RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7711
(577 letters)
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase
14 {Human (Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 235 bits (599), Expect = 1e-72
Identities = 198/400 (49%), Positives = 255/400 (63%), Gaps = 46/400 (11%)
Query: 189 LPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSN--PAQSITASLRDLYEC 246
LP GL NLGNTCYMNA +QC+++VPEL+ ALK G L+ AQ ITA+LRDL++
Sbjct: 3 LPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDS 62
Query: 247 MDNMKISPSISPFIMLQVLHNVFPRFADKTDDGSYMQQDANECWTEMVRMLKTALPGENE 306
MD S SI P I+LQ LH FP+FA+K + G Y+QQDANECW +M+R+L+ L +
Sbjct: 63 MDKT--SSSIPPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIED 120
Query: 307 EGQDSA------------KSSFIEQYFYTIMDTELKCSESETEPPTKGTESFQQLSCYIT 354
+ K S I+Q+F +T +KC+ESE E TKG E+ QLSC+I
Sbjct: 121 DSVKETDSSSASAATPSKKKSLIDQFFGVEFETTMKCTESEEEEVTKGKENQLQLSCFIN 180
Query: 355 TDVKYMLPGLKNKLQDQITKRSPSLDRDAVYVKTSKVSRLPAYLTIQFVRFFYKEKERIN 414
+VKY+ GLK +LQ++ITK+SP+L R+A+Y+K+SK+SRLPAYLTIQ VRFFYKEKE +N
Sbjct: 181 QEVKYLFTGLKLRLQEEITKQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVN 240
Query: 415 AKVLKDIKFPIEFDAYELCTPELQAKLAPMREKFKIAEEKEAFEEFRTQYVFISIPMDEI 474
AKVLKD+KFP+ D YELCTPELQ K+ R KFK E+K+ ++ T S +
Sbjct: 241 AKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVK 300
Query: 475 YVRFGQKIYAPVGDRIQDFGVKSTEFQSRGQGSSPGRVDIGSNNSGYYTLQAVLTHKGRT 534
Y F DIGSNN GYY LQAVLTH+GR+
Sbjct: 301 YEPFSFAD------------------------------DIGSNNCGYYDLQAVLTHQGRS 330
Query: 535 SSSGHYVAWVKKPNGTWIKCDDDKVYPISEEEVLKLSGGG 574
SSSGHYV+WVK+ WIK DDDKV ++ E++L+LSGGG
Sbjct: 331 SSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGG 370
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 397
Score = 228 bits (582), Expect = 5e-70
Identities = 111/395 (28%), Positives = 187/395 (47%), Gaps = 26/395 (6%)
Query: 189 LPAGLNNLGNTCYMNAVIQCLKTVPELRKAL------KNLKGGLQPGSNPAQSITASLRD 242
LP G N+GNTCY+NA +Q L V +LR + + + + I ++
Sbjct: 5 LPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKR 64
Query: 243 LYECMDNMKISPSISPFIMLQVLHNVFPRFADKTDDGS-YMQQDANECWTEMVRMLKTAL 301
+E + N K S+ P ++L L +P+FA++ G Y QQDA E +T++ +
Sbjct: 65 CFENLQN-KSFKSVLPVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSM---- 119
Query: 302 PGENEEGQDSAKSSFIEQYFYTIMDTELKCSESETEPPTKGTESFQQLSCYITTDVKYML 361
+ F T +K + ++ + K ES +L C+I+ +M
Sbjct: 120 --------SIVFGDKFSEDFRIQFKTTIKDTANDNDITVKENESDSKLQCHISGTTNFMR 171
Query: 362 PGLKNKLQDQITKRSPSLDRDAVYVKTSKVSRLPAYLTIQFVRFFYKEKERINAKVLKDI 421
GL L ++I KRS +++Y K+SRLP +LT+Q+VRFF+K +K+L+ +
Sbjct: 172 NGLLEGLNEKIEKRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKV 231
Query: 422 KFPIEFDAYELCTPELQAKLAPMREKFKIAEEKEAFEEFRTQYVFISIPMDEIYVRFGQK 481
FP + D ++ TPE A+ +R++ + EKE E+ R P V ++
Sbjct: 232 VFPFQLDVADMLTPEYAAEKVKVRDELR-KVEKEKNEKEREIKRRKFDPSSSENVMTPRE 290
Query: 482 IYAPVGDRIQDFGVKSTEFQSRGQGSSPGRVDIGSNNSGYYTLQAVLTHKGRTSSSGHYV 541
Y + + ++ + P ++ G N S Y L V+TH+G S SGHY
Sbjct: 291 QYETQVALNES---EKDQWLEEYKKHFPPNLEKGENPSCVYNLIGVITHQGANSESGHYQ 347
Query: 542 AWVKKP--NGTWIKCDDDKVYPISEEEVLKLSGGG 574
A+++ W K +DDKV + +E++ L+GGG
Sbjct: 348 AFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGG 382
Score = 74.8 bits (182), Expect = 5e-15
