
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~---~~~l~~gDeV~i~ 68 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNL---NTPLKDGDVISLL 68 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCT---TCCCCTTCEEEEE
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCC---CcCCCCCCEEEEE
Confidence 568888533 2234667 46799999999986533322 233445677764332 3358999999887
No 160
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=77.70 E-value=11 Score=29.43 Aligned_cols=65 Identities=14% Similarity=0.164 Sum_probs=44.5
Q ss_pred eEEEEEEeCC--------eEEEEEeCCCCCHHHHHHHHHHHhC-C----------CCCCceEEecCCccCCccccccccC
Q psy7711 11 TYIVKVKWGK--------ETFEVDVDTDEEPMLFKAQLYELTG-V----------QIDRQKVMCKGATLKNDEWDNFKLS 71 (577)
Q Consensus 11 ~~~i~vk~~~--------~~~~~~v~~~~tv~~lk~~i~~~~~-v----------~~~~qkl~~~g~~l~d~~l~~~~~~ 71 (577)
.|+|+|+.-+ ....++++...||.+|.+.|..... + ....-.+..+|..... +..|+
T Consensus 9 ~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~----~~~L~ 84 (98)
T 1vjk_A 9 SVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW----DEELK 84 (98)
T ss_dssp CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT----TCBCC
T ss_pred cEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC----CCCCC
Confidence 4788888532 3457888777899999999987641 1 0123345567766643 34589
Q ss_pred CCceEEEe
Q psy7711 72 NGSMVLLM 79 (577)
Q Consensus 72 ~~~~i~l~ 79 (577)
+|+.|.++
T Consensus 85 dGDeV~i~ 92 (98)
T 1vjk_A 85 DGDVVGVF 92 (98)
T ss_dssp TTCEEEEE
T ss_pred CCCEEEEE
Confidence 99999887
No 161
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=76.61 E-value=9.2 Score=29.91 Aligned_cols=38 Identities=8% Similarity=0.052 Sum_probs=32.6
Q ss_pred ceEEEEEEeC--------CeEEEEEeCCCCCHHHHHHHHHHHhCCC
Q psy7711 10 HTYIVKVKWG--------KETFEVDVDTDEEPMLFKAQLYELTGVQ 47 (577)
Q Consensus 10 ~~~~i~vk~~--------~~~~~~~v~~~~tv~~lk~~i~~~~~v~ 47 (577)
..|+|+|..+ +..+.|-|+++.+..+|..+|..+.+++
T Consensus 4 ~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 4 GSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp SCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 3588888887 5568899999999999999999998875
No 162
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=76.57 E-value=14 Score=28.86 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=25.0
Q ss_pred EEEEEEe--------CC-eEEEEEeC--CCCCHHHHHHHHHHHh
Q psy7711 12 YIVKVKW--------GK-ETFEVDVD--TDEEPMLFKAQLYELT 44 (577)
Q Consensus 12 ~~i~vk~--------~~-~~~~~~v~--~~~tv~~lk~~i~~~~ 44 (577)
|+|+|+. +| +..+++++ ...||.+|...|.+..
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~ 45 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTM 45 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHT
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHC
Confidence 6788874 13 44667776 5689999999998876
No 163
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=74.19 E-value=6.2 Score=31.04 Aligned_cols=68 Identities=15% Similarity=0.123 Sum_probs=42.3
Q ss_pred eEEEEEEeCCe--E----EEEEeCCCCCHHHHHHHHHHHhC-CCC---C------Cc-------eEEecCCccCCccccc
Q psy7711 11 TYIVKVKWGKE--T----FEVDVDTDEEPMLFKAQLYELTG-VQI---D------RQ-------KVMCKGATLKNDEWDN 67 (577)
Q Consensus 11 ~~~i~vk~~~~--~----~~~~v~~~~tv~~lk~~i~~~~~-v~~---~------~q-------kl~~~g~~l~d~~l~~ 67 (577)
||+|+|+.-+. . -.++++ ..||.+|.+.+..... ... + +- .+..+|.........+
T Consensus 3 mm~v~V~~fa~lr~~~g~~~~~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~~~~ 81 (99)
T 2l52_A 3 MAEVKVKLFANLREAAGTPELPLS-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLEGLE 81 (99)
T ss_dssp CCEEEEEECTHHHHHHSSSEEEEE-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTTSTT
T ss_pred ceEEEEEEeHHHHHHhCCCeEEEe-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccCCCC
Confidence 47888886441 1 134444 5799999999987741 111 0 12 4567776654333345
Q ss_pred cccCCCceEEEe
Q psy7711 68 FKLSNGSMVLLM 79 (577)
Q Consensus 68 ~~~~~~~~i~l~ 79 (577)
.-|++|+.|.++
T Consensus 82 ~~L~~gD~V~i~ 93 (99)
T 2l52_A 82 TLLKDSDEIGIL 93 (99)
T ss_dssp SCCCTTEEEEEE
T ss_pred CCCCCCCEEEEE
Confidence 568999999887
No 164
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=72.45 E-value=1 Score=36.39 Aligned_cols=70 Identities=13% Similarity=0.191 Sum_probs=40.6
Q ss_pred CceEEEEEEeCC-------eEEEEEeCC----CCCHHHHHHHHHHHhCCCCCCceEEecCC---------ccCCc-cc--
Q psy7711 9 PHTYIVKVKWGK-------ETFEVDVDT----DEEPMLFKAQLYELTGVQIDRQKVMCKGA---------TLKND-EW-- 65 (577)
Q Consensus 9 ~~~~~i~vk~~~-------~~~~~~v~~----~~tv~~lk~~i~~~~~v~~~~qkl~~~g~---------~l~d~-~l-- 65 (577)
+.+|+|+|+..+ +.+.|+++. ..||.+|=..|.+.. |..|-+|...+. +|-++ .+
T Consensus 2 ~~~m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~--~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~ 79 (110)
T 2k9x_A 2 SNHNHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNY--VKERPDLLVDQTGQTLRPGILVLVNSCDAEV 79 (110)
T ss_dssp CCSSCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTT--CCSCHHHHBCSSSSSBCTTEEEEESSSBHHH
T ss_pred CCccEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHc--cccchhhEecCCCcccCCCeEEEECCeeeec
Confidence 335888888533 234677763 248888777666654 445556543322 23233 32
Q ss_pred ---cccccCCCceEEEec
Q psy7711 66 ---DNFKLSNGSMVLLMG 80 (577)
Q Consensus 66 ---~~~~~~~~~~i~l~g 80 (577)
.++.|++|+.|.++-
T Consensus 80 l~gldt~L~dgD~V~fis 97 (110)
T 2k9x_A 80 VGGMDYVLNDGDTVEFIS 97 (110)
T ss_dssp HTSSCCCCCSSCEEEEEE
T ss_pred cCCcccCCCCcCEEEEeC
Confidence 235688888887763
No 165
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=67.16 E-value=17 Score=30.20 Aligned_cols=70 Identities=17% Similarity=0.279 Sum_probs=45.6
Q ss_pred eEEEEEEeC-------CeEEEEEeCCCCCHHHHHHHHHHH--hCCCCCC------ceEEe-c---CC-ccCCc-------
Q psy7711 11 TYIVKVKWG-------KETFEVDVDTDEEPMLFKAQLYEL--TGVQIDR------QKVMC-K---GA-TLKND------- 63 (577)
Q Consensus 11 ~~~i~vk~~-------~~~~~~~v~~~~tv~~lk~~i~~~--~~v~~~~------qkl~~-~---g~-~l~d~------- 63 (577)
+++|+|--. .+.+.|.|=.-+||..+|++|-+. .|+|-++ .-|=. . |+ +|.|.
