RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7711
(577 letters)
>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyse bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 305
Score = 303 bits (778), Expect = 3e-99
Identities = 122/254 (48%), Positives = 169/254 (66%), Gaps = 15/254 (5%)
Query: 192 GLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDNMK 251
GL NLGNTCY+N+ +QCL++VPELR ALKN + + + ++T +LRDL++ MD K
Sbjct: 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNALRDLFDTMDK-K 59
Query: 252 ISPSISPFIMLQVLHNVFPRFADKTDDGSYMQQDANECWTEMVRMLKTALPGENEEGQDS 311
P + P LQ+L FP+FA+K + G Y QQDA ECW++++ +L LPG
Sbjct: 60 QEP-VPPIEFLQLLRMAFPQFAEKQNQGGYAQQDAEECWSQLLSVLSQKLPG------AG 112
Query: 312 AKSSFIEQYFYTIMDTELKCSESETEPPTKGTESFQQLSCYI--TTDVKYMLPGLKNKLQ 369
+K SFI+Q F ++T++KC+ES E TES +L C+I TT+V Y+ GLK L+
Sbjct: 113 SKGSFIDQLFGIELETKMKCTESPDEEEVS-TESEYKLQCHISITTEVNYLQDGLKKGLE 171
Query: 370 DQITKRSPSLDRDAVYVKTSKVSRLPAYLTIQFVRFFYKEKERINAKVLKDIKFPIEFDA 429
++I K SP+L RDA+Y KTS++SRLP YLT+QFVRFF+K + AK+L+ +KFP E D
Sbjct: 172 EEIEKHSPTLGRDAIYTKTSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKFPFELDL 231
Query: 430 YELCTP----ELQA 439
YELCTP EL A
Sbjct: 232 YELCTPSGYYELVA 245
Score = 100 bits (251), Expect = 2e-23
Identities = 38/58 (65%), Positives = 48/58 (82%), Gaps = 1/58 (1%)
Query: 518 NSGYYTLQAVLTHKGRTSSSGHYVAWVKKPN-GTWIKCDDDKVYPISEEEVLKLSGGG 574
SGYY L AV+TH+GR++ SGHYVAWV++ N G WIK DDDKV ++EE++LKLSGGG
Sbjct: 237 PSGYYELVAVITHQGRSADSGHYVAWVRRKNDGKWIKFDDDKVSEVTEEDILKLSGGG 294
Score = 90.1 bits (224), Expect = 7e-20
Identities = 34/72 (47%), Positives = 48/72 (66%), Gaps = 2/72 (2%)
Query: 114 GLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDNMK 173
GL NLGNTCY+N+ +QCL++VPELR ALKN + + + ++T +LRDL++ MD K
Sbjct: 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNALRDLFDTMDK-K 59
Query: 174 ISPSISPFIMLQ 185
P + P LQ
Sbjct: 60 QEP-VPPIEFLQ 70
>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.
Length = 313
Score = 152 bits (385), Expect = 1e-41
Identities = 72/256 (28%), Positives = 111/256 (43%), Gaps = 12/256 (4%)
Query: 190 PAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDN 249
P GL NLGNTCYMN+V+Q L ++P LR L L + +L DL+ + +
Sbjct: 3 PTGLANLGNTCYMNSVLQALFSIPPLRDYLLQNSSELINPLGSLNQLPRALADLFHALQS 62
Query: 250 M-KISPSISPFIMLQVLHNVFPRFADKTDDGSYMQQDANECWTEMVRMLKTAL-PGENEE 307
+ S+SP LQ L + P+F+ YMQQDA+E ++ L L + +
Sbjct: 63 PNSKNASVSPKNFLQALGKISPQFS------GYMQQDAHEFLLFLLDQLHEDLNSLKKRK 116
Query: 308 GQDSAKSSFIEQYFYTIMDTELKCSESETEPPTKGTESFQQLSCYITTDVKYMLPGLKNK 367
+ S I + F +++ LKC + + E T S L ++ V +L G K
Sbjct: 117 SHAAENESLITKLFQGQLESRLKCLKCKKESSTPEPFSDLSLPIEDSSSVLKLLTGNFLK 176
Query: 368 ---LQDQITKRSPSLDRDAVYVKTSKVSRLPAYLTIQFVRFFYKEKERINAKVLKDIKFP 424
L+ + P +K +SRLP L I R F K+ ++FP
Sbjct: 177 LEELEKEEKYYCPKCGGKQNAIKKLDISRLPPVLIIHLKR-FEDFNRETEKKISDRVEFP 235
Query: 425 IEFDAYELCTPELQAK 440
+E D EL+ +
Sbjct: 236 LELDLSSYLEEELEGE 251
Score = 76.7 bits (189), Expect = 3e-15
Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 514 IGSNNSGYYTLQAVLTHKGRTSSSGHYVAWVKKP-NGTWIKCDDDKVYPISEEEVLKLSG 572
G Y L AV+ H G + S GHY+A++KK W+K DD+KV ++EEEVL+ S
Sbjct: 249 EGEEPPTKYELVAVVVHSGSSLSGGHYIAYIKKREKNKWVKFDDEKVSVVTEEEVLRSSA 308
Score = 72.1 bits (177), Expect = 9e-14
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 112 PAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDN 171
P GL NLGNTCYMN+V+Q L ++P LR L L + +L DL+ + +
Sbjct: 3 PTGLANLGNTCYMNSVLQALFSIPPLRDYLLQNSSELINPLGSLNQLPRALADLFHALQS 62
Query: 172 M-KISPSISPFIMLQ 185
+ S+SP LQ
Sbjct: 63 PNSKNASVSPKNFLQ 77
>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 328
Score = 81.7 bits (202), Expect = 6e-17
Identities = 79/402 (19%), Positives = 138/402 (34%), Gaps = 108/402 (26%)
Query: 192 GLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGS---NPAQSITASLRDLYECMD 248
GL NLG TC+MN ++Q L P LR L +P ++ ++ ++++
Sbjct: 2 GLINLGATCFMNVILQALLHNPLLRNYF--LSDRHSCTCLSCSPNSCLSCAMDEIFQ--- 56
Query: 249 NMKISPSISPFIMLQVLHNVFPRFADKTDDGSYMQQDANECWTEMVRMLKTALPGENEEG 308
S SP+ + +L+ + + Y QQDA+E + ++ L T G+ E
Sbjct: 57 EFYYSGDRSPYGPINLLYLS---WKHSRNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEA 113
Query: 309 QDSAK-SSFIEQYFYTIMDTELKCSESETEPPTKGTESFQQLSCYITTDVKYMLPGLKNK 367
D + + I Q F + + + C + + F LS + K +
Sbjct: 114 NDESHCNCIIHQTFSGSLQSSVTCQRCGGV--STTVDPFLDLS--LDIPNKSTPSWALGE 169
Query: 368 LQDQITKR-SPSLDR--------DAVY-----------VKTSKVSRLPAYLTIQFVRFFY 407
T S LDR D Y K + +LP L Q RF +
Sbjct: 170 SGVSGTPTLSDCLDRFTRPEKLGDFAYKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEH 229
Query: 408 KEKERINAKVLKDIKFPIEFDAYELCTPELQAKLAPMREKFKIAEEKEAFEEFRTQYVFI 467
+ + K+ ++FP+E + + + + + +
Sbjct: 230 SLNKT-SRKIDTYVQFPLELNMTPYTSSSIGDT--------QDSNSLDP----------- 269
Query: 468 SIPMDEIYVRFGQKIYAPVGDRIQDFGVKSTEFQSRGQGSSPGRVDIGSNNSGYYTLQAV 527
D Y ++A V V G+ ++G+YT
Sbjct: 270 ----DYTY-----DLFAVV-------------------------VHKGTLDTGHYT---- 291
Query: 528 LTHKGRTSSSGHYVAWVKKPNGTWIKCDDDKVYPISEEEVLK 569
A+ ++ +G W K DD + +SEEEVLK
Sbjct: 292 --------------AYCRQGDGQWFKFDDAMITRVSEEEVLK 319
Score = 43.9 bits (104), Expect = 1e-04
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 114 GLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGS---NPAQSITASLRDLYECMD 170
GL NLG TC+MN ++Q L P LR L +P ++ ++ ++++
Sbjct: 2 GLINLGATCFMNVILQALLHNPLLRNYF--LSDRHSCTCLSCSPNSCLSCAMDEIFQ--- 56
Query: 171 NMKISPSISPFIML 184
S SP+ +
Sbjct: 57 EFYYSGDRSPYGPI 70
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl
hydrolases. They are intracellular peptidases that
remove ubiquitin molecules from polyubiquinated peptides
by cleavage of isopeptide bonds. They hydrolyse bonds
involving the carboxyl group of the C-terminal Gly
residue of ubiquitin The purpose of the
de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 255
Score = 79.8 bits (197), Expect = 1e-16