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 110 DLPAGLNNLGNTCYMNAVIQCLKTVPELRKAL------KNLKGGLQPGSNPAQSITASLR 163
LP G N+GNTCY+NA +Q L V +LR + + + + I ++
Sbjct: 4 QLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMK 63
Query: 164 DLYECMDNMKISPSISPFIMLQ 185
+E + N K S+ P ++L
Sbjct: 64 RCFENLQN-KSFKSVLPVVLLN 84
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase
2, USP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 336
Score = 117 bits (294), Expect = 8e-30
Identities = 74/382 (19%), Positives = 110/382 (28%), Gaps = 63/382 (16%)
Query: 191 AGLNNLGNTCYMNAVIQCLKTVPELRKAL--KNLKGGLQPGSNPAQSITASLRDLYECMD 248
AGL NLGNTC+MN+++QCL ELR + L GSN ++ L + +
Sbjct: 4 AGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIW 63
Query: 249 NMKISPSISPFIMLQVLHNVFPRFADKTDDGSYMQQDANECWTEMVRMLKTALPGENEEG 308
+ +SP + PRF Y QQDA E ++ L + E
Sbjct: 64 TSSPNDVVSPSEFKTQIQRYAPRF------VGYNQQDAQEFLRFLLDGL-------HNEV 110
Query: 309 QDSAKSSFIEQYFYTIMDTELKCSESETEPPTKGTESFQQLSCYITTDVKYMLPGLKNKL 368
+ + K + + + L
Sbjct: 111 NRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCT------- 163
Query: 369 QDQITKRSPSLDRDAVYVKTSKVSRLPAYLTIQFVRFFYKEKERINAKVLKDIKFPIEFD 428
S D P + +R F KE ++ D
Sbjct: 164 --DCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDV-------------LDGD 208
Query: 429 AYELCTPELQAKLAPMREKFKIAEEKEAFEEFRTQYVFISIPMDEIYVRFGQKIYAPVGD 488
C K + + + R I +V F
Sbjct: 209 EKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNF---------- 258
Query: 489 RIQDFGVKSTEFQSRGQGSSPGRVDIGSNNSGYYTLQAVLTHKGRTSSSGHYVAWVKKP- 547
+ EF S + N Y L AV H G T+ GHY A+ + P
Sbjct: 259 --PLRDLDLREFASE------------NTNHAVYNLYAVSNHSG-TTMGGHYTAYCRSPG 303
Query: 548 NGTWIKCDDDKVYPISEEEVLK 569
G W +D V P+S +V
Sbjct: 304 TGEWHTFNDSSVTPMSSSQVRT 325
Score = 67.5 bits (163), Expect = 9e-13
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 113 AGLNNLGNTCYMNAVIQCLKTVPELRKAL--KNLKGGLQPGSNPAQSITASLRDLYECMD 170
AGL NLGNTC+MN+++QCL ELR + L GSN ++ L + +
Sbjct: 4 AGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIW 63
Query: 171 NMKISPSISPFIMLQ 185
+ +SP
Sbjct: 64 TSSPNDVVSPSEFKT 78
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7,
HAUSP) {Human (Homo sapiens) [TaxId: 9606]}
Length = 347
Score = 80.9 bits (198), Expect = 4e-17
Identities = 52/243 (21%), Positives = 93/243 (38%), Gaps = 21/243 (8%)
Query: 192 GLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDNMK 251
GL N G TCYMN+++Q L +LRKA+ + G + ++S+ +L+ ++ + +
Sbjct: 8 GLKNQGATCYMNSLLQTLFFTNQLRKAVYMMP---TEGDDSSKSVPLALQRVFYELQH-- 62
Query: 252 ISPSISPFIMLQVLHNVFPRFADKTDDGSYMQQDANECWTEMVRMLKTALPGENEEGQDS 311
S P ++ + D S+MQ D E ++ ++ + G EG
Sbjct: 63 ---SDKPVGTKKLTKSFGWETLD-----SFMQHDVQELCRVLLDNVENKMKGTCVEGTIP 114
Query: 312 AKSSFIEQYFYTIMDTELKCSESETEPPTKGTESFQQLSCYITTDVKYML-PGLKNKLQD 370
+ F M + ++C E + + QLS ++ + + D
Sbjct: 115 -------KLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLD 167
Query: 371 QITKRSPSLDRDAVYVKTSKVSRLPAYLTIQFVRFFYKEKERINAKVLKDIKFPIEFDAY 430
K K K LP L +Q +RF Y + N K+ +FP +
Sbjct: 168 GDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLD 227
Query: 431 ELC 433
E
Sbjct: 228 EFL 230
Score = 66.7 bits (161), Expect = 2e-12
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 114 GLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPAQSITASLRDLYECMDNMK 173
GL N G TCYMN+++Q L +LRKA+ + G + ++S+ +L+ ++ + +