T Consensus 24 ~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~ 103 (138)
T 2r2o_A 24 PLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQ 103 (138)
T ss_dssp EEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEE
T ss_pred EEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCccccc
Confidence 466666543 245778877778999999999877 4566542 11211 1 11 13332
Q ss_pred -------cccccccCCCceEEEec
Q psy7711 64 -------EWDNFKLSNGSMVLLMG 80 (577)
Q Consensus 64 -------~l~~~~~~~~~~i~l~g 80 (577)
+|..|+|.+|++|-|+-
T Consensus 104 ~~wkrLNTL~HY~V~Dga~l~l~~ 127 (138)
T 2r2o_A 104 GLWRRLNTLQHYKVPDGATVALVP 127 (138)
T ss_dssp TTEEECCBHHHHTCCTTCEEEEEE
T ss_pred CCceeecchhccCCCCCCEEEEEE
Confidence 67888999999998873
No 166
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=59.02 E-value=34 Score=25.99 Aligned_cols=42 Identities=12% Similarity=0.022 Sum_probs=36.3
Q ss_pred CCCCceEEEEEEeCCeEEEEEeCC--CCCHHHHHHHHHHHhCCC
Q psy7711 6 GKPPHTYIVKVKWGKETFEVDVDT--DEEPMLFKAQLYELTGVQ 47 (577)
Q Consensus 6 ~~~~~~~~i~vk~~~~~~~~~v~~--~~tv~~lk~~i~~~~~v~ 47 (577)
|+|..++.++|-+.|+.+.+.|+. +.|..+|..-+...+|+.
T Consensus 1 ~~~~~~v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~ 44 (87)
T 2bkf_A 1 GAMEPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN 44 (87)
T ss_dssp -CCCCCEEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS
T ss_pred CCCCceEEEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCC
Confidence 467778999999999988877765 789999999999999986
No 167
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=58.88 E-value=18 Score=27.73 Aligned_cols=55 Identities=7% Similarity=0.014 Sum_probs=35.4
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCC------C-------CCCceEEecCCccCCccccccccCCCceEEEe
Q psy7711 24 EVDVDTDEEPMLFKAQLYELTGV------Q-------IDRQKVMCKGATLKNDEWDNFKLSNGSMVLLM 79 (577)
Q Consensus 24 ~~~v~~~~tv~~lk~~i~~~~~v------~-------~~~qkl~~~g~~l~d~~l~~~~~~~~~~i~l~ 79 (577)
.++++ ..||.+|.+.|.....- . ...-.+..+|....+....+.-|++|+.|.++
T Consensus 20 ~~~~~-~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~~~~L~~gDeV~i~ 87 (93)
T 3dwg_C 20 SVSAS-GDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGLATAIADGDSVTIL 87 (93)
T ss_dssp EEEEC-CSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGGGCBCCTTCEEEEE
T ss_pred EEecC-CCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCCCcCCCCCCEEEEE
Confidence 46654 57999999999887520 0 01234556776554332234569999999887
No 168
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=58.64 E-value=31 Score=26.04 Aligned_cols=56 Identities=9% Similarity=0.079 Sum_probs=37.9
Q ss_pred EEEeCCCCCHHHHHHHHHHHhC------C-----CCCCceEEecCCccCCccccccccCCCceEEEe
Q psy7711 24 EVDVDTDEEPMLFKAQLYELTG------V-----QIDRQKVMCKGATLKNDEWDNFKLSNGSMVLLM 79 (577)
Q Consensus 24 ~~~v~~~~tv~~lk~~i~~~~~------v-----~~~~qkl~~~g~~l~d~~l~~~~~~~~~~i~l~ 79 (577)
.++++...||.+|.+.+..... + ....-.+.++|.........+.-|++|+.|.++
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~~~~~~l~~gD~V~i~ 84 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMKGLDTEIKDDDKIDLF 84 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTCSSSCBCCTTCEEEEE
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccCCCCcCCCCCCEEEEe
Confidence 3556666899999999987641 1 013344667887665333445579999999887
No 169
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=57.27 E-value=23 Score=28.96 Aligned_cols=60 Identities=13% Similarity=0.222 Sum_probs=42.8
Q ss_pred EEEeCC----CCCHHHHHHHHHHHhCCCC-------CCceEEecCCccCCc---cccccccCCCceEEEeccccC
Q psy7711 24 EVDVDT----DEEPMLFKAQLYELTGVQI-------DRQKVMCKGATLKND---EWDNFKLSNGSMVLLMGSKEE 84 (577)
Q Consensus 24 ~~~v~~----~~tv~~lk~~i~~~~~v~~-------~~qkl~~~g~~l~d~---~l~~~~~~~~~~i~l~gs~~~ 84 (577)
.+.|+. ..|+.+|=..|....|.+- ..+||+|.-- ..|. +|+++||++|+.|+++.-.+.
T Consensus 9 vl~v~~~dl~~~TL~dLV~~l~~~~gy~~eiSV~~~~~~rLLyD~D-fDDnl~k~L~dLgv~~gsfLtv~DEdde 82 (127)
T 3onh_A 9 VIKLSSDCLNKMKLSDFVVLIREKYSYPQDISLLDASNQRLLFDYD-FEDLNDRTLSEINLGNGSIILFSDEEGD 82 (127)
T ss_dssp EEEECHHHHHHCBHHHHHHHHHHHHTCCSSEEEEETTTTEEEEETT-BCTTTTSBTTTTTCCTTCEEEEEESCCS
T ss_pred EEEeCcccccccCHHHHHHHHHHhcCCCCcEEEEecCCCCeEeCCC-ccccccCcHHHcCcCCCcEEEEEccccc
Confidence 455654 3699999888988888653 2466666431 2333 899999999999999976544
No 170
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=57.05 E-value=32 Score=26.00 Aligned_cols=55 Identities=22% Similarity=0.154 Sum_probs=37.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhC-CC----C------CCceEEecCCccCCccccccccCCCceEEEe
Q psy7711 21 ETFEVDVDTDEEPMLFKAQLYELTG-VQ----I------DRQKVMCKGATLKNDEWDNFKLSNGSMVLLM 79 (577)
Q Consensus 21 ~~~~~~v~~~~tv~~lk~~i~~~~~-v~----~------~~qkl~~~g~~l~d~~l~~~~~~~~~~i~l~ 79 (577)
....++++...||.+|.++|..... +. . ..-.+..+|.....+ .-|++|+.|.++
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~~----~~l~~gDeV~i~ 83 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALG----EATAAGDELALF 83 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCTT----SBCCTTCEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCCC----cccCCCCEEEEE
Confidence 4567888778899999999987752 10 0 113455677655443 358999999887
No 171
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=52.92 E-value=25 Score=27.22 Aligned_cols=38 Identities=24% Similarity=0.331 Sum_probs=33.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEE-ecCC
Q psy7711 21 ETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVM-CKGA 58 (577)
Q Consensus 21 ~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~-~~g~ 58 (577)
..+.+.|++.+|=-++|++|+.+++|.+..-.-+ .+|+
T Consensus 28 n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK 66 (93)
T 3r8s_T 28 NTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGK 66 (93)
T ss_dssp SEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCc
Confidence 5789999999999999999999999999987754 6664
No 172
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=51.62 E-value=31 Score=25.87 Aligned_cols=57 Identities=16% Similarity=0.124 Sum_probs=48.6
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCc-cccccccCCCceEEEe
Q psy7711 23 FEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND-EWDNFKLSNGSMVLLM 79 (577)
Q Consensus 23 ~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~ 79 (577)
+...+|-.+++.+||..++.+.|+.-+.=.+-..+..|.++ +|.+-+|+-...|-+.