Identities = 35/163 (21%), Positives = 61/163 (37%), Gaps = 7/163 (4%)
Query: 280 SYMQQDANECWTEMVRMLKTALPGENEEGQDSAK-SSFIEQYFYTIMDTELKCSESETEP 338
QQDA+E ++ L L ++ DS+ S I F +++ + C E E
Sbjct: 19 FSEQQDAHEFLLFLLDKLHEELKKSSKRTSDSSSLKSLIHDLFGGKLESTIVCLECGHES 78
Query: 339 PTKGTESFQQLSCYITTDVKYMLP-GLKNKLQDQITKRSPSLDRD----AVYVKTSKVSR 393
+ E F L + + L L+ +++I + + K K+ +
Sbjct: 79 VSTEPELFLSLPLPVKGLPQVSLEDCLEKFFKEEILEGDNCYKCEKKKKQEATKRLKIKK 138
Query: 394 LPAYLTIQFVRFFYKEKERINAKVLKDIKFPIEFDAYELCTPE 436
LP L I RF + E K+ + FP+E D +
Sbjct: 139 LPPVLIIHLKRFSFNEDGT-KEKLNTKVSFPLELDLSPYLSEG 180
Score = 79.1 bits (195), Expect = 2e-16
Identities = 30/61 (49%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 513 DIGSNNSGYYTLQAVLTHKGRTSSSGHYVAWVKKP-NGTWIKCDDDKVYPISEEEVLKLS 571
N S Y L AV+ H G ++ SGHYVA+VK P +G W K +DDKV +SEEEVL+
Sbjct: 184 SDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEVLEFG 243
Query: 572 G 572
Sbjct: 244 S 244
Score = 51.7 bits (124), Expect = 3e-07
Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 16/89 (17%)
Query: 192 GLNNLGNTCYMNAVIQCLKTVPE------------LRKALKNLKGGLQPG----SNPAQS 235
GLNNLGNTCY+N+V+Q L + + L + LK S
Sbjct: 1 GLNNLGNTCYLNSVLQALFSEQQDAHEFLLFLLDKLHEELKKSSKRTSDSSSLKSLIHDL 60
Query: 236 ITASLRDLYECMDNMKISPSISPFIMLQV 264
L C++ S S P + L +
Sbjct: 61 FGGKLESTIVCLECGHESVSTEPELFLSL 89
Score = 51.3 bits (123), Expect = 4e-07
Identities = 24/88 (27%), Positives = 33/88 (37%), Gaps = 16/88 (18%)
Query: 114 GLNNLGNTCYMNAVIQCLKTVPE------------LRKALKNLKGGLQPG----SNPAQS 157
GLNNLGNTCY+N+V+Q L + + L + LK S
Sbjct: 1 GLNNLGNTCYLNSVLQALFSEQQDAHEFLLFLLDKLHEELKKSSKRTSDSSSLKSLIHDL 60
Query: 158 ITASLRDLYECMDNMKISPSISPFIMLQ 185
L C++ S S P + L
Sbjct: 61 FGGKLESTIVCLECGHESVSTEPELFLS 88
>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 304
Score = 71.9 bits (177), Expect = 8e-14
Identities = 25/53 (47%), Positives = 30/53 (56%)
Query: 516 SNNSGYYTLQAVLTHKGRTSSSGHYVAWVKKPNGTWIKCDDDKVYPISEEEVL 568
++ Y L AVL H G + SGHY +VK NG W DD KV P+S E VL
Sbjct: 242 NDGPLKYKLYAVLVHSGFSPHSGHYYCYVKSSNGKWYNMDDSKVSPVSIETVL 294
Score = 70.0 bits (172), Expect = 5e-13
Identities = 61/261 (23%), Positives = 94/261 (36%), Gaps = 50/261 (19%)
Query: 190 PAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPA-------QSITASLRD 242
AGL NLGNTC++N+V+QCL P L L + + + + +L
Sbjct: 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMCALEAHVERALAS 60
Query: 243 LYECMDNMKISPSISPFIMLQVLHNVFPRFADKTDDGSYMQQDANECWTEMVRML-KTAL 301
P +P I L + F Q+DA+E ++ + K L
Sbjct: 61 ---------SGPGSAPRIFSSNLKQISKHF------RIGRQEDAHEFLRYLLDAMQKACL 105
Query: 302 PGENEEGQDSAKS---SFIEQYFYTIMDTELKCS----ESETEPPTKGTESFQQLSCYIT 354
+ S + ++Q F + +++KC S T + F LS I
Sbjct: 106 DRFKKLKAVDPSSQETTLVQQIFGGYLRSQVKCLNCKHVSNT------YDPFLDLSLDIK 159
Query: 355 TD--VKYMLPGL--KNKLQDQITKRSPSLDRDAVYVKTSK---VSRLPAYLTIQFVRFFY 407
++ L +L + + +R VK SK + R P LTI RF
Sbjct: 160 GADSLEDALEQFTKPEQLDGENKYKC---ERCKKKVKASKQLTIHRAPNVLTIHLKRFSN 216
Query: 408 KEKERINAKVLKDIKFPIEFD 428
+IN K I FP D
Sbjct: 217 FRGGKIN----KQISFPETLD 233
Score = 50.0 bits (120), Expect = 1e-06
Identities = 16/25 (64%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Query: 112 PAGLNNLGNTCYMNAVIQCL-KTVP 135
AGL NLGNTC++N+V+QCL T P
Sbjct: 1 GAGLQNLGNTCFLNSVLQCLTHTPP 25
>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational
modification, protein turnover, chaperones].
Length = 415
Score = 67.0 bits (163), Expect = 8e-12
Identities = 86/389 (22%), Positives = 137/389 (35%), Gaps = 74/389 (19%)
Query: 188 YLPAGLNNLGNTCYMNAVIQCLKTVPEL-----RKALKNLKGGLQPGSNPAQSITASLRD 242
P GL N GNTCYMN +QCL ++ +L + P P +
Sbjct: 69 LPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIA 128
Query: 243 LYECMDNMKISPSISPFIMLQVLHNVFPRFADKTDDGSYMQQDANECWTEMVRMLKTALP 302
LYE SISP + +L F+ MQQD+ E + +L
Sbjct: 129 LYETPGCHG-PKSISPRNFIDILSGRNKLFSGD------MQQDSQEFLIFFLDLL----- 176
Query: 303 GENEEGQDSAKSSFIEQYFYTIMDTELKCSESETEPPTKGTESFQQLSCYITTDVKYMLP 362
+ + ++S +E + D + E E L + K
Sbjct: 177 -HEDLNGNKSRSPILE-----LKDEFEEVREELPLSHFSHHEWNLHLRSNKSLVAKTFFG 230
Query: 363 GLKNKLQDQITKRSPSLDRDAVYVKTSKVSRLPAYLTIQFV-----RFFYKEKERINAKV 417
K++LQ + + + + +P Y +Q FY+E E++ K
Sbjct: 231 QDKSRLQCEACNYT------STTIAMFSTLLVPPYEVVQLGLQECIDRFYEE-EKLEGK- 282
Query: 418 LKDIKFPIEFDAYELCTPELQAKLAPMREKFKIAEEKEAFEEFRTQYVFISIPMDEIYVR 477
DA+ C P+ K R++ +I + + I I I V
Sbjct: 283 ----------DAWR-C-PKCGRK-ESSRKRMEILVLPD--------VLIIHISRFHISVM 321
Query: 478 FGQKIYAPVGDRIQDFGVK---STEFQSRGQGSSPGRVDIGSNNSGYYTLQAVLTHKGRT 534
+KI P G + V+ + F + P + Y+L V+ H G T
Sbjct: 322 GRKKIDTPQGWK-NTASVEVNVTLLFNNGIG-YIPRK----------YSLLGVVCHNG-T 368
Query: 535 SSSGHYVAWVKKPNGTWIKCDDDKVYPIS 563
+ GHY + VK+ +GTW DD +V S
Sbjct: 369 LNGGHYFSEVKR-SGTWNVYDDSQVRKGS 396
Score = 46.6 bits (110), Expect = 2e-05
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 100 MNESERAVSLDLPAGLNNLGNTCYMNAVIQCLKTVPEL 137
M S+R P GL N GNTCYMN +QCL ++ +L
Sbjct: 60 MVVSKR-KDNLPPNGLRNKGNTCYMNCALQCLLSIGDL 96
>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 300
Score = 65.8 bits (161), Expect = 1e-11
Identities = 62/266 (23%), Positives = 100/266 (37%), Gaps = 77/266 (28%)
Query: 192 GLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECM-DNM 250
GL N GNTCY N+V+Q L +++ L+DL+E + +
Sbjct: 1 GLENFGNTCYCNSVLQALY----------------------FENLLTCLKDLFESISEQK 38
Query: 251 KISPSISPFIMLQVLHNVFPRFADKTDDGSYMQQDA--------NECWTEMVRMLKTALP 302
K + ISP + L F +YM QDA NE E++ + A
Sbjct: 39 KRTGVISPKKFITRLKRENELF------DNYMHQDAHEFLNFLLNEI-AEILDAERKAEK 91
Query: 303 GENEEGQDSAKS---SFIEQYFYTIMDTELKCSESETEPPTKGTESFQQLS------CYI 353
+ ++ +++ + F I+ E +C ET + E+F LS I
Sbjct: 92 ANRKLNNNNNAEPQPTWVHEIFQGILTNETRCLTCET--VSSRDETFLDLSIDVEQNTSI 149
Query: 354 TTDVKY-----MLPGLKNK--------LQDQITKRSPSLDRDAVYVKTSKVSRLPAYLTI 400
T+ ++ L G +NK LQ+ K K+ +LP L +
Sbjct: 150 TSCLRQFSATETLCG-RNKFYCDECCSLQEA--------------EKRMKIKKLPKILAL 194
Query: 401 QFVRFFYKEKERINAKVLKDIKFPIE 426
