Query psy7717
Match_columns 113
No_of_seqs 102 out of 427
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 17:00:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7717.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7717hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h9d_A ATG8, microtubule-assoc 100.0 3.4E-41 1.2E-45 236.0 8.7 96 17-113 21-119 (119)
2 3rui_B Autophagy-related prote 100.0 4.9E-41 1.7E-45 234.9 9.5 96 17-113 20-118 (118)
3 3m95_A Autophagy related prote 100.0 4.9E-41 1.7E-45 237.0 9.0 96 17-113 26-124 (125)
4 4gdk_A Ubiquitin-like protein 100.0 1.4E-38 4.7E-43 213.7 11.5 88 26-113 4-91 (91)
5 1eo6_A GATE-16, golgi-associat 100.0 5.5E-39 1.9E-43 224.0 9.1 96 17-113 18-116 (117)
6 2zjd_A Microtubule-associated 100.0 3.3E-39 1.1E-43 228.9 6.9 96 17-113 25-125 (130)
7 3w1s_C Ubiquitin-like protein 100.0 1.6E-37 5.3E-42 208.6 10.6 87 24-113 5-91 (91)
8 1wz3_A Autophagy 12B, ATG12B, 100.0 2.1E-37 7.1E-42 209.8 9.3 87 24-113 10-96 (96)
9 2r2q_A Gamma-aminobutyric acid 100.0 1.1E-35 3.8E-40 205.2 8.8 91 17-108 17-110 (110)
10 3vqi_A ATG5; autophagy, E3-lik 95.0 0.012 3.9E-07 45.7 2.5 73 24-105 196-272 (274)
11 2dyo_A Autophagy protein 5; ub 94.8 0.015 5E-07 45.5 2.6 81 25-107 200-285 (297)
12 2k8h_A Small ubiquitin protein 93.8 0.67 2.3E-05 31.0 9.0 65 22-92 21-85 (110)
13 3goe_A DNA repair protein RAD6 92.9 0.1 3.5E-06 33.7 3.5 48 43-91 21-68 (82)
14 3a4r_A Nfatc2-interacting prot 91.9 0.89 3.1E-05 28.1 7.0 63 25-92 5-67 (79)
15 4gdk_B Autophagy protein 5; pr 91.3 0.3 1E-05 37.7 5.1 82 26-108 183-271 (275)
16 2jxx_A Nfatc2-interacting prot 90.1 1.8 6.2E-05 28.2 7.5 67 21-92 19-85 (97)
17 2io0_B Small ubiquitin-related 89.5 0.62 2.1E-05 29.9 4.7 62 25-92 3-64 (91)
18 1wyw_B Ubiquitin-like protein 89.2 1.3 4.4E-05 28.1 6.1 77 23-107 17-93 (97)
19 1wz0_A Ubiquitin-like protein 87.5 1.9 6.5E-05 28.3 6.2 63 24-92 21-83 (104)
20 2io1_B Small ubiquitin-related 86.5 0.84 2.9E-05 29.4 3.9 62 25-92 5-66 (94)
21 1uh6_A Ubiquitin-like 5; beta- 86.0 5.5 0.00019 26.1 8.5 74 24-107 25-100 (100)
22 2eke_C Ubiquitin-like protein 85.6 1.8 6.3E-05 28.6 5.3 62 24-92 28-89 (106)
23 2d07_B Ubiquitin-like protein 85.3 1.2 4.3E-05 28.4 4.3 63 24-92 14-76 (93)
24 2uyz_B Small ubiquitin-related 84.4 3.8 0.00013 24.4 6.1 73 27-107 3-75 (79)
25 1wm3_A Ubiquitin-like protein 82.9 0.87 3E-05 27.5 2.6 48 43-92 13-60 (72)
26 1ttn_A DC-UBP, dendritic cell- 82.1 7.7 0.00026 24.8 8.8 73 26-108 22-96 (106)
27 3plu_A Ubiquitin-like modifier 80.2 9.7 0.00033 24.7 8.4 80 17-106 11-92 (93)
28 3mtn_B UBA80, ubcep1, ubiquiti 80.1 7.2 0.00025 23.1 6.8 73 27-107 3-75 (85)
29 3kyd_D Small ubiquitin-related 79.0 2.6 9E-05 28.4 4.2 63 24-92 37-99 (115)
30 1vd2_A Protein kinase C, IOTA 76.1 9.9 0.00034 24.4 6.1 54 44-97 18-75 (89)
31 1yqb_A Ubiquilin 3; structural 76.0 12 0.00042 23.6 9.7 78 22-108 17-94 (100)
32 3a9j_A Ubiquitin; protein comp 75.9 7.4 0.00025 22.4 5.2 57 45-107 14-72 (76)
33 1ndd_A NEDD8, protein (ubiquit 75.9 8.2 0.00028 22.2 5.4 57 45-107 14-72 (76)
34 1oey_A P67-PHOX, neutrophil cy 74.8 5.6 0.00019 25.4 4.6 59 46-105 18-79 (83)
35 1wx7_A Ubiquilin 3; ubiquitin- 74.7 14 0.00046 23.5 11.0 74 25-107 15-88 (106)
36 3dbh_I NEDD8; cell cycle, acti 74.4 11 0.00039 22.4 6.3 73 26-106 11-83 (88)
37 1wh3_A 59 kDa 2'-5'-oligoadeny 72.5 13 0.00044 22.2 9.7 75 25-107 5-79 (87)
38 3n3k_B Ubiquitin; hydrolase, p 72.4 7.5 0.00026 23.1 4.7 73 27-107 3-75 (85)
39 2klc_A Ubiquilin-1; ubiquitin- 71.7 16 0.00056 23.0 7.2 74 23-107 21-96 (101)
40 2kvr_A Ubiquitin carboxyl-term 71.4 2.9 9.9E-05 28.5 2.8 55 44-98 58-119 (130)
41 1we7_A SF3A1 protein; structur 70.7 18 0.00063 23.2 8.8 86 18-107 16-107 (115)
42 1wx8_A Riken cDNA 4931431F19; 69.5 17 0.00058 22.3 8.2 71 25-106 15-87 (96)
43 2hj8_A Interferon-induced 17 k 69.3 17 0.00057 22.2 9.3 74 27-108 4-77 (88)
44 1wy8_A NP95-like ring finger p 69.1 16 0.00055 22.0 7.3 75 26-107 6-81 (89)
45 4hcn_B Polyubiquitin, ubiquiti 69.0 13 0.00045 23.2 5.4 76 21-106 16-93 (98)
46 2wyq_A HHR23A, UV excision rep 68.2 16 0.00055 21.6 7.5 75 25-109 3-82 (85)
47 3b08_A Polyubiquitin-C, ubiqui 67.7 23 0.00077 23.1 7.7 59 43-107 88-148 (152)
48 1yx5_B Ubiquitin; proteasome, 67.3 14 0.00047 22.9 5.3 58 45-108 14-73 (98)
49 3k9o_B Ubiquitin, UBB+1; E2-25 66.4 13 0.00045 22.7 5.0 59 45-107 15-73 (96)
50 2l7r_A Ubiquitin-like protein 65.8 21 0.00072 22.1 6.7 73 24-106 16-88 (93)
51 2l76_A Nfatc2-interacting prot 65.7 7.4 0.00025 25.5 3.8 64 26-98 20-83 (95)
52 4fbj_B NEDD8; effector-HOST ta 61.7 13 0.00044 22.7 4.3 59 45-107 14-72 (88)
53 1j0g_A Hypothetical protein 18 61.2 30 0.001 22.3 8.7 72 26-99 9-80 (92)
54 1yfb_A Transition state regula 60.6 8.7 0.0003 22.7 3.1 21 59-79 28-48 (59)
55 1ip9_A BEM1 protein; ubiquitin 59.3 9.8 0.00034 24.5 3.4 30 46-76 26-55 (85)
56 1mvf_D MAZE protein, PEMI-like 59.1 6.6 0.00023 24.1 2.5 41 59-99 19-65 (82)
57 3tuo_A DNA-binding protein SAT 58.7 37 0.0013 22.6 7.3 69 27-95 7-93 (105)
58 4dwf_A HLA-B-associated transc 58.4 27 0.00094 20.9 6.6 73 25-107 3-76 (90)
59 1j8c_A Ubiquitin-like protein 57.9 37 0.0013 22.3 8.3 72 25-107 30-103 (125)
60 2l66_A SSO7C4, transcriptional 57.3 12 0.0004 21.3 3.2 21 59-79 18-38 (53)
61 2kc2_A Talin-1, F1; FERM, adhe 56.6 21 0.00073 24.3 5.0 40 38-78 18-57 (128)
62 2dzi_A Ubiquitin-like protein 56.6 27 0.00092 20.3 7.0 70 26-105 6-77 (81)
63 4a3p_A Ubiquitin carboxyl-term 55.2 31 0.001 24.9 6.0 62 44-107 142-208 (217)
64 3tix_A Ubiquitin-like protein 54.7 9.8 0.00034 28.3 3.2 62 24-92 54-115 (207)
65 2diu_A KIAA0430 protein; struc 54.5 16 0.00055 23.8 3.9 41 67-110 5-57 (96)
66 1we6_A Splicing factor, putati 53.9 23 0.00077 22.6 4.6 91 10-107 10-103 (111)
67 2kan_A Uncharacterized protein 53.7 37 0.0013 21.0 7.7 76 23-107 11-87 (94)
68 3gs2_A E3 ubiquitin-protein li 53.4 48 0.0016 22.2 8.4 82 27-108 3-109 (111)
69 1v86_A DNA segment, CHR 7, way 53.3 38 0.0013 21.0 5.5 58 26-92 16-74 (95)
70 1v6e_A Cytoskeleton-associated 52.8 38 0.0013 20.9 6.2 47 27-76 7-54 (95)
71 3nyi_A FAT acid-binding protei 49.9 37 0.0013 25.7 5.9 74 26-109 3-95 (297)
72 1wgd_A Homocysteine-responsive 49.6 42 0.0014 20.4 6.1 74 27-106 7-84 (93)
73 3m62_B UV excision repair prot 49.3 22 0.00074 22.6 3.9 59 45-107 15-73 (106)
74 3pge_A SUMO-modified prolifera 48.7 20 0.00067 26.2 4.0 62 24-92 26-87 (200)
75 1q1o_A Cell division control p 48.2 18 0.0006 23.7 3.3 28 43-70 24-51 (98)
76 2e5i_A Heterogeneous nuclear r 47.6 19 0.00064 23.9 3.5 31 68-98 21-51 (124)
77 2al3_A TUG long isoform; TUG U 47.5 15 0.00051 23.7 2.8 41 39-80 17-57 (90)
78 3v6c_B Ubiquitin; structural g 46.3 47 0.0016 20.0 6.0 72 24-105 14-87 (91)
79 1wjn_A Tubulin-folding protein 45.3 52 0.0018 20.3 7.4 51 26-77 8-59 (97)