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQin 62 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLS 62 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEE
Confidence 34556677899999999999999999999988888789999 9999999987777664
No 173
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=49.79 E-value=40 Score=26.92 Aligned_cols=69 Identities=13% Similarity=0.150 Sum_probs=43.4
Q ss_pred eEEEEEEeC---CeEEEEEeCCCCCHHHHHHHHHHH--hCCCCC------CceEEe-c---CCccCCc------------
Q psy7711 11 TYIVKVKWG---KETFEVDVDTDEEPMLFKAQLYEL--TGVQID------RQKVMC-K---GATLKND------------ 63 (577)
Q Consensus 11 ~~~i~vk~~---~~~~~~~v~~~~tv~~lk~~i~~~--~~v~~~------~qkl~~-~---g~~l~d~------------ 63 (577)
+++|+|-.. +..+.|.|-.-+||..+|++|-.. .|+|.+ ..-|=+ . |++|.|+
T Consensus 11 ~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkr 90 (111)
T 4e71_A 11 PLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKR 90 (111)
T ss_dssp EEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCC
T ss_pred EEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceE
Confidence 577777753 245778876678999999999876 355544 333333 2 2344441
Q ss_pred --cccccccCCCceEEEe
Q psy7711 64 --EWDNFKLSNGSMVLLM 79 (577)
Q Consensus 64 --~l~~~~~~~~~~i~l~ 79 (577)
+|..|+|.+|++|-|+
T Consensus 91 LNTL~HY~V~dgatl~l~ 108 (111)
T 4e71_A 91 VNTLMHYNVRDGATLILS 108 (111)
T ss_dssp CCBHHHHTCCTTCEEEEE
T ss_pred ecchhhcCCCCCCEEEEE
Confidence 5667899999999876
No 174
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=49.72 E-value=10 Score=39.94 Aligned_cols=31 Identities=16% Similarity=0.159 Sum_probs=28.5
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCceEE
Q psy7711 24 EVDVDTDEEPMLFKAQLYELTGVQIDRQKVM 54 (577)
Q Consensus 24 ~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~ 54 (577)
.+.|-.+.|+.+||++|++.+|+|+++|||-
T Consensus 39 ~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW 69 (530)
T 2ylm_A 39 VFKVLKNSSLAEFVQSLSQTMGFPQDQIRLW 69 (530)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTSCGGGEEEE
T ss_pred eEEEcCcCCHHHHHHHHHHHhCcCcccEEEE
Confidence 4678888999999999999999999999985
No 175
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=49.59 E-value=43 Score=26.45 Aligned_cols=73 Identities=8% Similarity=0.043 Sum_probs=50.5
Q ss_pred CceEEEEEEeCCeEE-EEEeCCCCCHHHHHHHHHHHhCCCCCCceEE---ecC--CccCCc-cccccccCCCceEEEecc
Q psy7711 9 PHTYIVKVKWGKETF-EVDVDTDEEPMLFKAQLYELTGVQIDRQKVM---CKG--ATLKND-EWDNFKLSNGSMVLLMGS 81 (577)
Q Consensus 9 ~~~~~i~vk~~~~~~-~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~---~~g--~~l~d~-~l~~~~~~~~~~i~l~gs 81 (577)
...+-..|=....+| ++.+..+.|+.+++..+.++.+...+.++|. +.| ..|+++ .--.-.+.-+..|++--.
T Consensus 7 sD~i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~k 86 (104)
T 1wgy_A 7 GEEIFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRK 86 (104)
T ss_dssp SSCCCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEEC
T ss_pred CCceEEEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 334445555555444 7888889999999999999999888788886 456 345655 333334555677776644
No 176
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=49.17 E-value=15 Score=39.89 Aligned_cols=41 Identities=17% Similarity=0.174 Sum_probs=35.8
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCcc
Q psy7711 20 KETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATL 60 (577)
Q Consensus 20 ~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l 60 (577)
.+.+.+.+.++.|+.+|+..|++.||||++.|-+++.++..
T Consensus 321 ~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~ 361 (676)
T 3qa8_A 321 GRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLA 361 (676)
T ss_dssp SCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCC
T ss_pred cccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCC
Confidence 35567889999999999999999999999999999876543
No 177
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=48.37 E-value=15 Score=31.90 Aligned_cols=30 Identities=10% Similarity=0.071 Sum_probs=24.9
Q ss_pred ceEEEEEEeCCeEEEEEeCCCCCHHHHHHH
Q psy7711 10 HTYIVKVKWGKETFEVDVDTDEEPMLFKAQ 39 (577)
Q Consensus 10 ~~~~i~vk~~~~~~~~~v~~~~tv~~lk~~ 39 (577)
+.|+|++.-+|+.+.++++++.|+.++=..