RF Y E+ K+ + FP+E
Sbjct: 195 HLKRFKYDEQLNRYIKLFYRVVFPLE 220
Score = 48.1 bits (115), Expect = 5e-06
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 522 YTLQAVLTHKGRTSSSGHYVAWVKKPNGTWIKCDDDKVYPISEEEVLKLSGGGK 575
Y L AV+ H G + GHYV+ + K +G W+ DD+ V I E V + G
Sbjct: 237 YELVAVVVHIGGGPNHGHYVS-IVKSHGGWLLFDDETVEKIDENAVEEFFGDSP 289
Score = 39.2 bits (92), Expect = 0.004
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 27/69 (39%)
Query: 114 GLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDNMK 173
GL N GNTCY N+V+Q L +++ L+DL+E + K
Sbjct: 1 GLENFGNTCYCNSVLQALY----------------------FENLLTCLKDLFESISEQK 38
Query: 174 -----ISPS 177
ISP
Sbjct: 39 KRTGVISPK 47
>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 334
Score = 65.4 bits (160), Expect = 2e-11
Identities = 59/276 (21%), Positives = 101/276 (36%), Gaps = 54/276 (19%)
Query: 192 GLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLY---ECMD 248
GL N G TCYMN+++Q L PE R A+ ++ + +S+ +L+ L+ + +
Sbjct: 4 GLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPP--TEDDDDNKSVPLALQRLFLFLQLSE 61
Query: 249 NMKISPSISPFIMLQVLHNVFPRFADKTDDGSYMQQDANECWTEMVRMLKTALPGENEEG 308
+ + ++ R ++ Q D E + + L+ L G +EG
Sbjct: 62 SPVKTTELTDKT----------RSFGWDSLNTFEQHDVQEFFRVLFDKLEEKLKGTGQEG 111
Query: 309 QDSAKSSFIEQYFYTIMDTELKCSE--SETEPPTKGTESFQQLSCYITTDVKYMLPGLKN 366
I+ F + + C E E+E E F L + K + L
Sbjct: 112 -------LIKNLFGGKLVNYIICKECPHESER----EEYFLDLQVAV-KGKKNLEESLDA 159
Query: 367 KLQDQITKRSPSLDRDAVY-----------VKTSKVSRLPAYLTIQFVRFFYK----EKE 411
+Q + L+ D Y K +LP LT+Q RF + +
Sbjct: 160 YVQGET------LEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRI 213
Query: 412 RINAKVLKDIKFPIEFDAYELCTPELQAKLAPMREK 447
+IN + +FP+E D L K +K
Sbjct: 214 KINDR----FEFPLELDMEPYTEKGLAKKEGDSEKK 245
Score = 52.6 bits (127), Expect = 2e-07
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 522 YTLQAVLTHKGRTSSSGHYVAWVK-KPNGTWIKCDDDKVYPISEEEVLKLSGGG 574
Y L VL H G + GHY +++K + +G W K +DD V P + + GG
Sbjct: 252 YELHGVLVHSG-DAHGGHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAEEECFGG 304
Score = 48.0 bits (115), Expect = 8e-06
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 114 GLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASL 162
GL N G TCYMN+++Q L PE R A+ ++ + +S+ +L
Sbjct: 4 GLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPP--TEDDDDNKSVPLAL 50
>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 279
Score = 62.0 bits (151), Expect = 1e-10
Identities = 76/389 (19%), Positives = 119/389 (30%), Gaps = 130/389 (33%)
Query: 192 GLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDNMK 251
GL+NLGNTC+ NAV+Q L P LR+ L + ++L+
Sbjct: 1 GLSNLGNTCFFNAVMQNLSQTPALRELLS-----------------ETPKELFSQ----- 38
Query: 252 ISPSISPFIMLQVLHNVFPRFADKTDDGSYMQQDANECWTEMVRMLKTALPGENEEGQDS 311
+ P+F Y QQD++ E++R L L
Sbjct: 39 ----------VCRKA---PQFKG------YQQQDSH----ELLRYLLDGL---------- 65
Query: 312 AKSSFIEQYFYTIMDTELKCSESETEPPTKGTESFQQLSCYITTDVKYMLPGLKNKLQDQ 371
+FI+ F + + + C T E F LS + ++K +++ L Q
Sbjct: 66 --RTFIDSIFGGELTSTIMCESCGTVSLVY--EPFLDLSLPRSDEIK-SECSIESCL-KQ 119
Query: 372 ITKRSPSLDRDAV-------YVKTSKVSRLPAYLTIQFVRFFYKEKERINAKVLKDIKFP 424
T+ + K +S+LP L I RF + + KV + + FP
Sbjct: 120 FTEVEILEGNNKFACENCTKAKKQYLISKLPPVLVIHLKRFQ-QPRSANLRKVSRHVSFP 178
Query: 425 IEFDAYELCTPELQAKLAPMREKFKIAEEKEAFEEFRTQYVFISIPMDEIYVRFGQKIYA 484
D C P K +E+K ++Y
Sbjct: 179 EILDLAPFCDP-----------KCNSSEDKS---------------------SVLYRLYG 206
Query: 485 PVGDRIQDFGVKSTEFQSRGQGSSPGRVDIGSNNSGYYTLQAVLTHKGRTSSSGH----Y 540
V G+ SG+Y + + S
Sbjct: 207 VV-------------------------EHSGTMRSGHYVAYVKVRPPQQRLSDLTKSKPA 241
Query: 541 VAWVKKPNGTWIKCDDDKVYPISEEEVLK 569
+G W D V +S EEVLK
Sbjct: 242 ADEAGPGSGQWYYISDSDVREVSLEEVLK 270
Score = 44.3 bits (105), Expect = 8e-05
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 114 GLNNLGNTCYMNAVIQCLKTVPELRKALK 142
GL+NLGNTC+ NAV+Q L P LR+ L
Sbjct: 1 GLSNLGNTCFFNAVMQNLSQTPALRELLS 29
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 230
Score = 57.7 bits (140), Expect = 2e-09
Identities = 24/96 (25%), Positives = 34/96 (35%), Gaps = 14/96 (14%)
Query: 473 EIYVRFGQKIYAPVGDRIQDFGVKSTEFQSRGQGSSPGRVDIGSNNSGYYTLQAVLTHKG 532
+K+ PV + D + P Y L AV+ H G
Sbjct: 137 SFSRGSTRKLTTPVTFPLNDLDLT------------PYVDTRSFTGPFKYDLYAVVNHYG 184
Query: 533 RTSSSGHYVAWVKKPN-GTWIKCDDDKVYPISEEEV 567
+ + GHY A+ K W K DD +V +SE V
Sbjct: 185 -SLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSV 219
Score = 51.5 bits (124), Expect = 3e-07
Identities = 14/18 (77%), Positives = 17/18 (94%)
Query: 114 GLNNLGNTCYMNAVIQCL 131
GL NLGNTCYMN+++QCL
Sbjct: 1 GLRNLGNTCYMNSILQCL 18
Score = 51.5 bits (124), Expect = 3e-07
Identities = 14/18 (77%), Positives = 17/18 (94%)
Query: 192 GLNNLGNTCYMNAVIQCL 209
GL NLGNTCYMN+++QCL
Sbjct: 1 GLRNLGNTCYMNSILQCL 18
Score = 34.6 bits (80), Expect = 0.10
Identities = 29/162 (17%), Positives = 46/162 (28%), Gaps = 40/162 (24%)
Query: 280 SYMQQDANECWTEMVRMLKTALPGENEEGQDSAKSSFIEQYFYTIMDTELKCSESETEPP 339
S QQDA E ++ L S I F + + L C
Sbjct: 19 SADQQDAQEFLLFLLDGLH----------------SIIVDLFQGQLKSRLTCLTCGKT-- 60
Query: 340 TKGTESFQQLSCYITTDVKYMLPGLKNKLQDQITK-------------RSPSLDRDAVYV 386
+ +F+ + K L+D + + P +
Sbjct: 61 ---STTFEPFTYLSLPIPSGSGDAPKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKAT 117
Query: 387 KTSKVSRLPAYLTIQFVRFFYKE--KERINAKVLKDIKFPIE 426
K +SRLP L I RF + ++ V FP+
Sbjct: 118 KKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPV----TFPLN 155
>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 324
Score = 55.5 bits (134), Expect = 2e-08
Identities = 57/266 (21%), Positives = 94/266 (35%), Gaps = 48/266 (18%)
Query: 192 GLNNLGNTCYMNAVIQCLKTVPELRKAL--------KNLKGGLQPGSNPAQSITASLRDL 243
GL NLG TCY+N+ +Q E RKA+ LK + Q+I L+ +
Sbjct: 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLI 60
Query: 244 YECMDNMKISPSISPFIMLQVLHNVFPRFADKTDDGSYMQQDANECWTEMVRMLKTALPG 303
+ + S + P ++ L D G QQDA E ++ + L