80 1v2y_A 3300001G02RIK protein; 45.2 18 0.00063 23.5 3.1 62 46-111 22-99 (105)
81 2ojr_A Ubiquitin; lanthide-bin 45.0 57 0.0019 20.6 6.8 72 26-107 34-107 (111)
82 2kdb_A Homocysteine-responsive 43.5 39 0.0013 21.5 4.4 75 25-104 21-98 (99)
83 4eew_A Large proline-rich prot 43.2 51 0.0017 19.6 6.5 63 23-91 13-75 (88)
84 1wgk_A Riken cDNA 2900073H19 p 43.1 68 0.0023 21.0 6.6 53 28-80 12-81 (114)
85 3rt3_B Ubiquitin-like protein 42.7 31 0.0011 23.0 4.1 58 45-107 16-76 (159)
86 4da1_A Protein phosphatase 1K, 42.5 5.2 0.00018 31.3 0.0 77 24-107 27-113 (389)
87 2krb_A Eukaryotic translation 41.7 28 0.00095 20.2 3.3 33 75-109 4-57 (81)
88 2bwf_A Ubiquitin-like protein 41.6 42 0.0015 19.1 4.1 57 44-106 16-74 (77)
89 3phx_B Ubiquitin-like protein 41.5 51 0.0017 19.1 6.0 70 27-106 4-75 (79)
90 1v5o_A 1700011N24RIK protein; 41.4 63 0.0021 20.1 8.0 74 27-106 7-83 (102)
91 2l32_A Small archaeal modifier 40.5 39 0.0013 20.4 3.9 38 43-85 12-49 (74)
92 3u30_A Ubiquitin, linear DI-ub 40.4 83 0.0028 21.2 6.2 75 22-106 15-91 (172)
93 2lxa_A Ubiquitin-like protein 40.3 47 0.0016 20.6 4.3 42 49-92 21-63 (87)
94 3d2w_A TAR DNA-binding protein 40.3 24 0.00082 21.3 2.9 35 75-110 14-59 (89)
95 4efo_A Serine/threonine-protei 40.2 72 0.0025 20.5 5.7 54 27-83 12-65 (94)
96 2nlw_A Eukaryotic translation 39.8 39 0.0013 20.7 3.9 11 100-110 62-72 (105)
97 4dbg_A Ranbp-type and C3HC4-ty 39.5 77 0.0026 20.6 6.4 61 27-91 24-84 (105)
98 1pzx_A Hypothetical protein AP 38.7 45 0.0015 25.1 4.7 53 45-109 38-92 (289)
99 2xnq_A Nuclear polyadenylated 38.7 39 0.0013 20.5 3.7 23 86-108 37-66 (97)
100 1x1m_A Ubiquitin-like protein 37.6 75 0.0026 19.9 7.9 55 51-108 44-100 (107)
101 3rpf_C Molybdopterin convertin 37.3 49 0.0017 19.5 3.9 42 45-87 15-57 (74)
102 1v5t_A 8430435I17RIK protein; 37.0 70 0.0024 19.4 5.0 58 47-107 23-82 (90)
103 3m63_B Ubiquitin domain-contai 36.8 40 0.0014 21.2 3.6 70 15-91 16-85 (101)
104 3zzy_A Polypyrimidine tract-bi 36.8 32 0.0011 23.1 3.3 34 65-98 21-54 (130)
105 2kvi_A Nuclear polyadenylated 36.5 37 0.0013 20.4 3.3 33 75-109 13-55 (96)
106 3fdj_A DEGV family protein; GU 35.9 93 0.0032 23.2 6.1 69 27-109 3-86 (278)
107 2fnj_B Transcription elongatio 35.1 98 0.0034 20.5 6.7 64 46-112 16-85 (118)
108 2pjh_A Protein NPL4, nuclear p 34.8 20 0.00069 21.9 1.9 29 47-75 19-48 (80)
109 1wxv_A BAG-family molecular ch 34.6 76 0.0026 19.1 7.5 71 26-106 6-83 (92)
110 2kj6_A Tubulin folding cofacto 34.3 87 0.003 19.7 8.5 50 25-76 12-62 (97)
111 1pqs_A Cell division control p 33.6 29 0.00099 21.5 2.5 23 46-68 6-28 (77)
112 1ryj_A Unknown; beta/alpha pro 33.6 73 0.0025 18.6 4.6 36 45-85 17-52 (70)
113 3jyu_A Ubiquitin carboxyl-term 33.3 69 0.0023 23.3 4.9 61 45-107 155-220 (231)
114 2dzm_A FAS-associated factor 1 32.8 78 0.0027 20.2 4.6 57 46-106 23-80 (100)
115 2kk8_A Uncharacterized protein 32.8 82 0.0028 18.9 7.9 75 25-106 8-82 (84)
116 2dt8_A DEGV family protein; fa 32.4 99 0.0034 23.0 5.8 53 46-109 37-91 (280)
117 2faz_A Ubiquitin-like containi 32.4 67 0.0023 18.4 4.0 56 45-106 17-75 (78)
118 3ivf_A Talin-1; FERM domain, c 31.9 1.1E+02 0.0037 23.3 6.0 40 38-77 92-131 (371)
119 1sif_A Ubiquitin; hydrophobic 31.7 62 0.0021 19.5 3.8 70 28-107 10-81 (88)
120 1x5p_A Negative elongation fac 31.3 52 0.0018 19.7 3.4 33 75-109 18-59 (97)
121 1sjq_A Polypyrimidine tract-bi 31.3 52 0.0018 21.1 3.5 36 72-109 16-62 (105)
122 2ylm_A Ubiquitin carboxyl-term 30.8 1.6E+02 0.0055 24.1 7.2 67 27-95 239-313 (530)
123 1f0z_A THis protein; ubiquitin 30.8 66 0.0023 18.4 3.7 36 44-84 8-43 (66)
124 2ylm_A Ubiquitin carboxyl-term 30.2 45 0.0015 27.4 3.7 81 26-106 129-216 (530)
125 3vdz_A Ubiquitin-40S ribosomal 29.8 1.1E+02 0.0037 19.4 6.5 72 26-107 34-107 (111)
126 3fys_A Protein DEGV; fatty aci 29.7 1.2E+02 0.0041 23.1 5.9 77 22-109 31-125 (315)
127 1uel_A HHR23B, UV excision rep 29.3 99 0.0034 18.8 6.5 58 45-108 14-76 (95)
128 1x4c_A Splicing factor, argini 29.3 77 0.0026 19.4 4.0 33 75-109 18-60 (108)
129 2w1t_A Spovt, stage V sporulat 28.5 50 0.0017 23.7 3.3 21 59-79 20-40 (178)
130 1wju_A NEDD8 ultimate buster-1 27.6 1.2E+02 0.0042 19.4 8.0 48 42-91 30-77 (100)
131 2bz2_A Negative elongation fac 27.4 50 0.0017 21.1 2.9 33 75-109 42-83 (121)
132 3b1l_X E3 ubiquitin-protein li 32.8 13 0.00046 21.5 0.0 45 45-91 14-58 (76)
133 3onh_A Ubiquitin-activating en 26.5 1E+02 0.0036 20.9 4.5 61 43-105 7-77 (127)
134 1wf9_A NPL4 family protein; be 25.9 1.3E+02 0.0043 18.9 5.6 71 28-109 8-96 (107)
135 4f25_A Polyadenylate-binding p 24.9 59 0.002 20.3 2.9 22 75-98 8-31 (115)
136 1tyg_B YJBS; alpha beta barrel 24.7 66 0.0023 20.1 3.0 39 42-85 26-65 (87)
137 2wbr_A GW182, gawky, LD47780P; 24.7 1.1E+02 0.0037 19.4 4.1 37 72-109 7-53 (89)
138 3beg_B Splicing factor, argini 24.6 73 0.0025 19.8 3.3 34 75-110 19-62 (115)
139 2kjr_A CG11242; UBL, ubiquitin 24.4 1.3E+02 0.0046 18.6 8.6 67 23-91 11-81 (95)
140 3cmm_A Ubiquitin-activating en 23.6 81 0.0028 28.3 4.3 50 45-97 921-981 (1015)
141 2kd0_A LRR repeats and ubiquit 23.4 1.3E+02 0.0043 18.0 4.8 56 45-106 25-82 (85)
142 2qjl_A URM1, ubiquitin-related 23.2 84 0.0029 19.5 3.4 36 46-81 24-73 (99)
143 1t0y_A Tubulin folding cofacto 23.2 1.6E+02 0.0053 19.0 7.9 48 26-76 5-53 (122)
144 1sjr_A Polypyrimidine tract-bi 22.8 1E+02 0.0035 21.5 4.0 31 68-98 42-72 (164)
145 2g1e_A Hypothetical protein TA 22.5 1.2E+02 0.004 18.0 3.9 40 44-83 17-66 (90)
146 2kzr_A Ubiquitin thioesterase 22.1 71 0.0024 19.1 2.8 56 48-108 17-78 (86)
147 3b08_A Polyubiquitin-C, ubiqui 21.8 1.1E+02 0.0039 19.5 4.0 57 45-107 14-72 (152)
148 2i1s_A Hypothetical protein; m 21.7 2.1E+02 0.0071 19.9 7.4 41 29-70 10-50 (188)
149 2mss_A Protein (musashi1); RNA 20.4 87 0.003 17.4 2.8 10 100-109 42-51 (75)
150 1wgh_A Ubiquitin-like 3, HCG-1 20.3 1.9E+02 0.0064 18.9 6.8 62 25-91 14-82 (116)
151 2jvr_A Nucleolar protein 3; RN 20.2 1.5E+02 0.0052 18.7 4.2 43 65-109 21-77 (111)
No 1
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=100.00 E-value=3.4e-41 Score=236.03 Aligned_cols=96 Identities=21% Similarity=0.482 Sum_probs=90.9
Q ss_pred CccccccCCCeeEEEEEec--CCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHH
Q psy7717 17 SPSIGAEAKVKVPILLRAT--GDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYD 94 (113)
Q Consensus 17 ~~~i~~k~p~kVpVi~e~~--~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~ 94 (113)
+..||++||+|||||||+. +++|.|+++||+||.++||++|+.+||++|+|+++++|||||||+ +|++|++||+||+
T Consensus 21 ~~~ir~kyP~rIPVIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~-~p~~~~~m~~lY~ 99 (119)
T 3h9d_A 21 AAKVRERHPDRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDT-VLPSSAQMADIYS 99 (119)
T ss_dssp HHHHHHHSTTEEEEEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTE-ECCTTSBHHHHHH
T ss_pred HHHHHHHCCCeEEEEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCc-CCCccchHHHHHH
Confidence 5679999999999999986 579999999999999999999999999999999999999999998 7999999999999
Q ss_pred hcCC-CCEEEEEEccccccC
Q psy7717 95 SFAT-NGSLVLNYCKTQAWG 113 (113)
Q Consensus 95 ~~kd-DGfLyi~Ys~~~afG 113 (113)
+|+| ||||||+||+++|||
T Consensus 100 ~~kd~DGfLyv~Ys~e~~fG 119 (119)
T 3h9d_A 100 KYKDEDGFLYMKYSGEATFG 119 (119)
T ss_dssp HHCCTTSCEEEEEECC-CC-
T ss_pred HcCCCCCeEEEEEecccccC
Confidence 9999 999999999999999
No 2
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=100.00 E-value=4.9e-41 Score=234.91 Aligned_cols=96 Identities=27% Similarity=0.559 Sum_probs=92.5
Q ss_pred CccccccCCCeeEEEEEec--CCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHH
Q psy7717 17 SPSIGAEAKVKVPILLRAT--GDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYD 94 (113)
Q Consensus 17 ~~~i~~k~p~kVpVi~e~~--~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~ 94 (113)
+..||+|||+|||||||+. +++|.|+++||+||.++||++|+.+||++|+|+++++||||||| ++|++|++||+||+
T Consensus 20 ~~~ir~kyP~riPVIvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~-~~p~~~~~m~~lY~ 98 (118)
T 3rui_B 20 SERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVND-TLPPTAALMSAIYQ 98 (118)
T ss_dssp HHHHHHHCSSEEEEEEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTT-BCCCTTSBHHHHHH
T ss_pred HHHHHHhCCCceEEEEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECC-ccCCccchHHHHHH
Confidence 5679999999999999987 57999999999999999999999999999999999999999999 58999999999999
Q ss_pred hcCC-CCEEEEEEccccccC
Q psy7717 95 SFAT-NGSLVLNYCKTQAWG 113 (113)
Q Consensus 95 ~~kd-DGfLyi~Ys~~~afG 113 (113)
+||| ||||||+||+++|||
T Consensus 99 ~~kdeDGfLyv~Ys~~~~fG 118 (118)
T 3rui_B 99 EHKDKDGFLYVTYSGENTFG 118 (118)
T ss_dssp HHCCTTSCEEEEEEECCCBC
T ss_pred HcCCCCCeEEEEEeccccCC
Confidence 9999 999999999999999
No 3
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=100.00 E-value=4.9e-41 Score=236.98 Aligned_cols=96 Identities=25% Similarity=0.469 Sum_probs=91.6
Q ss_pred CccccccCCCeeEEEEEec--CCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHH
Q psy7717 17 SPSIGAEAKVKVPILLRAT--GDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYD 94 (113)
Q Consensus 17 ~~~i~~k~p~kVpVi~e~~--~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~ 94 (113)
+..||+|||+|||||||+. +++|.|+|+||+||+++||++|+.+||++|+|+++++||||||| ++|++|++||+||+
T Consensus 26 ~~~ir~kyP~rIPVIvEr~~~s~lP~LdK~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn-~lPs~s~~m~~lY~ 104 (125)
T 3m95_A 26 GEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNN-VIPPTSATMGSLYQ 104 (125)
T ss_dssp HHHHHHHCTTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTT-BCCCTTSBHHHHHH
T ss_pred HHHHHHHCCCeEEEEEEecCCCCCccccCCEEEcCCCCEeeeehhhhHhhcCCCccccEEEEECC-ccCCccchHHHHHH
Confidence 5679999999999999986 57999999999999999999999999999999999999999998 58999999999999
Q ss_pred hcCC-CCEEEEEEccccccC
Q psy7717 95 SFAT-NGSLVLNYCKTQAWG 113 (113)
Q Consensus 95 ~~kd-DGfLyi~Ys~~~afG 113 (113)
+|+| ||||||+||+++|||
T Consensus 105 ~~kdeDGfLY~~Ys~e~tfG 124 (125)
T 3m95_A 105 EHHDEDFFLYIAFSDENVYG 124 (125)
T ss_dssp HHCCTTSCEEEEEESSSCC-
T ss_pred HcCCCCCeEEEEecCccccC
Confidence 9998 999999999999999
No 4
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=100.00 E-value=1.4e-38 Score=213.69 Aligned_cols=88 Identities=55% Similarity=1.012 Sum_probs=87.0
Q ss_pred CeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCCCCEEEEE
Q psy7717 26 VKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVLN 105 (113)
Q Consensus 26 ~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kdDGfLyi~ 105 (113)
.||.|+++++|++|.|+++||+||+++||++|+.+|||||+++++++|||||||+|+|++|++||+||++|++||||||+
T Consensus 4 ~Kv~v~fk~~g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k~DGfLyv~ 83 (91)
T 4gdk_A 4 KKIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLH 83 (91)
T ss_dssp CEEEEEEEECSSSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHCBTTEEEEE
T ss_pred ceEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHhCCCCEEEEE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccccccC
Q psy7717 106 YCKTQAWG 113 (113)
Q Consensus 106 Ys~~~afG 113 (113)
||+++|||
T Consensus 84 Ys~~~afG 91 (91)
T 4gdk_A 84 YCKSQAWG 91 (91)
T ss_dssp EESSCCCC
T ss_pred EeCccccC
Confidence 99999999
No 5
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=100.00 E-value=5.5e-39 Score=223.99 Aligned_cols=96 Identities=25% Similarity=0.500 Sum_probs=92.2
Q ss_pred CccccccCCCeeEEEEEec--CCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHH
Q psy7717 17 SPSIGAEAKVKVPILLRAT--GDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYD 94 (113)
Q Consensus 17 ~~~i~~k~p~kVpVi~e~~--~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~ 94 (113)
+..||++||+|||||||+. +++|.|+++||+||.++||++|+.+||++|+++++++||||||+. +|++|++|++||+
T Consensus 18 ~~~ir~kyP~~IPVIve~~~~s~~p~l~k~KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~-~p~~~~~m~~LY~ 96 (117)
T 1eo6_A 18 SAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKT-VPQSSLTMGQLYE 96 (117)
T ss_dssp HHHHHHHCTTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTB-CCCTTSBHHHHHH
T ss_pred HHHHHHHCCCeEEEEEEecCCCCCCcccceEEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCE-ecCccchHHHHHH
Confidence 5678999999999999987 469999999999999999999999999999999999999999997 6999999999999
Q ss_pred hcCC-CCEEEEEEccccccC
Q psy7717 95 SFAT-NGSLVLNYCKTQAWG 113 (113)
Q Consensus 95 ~~kd-DGfLyi~Ys~~~afG 113 (113)
+|+| ||||||+||+++|||
T Consensus 97 ~~kd~DGfLyi~Ys~~~~fG 116 (117)
T 1eo6_A 97 KEKDEDGFLYVAYSGENTFG 116 (117)
T ss_dssp HHCCTTSCEEEEEECCCCCC
T ss_pred HhCCCCCEEEEEEeCCccCC
Confidence 9999 999999999999999
No 6
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=100.00 E-value=3.3e-39 Score=228.94 Aligned_cols=96 Identities=23% Similarity=0.472 Sum_probs=92.1
Q ss_pred CccccccCCCeeEEEEEec--CC-CCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEE-EEcCccCCCccchHHHH
Q psy7717 17 SPSIGAEAKVKVPILLRAT--GD-APILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFI-YVNQSFAPSPDTTIRAL 92 (113)
Q Consensus 17 ~~~i~~k~p~kVpVi~e~~--~~-~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFl-yVnn~~~P~~d~t~~~L 92 (113)
+..||++||+|||||||+. ++ +|.|+|+||+||.++||++|+.+||++|+++++++||| |||++ +|++|++||+|
T Consensus 25 ~~~ir~kyP~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~-~p~~~~~m~~l 103 (130)
T 2zjd_A 25 VRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHS-MVSVSTPISEV 103 (130)
T ss_dssp HHHHHHHCTTEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTE-ECCTTSBHHHH
T ss_pred HHHHHHhCCCceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCc-cCCccchHHHH