T Consensus 2 ~~~~i~~~vNG~~~~~~v~~~~tLLd~LR~ 31 (166)
T 1n62_A 2 AKAHIELTINGHPVEALVEPRTLLIHFIRE 31 (166)
T ss_dssp -CEEEEEEETTEEEEEEECTTCBHHHHHHH
T ss_pred CCceEEEEECCEEEEEecCCCCcHHHHHHH
Confidence 346788889999999999999999986554
No 178
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=48.23 E-value=22 Score=26.28 Aligned_cols=53 Identities=11% Similarity=0.126 Sum_probs=34.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhC-----CCCCCceEEecCCccCCccccccccCCCceEEEe
Q psy7711 22 TFEVDVDTDEEPMLFKAQLYELTG-----VQIDRQKVMCKGATLKNDEWDNFKLSNGSMVLLM 79 (577)
Q Consensus 22 ~~~~~v~~~~tv~~lk~~i~~~~~-----v~~~~qkl~~~g~~l~d~~l~~~~~~~~~~i~l~ 79 (577)
...++ ....||.+|.+.+..... ++..+-.+..+|.....+ .-|++|+.|.++
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~~----~~l~~gD~V~i~ 75 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSFD----HPLTDGDEVAFF 75 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCTT----CBCCTTCEEEEE
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCCC----CCCCCCCEEEEe
Confidence 34555 456799999999875431 222333466788766433 358999999887
No 179
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=48.20 E-value=17 Score=26.72 Aligned_cols=53 Identities=15% Similarity=0.189 Sum_probs=37.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCc--eEEecCCccCCccccccccCCCceEEEe
Q psy7711 22 TFEVDVDTDEEPMLFKAQLYELTGVQIDRQ--KVMCKGATLKNDEWDNFKLSNGSMVLLM 79 (577)
Q Consensus 22 ~~~~~v~~~~tv~~lk~~i~~~~~v~~~~q--kl~~~g~~l~d~~l~~~~~~~~~~i~l~ 79 (577)
...+++....||.+|.+++..... ...+- .+..+|+....+ ..|++|+.|-++
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~----~~L~~gD~V~i~ 71 (77)
T 2q5w_D 17 QEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS----DFIQPNDTVALI 71 (77)
T ss_dssp EEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT----SEECTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCC----CCcCCCCEEEEE
Confidence 456677777899999999877641 01223 566788776544 458999999887
No 180
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=45.64 E-value=18 Score=31.34 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=24.6
Q ss_pred eEEEEEEeCCeEEEEEeCCCCCHHHHHHH
Q psy7711 11 TYIVKVKWGKETFEVDVDTDEEPMLFKAQ 39 (577)
Q Consensus 11 ~~~i~vk~~~~~~~~~v~~~~tv~~lk~~ 39 (577)
.+.|++..+|+.+.++++++.|+.++=..
T Consensus 3 ~~~i~~~vNG~~~~~~v~~~~tLLd~LR~ 31 (163)
T 1ffv_A 3 KKIITVNVNGKAQEKAVEPRTLLIHFLRE 31 (163)
T ss_dssp CEEEEEEETTEEEEEEECTTCBHHHHHHH
T ss_pred CceEEEEECCEEEEEecCCCCcHHHHHHh
Confidence 46788888999999999999999986554
No 181
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=45.08 E-value=16 Score=31.47 Aligned_cols=29 Identities=3% Similarity=0.104 Sum_probs=25.1
Q ss_pred ceEEEEEEeCCeEEEEEeCCCCCHHHHHH
Q psy7711 10 HTYIVKVKWGKETFEVDVDTDEEPMLFKA 38 (577)
Q Consensus 10 ~~~~i~vk~~~~~~~~~v~~~~tv~~lk~ 38 (577)
..|.|+++-+|+.+.++++++.|+.++=.
T Consensus 2 ~~~~i~~~vNG~~~~v~v~p~~tLLd~LR 30 (160)
T 3hrd_D 2 NKITINLNLNGEARSIVTEPNKRLLDLLR 30 (160)
T ss_dssp CCEEEEEEETTEEEEEEECSSSBHHHHHH
T ss_pred CcceEEEEECCEEEEEecCCCCCHHHHHH
Confidence 45789999999999999999999998743
No 182
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=44.85 E-value=10 Score=28.17 Aligned_cols=48 Identities=13% Similarity=0.214 Sum_probs=34.9
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCceEEecCCccCCccccccccCCCceEEEe
Q psy7711 24 EVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKNDEWDNFKLSNGSMVLLM 79 (577)
Q Consensus 24 ~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~~g~~l~d~~l~~~~~~~~~~i~l~ 79 (577)
.++++...||.+|.+++ ++++++-.+..+|+.+..+ .-|++|+.|-++
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~----~~L~dGD~V~i~ 71 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED----DEVKDGDFVEVI 71 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS----SCCCSSCCCBCS
T ss_pred EEECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC----CCcCCCCEEEEE
Confidence 34566678999998775 4677766677888877654 458889888765
No 183
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=44.65 E-value=47 Score=25.20 Aligned_cols=43 Identities=14% Similarity=0.002 Sum_probs=29.7
Q ss_pred eEEEEEEeC--CeEEEEEeCCC-CCHHHHHHHHHHHhCCCCCCceE
Q psy7711 11 TYIVKVKWG--KETFEVDVDTD-EEPMLFKAQLYELTGVQIDRQKV 53 (577)
Q Consensus 11 ~~~i~vk~~--~~~~~~~v~~~-~tv~~lk~~i~~~~~v~~~~qkl 53 (577)
|-.|.-|+. ++...|.++.. .+|.+||.+|....+.-...--|
T Consensus 6 mS~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL 51 (86)
T 2c7h_A 6 MSCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDL 51 (86)
T ss_dssp BEEEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEE
T ss_pred eeEEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccE
Confidence 445666654 44457999866 69999999999987764333333
No 184
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=43.50 E-value=35 Score=26.28 Aligned_cols=38 Identities=11% Similarity=0.147 Sum_probs=33.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEE-ecCC
Q psy7711 21 ETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVM-CKGA 58 (577)
Q Consensus 21 ~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~-~~g~ 58 (577)
..+.+.|++.+|=-++|++|+.+++|.+..-.-+ .+|+
T Consensus 22 n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK 60 (92)
T 3tve_T 22 GKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGK 60 (92)
T ss_dssp TEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCc
Confidence 5789999999999999999999999999887754 5664
No 185
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=43.26 E-value=1.1e+02 Score=23.64 Aligned_cols=65 Identities=15% Similarity=0.155 Sum_probs=49.6
Q ss_pred eEEEEEEeCC----eEEEEEeCCCCCHHHHHHHHHHHhCCC----------CCCceEEecCCccCCc-cccccccCCCce
Q psy7711 11 TYIVKVKWGK----ETFEVDVDTDEEPMLFKAQLYELTGVQ----------IDRQKVMCKGATLKND-EWDNFKLSNGSM 75 (577)
Q Consensus 11 ~~~i~vk~~~----~~~~~~v~~~~tv~~lk~~i~~~~~v~----------~~~qkl~~~g~~l~d~-~l~~~~~~~~~~ 75 (577)
.++|.|...+ ....+.|..+..|+-+=.+|-+..+++ |.+++- +++-. +|..|||.++..
T Consensus 19 eL~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~W-----Llkt~~tLDkygiqADa~ 93 (102)
T 2kmc_A 19 ELVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCW-----LLKTHWTLDKCGVQADAN 93 (102)
T ss_dssp EEEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEE-----ECCTTSBHHHHTCCTTSC
T ss_pred EEEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchh-----hhhhhhhhhhhceeeeee
Confidence 4788888733 446899999999999999998887766 334443 34555 899999999999
Q ss_pred EEEec
Q psy7711 76 VLLMG 80 (577)
Q Consensus 76 i~l~g 80 (577)
+....
