BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7717
(113 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GDK|A Chain A, Crystal Structure Of Human Atg12~atg5 Conjugate In Complex
With An N- Terminal Fragment Of Atg16l1
pdb|4GDK|D Chain D, Crystal Structure Of Human Atg12~atg5 Conjugate In Complex
With An N- Terminal Fragment Of Atg16l1
pdb|4GDL|A Chain A, Crystal Structure Of Human Atg12~atg5 Conjugate In Complex
With An N- Terminal Fragment Of Atg16l1
Length = 91
Score = 111 bits (278), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 49/90 (54%), Positives = 64/90 (71%)
Query: 24 AKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAP 83
+K K+ ILL+A GD PI+ KKW V + + +I F KK +K+ SE LFIYVNQSFAP
Sbjct: 2 SKKKIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAP 61
Query: 84 SPDTTIRALYDSFATNGSLVLNYCKTQAWG 113
SPD + LY+ F ++G LVL+YCK+QAWG
Sbjct: 62 SPDQEVGTLYECFGSDGKLVLHYCKSQAWG 91
>pdb|1WZ3|A Chain A, The Crystal Structure Of Plant Atg12
pdb|1WZ3|B Chain B, The Crystal Structure Of Plant Atg12
Length = 96
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 58/87 (66%), Gaps = 3/87 (3%)
Query: 27 KVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPD 86
K+ + LRATG APIL + K+ V A++I F ++ + S+SLF+YVN +F+P+PD
Sbjct: 13 KIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLH---SDSLFVYVNSAFSPNPD 69
Query: 87 TTIRALYDSFATNGSLVLNYCKTQAWG 113
++ LY++F +G LV+NY + AWG
Sbjct: 70 ESVIDLYNNFGFDGKLVVNYACSMAWG 96
>pdb|3W1S|C Chain C, Crystal Structure Of Saccharomyces Cerevisiae Atg12-Atg5
Conjugate Bound To The N-Terminal Domain Of Atg16
Length = 91
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 21 GAEAKV-KVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQ 79
GA + K+ I + G L + + Q+ A +I F K+ +KMD ++ Y+N
Sbjct: 1 GAHMNIQKIQIKFQPIGSIGQLKPSVCKISMSQSFAMVILFLKRRLKMD---HVYCYINN 57
Query: 80 SFAPSPDTTIRALYDSFATNGSLVLNYCKTQAWG 113
SFAPSP I L+ F TN L+++YC + A+G
Sbjct: 58 SFAPSPQQNIGELWMQFKTNDELIVSYCASVAFG 91
>pdb|3RUI|B Chain B, Crystal Structure Of Atg7c-Atg8 Complex
Length = 118
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 11 EGSAPSSPSIGAEAKVKVPILLRAT--GDAPILTKKKWLVHVDQNVASIISFTKKSIKMD 68
E S I K ++P++ D P + K+K+LV D V + +K I +
Sbjct: 14 EKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLP 73
Query: 69 PSESLFIYVNQSFAPSPDTTIRALYDSFA-TNGSLVLNYCKTQAWG 113
P +++FI+VN + P+ + A+Y +G L + Y +G
Sbjct: 74 PEKAIFIFVNDTLPPTA-ALMSAIYQEHKDKDGFLYVTYSGENTFG 118
>pdb|2ZPN|A Chain A, The Crystal Structure Of Saccharomyces Cerevisiae Atg8-
Atg19(412-415) Complex
pdb|2ZPN|B Chain B, The Crystal Structure Of Saccharomyces Cerevisiae Atg8-
Atg19(412-415) Complex
pdb|2ZPN|C Chain C, The Crystal Structure Of Saccharomyces Cerevisiae Atg8-
Atg19(412-415) Complex
pdb|2ZPN|D Chain D, The Crystal Structure Of Saccharomyces Cerevisiae Atg8-
Atg19(412-415) Complex
pdb|3VXW|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg8
Complexed With Atg32 Aim
Length = 119
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 11 EGSAPSSPSIGAEAKVKVPILLRAT--GDAPILTKKKWLVHVDQNVASIISFTKKSIKMD 68
E S I K ++P++ D P + K+K+LV D V + +K I +
Sbjct: 15 EKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLP 74
Query: 69 PSESLFIYVNQSFAPSPDTTIRALYDSFA-TNGSLVLNYCKTQAWG 113
P +++FI+VN + P+ + A+Y +G L + Y +G