Confidence 5679999999999999987 45 99999999999999999999999999999999999999 99998 69999999999
Q ss_pred HHhcCC-CCEEEEEEccccccC
Q psy7717 93 YDSFAT-NGSLVLNYCKTQAWG 113 (113)
Q Consensus 93 Y~~~kd-DGfLyi~Ys~~~afG 113 (113)
|++|+| ||||||+||+++|||
T Consensus 104 Y~~~kdeDGfLyv~Ys~e~tfG 125 (130)
T 2zjd_A 104 YESEKDEDGFLYMVYASQETFG 125 (130)
T ss_dssp HHHHCCTTSCEEEEEEEHHHHH
T ss_pred HHHhCCCCCEEEEEEeCCcccC
Confidence 999999 999999999999998
No 7
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.6e-37 Score=208.63 Aligned_cols=87 Identities=33% Similarity=0.622 Sum_probs=74.6
Q ss_pred CCCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCCCCEEE
Q psy7717 24 AKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLV 103 (113)
Q Consensus 24 ~p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kdDGfLy 103 (113)
.++||.|+++++|++|+|+++||+||+++||++|+.+|||||++ ++|||||||+|+|++|++||+||++|++|||||
T Consensus 5 ~~~Kv~vrfk~~g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l---~alFlyVNn~f~Ps~d~~~~~Ly~~fk~dg~Ly 81 (91)
T 3w1s_C 5 NIQKIQIKFQPIGSIGQLKPSVCKISMSQSFAMVILFLKRRLKM---DHVYCYINNSFAPSPQQNIGELWMQFKTNDELI 81 (91)
T ss_dssp -CCEEEEEEEECCC-------EEEEETTSBHHHHHHHHHHHHTC---SCCEEEETTTBCCCTTSBHHHHHHHHCBTTEEE
T ss_pred CCCeEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHhhCC---ceEEEEECCccCCCcccHHHHHHHHhCCCCEEE
Confidence 46899999999999999999999999999999999999999999 699999999999999999999999999999999
Q ss_pred EEEccccccC
Q psy7717 104 LNYCKTQAWG 113 (113)
Q Consensus 104 i~Ys~~~afG 113 (113)
|+||.++|||
T Consensus 82 v~Ys~~~afG 91 (91)
T 3w1s_C 82 VSYCASVAFG 91 (91)
T ss_dssp EEEEC---CC
T ss_pred EEEeCccccC
Confidence 9999999999
No 8
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=100.00 E-value=2.1e-37 Score=209.75 Aligned_cols=87 Identities=43% Similarity=0.820 Sum_probs=83.1
Q ss_pred CCCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCCCCEEE
Q psy7717 24 AKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLV 103 (113)
Q Consensus 24 ~p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kdDGfLy 103 (113)
.|+||+|++++++++|.|+++||+|++++||++|+.+|||||+++ +|||||||+|+|++|++|++||++|+||||||
T Consensus 10 ~~~KV~V~~~~~~~~P~l~k~KflV~~~~t~~~~~~~lRkrL~l~---alFlyvn~~~~Ps~d~~m~~LY~~~kdDGfLy 86 (96)
T 1wz3_A 10 SVQKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLHSD---SLFVYVNSAFSPNPDESVIDLYNNFGFDGKLV 86 (96)
T ss_dssp --CEEEEEEEECTTCCCCSCCEEEEETTSBTHHHHHHHHHHHTCS---SCEEEEEEEECCCTTSBHHHHHHHHCBTTBEE
T ss_pred CCCeEEEEEEECCCCCcccccEEEeCCCCcHHHHHHHHHHhcCCc---eEEEEECCcccCChhhHHHHHHHHhCCCCEEE
Confidence 378999999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred EEEccccccC
Q psy7717 104 LNYCKTQAWG 113 (113)
Q Consensus 104 i~Ys~~~afG 113 (113)
|+||+++|||
T Consensus 87 i~Ys~~~afG 96 (96)
T 1wz3_A 87 VNYACSMAWG 96 (96)
T ss_dssp EEEESCSCC-
T ss_pred EEEeCCcccC
Confidence 9999999999
No 9
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=100.00 E-value=1.1e-35 Score=205.18 Aligned_cols=91 Identities=26% Similarity=0.490 Sum_probs=86.8
Q ss_pred CccccccCCCeeEEEEEecC--CCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHH
Q psy7717 17 SPSIGAEAKVKVPILLRATG--DAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYD 94 (113)
Q Consensus 17 ~~~i~~k~p~kVpVi~e~~~--~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~ 94 (113)
+..||++||+|||||||+.+ ++|.|+++||+||.++||++|+.+||++|+++++++|||||||. +|++|++|++||+
T Consensus 17 ~~~ir~k~p~~IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~-~p~~~~~m~~LY~ 95 (110)
T 2r2q_A 17 GEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNT-IPPTSATMGQLYE 95 (110)
T ss_dssp HHHHHHHCTTEEEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTB-CCCTTSBHHHHHH
T ss_pred HHHHHHhCCCceEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCE-ecCccChHHHHHH
Confidence 56789999999999999974 79999999999999999999999999999999999999999997 6999999999999
Q ss_pred hcCC-CCEEEEEEcc
Q psy7717 95 SFAT-NGSLVLNYCK 108 (113)
Q Consensus 95 ~~kd-DGfLyi~Ys~ 108 (113)
+|+| ||||||+||+
T Consensus 96 ~~kd~DGfLyi~Ys~ 110 (110)
T 2r2q_A 96 DNHEEDYFLYVAYSD 110 (110)
T ss_dssp HHCCTTSCEEEEEEC
T ss_pred HcCCCCCEEEEEEeC
Confidence 9999 9999999985
No 10
>3vqi_A ATG5; autophagy, E3-like, ubiquitin-fold, PRE-autoph structure, protein turnover, protein transport; HET: EPE; 2.50A {Kluyveromyces marxianus}
Probab=94.97 E-value=0.012 Score=45.67 Aligned_cols=73 Identities=21% Similarity=0.258 Sum_probs=46.6
Q ss_pred CCCeeEEEEEecCCCCCcccceEEec---CCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCC-C
Q psy7717 24 AKVKVPILLRATGDAPILTKKKWLVH---VDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFAT-N 99 (113)
Q Consensus 24 ~p~kVpVi~e~~~~~P~L~k~KflV~---~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kd-D 99 (113)
....|||++--.+. |.++. +|+ ...|+++++. ..+.- ......+++++. .+++++.|.+||+++.- |
T Consensus 196 ~~r~IPiRIy~~~~-~~iQ~---~i~~~~~~~TLg~~L~---~~lp~-l~~~~~~iihGi-~vp~~~pl~~l~~~~~y~D 266 (274)
T 3vqi_A 196 KAKSLPVRVWTSNY-AVLQP---TVPVTDKELSVAELLD---SIKLS-SDGVKSVIIQGI-DVSIEDNIFELYDIFASID 266 (274)
T ss_dssp GCSBCCEEEECTTS-CEECC---CCBCC---CBHHHHHH---TTTCC-C--CCEEEETTE-EEETTSBHHHHHHHHCCTT
T ss_pred cccceeEEEEcCCC-CeEec---ccCCCCccccHHHHHH---Hhccc-cccceEEEEeCc-cCCCCCcHHHHHHHccCCC
Confidence 46789999985432 32221 233 3567766655 33321 112344778884 57889999999999999 9
Q ss_pred CEEEEE
Q psy7717 100 GSLVLN 105 (113)
Q Consensus 100 GfLyi~ 105 (113)
|||||.
T Consensus 267 gFLhiv 272 (274)
T 3vqi_A 267 GFLYLV 272 (274)
T ss_dssp SCEEEE
T ss_pred ceEEEE
Confidence 999985
No 11
>2dyo_A Autophagy protein 5; ubiquitin-fold, herix-bundle, protein turnover/protein turnover complex; 1.97A {Saccharomyces cerevisiae} PDB: 2dym_A
Probab=94.77 E-value=0.015 Score=45.55 Aligned_cols=81 Identities=9% Similarity=0.163 Sum_probs=48.0
Q ss_pred CCeeEEEEEecCCCCCcccceEEecC---CccHHhHHHHHHhhhC-CCCCCeEEEEEcCccCCCccchHHHHHHhcCC-C
Q psy7717 25 KVKVPILLRATGDAPILTKKKWLVHV---DQNVASIISFTKKSIK-MDPSESLFIYVNQSFAPSPDTTIRALYDSFAT-N 99 (113)
Q Consensus 25 p~kVpVi~e~~~~~P~L~k~KflV~~---~~tv~~~~~~lrk~L~-l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kd-D 99 (113)
+.+|||++--.+..+.++--.=.++. ..|+++++.- +..+. +-+..+..+++++. .+++++.+.+||++++- |
T Consensus 200 ~r~IPvRIy~~~~~~~~~~iqp~~~~~~~~~TLgd~L~~-~~~lp~lf~~~~~~viihGI-~vpl~~pl~wl~~~l~~pD 277 (297)
T 2dyo_A 200 PRHIPLIIQTSRTSGTFRISQPTISMTGVNPTLKDIEGD-ILDVKEGINGNDVMVICQGI-EIPWHMLLYDLYSKLRSFD 277 (297)
T ss_dssp CSBCCEEEECCSSSSSCCEECCCCBCTTCCCBTGGGHHH-HSCTTTC----CEEEEETTE-EECTTCBHHHHHHHHCCTT
T ss_pred cceeeEEEEecCCCCceeeeecccCCCCCCcCHHHHHhh-hhhccccCCCCCCeEEEeCc-cCCCCCcHHHHHHHhcCCC
Confidence 68999999854332222100011111 1266665410 22222 22334468889985 57799999999999999 9
Q ss_pred CEEEEEEc
Q psy7717 100 GSLVLNYC 107 (113)
Q Consensus 100 GfLyi~Ys 107 (113)
|||||.-.