T Consensus 94 L~ftp 98 (102)
T 2kmc_A 94 LLFTP 98 (102)
T ss_dssp EEEEE
T ss_pred eeccC
Confidence 88764
No 186
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=42.45 E-value=96 Score=24.05 Aligned_cols=66 Identities=11% Similarity=0.063 Sum_probs=47.9
Q ss_pred eEEEEEEe--CCe--EEEEEeCCCCCHHHHHHHHHH---HhCCCCCCceEEecCCccCCccccccccCCCceEEEec
Q psy7711 11 TYIVKVKW--GKE--TFEVDVDTDEEPMLFKAQLYE---LTGVQIDRQKVMCKGATLKNDEWDNFKLSNGSMVLLMG 80 (577)
Q Consensus 11 ~~~i~vk~--~~~--~~~~~v~~~~tv~~lk~~i~~---~~~v~~~~qkl~~~g~~l~d~~l~~~~~~~~~~i~l~g 80 (577)
+|.|.|-+ ..+ .+.++++...||.++=+++.- ...|.....++..+|+..+.+ .-|++|+.|-+.-
T Consensus 12 ~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~~d----~~L~dGDRVEIyr 84 (97)
T 2hj1_A 12 QINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIKLT----DVLKEGDRIEIYR 84 (97)
T ss_dssp EEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCCTT----CBCCTTCEEEECC
T ss_pred eEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECCCC----ccCCCCCEEEEEe
Confidence 57788875 343 346889899999998777643 234556678888999888744 2489999998873
No 187
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=42.03 E-value=1.2e+02 Score=23.60 Aligned_cols=43 Identities=9% Similarity=-0.059 Sum_probs=35.7
Q ss_pred CCCceEEEEEEeCCeEEEEEeCC--CCCHHHHHHHHHHHhCCCCC
Q psy7711 7 KPPHTYIVKVKWGKETFEVDVDT--DEEPMLFKAQLYELTGVQID 49 (577)
Q Consensus 7 ~~~~~~~i~vk~~~~~~~~~v~~--~~tv~~lk~~i~~~~~v~~~ 49 (577)
+|..++.++|-+.|+.+.+.|+. +.|..+|.+.+...+|+..-
T Consensus 10 ~m~~~v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~~~ 54 (101)
T 1wj6_A 10 SMEPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNTI 54 (101)
T ss_dssp SSCSCEEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCSSB
T ss_pred ccCccEEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCCce
Confidence 35567899999999888877754 78999999999999998744
No 188
>3o65_A Putative ataxin-3-like protein; papain-like fold, hydrolase-protein complex; 2.70A {Homo sapiens} PDB: 2aga_A 1yzb_A 2jri_A 2dos_A
Probab=40.48 E-value=20 Score=31.75 Aligned_cols=32 Identities=13% Similarity=0.235 Sum_probs=26.5
Q ss_pred EeEEEEeecCCCCCCceEEEEECCCCcEEEEeCCccee
Q psy7711 524 LQAVLTHKGRTSSSGHYVAWVKKPNGTWIKCDDDKVYP 561 (577)
Q Consensus 524 L~aVI~H~G~s~~~GHY~a~vr~~~~~W~~~nD~~V~~ 561 (577)
..|+|++..+ |++|..|- ++.||-+|=..-.+
T Consensus 110 ~~~FI~N~~~-----HWfaiRki-gg~WyNLdS~l~~P 141 (191)
T 3o65_A 110 ERSFICNYKQ-----HWFTIRKF-GKHWFNLNSLLAGP 141 (191)
T ss_dssp CCEEEEEESS-----CEEEEEEE-TTEEEECCTTSSSC
T ss_pred hhhhhhcccc-----ceeeEEec-CCEEEEccCCCCCC
Confidence 3789999875 99999998 89999999765444
No 189
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.31 E-value=1.3e+02 Score=23.07 Aligned_cols=70 Identities=6% Similarity=0.088 Sum_probs=46.4
Q ss_pred ceEEEEEEeCC--eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEEe--cCCccCCc-cccccccCCCceEEEeccccC
Q psy7711 10 HTYIVKVKWGK--ETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMC--KGATLKND-EWDNFKLSNGSMVLLMGSKEE 84 (577)
Q Consensus 10 ~~~~i~vk~~~--~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~~--~g~~l~d~-~l~~~~~~~~~~i~l~gs~~~ 84 (577)
+.--++|.... .++-|-.. ++.+|+.+..+.++++.+--+|.. .|..+.|+ -+.. +.++..+|++...+.
T Consensus 8 ~~kpfkV~~~~Rs~k~GV~A~---sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~t--Lp~nT~lmvL~~ge~ 82 (91)
T 2eel_A 8 PARPFRVSNHDRSSRRGVMAS---SLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQT--LGDNTHFMILEKGQK 82 (91)
T ss_dssp CCEEEEEECTTSCCCEEEEES---SHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTT--SCSSEEEEEEETTCC
T ss_pred CCCCEEEecCCCCeEEeEEcC---CHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhh--CCCCCEEEEEcCCCc
Confidence 33345555444 44555554 799999999999999866566643 58888766 4443 347777777766554
No 190
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=36.29 E-value=40 Score=26.17 Aligned_cols=36 Identities=17% Similarity=0.202 Sum_probs=31.9
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCceEE-ecCC
Q psy7711 23 FEVDVDTDEEPMLFKAQLYELTGVQIDRQKVM-CKGA 58 (577)
Q Consensus 23 ~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~-~~g~ 58 (577)
|.+.|++.+|=-++|++|+.++||.+..-.-+ ..|+
T Consensus 25 y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~~gK 61 (95)
T 2zjr_Q 25 YSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGK 61 (95)
T ss_dssp CEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCCC
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEeCCc
Confidence 89999999999999999999999999987754 5664
No 191
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=35.99 E-value=79 Score=24.58 Aligned_cols=39 Identities=13% Similarity=0.019 Sum_probs=34.5
Q ss_pred eEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q psy7711 11 TYIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQID 49 (577)
Q Consensus 11 ~~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~ 49 (577)
.++|+.-++|++.-|.++......+|..++.+.+|-+.+
T Consensus 8 dvRiKfE~~GEkRIi~f~RPv~f~eL~~Kv~~~fGq~ld 46 (103)
T 2cu1_A 8 DVRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFGQSMD 46 (103)
T ss_dssp EEEEEEEETTEEEEEEEESSCCHHHHHHHHHHHHSSCEE
T ss_pred cEEEEEEecCeEEEEeccCCccHHHHHHHHHHHhCCeee
Confidence 477777799999999999999999999999999986543
No 192
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=35.40 E-value=45 Score=25.26 Aligned_cols=34 Identities=12% Similarity=0.131 Sum_probs=30.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEE
Q psy7711 21 ETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVM 54 (577)
Q Consensus 21 ~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~ 54 (577)
.++.+.|++.+|=-++|++++.++||.+..-.-+
T Consensus 23 n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~ 56 (85)
T 1vq8_S 23 NKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQ 56 (85)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCCceEEEee
Confidence 5689999999999999999999999999876644
No 193
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=35.33 E-value=1.3e+02 Score=24.31 Aligned_cols=69 Identities=14% Similarity=0.275 Sum_probs=44.3
Q ss_pred eEEEEEEeC----CeEEEEEeCCCCCHHHHHHHHHHH--hCCCCC------CceEEe-cCC----ccCCc----------
Q psy7711 11 TYIVKVKWG----KETFEVDVDTDEEPMLFKAQLYEL--TGVQID------RQKVMC-KGA----TLKND---------- 63 (577)
Q Consensus 11 ~~~i~vk~~----~~~~~~~v~~~~tv~~lk~~i~~~--~~v~~~------~qkl~~-~g~----~l~d~---------- 63 (577)
+++|+|-+. ...+.|.|-.-+||..+|++|-.. .|.|.+ ..-|=+ .|. +|.|.