Sbjct: 8 GLKNQGATCYMNSLLQTLFFTNQLRKAVYMMP---TEGDDSSKSVPLALQRVFYELQHSD 64
Query: 174 ISPSISPFIMLQGR 187
G
Sbjct: 65 KPVGTKKLTKSFGW 78
Score = 55.9 bits (133), Expect = 5e-09
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 517 NNSGYYTLQAVLTHKGRTSSSGHYVAWV-KKPNGTWIKCDDDKVYPISEEEVLKLSGGG 574
+ Y L AVL H G + GHYV ++ K +G W K DDD V ++EE ++ + GG
Sbjct: 236 KDPANYILHAVLVHSGD-NHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGG 293
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase
8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 348
Score = 77.8 bits (190), Expect = 4e-16
Identities = 51/277 (18%), Positives = 88/277 (31%), Gaps = 41/277 (14%)
Query: 192 GLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPA----QSITASLRDLYECM 247
GL NLGNTCYMN+++QCL P L + + + + +
Sbjct: 17 GLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKAL 76
Query: 248 DNMKISPSISPFIMLQVLHNVFPRFADKTDDGSYMQQDANECWTEMVRMLKTALPGENEE 307
+ ISP + + +FA Y QQD+ E ++ L L +
Sbjct: 77 WTGQYRY-ISPKDFKITIGKINDQFA------GYSQQDSQELLLFLMDGLHEDLNKADNR 129
Query: 308 GQDSAKS----------------------SFIEQYFYTIMDTELKCSESETEPPTKGTES 345
+ ++ S I F + ++C + T E+
Sbjct: 130 KRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTF--EA 187
Query: 346 FQQLSCYITTDVKYMLPGLKN------KLQDQITKRSPSLDRDAVYVKTSKVSRLPAYLT 399
F LS + + K L KL D +K ++ +LP L
Sbjct: 188 FMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLL 247
Query: 400 IQFVRFFYKEKERINAKVLKDIKFPIEFDAYELCTPE 436
+ RF Y + + + D + + P+
Sbjct: 248 VHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPK 284
Score = 65.9 bits (159), Expect = 3e-12
Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 512 VDIGSNNSGYYTLQAVLTHKGRTSSSGHYVAWVK-KPNGTWIKCDDDKVYPISEEEVLK 569
V NN Y L +V H G GHY A+ K W K DD +V IS V
Sbjct: 280 VIGPKNNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKS 337
Score = 60.9 bits (146), Expect = 1e-10
Identities = 24/143 (16%), Positives = 48/143 (33%), Gaps = 7/143 (4%)
Query: 114 GLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGLQPGSNPA----QSITASLRDLYECM 169
GL NLGNTCYMN+++QCL P L + + + + +
Sbjct: 17 GLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKAL 76
Query: 170 DNMK---ISPSISPFIMLQGRYLPAGLNNLGNTCYMNAVIQCLKTVPELRKALKNLKGGL 226
+ ISP + + AG + + + ++ L K K
Sbjct: 77 WTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEEN 136
Query: 227 QPGSNPAQSITASLRDLYECMDN 249
+ ++ + + + ++
Sbjct: 137 NDHLDDFKAAEHAWQKHKQLNES 159
>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 95
Score = 64.2 bits (156), Expect = 2e-13
Identities = 19/71 (26%), Positives = 37/71 (52%)
Query: 14 VKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKNDEWDNFKLSNG 73
+K+ W K +V V D K +++ +TG+ QKVM KG ++ K+++G
Sbjct: 20 LKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPEDKTLREIKVTSG 79
Query: 74 SMVLLMGSKEE 84
+ ++++GS
Sbjct: 80 AKIMVVGSTIS 90
>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 96
Score = 61.2 bits (148), Expect = 2e-12
Identities = 47/82 (57%), Positives = 58/82 (70%), Gaps = 2/82 (2%)
Query: 14 VKVKWGKE-TFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKNDEWDNFKLSN 72
V VKWGKE V+++TDE PM+FKAQL+ LTGVQ RQKVM KG TLK+D+W N K+ N
Sbjct: 10 VTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDDDWGNIKMKN 69
Query: 73 GSMVLLMGSKEEDSMKEPVVKP 94