T Consensus 278 gFLhIvv~ 285 (297)
T 2dyo_A 278 GFLYITLV 285 (297)
T ss_dssp SCEEEEEE
T ss_pred cEEEEEEE
Confidence 99999765
No 12
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=93.84 E-value=0.67 Score=30.95 Aligned_cols=65 Identities=12% Similarity=0.151 Sum_probs=50.9
Q ss_pred ccCCCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHH
Q psy7717 22 AEAKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRAL 92 (113)
Q Consensus 22 ~k~p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~L 92 (113)
+..+++|.|.|....+- ...|.|.++.+++.++...+++.++++++--|+|=+..+ .+++|.++|
T Consensus 21 ~~~~~~I~IkVk~~~g~----~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L--~~~~Tp~dl 85 (110)
T 2k8h_A 21 KEETALVAVKVVNADGA----EMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPI--DETKTPEEL 85 (110)
T ss_dssp CCCCCCEEEEEEETTSC----CEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBC--CSSSHHHHH
T ss_pred CCCCCeEEEEEECCCCC----EEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEc--CCCCCHHHc
Confidence 44567899999864332 347999999999999999999999998876777755543 457899888
No 13
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=92.90 E-value=0.1 Score=33.70 Aligned_cols=48 Identities=15% Similarity=0.245 Sum_probs=39.3
Q ss_pred cceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHH
Q psy7717 43 KKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRA 91 (113)
Q Consensus 43 k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~ 91 (113)
.-+|.|+.+.+|++++..-|++-+++++.++.|..++.- -.+++++.+
T Consensus 21 dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdR-Ldp~~tp~D 68 (82)
T 3goe_A 21 DLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEW-LDPNDQVQS 68 (82)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEE-CCTTSBGGG
T ss_pred CeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcc-cCccCChhh
Confidence 457999999999999999999999999999999988864 333444443
No 14
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=91.86 E-value=0.89 Score=28.12 Aligned_cols=63 Identities=8% Similarity=0.106 Sum_probs=47.1
Q ss_pred CCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHH
Q psy7717 25 KVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRAL 92 (113)
Q Consensus 25 p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~L 92 (113)
+++|.|.|....+- ....|.|.++.+++.++...+++.++++++--|+|=+.. ..+++|.++|
T Consensus 5 ~~~i~ikV~~~~g~---~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~--l~~~~Tp~~l 67 (79)
T 3a4r_A 5 SQELRLRVQGKEKH---QMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTK--LSGKELPADL 67 (79)
T ss_dssp CCCEEEEEECSSTT---CEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEE--CCSCCCHHHH
T ss_pred CCEEEEEEEeCCCC---EEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEE--cCCCCCHHHc
Confidence 46788888753221 135789999999999999999999999887666664444 3557888887
No 15
>4gdk_B Autophagy protein 5; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_B
Probab=91.27 E-value=0.3 Score=37.67 Aligned_cols=82 Identities=12% Similarity=0.152 Sum_probs=48.9
Q ss_pred CeeEEEEEec-CCCCCcccceEEe---cCCccHHhHHHHHHhhh-CCC-CCCeEEEEEcCccCCCccchHHHHHHhcCC-
Q psy7717 26 VKVPILLRAT-GDAPILTKKKWLV---HVDQNVASIISFTKKSI-KMD-PSESLFIYVNQSFAPSPDTTIRALYDSFAT- 98 (113)
Q Consensus 26 ~kVpVi~e~~-~~~P~L~k~KflV---~~~~tv~~~~~~lrk~L-~l~-~~~sLFlyVnn~~~P~~d~t~~~LY~~~kd- 98 (113)
.+|||++--. .+-|.++.-.=-+ ....|+++++..+=-.+ .-+ ......+++++ +.+++++.+.+||++++-
T Consensus 183 r~IPvRiY~~~~~~~~iQ~~v~p~~~~g~~~TLg~~L~~~lP~lf~~~~~~~~~~viihG-I~~pl~~pl~~l~~~l~y~ 261 (275)
T 4gdk_B 183 RYIPFRIYQTTTERPFIQKLFRPVAADGQLHTLGDLLKEVCPSAIDPEDGEKKNQVMIHG-IEPMLETPLQWLSEHLSYP 261 (275)
T ss_dssp SSCCEEEECTTSSSSEECCCCCSBCTTSCBCBHHHHHHHHCGGGCC------CEEEEBTT-BCCCTTSBHHHHHHHSCCT
T ss_pred ccceEEEEecCCCCCccccCcCCcCCCCCcccHHHHHHHhcccccCCCcccccceEEEeC-CcCCCCCCHHHHHHhccCC
Confidence 6799999843 2333333210001 12347777765532111 101 11345667777 458899999999999999
Q ss_pred CCEEEEEEcc
Q psy7717 99 NGSLVLNYCK 108 (113)
Q Consensus 99 DGfLyi~Ys~ 108 (113)
||||||.-+.
T Consensus 262 DgFLhI~v~~ 271 (275)
T 4gdk_B 262 DNFLHISIIP 271 (275)
T ss_dssp TSCEEEEEEE
T ss_pred CceEEEEEEe
Confidence 9999997653
No 16
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=90.13 E-value=1.8 Score=28.24 Aligned_cols=67 Identities=9% Similarity=0.150 Sum_probs=49.6
Q ss_pred cccCCCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHH
Q psy7717 21 GAEAKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRAL 92 (113)
Q Consensus 21 ~~k~p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~L 92 (113)
..+.+++|.|.|....+- ....|.|.++.++..++..-+++.+++.+.--|+| ++.- ..+++|.++|
T Consensus 19 ~~~~~~~I~LkV~~~dg~---~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~F-DG~r-I~~~~TP~dL 85 (97)
T 2jxx_A 19 STETSQQLQLRVQGKEKH---QTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFF-DGTK-LSGRELPADL 85 (97)
T ss_dssp -CCSCSEEEEEEEESSSS---CEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEE-TTEE-CCSCSCHHHH
T ss_pred CCCCCCeEEEEEEcCCCC---EEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE-CCEE-cCCCCCHHHc
Confidence 345678899988764321 24569999999999999999999999988655665 5432 4557888887
No 17
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=89.48 E-value=0.62 Score=29.90 Aligned_cols=62 Identities=6% Similarity=0.100 Sum_probs=45.4
Q ss_pred CCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHH
Q psy7717 25 KVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRAL 92 (113)
Q Consensus 25 p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~L 92 (113)
+++|.|.|....+ +.-.|.|.++.+++.++...+++.++++++--|+|=+..+ .+++|.++|
T Consensus 3 ~~~i~ikVk~~~g----~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l--~~~~Tp~dl 64 (91)
T 2io0_B 3 NDHINLKVAGQDG----SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI--NETDTPAQL 64 (91)
T ss_dssp -CEEEEEEECTTS----CEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEEC--CTTCCTTTT
T ss_pred CCeEEEEEECCCC----CEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEc--CCCCCHHHc
Confidence 4678888875322 3457999999999999999999999998766666644443 446677665
No 18
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=89.16 E-value=1.3 Score=28.13 Aligned_cols=77 Identities=5% Similarity=0.072 Sum_probs=52.3
Q ss_pred cCCCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCCCCEE
Q psy7717 23 EAKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSL 102 (113)
Q Consensus 23 k~p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kdDGfL 102 (113)
..+..+.|.|+...+ +...+.|..+.||+.+...+..+.++++++--++| ++..+ ..+.|++++ .-+++..|
T Consensus 17 ~~~~~m~I~Vk~~~g----~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif-~Gk~L-~d~~tl~dy--~i~~g~~I 88 (97)
T 1wyw_B 17 KEGEYIKLKVIGQDS----SEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-EGQRI-ADNHTPKEL--GMEEEDVI 88 (97)
T ss_dssp --CCEEEEEEECTTC----CEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTEEC-CTTCCHHHH--TCCTTCEE
T ss_pred CCCCcEEEEEEeCCC----CEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE-CCeEc-CCCCCHHHC--CCCCCCEE
Confidence 355678888875432 23457899999999999999999999887555444 55543 456788764 12235577
Q ss_pred EEEEc
Q psy7717 103 VLNYC 107 (113)
Q Consensus 103 yi~Ys 107 (113)
++...
T Consensus 89 ~l~~~ 93 (97)
T 1wyw_B 89 EVYQE 93 (97)
T ss_dssp EEEES
T ss_pred EEEEe
Confidence 77654
No 19
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=87.47 E-value=1.9 Score=28.28 Aligned_cols=63 Identities=6% Similarity=0.097 Sum_probs=47.4
Q ss_pred CCCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHH
Q psy7717 24 AKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRAL 92 (113)
Q Consensus 24 ~p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~L 92 (113)
.+++|.|.|....+ +...|.|.++.++..++....++.++++++--|+|=+..+ .+++|.++|
T Consensus 21 ~~~~I~IkVk~~~g----~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l--~~~~Tp~dl 83 (104)
T 1wz0_A 21 NNDHINLKVAGQDG----SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI--NETDTPAQL 83 (104)
T ss_dssp CSCCEEEEEECSSS----CEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBC--CTTSCTTTT
T ss_pred CCCeEEEEEECCCC----CEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEc--CCCCCHHHc
Confidence 45788888875322 3457999999999999999999999998866676655543 345676655
No 20
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=86.47 E-value=0.84 Score=29.37 Aligned_cols=62 Identities=6% Similarity=0.100 Sum_probs=45.0
Q ss_pred CCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHH
Q psy7717 25 KVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRAL 92 (113)
Q Consensus 25 p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~L 92 (113)
+++|.|.|+...+ +...|.|.++.+++.++...+++.++++++--|+|=+..+ .+++|.+++
T Consensus 5 ~~~i~ikVk~~~g----~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l--~~~~Tp~dl 66 (94)
T 2io1_B 5 NDHINLKVAGQDG----SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI--NETDTPAQL 66 (94)
T ss_dssp -CEEEEEEECTTS----CEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEEC--CTTCCTTTT
T ss_pred CCeEEEEEECCCC----CEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEc--CCCCCHHHc
Confidence 4678888875322 3457899999999999999999999998765666544443 446677665
No 21
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=85.95 E-value=5.5 Score=26.07 Aligned_cols=74 Identities=8% Similarity=0.077 Sum_probs=52.7
Q ss_pred CCCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCC--CCE
Q psy7717 24 AKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFAT--NGS 101 (113)
Q Consensus 24 ~p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kd--DGf 101 (113)
-..++.|.|+...+ ++..+.|.++.||++|...|..+-++++++- -|..+++.+ ..+.++++ |+. +..
T Consensus 25 ~~~mm~I~VKtl~G----k~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQ-rLi~~Gk~L-~D~~TL~d----ygI~~gst 94 (100)
T 1uh6_A 25 AATMIEVVCNDRLG----KKVRVKCNTDDTIGDLKKLIAAQTGTRWNKI-VLKKWYTIF-KDHVSLGD----YEIHDGMN 94 (100)
T ss_dssp CCCEEEEEEECSSS----SCEEEEEETTSBHHHHHHHHHHHHCCCGGGC-EEEETTEEC-CSSCBHHH----HTCCTTEE
T ss_pred CCCeEEEEEECCCC----CEEEEEeCCCCcHHHHHHHHHHHhCCCHHHE-EEEECCEEC-CCCCCHHH----cCCCCCCE
Confidence 34568888886532 3344789999999999999999999987643 334456654 45668776 343 557
Q ss_pred EEEEEc
Q psy7717 102 LVLNYC 107 (113)
Q Consensus 102 Lyi~Ys 107 (113)
|.|.|.