T Consensus 13 ~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~w 92 (117)
T 4e74_A 13 TLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDW 92 (117)
T ss_dssp EEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---C
T ss_pred EEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcc
Confidence 567777652 233677776678999999999876 355544 223322 231 23331
Q ss_pred ----cccccccCCCceEEEe
Q psy7711 64 ----EWDNFKLSNGSMVLLM 79 (577)
Q Consensus 64 ----~l~~~~~~~~~~i~l~ 79 (577)
+|..|+|.+|++|-|+
T Consensus 93 krLNTL~HY~V~dgatl~l~ 112 (117)
T 4e74_A 93 KRLNTLAHYQVPDGSVVALV 112 (117)
T ss_dssp CCCCBHHHHTCCTTCEEEEE
T ss_pred eEeccccccCCCCCCEEEEE
Confidence 5667899999999886
No 194
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=35.25 E-value=1.4e+02 Score=22.46 Aligned_cols=65 Identities=14% Similarity=0.106 Sum_probs=40.5
Q ss_pred eEEEEEEeCCeEEEEEeC-CCCCHHHHHHHHHHH----hCC-CCCCceEE---e-cCCccCCc-cccccccCCCceE
Q psy7711 11 TYIVKVKWGKETFEVDVD-TDEEPMLFKAQLYEL----TGV-QIDRQKVM---C-KGATLKND-EWDNFKLSNGSMV 76 (577)
Q Consensus 11 ~~~i~vk~~~~~~~~~v~-~~~tv~~lk~~i~~~----~~v-~~~~qkl~---~-~g~~l~d~-~l~~~~~~~~~~i 76 (577)
.|+|+|..++..+.|... ...||.+|=++--.. .+- |...-.+. + .|++|+.| .+.+. +.++..|
T Consensus 2 ~MKvtV~fg~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~k~~~~~v~V~~l~~~~ggiLD~DD~l~dV-ldD~e~i 77 (85)
T 2ns5_A 2 EFKVTVCFGRTRVDVPCGDGRMKVFSLIQQAVTRYRKAVAKDPNYWIQVHRLEHGDGGILDLDDILCDV-ADDKDRL 77 (85)
T ss_dssp CEEEEEEETTEEEEEEESSSCCCHHHHHHHHHHHHHHHTTCCTTSCEEEEEEECSSSCEECTTSCHHHH-SCTTEEE
T ss_pred ccEEEEEECCEEEEEECCCCcccHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEeCCCcEeCcccchhhh-ccCcceE
Confidence 489999999999999984 446999886654333 333 22222222 4 46788755 55443 4455544
No 195
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=34.55 E-value=38 Score=29.39 Aligned_cols=31 Identities=3% Similarity=-0.146 Sum_probs=26.2
Q ss_pred CceEEEEEEeCCeEEEEEeCCCCCHHHHHHH
Q psy7711 9 PHTYIVKVKWGKETFEVDVDTDEEPMLFKAQ 39 (577)
Q Consensus 9 ~~~~~i~vk~~~~~~~~~v~~~~tv~~lk~~ 39 (577)
...|.|++..+|+.+.++++++.|+.++=..
T Consensus 7 ~~~m~i~~~ing~~~~~~v~~~~tlL~~Lr~ 37 (168)
T 1t3q_A 7 SQLMRISATINGKPRVFYVEPRMHLADALRE 37 (168)
T ss_dssp CCCEEEEEEETTEEEEEEECTTSBHHHHHHH
T ss_pred CCcceEEEEECCEEEEEecCCCCcHHHHHHh
Confidence 3458899999999999999999999886554
No 196
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=34.25 E-value=1.9e+02 Score=23.55 Aligned_cols=69 Identities=17% Similarity=0.250 Sum_probs=43.0
Q ss_pred eEEEEEEe---C-------CeEEEEEeCCCCCHHHHHHHHHHH----hCCCCCC----ceEEe-cC---Ccc--------
Q psy7711 11 TYIVKVKW---G-------KETFEVDVDTDEEPMLFKAQLYEL----TGVQIDR----QKVMC-KG---ATL-------- 60 (577)
Q Consensus 11 ~~~i~vk~---~-------~~~~~~~v~~~~tv~~lk~~i~~~----~~v~~~~----qkl~~-~g---~~l-------- 60 (577)
+++++|-. . ...+.|.|-.-+||..+|++|-.. .|+|-.. .-|=+ .| .+|
T Consensus 19 tLtL~vv~~~~~~~~~~~~~~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~ 98 (126)
T 3kuz_A 19 TVALNVVFEKIPENESADVCRNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSV 98 (126)
T ss_dssp EEEEEEEECCCTTSSCSCSCCEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCC
T ss_pred EEEEEEEeeccCCCcCcCcCCceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcce
Confidence 46677665 2 135778877778999999998654 3777642 11111 11 111
Q ss_pred --CCc-----cccccccCCCceEEEe
Q psy7711 61 --KND-----EWDNFKLSNGSMVLLM 79 (577)
Q Consensus 61 --~d~-----~l~~~~~~~~~~i~l~ 79 (577)
.++ +|..|+|.+|++|-|+
T Consensus 99 ~~e~~wkrLNTL~HY~V~Dgatlal~ 124 (126)
T 3kuz_A 99 ILEDGITKLNTIGHYEISNGSTIKVF 124 (126)
T ss_dssp BCTTSCBCCCBTGGGTCCTTCEEEEE
T ss_pred EecCCeeEeccccccCCCCCCEEEEe
Confidence 121 5667889999998775
No 197
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=32.20 E-value=1.5e+02 Score=22.42 Aligned_cols=40 Identities=10% Similarity=0.056 Sum_probs=35.0
Q ss_pred ceEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q psy7711 10 HTYIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQID 49 (577)
Q Consensus 10 ~~~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~ 49 (577)
..++|+.-+.|++.-|.+.......+|..++...+|-+.+
T Consensus 3 ~dvRIKfE~~gEKRIi~f~RPvkf~dl~qkv~~afGq~ld 42 (94)
T 2jrh_A 3 SDVRIKFEHNGERRIIAFSRPVKYEDVEHKVTTVFGQPLD 42 (94)
T ss_dssp CCEEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHCSSEE
T ss_pred CceEEEEEecCceEEEecCCCccHHHHHHHHHHHhCCeee
Confidence 3578888899999999999999999999999999985543
No 198
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=32.06 E-value=55 Score=31.45 Aligned_cols=44 Identities=16% Similarity=0.222 Sum_probs=33.8
Q ss_pred CCCCCCceEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCC
Q psy7711 4 FKGKPPHTYIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQ 47 (577)
Q Consensus 4 ~~~~~~~~~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~ 47 (577)
++-++...+.+.|...++.+.++|++.+|+.+|=.+|....|+.