Sbjct: 61 FAQLQFGNRS-VVDPSGFVKAL---------GLDTGQ--QQDA----QEFSKLFLSLLEA 104
Query: 304 ENEEGQDSAKSSFIEQYFYTIMDTELKCSESETEPPTKGTESFQQLSCYITTDVKYMLPG 363
+ + ++ + ++ F +CS+ E F +L L G
Sbjct: 105 KLSKSKNPDLKNIVQDLFRGEYSYVTQCSKCGRESSL--PSKFYELE--------LQLKG 154
Query: 364 LKNKLQDQITK--RSPSLDRDAVY-----------VKTSKVSRLPAYLTIQFVRFFYKEK 410
K L++ I + + L D Y + +++ LP L Q +RF + K
Sbjct: 155 HK-TLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFDRK 213
Query: 411 ERINAKVLKDIKFPIEFDAYELCTPE 436
K+ I FP D E
Sbjct: 214 TGAKKKLNASISFPEILDMGEYLAES 239
Score = 53.2 bits (128), Expect = 2e-07
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 522 YTLQAVLTHKGRTSSSGHYVAWVKKP-NGTWIKCDDDKVYPI 562
Y L VL H+G ++ SGHY+A +K G W K +D+ V +
Sbjct: 246 YELSGVLIHQGVSAYSGHYIAHIKDEQTGEWYKFNDEDVEEM 287
Score = 40.1 bits (94), Expect = 0.002
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 114 GLNNLGNTCYMNAVIQCLKTVPELRKAL 141
GL NLG TCY+N+ +Q E RKA+
Sbjct: 1 GLKNLGATCYVNSFLQLWFMNLEFRKAV 28
>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 311
Score = 55.4 bits (134), Expect = 3e-08
Identities = 48/253 (18%), Positives = 84/253 (33%), Gaps = 58/253 (22%)
Query: 192 GLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGG-LQPGSNPAQSITASLRDLYECM--- 247
GL NLGN+CY+N+V+Q L ++P + +L+ +PA + L L + +
Sbjct: 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKLADGLLSG 60
Query: 248 -------DNMKISPS---ISPFIMLQVLHNVFPRFADKTDDGSYMQQDANECWTEMVRML 297
+ P I P + ++ P F + QQDA E ++ L
Sbjct: 61 RYSKPASLKSENDPYQVGIKPSMFKALIGKGHPEF------STMRQQDALEFLLHLIDKL 114
Query: 298 KTALPGENEEGQDSAKSSFIEQYFYTIMDTELKCSESETEPPTKGTESFQQLSCYITTDV 357
+ E ++ + F +++ L+C K + +LS ++ V
Sbjct: 115 ------DRESFKNLGLN--PNDLFKFMIEDRLECLS------CKKVKYTSELSEILSLPV 160
Query: 358 KYMLPGLKNKLQDQITKRSP---------------------SLDRDAVYVKTSKVSRLPA 396
K ++ P + KT+ P
Sbjct: 161 PKDEATEK---EEGELVYEPVPLEDCLKAYFAPETIEDFCSTCKEKTTATKTTGFKTFPD 217
Query: 397 YLTIQFVRFFYKE 409
YL I RF E
Sbjct: 218 YLVINMKRFQLLE 230
Score = 51.9 bits (125), Expect = 4e-07
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 518 NSGYYTLQAVLTHKGRTSSSGHYVAWVKK---PNGTWIKCDDDKVYPISEEEVLK 569
G Y L A ++HKG + SGHYVA +KK G W+ +D+KV + +K
Sbjct: 248 GPGKYELIAFISHKGTSVHSGHYVAHIKKEIDGEGKWVLFNDEKVVASQDPPEMK 302
Score = 51.6 bits (124), Expect = 4e-07
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 114 GLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGG-LQPGSNPAQSITASLRDLYECMDNM 172
GL NLGN+CY+N+V+Q L ++P + +L+ +PA + L L D +
Sbjct: 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKLA---DGL 57
Query: 173 KISPSISP 180
P
Sbjct: 58 LSGRYSKP 65
>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 332
Score = 54.5 bits (131), Expect = 6e-08
Identities = 57/280 (20%), Positives = 90/280 (32%), Gaps = 71/280 (25%)
Query: 191 AGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDNM 250
GLNNLGNTCY+N+V+Q L P + LK+L + QS + Y
Sbjct: 25 VGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLISSVEQ-LQSSFLLNPEKYN----- 78
Query: 251 KISPSISPFIMLQVLHNVFPRFADKTDDGSYMQQDANE---CWTEMVRMLKTALPGENEE 307
+ +P +L L V P + Y+Q DA E C ++
Sbjct: 79 DELANQAPRRLLNALREVNPMYE------GYLQHDAQEVLQCILGNIQ------------ 120
Query: 308 GQDSAKSSFIEQYFYTIMDTELKCSESETEPPTKGTESFQQLSCYITTDVKYMLPGLKNK 367
+E+ F + +C E ET T+ E FQ +S +
Sbjct: 121 -------ELVEKDFQGQLVLRTRCLECETF--TERREDFQDISVPVQESELSKSEESSEI 171
Query: 368 LQDQITKRSPSLDRDAVYVKTSKV-----------------------SRLPAYLTIQFVR 404
D T+ + + ++ +LP +TI
Sbjct: 172 SPDPKTEMKTLKWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKLPEVITIHLKC 231
Query: 405 F--------FYKEKERINAKVLKDIKFPIEFDAYELCTPE 436
F Y ++N +L +K +E E T
Sbjct: 232 FAANGSEFDCYGGLSKVNTPLLTPLKLSLE----EWSTKP 267
Score = 49.9 bits (119), Expect = 2e-06
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 516 SNNSGYYTLQAVLTHKGRTSSSGHYVAWVKKPNGTWIKCDDDKVYPISEEEVLKL 570
+ Y L AV+ H G T SSGHY A+V+ W+ DD +V E++ L+
Sbjct: 266 KPKNDVYRLFAVVMHSGATISSGHYTAYVR-----WLLFDDSEVKVTEEKDFLEA 315
Score = 49.1 bits (117), Expect = 3e-06
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 113 AGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLY 166
GLNNLGNTCY+N+V+Q L P + LK+L + QS + Y
Sbjct: 25 VGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLISSVEQ-LQSSFLLNPEKY 77
>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 327
Score = 53.3 bits (128), Expect = 1e-07
Identities = 60/262 (22%), Positives = 99/262 (37%), Gaps = 37/262 (14%)
Query: 192 GLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDNMK 251
GL NLGNTCYMN+V+Q L + R+ + +L P +QS+ L+ L + + +
Sbjct: 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLN---LPRLGDSQSVMKKLQLLQAHLMHTQ 57
Query: 252 ISPSISPFIMLQVLHNVFPRFADKTDDGSYMQQDANECWTEMVRMLKTALPGENEEGQDS 311
P L+ P F GS QQD +E ++ L T
Sbjct: 58 RRAEAPPDYFLEASRP--PWFT----PGS--QQDCSEYLRYLLDRLHT------------ 97
Query: 312 AKSSFIEQYFYTIMDTELKCSESETEPPTKGTESFQQLS-CYITTDVKYMLPGLKNKLQD 370
IE+ F + T ++C + LS + + Y L K +
Sbjct: 98 ----LIEKMFGGKLSTTIRCLNCNSTSARTERFRDLDLSFPSVQDLLNYFLSPEKLTGDN 153
Query: 371 QITKRSPSLDRDAVYVKTSKVSRLPAYLTIQFVRFFYKEKERINAKVL------KDIKFP 424
Q + +DA K KV+ P YL + +RF Y +K + K++ + + P
Sbjct: 154 QYYCEKCASLQDA--EKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSINEVLSLP 211
Query: 425 IEFDAYELCTPELQAKLAPMRE 446
+ + L+ K +
Sbjct: 212 VR-VESKSSESPLEKKEEESGD 232
Score = 43.2 bits (102), Expect = 2e-04
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 114 GLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNP 154
GL NLGNTCYMN+V+Q L + R+ + +L S
Sbjct: 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRLGDSQS 41
Score = 29.8 bits (67), Expect = 3.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 522 YTLQAVLTHKGRTSSSGHYVAWVKKPNGT 550
Y L AV+ H G +S SGHY + +
Sbjct: 243 YRLYAVVVHSGYSSESGHYFTYARDQTDA 271
>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification,
protein turnover, chaperones].