G VL+MGS + +EP K
Sbjct: 70 GMTVLMMGSADALP-EEPSAKT 90
>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone
regulator-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 81
Score = 56.0 bits (135), Expect = 9e-11
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 14 VKVKWGKETFEVDV---DTDEEPML--FKAQLYELTGVQIDRQKVMCKGATLKNDE--WD 66
V V E ++ V EP++ + E+ GV QK++ KG +LK E
Sbjct: 4 VTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLS 63
Query: 67 NFKLSNGSMVLLMGSKE 83
+ +G V+L+G K
Sbjct: 64 ALGIQDGCRVMLIGKKN 80
>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 73
Score = 52.8 bits (127), Expect = 1e-09
Identities = 17/70 (24%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 14 VKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKNDE-WDNFKLSN 72
+ +K G++ +EV+V + + FK + + G+ + Q+++ G LK+D+ +++ + +
Sbjct: 4 IHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQD 63
Query: 73 GSMVLLMGSK 82
G V L+ S+
Sbjct: 64 GHSVHLVKSQ 73
>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 90
Score = 50.4 bits (120), Expect = 1e-08
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 14 VKVKWGKETFE-VDVDTDEEPMLFKAQLYELTGVQIDRQKVMC---KGATLKNDE-WDNF 68
+ VKWG + + + D+ + K L LTGV +RQK++ KG +ND
Sbjct: 10 IIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGAL 69
Query: 69 KLSNGSMVLLMGSKEE 84
KL + +++MG++E
Sbjct: 70 KLKPNTKIMMMGTRES 85
>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 84
Score = 46.1 bits (109), Expect = 3e-07
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Query: 9 PHTYIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLK-NDEWDN 67
PH V VK K+ + V K ++ + D+ ++ G LK D
Sbjct: 5 PHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQ 64
Query: 68 FKLSNGSMVLLMGSKEEDSM 87
+ +G V L+ ++ +M
Sbjct: 65 CGVRDGLTVHLVIKRQHRAM 84
>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 83
Score = 44.2 bits (104), Expect = 1e-06
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 14 VKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLK-NDEWDNFKLSN 72
V VK ++ E + + FK Q+ + DR ++ G L+ D + +
Sbjct: 13 VSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILD 72
Query: 73 GSMVLLM 79
GS V ++
Sbjct: 73 GSTVHVV 79
>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 41.9 bits (98), Expect = 1e-05
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Query: 8 PPHTYIVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKNDE-WD 66
P V VK KE E V + FK + + Q D+ ++ G LK+ +
Sbjct: 29 EPKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLI 88
Query: 67 NFKLSNGSMVLLM 79
+ +G V L+
Sbjct: 89 QHGIHDGLTVHLV 101
>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog
A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 36.0 bits (83), Expect = 9e-04
Identities = 14/73 (19%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 13 IVKVKWGKETFEVDVDTDEEPMLFKAQLYELTG---VQIDRQKVMCKGATLKNDE-WDNF 68
+K + TF++ ++ DE + K ++ G + QK++ G L +D ++
Sbjct: 6 TLKTLQQQ-TFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 69 KLSNGSMVLLMGS 81
++ + V++M +
Sbjct: 65 RIDEKNFVVVMVT 77
>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 34.1 bits (78), Expect = 0.008
Identities = 7/50 (14%), Positives = 15/50 (30%)
Query: 14 VKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND 63
+ ++ K T D K + + D Q++ L +