T Consensus 15 ~~~~~~~~~~~~V~lldg~~~~~v~~~t~~~el~~~v~~~l~L~ 58 (314)
T 1h4r_A 15 LKRKQPKTFTVRIVTMDAEMEFNCEMKWKGKDLFDLVCRTLGLR 58 (314)
T ss_dssp ------CEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCC
T ss_pred ccCCCCCeeEEEEEeCCceEEEEeCCCCcHHHHHHHHHHHhCCC
Confidence 34445567889998765578899999999999999999999986
No 199
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=30.71 E-value=1.9e+02 Score=22.51 Aligned_cols=67 Identities=10% Similarity=0.187 Sum_probs=43.2
Q ss_pred EEEEEeCC--eEEEEEeCCCCCHHHHHHHHHHHhCCCCC--CceEE--ecCCccCCc-cccccccCCCceEEEeccccC
Q psy7711 13 IVKVKWGK--ETFEVDVDTDEEPMLFKAQLYELTGVQID--RQKVM--CKGATLKND-EWDNFKLSNGSMVLLMGSKEE 84 (577)
Q Consensus 13 ~i~vk~~~--~~~~~~v~~~~tv~~lk~~i~~~~~v~~~--~qkl~--~~g~~l~d~-~l~~~~~~~~~~i~l~gs~~~ 84 (577)
-++|.... +++=|-.. ++.+|+.+....++++.. --+|. -.|..+.|+ -+.. +.++..+|++...+.
T Consensus 20 PfkV~~~~~r~k~GV~A~---SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~t--Lp~nT~lmvL~~ge~ 93 (100)
T 1f2r_I 20 PCLLRRNHSRDQHGVAAS---SLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLC--LPSNTKFVALACNEK 93 (100)
T ss_dssp EEEEEETTEEEEEEEEES---SHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSS--SCSCCEEEEECSSSC
T ss_pred CEEEeeCCCccEEeEEcC---CHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhc--CCCCCEEEEEcCCCc
Confidence 45666333 23444443 899999999999999864 34543 368888766 4443 447777777765543
No 200
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=30.26 E-value=2.2e+02 Score=23.18 Aligned_cols=69 Identities=12% Similarity=0.238 Sum_probs=44.4
Q ss_pred eEEEEEEeC---CeEEEEEeCCCCCHHHHHHHHHHH--hCCCCC------CceEEe-cC---C-ccCC---------c--
Q psy7711 11 TYIVKVKWG---KETFEVDVDTDEEPMLFKAQLYEL--TGVQID------RQKVMC-KG---A-TLKN---------D-- 63 (577)
Q Consensus 11 ~~~i~vk~~---~~~~~~~v~~~~tv~~lk~~i~~~--~~v~~~------~qkl~~-~g---~-~l~d---------~-- 63 (577)
+++++|-+. +..+.|.|=.-+||..+|++|-+. .|+|-+ ..-|=+ .| + +|.| .
T Consensus 4 ~ltl~~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~k 83 (127)
T 3h6n_A 4 PRNLNVSFQGCGMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRK 83 (127)
T ss_dssp EEEEEEEEETSCCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEE
T ss_pred EEEEEEEecCCCCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCcee
Confidence 355555542 345777776678999999999876 355543 333333 22 1 1333 1
Q ss_pred ---cccccccCCCceEEEe
Q psy7711 64 ---EWDNFKLSNGSMVLLM 79 (577)
Q Consensus 64 ---~l~~~~~~~~~~i~l~ 79 (577)
+|..|+|.+|++|-|+
T Consensus 84 rLNTL~HY~V~dgatv~l~ 102 (127)
T 3h6n_A 84 KLNTLAHYKIPEGASLAMS 102 (127)
T ss_dssp CCCBTTTTTCCTTCEEEEE
T ss_pred EeccccccCCCCCCEEEEE
Confidence 5677899999999887
No 201
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=29.32 E-value=92 Score=26.90 Aligned_cols=55 Identities=15% Similarity=0.131 Sum_probs=37.3
Q ss_pred EEEeCCCCCHHHHHHHHHHHhC-CC---------CCCceEEecCCccCCccccccccCCCceEEEe
Q psy7711 24 EVDVDTDEEPMLFKAQLYELTG-VQ---------IDRQKVMCKGATLKNDEWDNFKLSNGSMVLLM 79 (577)
Q Consensus 24 ~~~v~~~~tv~~lk~~i~~~~~-v~---------~~~qkl~~~g~~l~d~~l~~~~~~~~~~i~l~ 79 (577)
.++++. .||.+|.+.+..... +. ...-.+..+|.........+..|++|+.|.++
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~~~dt~L~dGDeVai~ 81 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQGLSTPLSPGATLDLF 81 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTTGGGCBCCTTCEEEEE
T ss_pred eEEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcCCCccCCCCCCEEEEE
Confidence 455665 899999999987641 10 12234557787665544446679999999998
No 202
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.59 E-value=88 Score=23.68 Aligned_cols=34 Identities=15% Similarity=0.234 Sum_probs=30.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEE
Q psy7711 21 ETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVM 54 (577)
Q Consensus 21 ~~~~~~v~~~~tv~~lk~~i~~~~~v~~~~qkl~ 54 (577)
.++.+.|+..+|=-++|++++.+++|.+..-.-+
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl 57 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTL 57 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEe
Confidence 5789999999999999999999999999877654
No 203
>2ww6_A Fibritin, T4 fibritin; D-amino acids, chaperone, viral protein; HET: DPN PG4; 0.98A {Enterobacteria phage T4} PDB: 1rfo_A 1u0p_A 2kbl_A 2ww7_A*
Probab=24.75 E-value=29 Score=19.74 Aligned_cols=14 Identities=36% Similarity=0.795 Sum_probs=11.4
Q ss_pred EEEECCCCcEEEEeC
Q psy7711 542 AWVKKPNGTWIKCDD 556 (577)
Q Consensus 542 a~vr~~~~~W~~~nD 556 (577)
+|||. ++.|...++
T Consensus 12 ~Yvr~-dg~WV~l~t 25 (27)
T 2ww6_A 12 AYVRK-FGEWVLLST 25 (27)
T ss_dssp EEEEE-TTEEEEGGG
T ss_pred eeEEE-cCeEEEccc
Confidence 78998 899987654
No 204
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}
Probab=24.36 E-value=38 Score=28.89 Aligned_cols=31 Identities=10% Similarity=0.152 Sum_probs=26.4
Q ss_pred ceEEEEEEeCCeEEEEEeCCCC---CHHHHHHHH
Q psy7711 10 HTYIVKVKWGKETFEVDVDTDE---EPMLFKAQL 40 (577)
Q Consensus 10 ~~~~i~vk~~~~~~~~~v~~~~---tv~~lk~~i 40 (577)
..|+|.++.++.++.+++..+. |..+|.++|
T Consensus 28 ~~~~I~i~~~~~~~~a~L~D~~aP~Ta~~f~~~L 61 (153)
T 2nnz_A 28 VEMRLRIRFESAECEVELYEEWAPETVRAIADAL 61 (153)
T ss_dssp SCCCEEEEETTEEEEECCCTTSCHHHHHHHHHTC
T ss_pred CCeEEEEEECCEEEEEEEcCCCCHHHHHHHHHhC
Confidence 3589999999999999998888 888887764
No 205
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=23.49 E-value=1.2e+02 Score=28.52 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=32.8
Q ss_pred EEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC
Q psy7711 12 YIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQI 48 (577)
Q Consensus 12 ~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~ 48 (577)
|.|.|...++++.+.|++.+|+.++=.+|.+..|+..