Length = 749
Score = 53.1 bits (127), Expect = 3e-07
Identities = 57/285 (20%), Positives = 107/285 (37%), Gaps = 43/285 (15%)
Query: 192 GLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPG--SNPAQSITASLRDLYECMDN 249
GL NLGN+CY+++VIQ L ++ L + NP + + L L +
Sbjct: 305 GLINLGNSCYLSSVIQSLVGYAVSKEEFDLL-QHFEICYMKNPLECLFCQLMKL---LSK 360
Query: 250 MKISPS------ISPFIMLQVLHNVFPRFADKTDDGSYMQQDANECWTEMVRMLKTALPG 303
MK +P ISP ++ P F G + QQDA+E ++ ++
Sbjct: 361 MKETPDNEYVNGISPLDFKMLIGQDHPEF------GKFAQQDAHEFLLFLLEKIR----- 409
Query: 304 ENEEGQDSAKSSFIEQYFYTIMDTELKCS----ESETEPPTKGTESFQQLSCYITTDVKY 359
+G+ S I F ++ L CS S + F + + + +
Sbjct: 410 ---KGERSYLIPPITSLFEFEVERRLSCSGCMDVSYSYESMLMICIFLEGN----DEPQD 462
Query: 360 MLPGLKNKLQDQITKRSPSLDRDAVYV-KTSKVSRLPAYLTIQFVRFFYKEKERINAKVL 418
+ ++ + S + + + LP YL +Q R+ + +
Sbjct: 463 IRKSVEAFFLPDTIEWSCENCKGKKKASRKPFIKSLPKYLILQVGRY------SLQNYKV 516
Query: 419 KDIKFPIEFDAYELCT-PELQAKLAPMREKFKIAEEKEAFEEFRT 462
+ + PIE + ++ +K P E + +E EAF + ++
Sbjct: 517 EKLSDPIEMRSDDMIKLGSFMSKFDPQTENL-LPDEDEAFTDNQS 560
Score = 37.4 bits (86), Expect = 0.025
Identities = 36/127 (28%), Positives = 51/127 (40%), Gaps = 20/127 (15%)
Query: 80 GSKEEDS----MKEPVVKPKF--VEDMNESERAVSLDLPAGLNNLGNTCYMNAVIQCLKT 133
G EE S E +F + ES+ GL NLGN+CY+++VIQ L
Sbjct: 265 GKTEEKSLRKLQSEQNANWEFLEKKRAPESKGESVPSPYVGLINLGNSCYLSSVIQSLVG 324
Query: 134 VPELRKALKNLKGGLQPG--SNPAQSITASLRDLYECMDNMKISPS------ISP--FIM 183
++ L + NP + + L L + MK +P ISP F M
Sbjct: 325 YAVSKEEFDLL-QHFEICYMKNPLECLFCQLMKL---LSKMKETPDNEYVNGISPLDFKM 380
Query: 184 LQGRYLP 190
L G+ P
Sbjct: 381 LIGQDHP 387
>gnl|CDD|239138 cd02673, Peptidase_C19Q, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 245
Score = 51.0 bits (122), Expect = 4e-07
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 522 YTLQAVLTHKGRTSSSGHYVAWVKK--PNGTWIKCDDDKVYPISEEEVLK 569
Y+L AV+ H G + GHY+A+ K+ +W+ C DD++ P+S+ +V
Sbjct: 184 YSLVAVICHLGESPYDGHYIAYTKELYNGSSWLYCSDDEIRPVSKNDVST 233
Score = 32.9 bits (75), Expect = 0.31
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 10/75 (13%)
Query: 193 LNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDN-MK 251
L N GN+CY N+ +Q L ++ ++ N + Q L L E +D+ M+
Sbjct: 2 LVNTGNSCYFNSTMQALSSIGKINTEFDN---------DDQQDAHEFLLTLLEAIDDIMQ 52
Query: 252 ISPSISPFIMLQVLH 266
++ + P +++
Sbjct: 53 VNRTNVPPSNIEIKR 67
Score = 32.9 bits (75), Expect = 0.34
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 115 LNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDN-MK 173
L N GN+CY N+ +Q L ++ ++ N + Q L L E +D+ M+
Sbjct: 2 LVNTGNSCYFNSTMQALSSIGKINTEFDN---------DDQQDAHEFLLTLLEAIDDIMQ 52
Query: 174 ISPSISPFI 182
++ + P
Sbjct: 53 VNRTNVPPS 61
>gnl|CDD|214563 smart00213, UBQ, Ubiquitin homologues. Ubiquitin-mediated
proteolysis is involved in the regulated turnover of
proteins required for controlling cell cycle
progression.
Length = 72
Score = 46.9 bits (112), Expect = 5e-07
Identities = 17/70 (24%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 14 VKVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKNDE-WDNFKLS 71
+ VK +T ++V + K ++ ELTG+ ++Q+++ KG L++D ++ +
Sbjct: 3 LTVKTLDGKTITLEVKPSDTVSELKEKIAELTGIPPEQQRLIYKGKVLEDDRTLADYGIQ 62
Query: 72 NGSMVLLMGS 81
+GS + L+
Sbjct: 63 DGSTIHLVLR 72
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational
modification, protein turnover, chaperones].
Length = 823
Score = 49.1 bits (117), Expect = 5e-06
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 522 YTLQAVLTHKGRTSSSGHYVAWVKKP-NGTWIKCDDDKVYPISEEEVLK 569
Y L AV H G S GHY A+ + N W DD ++ + E+ +
Sbjct: 764 YDLYAVDNHYGGLSG-GHYTAYARNFANNGWYLFDDSRITEVDPEDSVT 811
Score = 46.4 bits (110), Expect = 4e-05
Identities = 17/26 (65%), Positives = 19/26 (73%)
Query: 114 GLNNLGNTCYMNAVIQCLKTVPELRK 139
GL NLGNTCYMN+ +QCL ELR
Sbjct: 267 GLRNLGNTCYMNSALQCLMHTWELRD 292
Score = 46.4 bits (110), Expect = 4e-05
Identities = 17/26 (65%), Positives = 19/26 (73%)
Query: 192 GLNNLGNTCYMNAVIQCLKTVPELRK 217
GL NLGNTCYMN+ +QCL ELR
Sbjct: 267 GLRNLGNTCYMNSALQCLMHTWELRD 292
>gnl|CDD|239131 cd02666, Peptidase_C19J, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 343
Score = 47.1 bits (112), Expect = 1e-05
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 112 PAGLNNLGNTCYMNAVIQCLKTVPELRKA 140
PAGL+N+GNTCY+N+++Q T+ LR
Sbjct: 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDL 29
Score = 47.1 bits (112), Expect = 1e-05
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 190 PAGLNNLGNTCYMNAVIQCLKTVPELRKA 218
PAGL+N+GNTCY+N+++Q T+ LR
Sbjct: 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDL 29
Score = 39.8 bits (93), Expect = 0.003
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 522 YTLQAVLTHKGRTSSSGHYVAWVKK-PNGTWIKCDDDKVYPISEEEVL 568
Y L AV H+G SSGHY ++K W K +D+ V + EV
Sbjct: 281 YRLHAVFIHRGEA-SSGHYWVYIKDFEENVWRKYNDETVTVVPASEVF 327
>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 240
Score = 44.7 bits (106), Expect = 5e-05
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 114 GLNNLGNTCYMNAVIQCLKTVPELRKALKNLKG 146
GL NLGNTC+MN+V+Q L ++P L + L+
Sbjct: 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFLE 33
Score = 44.7 bits (106), Expect = 5e-05
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 192 GLNNLGNTCYMNAVIQCLKTVPELRKALKNLKG 224
GL NLGNTC+MN+V+Q L ++P L + L+
Sbjct: 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFLE 33
Score = 40.8 bits (96), Expect = 0.001
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 22/68 (32%)
Query: 522 YTLQAVLTHKGRTSSSGHYVAWVKKPNGTWIKCD---------------------DDKVY 560
Y L+AV+ H G SSGHYV + +KP + K D V
Sbjct: 163 YRLRAVVVHYGSH-SSGHYVCYRRKPLFSKDKEPGSFVRMREGPSSTSHPWWRISDTTVK 221
Query: 561 PISEEEVL 568
+SE EVL
Sbjct: 222 EVSESEVL 229
>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase
[Posttranslational modification, protein turnover,
chaperones].