Sbjct: 4 LMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDG 53
>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 73
Score = 32.5 bits (74), Expect = 0.014
Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 13 IVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKNDE-WDNFKLS 71
VK GK E+D++ + K ++ E G+ +Q+++ G L +D+ ++ +
Sbjct: 4 KVKTLTGK-EIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIE 62
Query: 72 NGSMVLLM 79
GS++ L+
Sbjct: 63 GGSVLHLV 70
>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 102
Score = 33.1 bits (75), Expect = 0.019
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 21 ETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKNDEWD--NFKLSNGSMVLL 78
TF + V+ D E F+ +GV + +++ L +D ++ L +G MV+L
Sbjct: 22 VTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVL 81
Query: 79 MGSK 82
+
Sbjct: 82 LQKD 85
>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 100
Score = 31.9 bits (72), Expect = 0.041
Identities = 11/68 (16%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 13 IVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKNDE-WDNFKLS 71
+ + GK V +TD+ K + TG + ++ + K+ ++++
Sbjct: 32 VCNDRLGK-KVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIH 90
Query: 72 NGSMVLLM 79
+G + L
Sbjct: 91 DGMNLELY 98
>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 31.3 bits (71), Expect = 0.043
Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 13 IVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKND 63
+VK + T V FK + + ++Q+++ +G L++D
Sbjct: 4 LVKTLDSQ-TRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDD 53
>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger
domain-containing protein 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 76
Score = 31.0 bits (70), Expect = 0.052
Identities = 12/68 (17%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 14 VKVKWGKETFEV-DVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKNDE-WDNFKLS 71
V+ G +T + DV + +++ L V+ + Q++ +G L+N ++ +
Sbjct: 5 VRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVG 64
Query: 72 NGSMVLLM 79
++ L+
Sbjct: 65 LNDIIQLL 72
>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 31.0 bits (70), Expect = 0.054
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 13 IVKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKNDE-WDNFKLS 71
+V+ G+ + +V + K Q+ L GVQ D + +G L++ + L
Sbjct: 7 LVRNNKGR-SSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLK 65
Query: 72 NGSMVLLM 79
S V +
Sbjct: 66 PLSTVFMN 73
>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 30.2 bits (68), Expect = 0.12
Identities = 14/81 (17%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 9 PHTYIVKVKWGKE---------TFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGAT 59
P + V+V ++ + ++ + K +++E TG+ +QK+ +G
Sbjct: 1 PVSIKVQVPNMQDKTEWKLNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIF 60
Query: 60 LKNDE-WDNFKLSNGSMVLLM 79
+K+ + ++NG+++ L
Sbjct: 61 IKDSNSLAYYNMANGAVIHLA 81
>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic
reticulum-resident ubiquitin-like domain member 1
protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 29.4 bits (66), Expect = 0.29
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 13 IVKVKWGK-ETFEVDVDTDEEPMLFKAQLYELTGVQI--DRQKVMCKGATLKNDE 64