Sbjct: 75 PEKAIFIFVNDTLPPTA-ALMSAIYQEHKDKDGFLYVTYSGENTFG 119
>pdb|2KQ7|A Chain A, Solution Structure Of The Autophagy-Related Protein Atg8
Length = 119
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 11 EGSAPSSPSIGAEAKVKVPILLRAT--GDAPILTKKKWLVHVDQNVASIISFTKKSIKMD 68
E S I K ++P++ D P + K+K+LV D V + +K I +
Sbjct: 14 EKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLP 73
Query: 69 PSESLFIYVNQSFAPSPDTTIRALYDSFA-TNGSLVLNYCKTQAWG 113
P +++FI+VN + P+ + A+Y +G L + Y +G
Sbjct: 74 PEKAIFIFVNDTLPPTA-ALMSAIYQEHKDKDGFLYVTYSGENTFG 118
>pdb|3ECI|A Chain A, Microtubule-Associated Protein 1 Light Chain 3 Alpha
Isoform A (Map1alc3)
pdb|3ECI|B Chain B, Microtubule-Associated Protein 1 Light Chain 3 Alpha
Isoform A (Map1alc3)
Length = 122
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 51/91 (56%), Gaps = 4/91 (4%)
Query: 27 KVPILL-RATGDA--PILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAP 83
K+P+++ R G+ P+L K K+LV N++ ++ ++ ++++P+++ F+ VNQ
Sbjct: 31 KIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMV 90
Query: 84 SPDTTIRALYDSFA-TNGSLVLNYCKTQAWG 113
S T I +Y+ +G L + Y + +G
Sbjct: 91 SVSTPIADIYEQEKDEDGFLYMVYASQETFG 121
>pdb|3VH3|B Chain B, Crystal Structure Of Atg7ctd-Atg8 Complex
pdb|3VH4|B Chain B, Crystal Structure Of Atg7ctd-Atg8-Mgatp Complex
Length = 119
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 27 KVPILLRAT--GDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPS 84
++P++ D P + K+K+LV D V + +K I + P +++FI+VN + P+
Sbjct: 31 RIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPT 90
Query: 85 PDTTIRALYDSFA-TNGSLVLNYCKTQAWG 113
+ A+Y +G L + Y +G
Sbjct: 91 A-ALMSAIYQEHKDKDGFLYVTYSGENTFG 119
>pdb|2KWC|A Chain A, The Nmr Structure Of The Autophagy-Related Protein Atg8
Length = 116
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 27 KVPILLRAT--GDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPS 84
++P++ D P + K+K+LV D V + +K I + P +++FI+VN + P+
Sbjct: 28 RIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPT 87
Query: 85 PDTTIRALYDSFA-TNGSLVLNYCKTQAWG 113
+ A+Y +G L + Y +G
Sbjct: 88 A-ALMSAIYQEHKDKDGFLYVTYSGENTFG 116
>pdb|2LI5|A Chain A, Nmr Structure Of Atg8-Atg7c30 Complex
Length = 117
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 27 KVPILLRAT--GDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPS 84
++P++ D P + K+K+LV D V + +K I + P +++FI+VN + P+
Sbjct: 29 RIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPT 88
Query: 85 PDTTIRALYDSFA-TNGSLVLNYCKTQAWG 113
+ A+Y +G L + Y +G
Sbjct: 89 A-ALMSAIYQEHKDKDGFLYVTYSGENTFG 117
>pdb|2L8J|A Chain A, Gabarapl-1 Nbr1-Lir Complex Structure
Length = 119
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 27 KVPILLRATGDA--PILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPS 84
+VP+++ A P L K+K+LV D V +K I + P ++LF +VN + P+
Sbjct: 32 RVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPT 91
Query: 85 PDTTIRALYDSFATNGSLVLNYC 107
T + D+ + L + Y
Sbjct: 92 SATMGQLYEDNHEEDYFLYVAYS 114
>pdb|2R2Q|A Chain A, Crystal Structure Of Human Gamma-Aminobutyric Acid
Receptor- Associated Protein-Like 1 (Gabarap1), Isoform
Cra_a
pdb|2R2Q|B Chain B, Crystal Structure Of Human Gamma-Aminobutyric Acid
Receptor- Associated Protein-Like 1 (Gabarap1), Isoform
Cra_a
Length = 110
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 27 KVPILLRATGDA--PILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPS 84