T Consensus 2 i~~~V~l~d~~~~~~v~~~tt~~el~~~v~~~l~L~e 38 (294)
T 1ef1_A 2 ISVRVTTMDAELEFAIQPNTTGKQLFDQVVKTIGLRE 38 (294)
T ss_dssp EEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHTCCC
T ss_pred EEEEEEECCceEEEEECCCCcHHHHHHHHHHHcCCCC
Confidence 6788887777889999999999999999999999864
No 206
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=22.57 E-value=95 Score=25.78 Aligned_cols=40 Identities=30% Similarity=0.501 Sum_probs=30.5
Q ss_pred EeEEEEeecCCCCCCceEEEEECCCCcEEEEeCCcceec--Chhhhh
Q psy7711 524 LQAVLTHKGRTSSSGHYVAWVKKPNGTWIKCDDDKVYPI--SEEEVL 568 (577)
Q Consensus 524 L~aVI~H~G~s~~~GHY~a~vr~~~~~W~~~nD~~V~~v--~~~~V~ 568 (577)
.+|-|.-.|. +|-+-++-- ...||.+||+.+.+. +.++|+
T Consensus 109 fhAgIflkg~----eHAVFa~~T-S~GWyaiDDe~fypwtPdpsdVL 150 (167)
T 1qmy_A 109 FHAGIFLKGQ----EHAVFACVT-SNGWYAIDDEDFYPWTPDPSDVL 150 (167)
T ss_dssp EEEEEEEETT----TEEEEEECC-TTSSEEEETTEEEECCCCGGGEE
T ss_pred hhhheeecCC----CceEEEEEc-cCceEEecccccccCCCChhhEE
Confidence 4666666775 698887776 788999999999986 455554
No 207
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=22.44 E-value=21 Score=27.97 Aligned_cols=58 Identities=7% Similarity=0.149 Sum_probs=39.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCC-------CC----CceEEecC-CccCC------c-cccccccCCCceEEEe
Q psy7711 22 TFEVDVDTDEEPMLFKAQLYELTGVQ-------ID----RQKVMCKG-ATLKN------D-EWDNFKLSNGSMVLLM 79 (577)
Q Consensus 22 ~~~~~v~~~~tv~~lk~~i~~~~~v~-------~~----~qkl~~~g-~~l~d------~-~l~~~~~~~~~~i~l~ 79 (577)
...|+|+++.|+.+|-..|.+..... .. ...|...+ ..|.. + +|.++|+.+|+-|++.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 35789999999999999998843221 11 33343344 23433 1 5789999999999884
No 208
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=22.33 E-value=2.4e+02 Score=21.58 Aligned_cols=39 Identities=13% Similarity=0.019 Sum_probs=34.5
Q ss_pred eEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q psy7711 11 TYIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQID 49 (577)
Q Consensus 11 ~~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~ 49 (577)
.++|+.-+.|++.-|.+.......+|..++...+|-+.+
T Consensus 20 dvRIKfE~~gEkRIi~f~RPv~f~el~~kv~~afGq~ld 58 (100)
T 2npt_B 20 DVRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFGQSMD 58 (100)
T ss_dssp CEEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHTSCEE
T ss_pred ceEEEEEecCceEEEecCCCccHHHHHHHHHHHhCCeee
Confidence 478888899999999999999999999999999985543
No 209
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=22.08 E-value=76 Score=27.22 Aligned_cols=29 Identities=10% Similarity=0.020 Sum_probs=24.1
Q ss_pred EEEEEEeCCeEEEEEeCCCCCHHHHHHHH
Q psy7711 12 YIVKVKWGKETFEVDVDTDEEPMLFKAQL 40 (577)
Q Consensus 12 ~~i~vk~~~~~~~~~v~~~~tv~~lk~~i 40 (577)
+.|++.-+|+.+.++++++.|+.++=..+
T Consensus 3 ~~i~~~vNG~~~~v~~~~~~tLL~~Lr~~ 31 (161)
T 1rm6_C 3 NILRLTLNGRAREDLVPDNMLLLDYLRET 31 (161)
T ss_dssp EEEEEEETTEEEEEEEETTCBHHHHHHHT
T ss_pred ceEEEEECCEEEEEecCCcCcHHHHHHHc
Confidence 45778889999999999999998876554
No 210
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=21.49 E-value=2.8e+02 Score=21.58 Aligned_cols=39 Identities=10% Similarity=0.059 Sum_probs=35.1
Q ss_pred eEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q psy7711 11 TYIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQID 49 (577)
Q Consensus 11 ~~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~~~ 49 (577)
.++|+.-+.|++.-|.+.......+|..++...+|-+.+
T Consensus 31 dvRIKfE~~gEKRIiqf~RPvkf~dl~qkv~~afGq~ld 69 (111)
T 2c60_A 31 DVRIKFEHNGERRIIAFSRPVKYEDVEHKVTTVFGQPLD 69 (111)
T ss_dssp CEEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHSSCCE
T ss_pred ceEEEEEecCceEEEecCCCccHHHHHHHHHHHhCCeee
Confidence 588888899999999999999999999999999986654
No 211
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=21.03 E-value=40 Score=26.57 Aligned_cols=65 Identities=14% Similarity=0.093 Sum_probs=49.0
Q ss_pred EEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCC----------CCCceEEecCCccCCc-cccccccCCCceEEEec
Q psy7711 12 YIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQ----------IDRQKVMCKGATLKND-EWDNFKLSNGSMVLLMG 80 (577)
Q Consensus 12 ~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~v~----------~~~qkl~~~g~~l~d~-~l~~~~~~~~~~i~l~g 80 (577)
++|.|...+....+.|..+..|+-+=.+|-+..+++ |.+++- +++-. +|..|||..+..+....
T Consensus 27 L~V~V~d~~~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~W-----Llkt~~tLDk~giqADa~L~ftp 101 (112)
T 2lgx_A 27 LSVHVTDVNRDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTW-----LLKTHWTLDKYGIQADAKLQFTP 101 (112)
T ss_dssp EECCBTTTTBCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEE-----ECCTTSCHHHHTCCTTCBBCBBC
T ss_pred EEEEEecCCccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchh-----hhcchhhHhhhceeccccceecC
Confidence 566666655777899999999999999999887766 344443 34555 89999999999887764
Q ss_pred c
Q psy7711 81 S 81 (577)
Q Consensus 81 s 81 (577)
.
T Consensus 102 ~ 102 (112)
T 2lgx_A 102 Q 102 (112)
T ss_dssp -
T ss_pred C
Confidence 4
Done!