T Consensus 95 lhL~~~ 100 (100)
T 1uh6_A 95 LELYYQ 100 (100)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 888883
No 22
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=85.62 E-value=1.8 Score=28.62 Aligned_cols=62 Identities=11% Similarity=0.181 Sum_probs=46.7
Q ss_pred CCCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHH
Q psy7717 24 AKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRAL 92 (113)
Q Consensus 24 ~p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~L 92 (113)
.+++|.|.|.. .+ +...|.|.++.++..++...+++.++++++--|+|-+..+ ..++|.++|
T Consensus 28 ~~~~I~IkV~~-~g----~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl--~~~~Tp~dl 89 (106)
T 2eke_C 28 PETHINLKVSD-GS----SEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRI--QADQTPEDL 89 (106)
T ss_dssp CCSEEEEEEEC-SS----CEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEEC--CTTCCTTTT
T ss_pred CCCeEEEEEec-CC----cEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEc--CCCCCHHHc
Confidence 45788888875 32 4567999999999999999999999998766666644433 346677665
No 23
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=85.26 E-value=1.2 Score=28.38 Aligned_cols=63 Identities=6% Similarity=0.097 Sum_probs=45.2
Q ss_pred CCCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHH
Q psy7717 24 AKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRAL 92 (113)
Q Consensus 24 ~p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~L 92 (113)
.+++|.|.|....+ +...|.|.++.+++.++...+++.++++++--|+|=+..+ .+++|.++|
T Consensus 14 ~~~~i~ikV~~~~g----~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l--~~~~Tp~dl 76 (93)
T 2d07_B 14 NNDHINLKVAGQDG----SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI--NETDTPAQL 76 (93)
T ss_dssp -CCEEEEEEECTTS----CEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEEC--CTTCCTTTT
T ss_pred CCCeEEEEEECCCC----CEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEc--CCCCCHHHc
Confidence 35788888875322 2347999999999999999999999988755555544433 345666654
No 24
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=84.37 E-value=3.8 Score=24.35 Aligned_cols=73 Identities=5% Similarity=0.084 Sum_probs=48.2
Q ss_pred eeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCCCCEEEEEE
Q psy7717 27 KVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVLNY 106 (113)
Q Consensus 27 kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kdDGfLyi~Y 106 (113)
++.|.|+...+ +...+.|..+.|++++...+..+.++++++--++| ++..+ ..+.|++++ .-+++..|++..
T Consensus 3 ~m~i~vk~~~g----~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~-~G~~L-~d~~tl~~~--~i~~~~~i~l~~ 74 (79)
T 2uyz_B 3 YIKLKVIGQDS----SEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-EGQRI-ADNHTPKEL--GMEEEDVIEVYQ 74 (79)
T ss_dssp EEEEEEECTTC----CEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTEEC-CTTCCHHHH--TCCTTEEEEEEE
T ss_pred eEEEEEECCCC----CEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE-CCEEe-CCCCCHHHc--CCCCCCEEEEEE
Confidence 45666664322 23457899999999999999999999887555544 55543 456787764 122345666654
Q ss_pred c
Q psy7717 107 C 107 (113)
Q Consensus 107 s 107 (113)
.
T Consensus 75 ~ 75 (79)
T 2uyz_B 75 E 75 (79)
T ss_dssp C
T ss_pred e
Confidence 3
No 25
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=82.87 E-value=0.87 Score=27.53 Aligned_cols=48 Identities=8% Similarity=0.095 Sum_probs=37.6
Q ss_pred cceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHH
Q psy7717 43 KKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRAL 92 (113)
Q Consensus 43 k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~L 92 (113)
.-.|.|.++.+++.++....++.++++++--|+|=+..+ .+++|.+++
T Consensus 13 ~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l--~~~~Tp~~l 60 (72)
T 1wm3_A 13 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI--NETDTPAQL 60 (72)
T ss_dssp EEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEEC--CTTCCTTTT
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEc--CCCCCHHHc
Confidence 457999999999999999999999998777777755543 345666654
No 26
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=82.14 E-value=7.7 Score=24.77 Aligned_cols=73 Identities=8% Similarity=0.093 Sum_probs=48.9
Q ss_pred CeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCC--CCEEE
Q psy7717 26 VKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFAT--NGSLV 103 (113)
Q Consensus 26 ~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kd--DGfLy 103 (113)
..+.|.|+..++ +...+.|+.+.||++|...|..+.++.+++--.+ .+++.+ ..+.++++ |+. +..|+
T Consensus 22 ~~m~I~Vk~~~g----~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~Gk~L-~D~~tL~~----ygI~~g~ti~ 91 (106)
T 1ttn_A 22 YECQLRLRLSTG----KDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWF-FSGRPL-TDKMKFEE----LKIPKDYVVQ 91 (106)
T ss_dssp CSEEEEEEETTT----EEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEE-ETTEEC-CTTSHHHH----CCCSSSCEEE
T ss_pred CeEEEEEEcCCC----CEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEE-ECCEEC-CCCCcHHH----cCCCCCCEEE
Confidence 457777776432 2334779999999999999999999887644333 466554 44556654 454 66777
Q ss_pred EEEcc
Q psy7717 104 LNYCK 108 (113)
Q Consensus 104 i~Ys~ 108 (113)
|....
T Consensus 92 lv~~~ 96 (106)
T 1ttn_A 92 VIVSQ 96 (106)
T ss_dssp EECCC
T ss_pred EEEeC
Confidence 76543
No 27
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=80.21 E-value=9.7 Score=24.69 Aligned_cols=80 Identities=11% Similarity=0.157 Sum_probs=52.1
Q ss_pred CccccccCCCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhc
Q psy7717 17 SPSIGAEAKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSF 96 (113)
Q Consensus 17 ~~~i~~k~p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~ 96 (113)
|.-+....|.+|.|.|+...+ ++..+.|.++.||++|-+.|..+.++++++-.-.| +++. -..+.|++ .|
T Consensus 11 ~~~~~~~~~~mIqI~Vk~~~G----kk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif-~Gk~-LkD~~TL~----dY 80 (93)
T 3plu_A 11 SSGLVPRGSHMIEVVVNDRLG----KKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQK-GGSV-LKDHISLE----DY 80 (93)
T ss_dssp ---------CEEEEEEECTTS----CEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEE-TTEE-CCTTSBTG----GG
T ss_pred cccccCCCCceEEEEEECCCC----CEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEe-CCEE-ccCcCCHH----Hc
Confidence 334556788999999985321 45668899999999999999999999987655455 5554 34455663 56
Q ss_pred CC--CCEEEEEE
Q psy7717 97 AT--NGSLVLNY 106 (113)
Q Consensus 97 kd--DGfLyi~Y 106 (113)
+. +.-|.|.|
T Consensus 81 ~I~dgstLhL~~ 92 (93)
T 3plu_A 81 EVHDQTNLELYY 92 (93)
T ss_dssp TCCTTCEEEEEE
T ss_pred CCCCCCEEEEEe
Confidence 75 44777776
No 28
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=80.05 E-value=7.2 Score=23.11 Aligned_cols=73 Identities=8% Similarity=0.107 Sum_probs=47.1
Q ss_pred eeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCCCCEEEEEE
Q psy7717 27 KVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVLNY 106 (113)
Q Consensus 27 kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kdDGfLyi~Y 106 (113)
++.|.|+...+ +...+.|+.+.||++|...|.++.++++++- -|+.+++.+ ..+.++++. .-+++..|++..
T Consensus 3 ~m~i~vk~~~g----~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q-rL~~~g~~L-~d~~tL~~~--~i~~~~~l~l~~ 74 (85)
T 3mtn_B 3 HMQIFVKTLTG----KTITLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQL-EDGRTLSDY--NIQKWSTLFLLL 74 (85)
T ss_dssp CEEEEEECTTS----CEEEEEECTTCBHHHHHHHHHHHHCCCGGGC-EEEETTEEC-CTTSBTGGG--TCCTTCEEEEEC
T ss_pred eEEEEEEcCCC----CEEEEEECCCCCHHHHHHHHHHHHCcChHHE-EEEECCEEC-CCCCCHHHc--CCCCCCEEEEEE
Confidence 45566654322 2335679999999999999999999987643 344577654 346666653 112366777754
Q ss_pred c
Q psy7717 107 C 107 (113)
Q Consensus 107 s 107 (113)
.
T Consensus 75 r 75 (85)
T 3mtn_B 75 R 75 (85)
T ss_dssp C
T ss_pred E
Confidence 3
No 29
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=79.02 E-value=2.6 Score=28.41 Aligned_cols=63 Identities=8% Similarity=0.119 Sum_probs=45.6
Q ss_pred CCCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHH
Q psy7717 24 AKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRAL 92 (113)
Q Consensus 24 ~p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~L 92 (113)
..++|.|.|....+. ...|.|.++.++..++....++.+++.++--|+|=+..+ ..++|.++|
T Consensus 37 ~~~~I~LKV~~qdg~----ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI--~~~~TP~dL 99 (115)
T 3kyd_D 37 EGEYIKLKVIGQDSS----EIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRI--ADNHTPKEL 99 (115)
T ss_dssp --CEEEEEEECTTSC----EEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEEC--CTTCCTTTT
T ss_pred CCCeEEEEEEcCCCC----EEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeEC--CCCCCHHHc
Confidence 357888888754322 247999999999999999999999998877777644443 335666554
No 30
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=76.15 E-value=9.9 Score=24.42 Aligned_cols=54 Identities=4% Similarity=0.076 Sum_probs=40.4
Q ss_pred ceEEecCCccHHhHHHHHHhhhCCCCCCeEEEE-EcC---ccCCCccchHHHHHHhcC
Q psy7717 44 KKWLVHVDQNVASIISFTKKSIKMDPSESLFIY-VNQ---SFAPSPDTTIRALYDSFA 97 (113)
Q Consensus 44 ~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFly-Vnn---~~~P~~d~t~~~LY~~~k 97 (113)
..+.|+.+.++.++..-||.++++..++.+-+. ++. -..-+.|+-+.+-.+.|.
T Consensus 18 ~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~itisSd~EL~eAl~l~~ 75 (89)
T 1vd2_A 18 MITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYE 75 (89)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEECCSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCcccccCHHHHHHHHHHHH
Confidence 467789999999999999999999877777664 543 345577777766555444
No 31
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=75.98 E-value=12 Score=23.62 Aligned_cols=78 Identities=9% Similarity=0.135 Sum_probs=53.5
Q ss_pred ccCCCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCCCCE
Q psy7717 22 AEAKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGS 101 (113)
Q Consensus 22 ~k~p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kdDGf 101 (113)
+.-+..+.|.|+..++ +..+-|+.+.||++|...|.++.++++++ .-|+.+++.+ ..+.++++. .-+++..