+VP+++ A P L K+K+LV D V +K I + P ++LF +VN + P+
Sbjct: 27 RVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPT 86
Query: 85 PDTTIRALYDSFATNGSLVLNYC 107
T + D+ + L + Y
Sbjct: 87 SATMGQLYEDNHEEDYFLYVAYS 109
>pdb|1EO6|A Chain A, Crystal Structure Of Gate-16
pdb|1EO6|B Chain B, Crystal Structure Of Gate-16
Length = 117
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 7 DNTPEGSAPSSPSIGAEAKVKVPILLRATGDAPI--LTKKKWLVHVDQNVASIISFTKKS 64
D++ E S I A+ +VP+++ + I + K+K+LV D VA + +K
Sbjct: 8 DHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKR 67
Query: 65 IKMDPSESLFIYVNQSFAPSPDTTIRALYDSFA-TNGSLVLNYCKTQAWG 113
I++ +++F++V+++ P T+ LY+ +G L + Y +G
Sbjct: 68 IQLPSEKAIFLFVDKT-VPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116
>pdb|1KOT|A Chain A, Solution Structure Of Human Gaba Receptor Associated
Protein Gabarap
pdb|3D32|A Chain A, Complex Of Gaba(a) Receptor-associated Protein (gabarap)
With A Synthetic Peptide
pdb|3D32|B Chain B, Complex Of Gaba(a) Receptor-associated Protein (gabarap)
With A Synthetic Peptide
pdb|3DOW|A Chain A, Complex Structure Of Gaba Type A Receptor Associated
Protein And Its Binding Epitope On Calreticulin
Length = 119
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 27 KVPILLRATGDAPI--LTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPS 84
+VP+++ A I L KKK+LV D V +K I + ++LF +VN P+
Sbjct: 30 RVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPT 89
Query: 85 PDTTIRALYDSFATNGSLVLNYCKTQAWG 113
T + + + L + Y +G
Sbjct: 90 SATMGQLYQEHHEEDFFLYIAYSDESVYG 118
>pdb|1GNU|A Chain A, Gaba(a) Receptor Associated Protein Gabarap
pdb|1KLV|A Chain A, Solution Structure And Backbone Dynamics Of Gabarap, Gabaa
Receptor Associated Protein
pdb|1KM7|A Chain A, Solution Structure And Backbone Dynamics Of Gabarap, Gabaa
Receptor Associated Protein
Length = 117
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 27 KVPILLRATGDAPI--LTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPS 84
+VP+++ A I L KKK+LV D V +K I + ++LF +VN P+
Sbjct: 28 RVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPT 87
Query: 85 PDTTIRALYDSFATNGSLVLNYCKTQAWG 113
T + + + L + Y +G
Sbjct: 88 SATMGQLYQEHHEEDFFLYIAYSDESVYG 116
>pdb|3M95|A Chain A, Crystal Structure Of Autophagy-Related Protein Atg8 From
The Silkworm Bombyx Mori
pdb|3M95|B Chain B, Crystal Structure Of Autophagy-Related Protein Atg8 From
The Silkworm Bombyx Mori
Length = 125
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 27 KVPILLRATGDAPI--LTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPS 84
+VP+++ A + L KKK+LV D V +K I + P ++LF +VN P+
Sbjct: 36 RVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPT 95
Query: 85 PDTTIRALY 93
T+ +LY
Sbjct: 96 -SATMGSLY 103
>pdb|1KJT|A Chain A, Crystal Structure Of The Gaba(A) Receptor Associated
Protein, Gabarap
Length = 119
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 27 KVPILLRATGDAPI--LTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPS 84
+VP+++ A I L KKK+LV D V +K I + ++LF +VN P+
Sbjct: 30 RVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPT 89
Query: 85 PDTTIRALYDSFATNGSLVLNYCKTQAWG 113
T + + + L + Y +G
Sbjct: 90 SATMGQLYQEHHEEDFFLYIAYSDESVYG 118
>pdb|3H9D|A Chain A, Crystal Structure Of Trypanosoma Brucei Atg8