Length = 1089
Score = 43.3 bits (102), Expect = 4e-04
Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 516 SNNSGY-YTLQAVLTHKGRTSSSGHYVAWVKKP-NGTWIKCDDDKVYPISEEEVLKLSGG 573
S NS Y L VL H G GHY A +K +G W K DD +V +E+EVL+ + G
Sbjct: 424 SENSDAVYVLYGVLVHSGDLHE-GHYYALLKPEKDGRWYKFDDTRVTRATEKEVLEENFG 482
Query: 574 GK 575
G
Sbjct: 483 GD 484
Score = 36.0 bits (83), Expect = 0.065
Identities = 58/250 (23%), Positives = 100/250 (40%), Gaps = 43/250 (17%)
Query: 192 GLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDNMK 251
GL N G TCYMN+++Q L + + RK + + G + S+ +L+ L+ + +
Sbjct: 195 GLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPTDHPRGRD---SVALALQRLFYNLQTGE 251
Query: 252 ISPSISPFIMLQVLHNVFPRFADKTDDGSYMQQDANECWTEMVRMLKTALPGENEEGQDS 311
+ F +DD S+MQ D E R+L+ L E
Sbjct: 252 EPVDTTELTR---------SFGWDSDD-SFMQHDIQ----EFNRVLQDNL--EKSMRGTV 295
Query: 312 AKSSFIEQYFYTIMDTELKCSESETEPPTKGTESFQQLSCYITTDVKYMLPGLKNKLQDQ 371
+++ + F M + +KC ES ++ + D++ + G+KN LQ+
Sbjct: 296 VENA-LNGIFVGKMKSYIKCVN-------VNYESA-RVEDFW--DIQLNVKGMKN-LQES 343
Query: 372 ITK--RSPSLDRDAVYV----------KTSKVSRLPAYLTIQFVRFFYKEKERINAKVLK 419
+ + +LD D Y K LP L +Q RF Y + + K+
Sbjct: 344 FRRYIQVETLDGDNRYNAEKHGLQDAKKGVIFESLPPVLHLQLKRFEYDFERDMMVKIND 403
Query: 420 DIKFPIEFDA 429
+FP+E D
Sbjct: 404 RYEFPLEIDL 413
Score = 32.9 bits (75), Expect = 0.56
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 114 GLNNLGNTCYMNAVIQCLKTVPELRK 139
GL N G TCYMN+++Q L + + RK
Sbjct: 195 GLRNQGATCYMNSLLQSLFFIAKFRK 220
>gnl|CDD|176407 cd01812, BAG1_N, Ubiquitin-like domain of BAG1. BAG1_N
N-terminal ubiquitin-like (Ubl) domain of the BAG1
protein. This domain occurs together with the BAG
domain and is closely related to the Ubl domain of a
family of deubiquitinases that includes Rpn11, UBP6
(USP14), USP7 (HAUSP).
Length = 71
Score = 38.8 bits (91), Expect = 4e-04
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 14 VKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKNDEW-DNFKLSN 72
V+VK G E+ ++ + + K L +TGV+ QK++ KG + E D + +
Sbjct: 3 VRVKHGGESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKD 62
Query: 73 GSMVLLMGS 81
GS V+L+
Sbjct: 63 GSKVMLLED 71
>gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 440
Score = 41.9 bits (99), Expect = 7e-04
Identities = 60/274 (21%), Positives = 96/274 (35%), Gaps = 59/274 (21%)
Query: 187 RYLPA--GLNNLGNTCYMNAVIQCLKTVPELRKAL---KNLKGGLQPGSNPAQSITASLR 241
YLP GLNN+ N Y N +IQ L V +R +N + S + ++ +R
Sbjct: 114 PYLPGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENIKDRKSELVKRLSELIR 173
Query: 242 DLYECMDNMKISPSISPFIMLQ---VLHNVFPRFADKTDDGSYMQQDANECWTEMVRMLK 298
++ N K +SP +LQ + +++D ++ W ++ L
Sbjct: 174 KIWNP-RNFK--GHVSPHELLQAVSKVSKKKFSITEQSDPVEFLS------W--LLNTLH 222
Query: 299 TALPGENEEGQDSAKSSFIEQYFYTIMDTELKCSESETEPPTKGTESFQQLSCYITTDVK 358
L G + F Q I ++K E K + + T+
Sbjct: 223 KDLGGSKKPNSSIIHDCF--QGKVQIETQKIKPHAEEEGSKDKFFKDSRV---KKTSVSP 277
Query: 359 YM-----LPG-----------------LKNKLQDQITKRSPSLDRDAVYVKTSKVSRLPA 396
++ LP LK L+ K L +K +SRLP
Sbjct: 278 FLLLTLDLPPPPLFKDGNEENIIPQVPLKQLLKKYDGKTETELKD---SLKRYLISRLPK 334
Query: 397 YLTIQFVRF----FYKEKERINAKVLKDIKFPIE 426
YL RF F+KEK N + + FPI+
Sbjct: 335 YLIFHIKRFSKNNFFKEK---NPTI---VNFPIK 362
Score = 37.7 bits (88), Expect = 0.017
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 114 GLNNLGNTCYMNAVIQCLKTVPELR 138
GLNN+ N Y N +IQ L V +R
Sbjct: 121 GLNNIKNNDYANVIIQALSHVKPIR 145
>gnl|CDD|239130 cd02665, Peptidase_C19I, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 228
Score = 40.6 bits (95), Expect = 0.001
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 522 YTLQAVLTHKGRTSSSGHYVAWV-KKPNGTWIKCDDDKVYPISEEEVLKLSGGG 574
Y L AVL H+G+ +++GHY A++ K+ W K +D V S EEV + S GG
Sbjct: 164 YELHAVLVHEGQ-ANAGHYWAYIYKQSRQEWEKYNDISVTESSWEEVERDSFGG 216
Score = 34.1 bits (78), Expect = 0.15
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 114 GLNNLGNTCYMNAVIQCL----KTVPE-LRKALKNLKGGLQPGSNPAQSITASLRDLYE 167
GL N+GNTC+ +AVIQ L + V E L L+ Q + S + +
Sbjct: 1 GLKNVGNTCWFSAVIQSLFSQQQDVSEFTHLLLDWLEDAFQAAAEAISPGEKSKNPMVQ 59
Score = 34.1 bits (78), Expect = 0.15
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 192 GLNNLGNTCYMNAVIQCL----KTVPE-LRKALKNLKGGLQPGSNPAQSITASLRDLYE 245
GL N+GNTC+ +AVIQ L + V E L L+ Q + S + +
Sbjct: 1 GLKNVGNTCWFSAVIQSLFSQQQDVSEFTHLLLDWLEDAFQAAAEAISPGEKSKNPMVQ 59
>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL. UBLs function by
remodeling the surface of their target proteins,
changing their target's half-life, enzymatic activity,
protein-protein interactions, subcellular localization
or other properties. At least 10 different
ubiquitin-like modifications exist in mammals, and
attachment of different ubls to a target leads to
different biological consequences. Ubl-conjugation
cascades are initiated by activating enzymes, which
also coordinate the ubls with their downstream
pathways.
Length = 69
Score = 35.7 bits (83), Expect = 0.004
Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 15 KVKW-GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKNDE-WDNFKLSN 72
VK +TFE++V D+ KA++ GV ++Q+++ G LK+D+ ++ + +
Sbjct: 1 TVKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQD 60
Query: 73 GSMVLLMGS 81
GS + L+
Sbjct: 61 GSTLHLVLR 69
>gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase.