T Consensus 17 ~~~~~~m~I~Vk~~~g-----~~~l~v~~~~TV~~LK~~I~~~~gip~~~-QrLi~~Gk~L-~D~~tL~~y--gI~~gst 87 (100)
T 1yqb_A 17 RGSPHLIKVTVKTPKD-----KEDFSVTDTCTIQQLKEEISQRFKAHPDQ-LVLIFAGKIL-KDPDSLAQC--GVRDGLT 87 (100)
T ss_dssp SCCTTEEEEEEECSSC-----EEEEEEETTCBHHHHHHHHHHHHTCCGGG-EEEEETTEEC-CTTSBHHHH--TCCTTCE
T ss_pred CCCCCeEEEEEEcCCC-----cEEEEECCCCcHHHHHHHHHHHHCcChhh-EEEEECCEEC-CCcCcHHHC--CCCCCCE
Confidence 4456778888876543 13578999999999999999999998754 4444566654 456677764 1223557
Q ss_pred EEEEEcc
Q psy7717 102 LVLNYCK 108 (113)
Q Consensus 102 Lyi~Ys~ 108 (113)
|++....
T Consensus 88 I~l~~r~ 94 (100)
T 1yqb_A 88 VHLVIKR 94 (100)
T ss_dssp EEEEECC
T ss_pred EEEEEcC
Confidence 7776543
No 32
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=75.93 E-value=7.4 Score=22.41 Aligned_cols=57 Identities=9% Similarity=0.106 Sum_probs=40.3
Q ss_pred eEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCC--CCEEEEEEc
Q psy7717 45 KWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFAT--NGSLVLNYC 107 (113)
Q Consensus 45 KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kd--DGfLyi~Ys 107 (113)
.+.|+.+.|++++...|.++.+++++. .-|+.+++.+ ..+.++++ |+. +..|++...
T Consensus 14 ~i~v~~~~tv~~lK~~i~~~~~i~~~~-q~L~~~g~~L-~d~~tL~~----~~i~~g~~i~l~~~ 72 (76)
T 3a9j_A 14 TLEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQL-EDGRTLSD----YNIQRESTLHLVLR 72 (76)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGG-EEEEETTEEC-CTTCBTGG----GTCCTTCEEEEEEC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHH-eEEEECCeEC-CCCCcHHH----cCCCCCCEEEEEEe
Confidence 567899999999999999999998754 4455577654 33556654 343 557777653
No 33
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=75.91 E-value=8.2 Score=22.19 Aligned_cols=57 Identities=11% Similarity=0.095 Sum_probs=40.6
Q ss_pred eEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCC--CCEEEEEEc
Q psy7717 45 KWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFAT--NGSLVLNYC 107 (113)
Q Consensus 45 KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kd--DGfLyi~Ys 107 (113)
.+.|+.+.|++++...|.++.++++++ .-|+.+++.+ ..+.++++ |+. +..|++...
T Consensus 14 ~~~v~~~~tv~~lK~~i~~~~~i~~~~-q~L~~~g~~L-~d~~tL~~----~~i~~g~~i~l~~~ 72 (76)
T 1ndd_A 14 EIDIEPTDKVERIKERVEEKEGIPPQQ-QRLIYSGKQM-NDEKTAAD----YKILGGSVLHLVLA 72 (76)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGG-EEEEETTEEC-CTTSBGGG----GTCCTTCEEEEEEC
T ss_pred EEEECCCChHHHHHHHHHHHHCcChHH-EEEEECCEEC-CCCCcHHH----cCCCCCCEEEEEEe
Confidence 567899999999999999999998754 4455577654 34556654 444 557777654
No 34
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=74.80 E-value=5.6 Score=25.37 Aligned_cols=59 Identities=8% Similarity=0.195 Sum_probs=43.1
Q ss_pred EEecCCccHHhHHHHHHhhhCCCCCCeEEEEEc---CccCCCccchHHHHHHhcCCCCEEEEE
Q psy7717 46 WLVHVDQNVASIISFTKKSIKMDPSESLFIYVN---QSFAPSPDTTIRALYDSFATNGSLVLN 105 (113)
Q Consensus 46 flV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVn---n~~~P~~d~t~~~LY~~~kdDGfLyi~ 105 (113)
..||.+.+++++..-|++||+++++....-|=. +.+.+..|+.|.+.++.=++. .|-+.
T Consensus 18 irvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~~~vi~~d~dl~~aw~~~~n~-~LtL~ 79 (83)
T 1oey_A 18 MKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELVPLSEDSMKDAWGQVKNY-CLTLW 79 (83)
T ss_dssp EEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCSSCEECCTTTHHHHHTTCBTT-EEEEE
T ss_pred EECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCCCCeeccChHHHHHHHHhccCC-cEEEE
Confidence 358999999999999999999986655555543 233377788899888765543 45443
No 35
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=74.68 E-value=14 Score=23.45 Aligned_cols=74 Identities=9% Similarity=0.132 Sum_probs=50.5
Q ss_pred CCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCCCCEEEE
Q psy7717 25 KVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVL 104 (113)
Q Consensus 25 p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kdDGfLyi 104 (113)
+..+.|.|+..++ +..+.|+.+.||.+|...|..+.++.+++ .-|+.+++.+ ..+.++++. .-+++..|+|
T Consensus 15 ~~~m~I~Vk~~~g-----~~~l~v~~~~TV~~LK~~I~~~~gip~~~-qrLi~~Gk~L-~D~~tL~~~--gi~~g~~i~l 85 (106)
T 1wx7_A 15 PHLIKVTVKTPKD-----KEDFSVTDTCTIQQLKEEISQRFKAHPDQ-LVLIFAGKIL-KDPDSLAQC--GVRDGLTVHL 85 (106)
T ss_dssp SSEEEEEEECSSC-----EEEEEEETTCCHHHHHHHHHHHHTCCTTT-EEEEETTEEC-CTTSCHHHH--TCCTTEEEEE
T ss_pred CceEEEEEEeCCC-----cEEEEECCCCcHHHHHHHHHHHHCcChhh-EEEEECCEEC-CCcCcHHHc--CCCCCCEEEE
Confidence 4678888876543 23578999999999999999999988654 4445567654 456677654 1222446777
Q ss_pred EEc
Q psy7717 105 NYC 107 (113)
Q Consensus 105 ~Ys 107 (113)
...
T Consensus 86 ~~~ 88 (106)
T 1wx7_A 86 VIK 88 (106)
T ss_dssp EEC
T ss_pred EEc
Confidence 654
No 36
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=74.40 E-value=11 Score=22.45 Aligned_cols=73 Identities=10% Similarity=0.056 Sum_probs=47.7
Q ss_pred CeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCCCCEEEEE
Q psy7717 26 VKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVLN 105 (113)
Q Consensus 26 ~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kdDGfLyi~ 105 (113)
..+.|.|+...+ +.-.+.|+.+.||+++...|..+.++++++- -|+.+++.+ ..+.++++. .-+++..|++.
T Consensus 11 ~~m~i~vk~~~g----~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q-rL~~~G~~L-~d~~tL~~~--~i~~~~~i~l~ 82 (88)
T 3dbh_I 11 GSMLIKVKTLTG----KEIEIDIEPTDKVERIKERVEEKEGIPPQQQ-RLIYSGKQM-NDEKTAADY--KILGGSVLHLV 82 (88)
T ss_dssp CCEEEEEECTTS----CEEEEEECTTCBHHHHHHHHHHHHCCCGGGC-CEEETTEEC-CTTSBGGGG--TCCTTCEEEEC
T ss_pred CcEEEEEEcCCC----CEEEEEECCCCCHHHHHHHHHHHHCcCHHHE-EEEECCeEC-CCCCcHHHc--CCCCCCEEEEE
Confidence 346777765432 2235679999999999999999999887543 334466654 346677663 12236677765
Q ss_pred E
Q psy7717 106 Y 106 (113)
Q Consensus 106 Y 106 (113)
.
T Consensus 83 ~ 83 (88)
T 3dbh_I 83 L 83 (88)
T ss_dssp C
T ss_pred E
Confidence 4
No 37
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=72.47 E-value=13 Score=22.24 Aligned_cols=75 Identities=3% Similarity=0.065 Sum_probs=49.9
Q ss_pred CCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCCCCEEEE
Q psy7717 25 KVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVL 104 (113)
Q Consensus 25 p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kdDGfLyi 104 (113)
|..+.|.|+.... +...+.|+.+.||+++...|.++.++++++- -|+.+++.+ ..+.++++. .-+++..|++
T Consensus 5 ~~~m~i~Vk~~~g----~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q-rL~~~Gk~L-~d~~tL~~~--~i~~g~~i~l 76 (87)
T 1wh3_A 5 SSGIQVFVKNPDG----GSYAYAINPNSFILGLKQQIEDQQGLPKKQQ-QLEFQGQVL-QDWLGLGIY--GIQDSDTLIL 76 (87)
T ss_dssp SSSEEEEEEETTT----EEEEEEECSSSBHHHHHHHHHHHTCCCTTTE-EEEETTEEC-CSSSBHHHH--TCCTTEEEEE
T ss_pred CCCEEEEEEcCCC----CEEEEEeCCCChHHHHHHHHHHHhCCChHHE-EEEECCEEc-cCCCCHHHC--CCCCCCEEEE
Confidence 4567788876432 2235679999999999999999999987654 344566654 456677664 1123556777
Q ss_pred EEc
Q psy7717 105 NYC 107 (113)
Q Consensus 105 ~Ys 107 (113)
...
T Consensus 77 ~~~ 79 (87)
T 1wh3_A 77 SKK 79 (87)
T ss_dssp EEC
T ss_pred EEe
Confidence 654
No 38
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=72.43 E-value=7.5 Score=23.09 Aligned_cols=73 Identities=8% Similarity=0.083 Sum_probs=46.3
Q ss_pred eeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCCCCEEEEEE
Q psy7717 27 KVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVLNY 106 (113)
Q Consensus 27 kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kdDGfLyi~Y 106 (113)
++.|.|+...+ +...+.|+.+.||+++...|.++.++++++ .-|+.+++.+ ..+.++++. .-+++..|++..
T Consensus 3 ~m~i~vk~~~g----~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~-qrL~~~g~~L-~d~~tL~~~--~i~~~~~i~l~~ 74 (85)
T 3n3k_B 3 HMRIVVKTLMG----RTIILEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQL-EDGRTLSDY--NIHNHSALYLLL 74 (85)
T ss_dssp -CEEEEECGGG----CEEEEECCTTCBHHHHHHHHHHHHCCCGGG-EEEEETBEEC-CTTCBTTTT--TCCTTCEEEEEE
T ss_pred eEEEEEEeCCC----CEEEEEECCCCcHHHHHHHHHHHHCCCHHH-EEEEECCeEC-CCCCCHHHC--CCCCCCEEEEEE
Confidence 34555654321 123467899999999999999999998764 4455576653 445666653 122366777765
Q ss_pred c
Q psy7717 107 C 107 (113)
Q Consensus 107 s 107 (113)
.