pdb|3H9D|B Chain B, Crystal Structure Of Trypanosoma Brucei Atg8
Length = 119
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 27 KVPILLRATGDAPI--LTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPS 84
++PI+ ++ I L + K+LV D V +S +K ++++ +LF+Y N + PS
Sbjct: 31 RLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPS 90
Query: 85 PDTTIRALYDSFA-TNGSLVLNYCKTQAWG 113
+ +Y + +G L + Y +G
Sbjct: 91 S-AQMADIYSKYKDEDGFLYMKYSGEATFG 119
>pdb|3OT1|A Chain A, Crystal Structure Of Vc2308 Protein
Length = 208
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 79 QSFAPSPDTTIRALYDSFATNGSLVLNYCKTQA 111
Q+FA S T + AL D+F+ G LV C T A
Sbjct: 85 QAFADS--TALLALIDAFSQQGKLVAAICATPA 115
>pdb|3VGG|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(E283q) Complexed With Maltoheptaose
pdb|3VGH|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(E283q) Complexed With Maltotriosyltrehalose
Length = 558
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 40 ILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSF 81
++ + WL+ + S+ F+K SI++ S +L + N SF
Sbjct: 497 VVNGENWLIIKGREYFSLYVFSKSSIEVKYSGTLLLSSNNSF 538
>pdb|3VGD|A Chain A, Ctystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252e)
Length = 558
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 40 ILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSF 81
++ + WL+ + S+ F+K SI++ S +L + N SF
Sbjct: 497 VVNGENWLIIKGREYFSLYVFSKSSIEVKYSGTLLLSSNNSF 538
>pdb|1EH9|A Chain A, Crystal Structure Of Sulfolobus Solfataricus
Glycosyltrehalose Trehalohydrolase
pdb|3VGB|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(Gthase) From Sulfolobus Solfataricus Km1
Length = 558
Score = 25.8 bits (55), Expect = 5.5, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 40 ILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSF 81
++ + WL+ + S+ F+K SI++ S +L + N SF
Sbjct: 497 VVNGENWLIIKGREYFSLYVFSKSSIEVKYSGTLLLSSNNSF 538
>pdb|3VGE|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252s)
pdb|3VGF|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252s) Complexed With Maltotriosyltrehalose
Length = 558
Score = 25.8 bits (55), Expect = 5.8, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 40 ILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSF 81
++ + WL+ + S+ F+K SI++ S +L + N SF
Sbjct: 497 VVNGENWLIIKGREYFSLYVFSKSSIEVKYSGTLLLSSNNSF 538
>pdb|1EHA|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
From Sulfolobus Solfataricus
Length = 558
Score = 25.8 bits (55), Expect = 5.8, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 40 ILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSF 81
++ + WL+ + S+ F+K SI++ S +L + N SF
Sbjct: 497 VVNGENWLIIKGREYFSLYVFSKSSIEVKYSGTLLLSSNNSF 538
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.128 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,353,035
Number of Sequences: 62578
Number of extensions: 113364
Number of successful extensions: 208
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 181
Number of HSP's gapped (non-prelim): 27
length of query: 113
length of database: 14,973,337
effective HSP length: 77
effective length of query: 36
effective length of database: 10,154,831
effective search space: 365573916
effective search space used: 365573916
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)