Length = 296
Score = 38.9 bits (91), Expect = 0.005
Identities = 53/276 (19%), Positives = 90/276 (32%), Gaps = 38/276 (13%)
Query: 191 AGLNNLGNTCYMNAVIQCLKTVPELR-KALKNLKGGLQPGSNPAQSITASLRDLYECMD- 248
+GL N G CY+NA++Q + +P L L++ + L L++ +D
Sbjct: 1 SGLENNGPNCYLNALLQLMFFIPPLFNAILRHSA-----DCPKENCLLCELGFLFDMLDK 55
Query: 249 ----NMKISPSISPFIMLQVLHNVFPRFADKTDDGSYMQQDANECWT----EMVRMLKTA 300
N + + + F + P A +QQD E ++ L T
Sbjct: 56 STGQNCQATNLLRTF-------SGIPEAAA-----LGLQQDIQEANRFILEQLSLPLLTL 103
Query: 301 LPGENEEGQDSAKSSFIEQYFYTIMDTELKCS----ESETEPPTKGTESFQQLSCYITTD 356
P ++ F T + ++C ES E P E
Sbjct: 104 KPDIFHNRCTGESGDSLDSLFGTSFISSIRCDSCGNESVKEEPLLTLELPYPPI--DKPQ 161
Query: 357 VKYMLPGLKNKL-QDQITKRSPSLDRDAVYVKTSK-VSRLPAYLTIQFVRFFYKEKERIN 414
+ L+ L +++I + + + R + K V LP L I R Y N
Sbjct: 162 GRTFSNILERSLNREKINRITCNSCRKYSLANSRKHVKSLPPILGICLKR--YNVTPNGN 219
Query: 415 AKVL-KDIKFPIEFDAYELCTPELQAKLAPMREKFK 449
L + P+E + P+ FK
Sbjct: 220 WSRLNTFVDIPLEIRLPHFIQDDEMVNEGPLSGNFK 255
Score = 36.2 bits (84), Expect = 0.034
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 113 AGLNNLGNTCYMNAVIQCLKTVPELRKALKN 143
+GL N G CY+NA++Q + +P L A+
Sbjct: 1 SGLENNGPNCYLNALLQLMFFIPPLFNAILR 31
Score = 30.1 bits (68), Expect = 3.5
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 522 YTLQAVLTHKGRTSSSGHYVAWVKK---PNGTWIKCDDDKV 559
Y LQ V+ H G ++ SGH V++++ + W +D V
Sbjct: 256 YELQGVVCHIGDSTHSGHLVSFIRVAPSEDDQWYLFNDFLV 296
>gnl|CDD|176408 cd01813, UBP_N, UBP ubiquitin processing protease. The UBP
(ubiquitin processing protease) domain (also referred
to as USP which stands for "ubiquitin-specific
protease") is present at in a large family of cysteine
proteases that specifically cleave ubiquitin
conjugates. This family includes Rpn11, UBP6 (USP14),
USP7 (HAUSP). This domain is closely related to the
amino-terminal ubiquitin-like domain of BAG1
(Bcl2-associated anthanogene1) protein and is found
only in eukaryotes.
Length = 74
Score = 35.6 bits (82), Expect = 0.006
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 14 VKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVM---CKGATLKNDE-WDNFK 69
V VKWG + + V +++ + K + LTGV +RQK++ KG ++D K
Sbjct: 3 VIVKWGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALK 62
Query: 70 LSNGSMVLLMGS 81
L + +++MG+
Sbjct: 63 LKPNTKIMMMGT 74
>gnl|CDD|215813 pfam00240, ubiquitin, Ubiquitin family. This family contains a
number of ubiquitin-like proteins: SUMO (smt3
homologue), Nedd8, Elongin B, Rub1, and Parkin. A
number of them are thought to carry a distinctive
five-residue motif termed the proteasome-interacting
motif (PIM), which may have a biologically significant
role in protein delivery to proteasomes and recruitment
of proteasomes to transcription sites.
Length = 69
Score = 32.6 bits (75), Expect = 0.065
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 15 KVKWGKE-TFEVDV-DTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND 63
K GK T EVD DT E K ++ + G+ +D+Q+++ G L++D
Sbjct: 1 KTLDGKTITLEVDPSDTVSE---LKEKIEDKEGIPVDQQRLIFSGKVLEDD 48
>gnl|CDD|239135 cd02670, Peptidase_C19N, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 241
Score = 33.3 bits (76), Expect = 0.26
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 12/45 (26%)
Query: 524 LQAVLTHKGRTSSSGHYVAWVKK------------PNGTWIKCDD 556
L + + H+G + +GHYVA+V+ N W+ DD
Sbjct: 169 LCSAVCHRGTSLETGHYVAFVRYGSYSLTETDNEAYNAQWVFFDD 213
>gnl|CDD|239195 cd02794, MopB_CT_DmsA-EC, The MopB_CT_DmsA-EC CD includes the DmsA
enzyme of the dmsABC operon encoding the anaerobic
dimethylsulfoxide reductase (DMSOR) of Escherichia coli
and other related DMSOR-like enzymes. Unlike other
DMSOR-like enzymes, this group has a predicted
N-terminal iron-sulfur [4Fe-4S] cluster binding site.
This CD is of the conserved molybdopterin_binding
C-terminal (MopB_CT) region present in many, but not
all, MopB homologs.
Length = 121
Score = 30.0 bits (68), Expect = 1.4
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 522 YTLQAVLTH-KGRTSSSGHYVAWVKK--PNGTWIKCDDDKVYPISE-EEVLKLSGGGKVI 577
Y LQ + H K RT S+ V W+++ P WI D I + + VL + GKVI
Sbjct: 1 YPLQLIGWHYKRRTHSTFDNVPWLREAFPQEVWINPLDAAARGIKDGDRVLVFNDRGKVI 60
>gnl|CDD|176404 cd01809, Scythe_N, Ubiquitin-like domain of Scythe protein.
Scythe protein (also known as Bat3) is an apoptotic
regulator that is highly conserved in eukaryotes and
contains a ubiquitin-like domain near its N-terminus.
Scythe binds reaper, a potent apoptotic inducer, and
Scythe/Reaper are thought to signal apoptosis, in part
through regulating the folding and activity of
apoptotic signaling molecules.
Length = 72
Score = 28.7 bits (65), Expect = 1.5
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
Query: 14 VKVK---WGKETFEVDVDTDEEPML-FKAQLYELTGVQIDRQKVMCKGATLKNDE-WDNF 68
+KVK TF V+ +E +L K ++ E G+ +++Q+++ G LK+DE +
Sbjct: 3 IKVKTLDSQTHTFTVE---EEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEY 59
Query: 69 KLSNG 73
K+ +G
Sbjct: 60 KVEDG 64
>gnl|CDD|143623 cd07751, PolyPPase_VTC4_like, Polyphosphate(polyP) polymerase
domain of yeast vacuolar transport chaperone (VTC)
protein VTC4, and similar proteins. Saccharomyces
cerevisiae VTC-1, -2, -3, and -4 comprise the
membrane-integral VTC complex. VTC-2,-3, and -4 contain
polyP polymerase domains. S. cerevisiae VTC4 belongs to
this subgroup. For VTC4 it has been shown that this
domain generates polyP from ATP by a phosphotransfer
reaction releasing ADP. This activity is metal
ion-dependent. The ATP gamma phosphate may be cleaved
and then transferred to an acceptor phosphate to form
polyP. PolyP is ubiquitous. In prokaryotes, it is a
store of phosphate and energy. In eukaryotes, polyPs
have roles in bone calcification, and osmoregulation,
and in phosphate transport in the symbiosis of
mycorrhizal fungi and plants. This subgroup belongs to
the CYTH/triphosphate tunnel metalloenzyme (TTM)-like
superfamily, whose enzymes have a unique active site
located within an eight-stranded beta barrel.
Length = 290
Score = 30.8 bits (70), Expect = 1.6
Identities = 20/139 (14%), Positives = 45/139 (32%), Gaps = 10/139 (7%)
Query: 201 YMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDNMKISPSISPFI 260
Y+N+ ++ TV ++ + L+ + + L L + + + + P +
Sbjct: 123 YVNSFLKGKYTVDKVFRKLRKEGKKSE-------AEIEKLEALATEIQYVILKRKLKPVV 175
Query: 261 MLQVLHNVFPRFADKTDDGSYMQQDANECWTEMVRMLKTALPGENEEGQDSAKSSFIEQY 320
F D S D C + N+ + I ++
Sbjct: 176 RTFYRRTAFQLPDDNRVRISL---DTELCMIDERGRDGRRRTTLNDWPFKQLPDNEIVRF 232
Query: 321 FYTIMDTELKCSESETEPP 339
Y +++ +L+ E E P
Sbjct: 233 PYAVLEVKLQTQEGEEPPE 251
>gnl|CDD|145542 pfam02456, Adeno_IVa2, Adenovirus IVa2 protein. IVa2 protein can
interact with the adenoviral packaging signal and that
this interaction involves DNA sequences that have
previously been demonstrated to be required for
packaging. During the course of lytic infection, the
adenovirus major late promoter (MLP) is induced to high
levels after replication of viral DNA has started. IVa2
is a transcriptional activator of the major late
promoter.