+VK + E+ D KA L + + + Q+++ G L + +
Sbjct: 11 LVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQ 65
>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 105
Score = 29.3 bits (65), Expect = 0.38
Identities = 9/64 (14%), Positives = 22/64 (34%), Gaps = 3/64 (4%)
Query: 14 VKVKWGKETFEVDVDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKNDEWDNFKLSNG 73
V G+ V V + + K + ++ +R+ + + W + L++
Sbjct: 12 VCKMDGE-VMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSY--VWRTYHLTSA 68
Query: 74 SMVL 77
L
Sbjct: 69 GEKL 72
>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding
cofactor B {Nematode (Caenorhabditis elegans) [TaxId:
6239]}
Length = 90
Score = 27.1 bits (60), Expect = 1.8
Identities = 6/78 (7%), Positives = 22/78 (28%), Gaps = 10/78 (12%)
Query: 14 VKVKWGKETFEVD--VDTDEEPMLFKAQLYELTGVQIDRQKVMCKGATLKNDEW------ 65
+++ F ++ K +L + G +D ++ +
Sbjct: 7 LEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAK 66
Query: 66 --DNFKLSNGSMVLLMGS 81
+ + +G + +
Sbjct: 67 SLKDLGVRDGYRIHAVDV 84
>d2a9ua1 a.118.23.1 (A:6-139) Ubiquitin carboxyl-terminal hydrolase
8, USH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 134
Score = 27.9 bits (62), Expect = 1.8
Identities = 9/57 (15%), Positives = 21/57 (36%)
Query: 407 YKEKERINAKVLKDIKFPIEFDAYELCTPELQAKLAPMREKFKIAEEKEAFEEFRTQ 463
+K+++ +L + E + L+ + + K+ E+ E R Q
Sbjct: 74 FKQQQDYFHSILGPGNIKKAVEEAERLSESLKLRYEEAEVRKKLEEKDRQEEAQRLQ 130
>d1rk8c_ b.72.3.1 (C:) Pym (Within the bgcn gene intron protein,
WIBG), N-terminal domain {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 33
Score = 25.3 bits (55), Expect = 2.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 534 TSSSGHYVAWVKKPNGTWIK 553
SS G ++ K+P+GTW K
Sbjct: 4 QSSEGKFIPATKRPDGTWRK 23
>gi|3308969|dbj|BAA31557.1|(36-183:257) macrophage-colony
stimulating factor alpha [Bos taurus]
gi|33114043|gb|AAP94638.1| colony-stimulating factor-1
splice variant [Bos taurus] E=5e-72 s/c=1.84 id=87%
cov=101%
Length = 148
Score = 27.1 bits (60), Expect = 3.7
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 259 FIMLQVLHNVFPRFADKTDDGSYMQQDANECWTEMVRMLKTALPGENEEGQDSAKSSFIE 318
F+++Q + RF D T + + Q E+ LK+ + +E + +F E
Sbjct: 51 FLLVQDIMEDTMRFKDNTPNAKVIVQ-----LQELSLRLKSCFTMDYDEQDKACVRTFHE 105
>d2fzia1 c.71.1.1 (A:1-206) Dihydrofolate reductases, eukaryotic
type {Fungus (Pneumocystis carinii) [TaxId: 4754]}
Length = 206
Score = 26.7 bits (58), Expect = 6.7
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 6/66 (9%)
Query: 412 RINAKVLKDIKFPIEFDAYELCTPELQAKLAPMREKFKIAEEKEAFEEFRTQYVFISIPM 471
I + D+ FP++F E + + K + + E Y F
Sbjct: 145 IIYKDIHCDVFFPLKFRDKEWSSVWKKEKHSDLESWVGTKVPHGKINEDGFDYEF----- 199
Query: 472 DEIYVR 477
E++ R
Sbjct: 200 -EMWTR 204
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.134 0.391
Gapped
Lambda K H
0.267 0.0653 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,103,428
Number of extensions: 98643
Number of successful extensions: 290
Number of sequences better than 10.0: 1
Number of HSP's gapped: 274
Number of HSP's successfully gapped: 42
Length of query: 577
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 487
Effective length of database: 1,171,896
Effective search space: 570713352
Effective search space used: 570713352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.1 bits)