Length = 370
Score = 31.2 bits (71), Expect = 1.7
Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 18/45 (40%)
Query: 245 ECMDNMKISPSISPFI------------------MLQVLHNVFPR 271
ECM+ + SIS + VLHN+ PR
Sbjct: 204 ECMEKLGSHKSISKLFHALPSKLHDRFPKCTGFSVFVVLHNMNPR 248
>gnl|CDD|176391 cd01796, DDI1_N, DNA damage inducible protein 1 ubiquitin-like
domain. DDI1_N DDI1 (DNA damage inducible protein 1)
has an amino-terminal ubiquitin-like domain, an
retroviral protease-like (RVP-like) domain, and a UBA
(ubiquitin-associated) domain. This CD represents the
amino-terminal ubiquitin-like domain of DDI1.
Length = 71
Score = 28.5 bits (64), Expect = 1.8
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 19 GKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND 63
+ TF +DVD D E FKA +G+ +Q+++ G L ++
Sbjct: 8 SETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDN 52
>gnl|CDD|173943 cd08184, Fe-ADH3, Iron-containing alcohol dehydrogenases-like.
Iron-containing alcohol dehydrogenase-like. Proteins of
this family have not been characterized. Their specific
function is unknown. The protein structure represents a
dehydroquinate synthase-like fold and is belonged to the
iron-containing alcohol dehydrogenase-like superfamily.
They are distinct from other alcohol dehydrogenases
which contain different protein domains. Alcohol
dehydrogenase catalyzes the reduction of acetaldehyde to
alcohol with NADP as cofactor. Its activity requires
iron or zinc ions. Members of this family are mainly
found in bacteria.
Length = 347
Score = 29.7 bits (67), Expect = 3.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 317 IEQYFYTIMDTELKCSES 334
+QYFYT MD + C ES
Sbjct: 176 RDQYFYTGMDCYIHCIES 193
>gnl|CDD|143234 cd05757, Ig2_IL1R_like, Second immunoglobulin (Ig)-like domain of
interleukin-1 receptor (IL1R) and similar proteins.
Ig2_IL1R_like: domain similar to the second
immunoglobulin (Ig)-like domain of interleukin-1
receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines
which participate in the regulation of inflammation,
immune responses, and hematopoiesis. These cytokines
bind to the IL-1 receptor type 1 (IL1R1), which is
activated on additional association with an accessory
protein, IL1RAP. IL-1 also binds a second receptor
designated type II (IL1R2). Mature IL1R1 consists of
three IG-like domains, a transmembrane domain, and a
large cytoplasmic domain. Mature IL1R2 is organized
similarly except that it has a short cytoplasmic domain.
The latter does not initiate signal transduction. A
naturally occurring cytokine IL-1RA (IL-1 receptor
antagonist) is widely expressed and binds to IL-1
receptors, inhibiting the binding of IL-1 alpha and IL-1
beta. This group also contains ILIR-like 1 (IL1R1L)
which maps to the same chromosomal location as IL1R1 and
IL1R2.
Length = 92
Score = 28.1 bits (63), Expect = 4.1
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 513 DIGSNNSGYYTLQAVLTHKGRT 534
++ ++G YT + TH G+
Sbjct: 58 NVTEEDAGNYTCKLTFTHNGKQ 79
>gnl|CDD|218883 pfam06075, DUF936, Plant protein of unknown function (DUF936).
This family consists of several hypothetical proteins
from Arabidopsis thaliana and Oryza sativa. The function
of this family is unknown.
Length = 564
Score = 29.8 bits (67), Expect = 4.5
Identities = 27/120 (22%), Positives = 43/120 (35%), Gaps = 30/120 (25%)
Query: 81 SKEEDSMKEPVVKPKFVEDMNESERAVSLD-LPAGLNNLG-------------------N 120
SK E + + ++ VS D LP+ L+ LG
Sbjct: 285 SKSEVAPPKKSEAKVPSSSKKWTDGNVSWDSLPSSLSKLGKEALRQRDVAQKAALEALRE 344
Query: 121 TCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDN-MKISPSIS 179
++I+CL T EL + K NP I L ++ +D +KI+ S+S
Sbjct: 345 ASATESLIRCLSTFSELSSSAKE--------DNPLPCIEKFL-KFHQELDQAIKIAESLS 395
>gnl|CDD|226392 COG3875, COG3875, Uncharacterized conserved protein [Function
unknown].
Length = 423
Score = 29.4 bits (66), Expect = 5.0
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 41 YELTGVQIDRQKVMCKGATLKNDEWDN--FKLSNGSMVLLMGSKE-EDSMKEPVVKPKFV 97
YELTG+ +D A N K + ++ K E ++ P+ K
Sbjct: 1 YELTGMNMDTNIKKIPLAFGSGVFELNIVEKNISDLILPSEKEKLIEKKLENPINSKKLS 60
Query: 98 EDMNESERAV 107
E +N +R V
Sbjct: 61 ELVNPEKRIV 70
>gnl|CDD|151333 pfam10884, DUF2683, Protein of unknown function (DUF2683). This
family of proteins with unknown function appears to be
restricted to Methanosarcinaceae.
Length = 80
Score = 27.4 bits (61), Expect = 5.2
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 78 LMGSKEEDSMKEPVVKPKFVEDMNESER 105
+ + E+ + EP +KP+F+E M +
Sbjct: 34 KIIEQYEEEILEPELKPEFIEKMQNIMK 61
>gnl|CDD|197366 cd09916, CpxP_like, CpxP component of the bacterial
Cpx-two-component system and related proteins. This
family summarizes bacterial proteins related to CpxP, a
periplasmic protein that forms part of a two-component
system which acts as a global modulator of cell-envelope
stress in gram-negative bacteria. CpxP aids in combating
extracytoplasmic protein-mediated toxicity, and may also
be involved in the response to alkaline pH. Functioning
as a dimer, it inhibits activation of the kinase CpxA,
but also plays a vital role in the quality control
system of P pili. It has been suggested that CpxP
directly interacts with CpxA via its concave polar
surface. Another member of this family, Spy, is also a
periplasmic protein that may be involved in the response
to stress. The homology between CpxP and Spy suggests
similar functions. A characteristic 5-residue sequence
motif LTXXQ is found repeated twice in many members of
this family.
Length = 96
Score = 27.6 bits (62), Expect = 5.8
Identities = 15/85 (17%), Positives = 33/85 (38%), Gaps = 22/85 (25%)
Query: 365 KNKLQDQITKRSPSLDRDAVYVKTSKVSRLPAYLTIQFVRFFYKEKERINAKVLKDIKFP 424
+ +L+ +T + + D AV ++++ L ++E +
Sbjct: 34 REELRALLT--ADTFDEAAVRALAAEMAEL--------------QQELAVER------AK 71
Query: 425 IEFDAYELCTPELQAKLAPMREKFK 449
Y++ TPE +AKL + K +
Sbjct: 72 ARNQIYQVLTPEQRAKLNELFAKRR 96
>gnl|CDD|237386 PRK13429, PRK13429, F0F1 ATP synthase subunit delta; Provisional.
Length = 181
Score = 28.2 bits (64), Expect = 9.3
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 15/73 (20%)
Query: 124 MNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDNMKISPSISPFIM 183
+ + + L+ PELR AL SNP S L + + +K+SP + F+
Sbjct: 31 LKQLAELLEDSPELRDAL----------SNPVLSAEEKKAVLEKLLGKLKVSPEVLNFLK 80
Query: 184 L---QGR--YLPA 191
L + R LP
Sbjct: 81 LLADRRRLGILPE 93
>gnl|CDD|131814 TIGR02767, TraG-Ti, Ti-type conjugative transfer system protein
TraG. This protein is found in the Agrobacterium
tumefaciens Ti plasmid tra region responsible for
conjugative transfer of the entire plasmid among
Agrobacterium strains. The protein is distantly related
to the F-type conjugation system TraG protein. Both of
these systems are examples of type IV secretion systems.
Length = 623
Score = 28.7 bits (64), Expect = 9.4
Identities = 20/78 (25%), Positives = 26/78 (33%), Gaps = 10/78 (12%)
Query: 213 PELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDNMKISPSISPFIMLQVLHNVFPRF 272
E +NL+ S P + A LR + E S S FI V VF
Sbjct: 335 GEYETEDRNLRRLRAILSEPEPKVRARLRKIQE--------GSESDFIRENV--GVFVNM 384
Query: 273 ADKTDDGSYMQQDANECW 290
+T G Y + W
Sbjct: 385 TPQTFSGVYATASKDTQW 402
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.134 0.391
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 28,628,389
Number of extensions: 2726621
Number of successful extensions: 2446
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2410
Number of HSP's successfully gapped: 100
Length of query: 577
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 475
Effective length of database: 6,413,494
Effective search space: 3046409650
Effective search space used: 3046409650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (27.6 bits)