T Consensus 75 r 75 (85)
T 3n3k_B 75 K 75 (85)
T ss_dssp C
T ss_pred e
Confidence 3
No 39
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=71.66 E-value=16 Score=23.04 Aligned_cols=74 Identities=11% Similarity=0.113 Sum_probs=49.6
Q ss_pred cCCCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCC--CC
Q psy7717 23 EAKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFAT--NG 100 (113)
Q Consensus 23 k~p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kd--DG 100 (113)
..+..+.|.|+..+ +...+.|+.+.||++|...|..+.++++++ .-|+.+++.+ ..+.++++ |+. +.
T Consensus 21 ~~~~~m~I~Vk~~g-----~~~~l~v~~~~TV~~LK~~I~~~~gip~~~-qrLi~~Gk~L-~D~~tL~~----~gI~~g~ 89 (101)
T 2klc_A 21 GHPKIMKVTVKTPK-----EKEEFAVPENSSVQQFKEEISKRFKSHTDQ-LVLIFAGKIL-KDQDTLSQ----HGIHDGL 89 (101)
T ss_dssp --CCCEEEEEECSS-----CEEEEEECSCCCHHHHHHHHHHHHTCCGGG-EEEEETTEEE-CTTCCTGG----GTCCTTC
T ss_pred CCCCeEEEEEEeCC-----cEEEEEECCCCCHHHHHHHHHHHHCcChhh-EEEEECCEEC-CCcCcHHH----cCCCCCC
Confidence 34566888887653 234578999999999999999999998764 3444566654 34566654 454 55
Q ss_pred EEEEEEc
Q psy7717 101 SLVLNYC 107 (113)
Q Consensus 101 fLyi~Ys 107 (113)
.|+|...
T Consensus 90 ~I~l~~~ 96 (101)
T 2klc_A 90 TVHLVIK 96 (101)
T ss_dssp EEEEEEC
T ss_pred EEEEEEc
Confidence 6777654
No 40
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=71.37 E-value=2.9 Score=28.53 Aligned_cols=55 Identities=5% Similarity=0.041 Sum_probs=39.6
Q ss_pred ceEEecCCccHHhHHHHHHhhhCCCCC-CeEEEEEcC---cc---CCCccchHHHHHHhcCC
Q psy7717 44 KKWLVHVDQNVASIISFTKKSIKMDPS-ESLFIYVNQ---SF---APSPDTTIRALYDSFAT 98 (113)
Q Consensus 44 ~KflV~~~~tv~~~~~~lrk~L~l~~~-~sLFlyVnn---~~---~P~~d~t~~~LY~~~kd 98 (113)
.-|.|.++.+|++|...+-+.++++++ ..|..+++. .. ++.++.+|+..+..+..
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~d~~~t~~~~~~~~~~ 119 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSD 119 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEECCCCBTTBCCCCCCCTTGGGTSBTHHHHT
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEeecCCCCCCCCCCCCccccHHHHHHHhhc
Confidence 459999999999999999999998866 456666653 12 23345677766666544
No 41
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=70.71 E-value=18 Score=23.25 Aligned_cols=86 Identities=12% Similarity=0.099 Sum_probs=55.9
Q ss_pred ccccccCCCeeEEEEEecCCC--C--Cccc--ceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHH
Q psy7717 18 PSIGAEAKVKVPILLRATGDA--P--ILTK--KKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRA 91 (113)
Q Consensus 18 ~~i~~k~p~kVpVi~e~~~~~--P--~L~k--~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~ 91 (113)
+...+.+|.-|.|.|...... | -|.. ..+-|+.+.||++|-..|..+.++++++-- |+.++..+ ..+.++++
T Consensus 16 ~~~l~~~~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~Qr-L~~~Gk~L-~D~~tL~~ 93 (115)
T 1we7_A 16 EEFLRRNKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQK-LQYEGIFI-KDSNSLAY 93 (115)
T ss_dssp HHHHHHCCSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEE-EEETTEEE-CTTSBHHH
T ss_pred HHHHHhCCCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEE-EEECCEEC-CCCCCHHH
Confidence 345577889999999754321 1 1332 336789999999999999999998876433 33466654 45667765
Q ss_pred HHHhcCCCCEEEEEEc
Q psy7717 92 LYDSFATNGSLVLNYC 107 (113)
Q Consensus 92 LY~~~kdDGfLyi~Ys 107 (113)
. .-+++..|+|...
T Consensus 94 y--~i~~g~~i~lv~r 107 (115)
T 1we7_A 94 Y--NMASGAVIHLALK 107 (115)
T ss_dssp H--TCCSSCEEEEEEC
T ss_pred C--CCCCCCEEEEEEE
Confidence 3 1123557777654
No 42
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=69.46 E-value=17 Score=22.34 Aligned_cols=71 Identities=6% Similarity=0.112 Sum_probs=48.0
Q ss_pred CCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCC--CCEE
Q psy7717 25 KVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFAT--NGSL 102 (113)
Q Consensus 25 p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kd--DGfL 102 (113)
+..+.|.|+..+ +...+.|+.+.||++|...|..+.++++++--.+ .+++.+ ..+.++++ |+. +..|
T Consensus 15 ~~~m~i~Vk~~g-----~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~Gk~L-~D~~tL~~----~gi~~g~~i 83 (96)
T 1wx8_A 15 SRIIRVSVKTPQ-----DCHEFFLAENSNVRRFKKQISKYLHCNADRLVLI-FTGKIL-RDQDILSQ----RGILDGSTV 83 (96)
T ss_dssp SCEEEEEEECSS-----SEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCE-ETTEEC-CTTSCHHH----HTCCTTEEE
T ss_pred CCcEEEEEEECC-----eEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE-ECCEEC-CCcCCHHH----CCCCCCCEE
Confidence 466788887642 2335779999999999999999999887643333 456554 45677776 344 4455
Q ss_pred EEEE
Q psy7717 103 VLNY 106 (113)
Q Consensus 103 yi~Y 106 (113)
++..
T Consensus 84 ~l~~ 87 (96)
T 1wx8_A 84 HVVV 87 (96)
T ss_dssp ECCB
T ss_pred EEEE
Confidence 5543
No 43
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=69.27 E-value=17 Score=22.16 Aligned_cols=74 Identities=11% Similarity=0.099 Sum_probs=49.3
Q ss_pred eeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCCCCEEEEEE
Q psy7717 27 KVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVLNY 106 (113)
Q Consensus 27 kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kdDGfLyi~Y 106 (113)
.+.|.|+...+ +...+-|+.+.||+++...|..+.++++++--.+ .+++.+ ..+.++++. .-+++..|++..
T Consensus 4 ~m~I~Vk~~~g----~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~Gk~L-~D~~tL~~~--~I~~g~~i~l~~ 75 (88)
T 2hj8_A 4 PLSILVRNNKG----RSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT-FEGKPL-EDQLPLGEY--GLKPLSTVFMNL 75 (88)
T ss_dssp EEEEEEEETTS----CEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEE-SSSSCC-CTTSBHHHH--HCSTTCEEEEEE
T ss_pred cEEEEEECCCC----CEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEE-ECCEEC-CCCCcHHHc--CCCCCCEEEEEE
Confidence 46677765432 2234679999999999999999999987754444 455543 456788765 223466788766
Q ss_pred cc
Q psy7717 107 CK 108 (113)
Q Consensus 107 s~ 108 (113)
..
T Consensus 76 ~~ 77 (88)
T 2hj8_A 76 RL 77 (88)
T ss_dssp C-
T ss_pred Ec
Confidence 53
No 44
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=69.15 E-value=16 Score=21.96 Aligned_cols=75 Identities=9% Similarity=0.008 Sum_probs=48.5
Q ss_pred CeeEEEEEecCCCCCcccceE-EecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCCCCEEEE
Q psy7717 26 VKVPILLRATGDAPILTKKKW-LVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVL 104 (113)
Q Consensus 26 ~kVpVi~e~~~~~P~L~k~Kf-lV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kdDGfLyi 104 (113)
..+.|.|+...+- +...+ -|+.+.||+++...|..+.++++++-- |+.+++.+ ..+.++++. .-+++..|++
T Consensus 6 ~~m~i~Vk~~~g~---~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qr-L~~~gk~L-~d~~tL~~~--~i~~g~~i~l 78 (89)
T 1wy8_A 6 SGMWIQVRTIDGS---KTCTIEDVSRKATIEELRERVWALFDVRPECQR-LFYRGKQL-ENGYTLFDY--DVGLNDIIQL 78 (89)
T ss_dssp SCEEEEEEETTCS---CEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEE-EEETTEEC-CSSSBHHHH--TCCTTCEEEE
T ss_pred CcEEEEEEECCCC---ceEEEEecCCCCCHHHHHHHHHHHHCcChhhEE-EEECCeEC-CCCCCHHHC--CCCCCCEEEE
Confidence 3466777654221 12346 489999999999999999999876543 44466654 456677664 1223567777
Q ss_pred EEc
Q psy7717 105 NYC 107 (113)
Q Consensus 105 ~Ys 107 (113)
...
T Consensus 79 ~~~ 81 (89)
T 1wy8_A 79 LVR 81 (89)
T ss_dssp EEC
T ss_pred EEe
Confidence 654
No 45
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=69.05 E-value=13 Score=23.19 Aligned_cols=76 Identities=9% Similarity=0.078 Sum_probs=47.4
Q ss_pred cccCCCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCC--
Q psy7717 21 GAEAKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFAT-- 98 (113)
Q Consensus 21 ~~k~p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kd-- 98 (113)
-......+.|.|+...+ +.-.+.|+.+.||++|...|.++.++++++- -|+.+++.+ ..+.++++ |+.
T Consensus 16 ~~~~~~~m~I~Vk~~~g----~~~~l~v~~~~TV~~LK~~I~~~~gip~~~q-rLi~~Gk~L-~D~~tL~~----~~i~~ 85 (98)
T 4hcn_B 16 LYFQGRPMQIFVKTLTG----KTITLEVESSDTIDNVKSKIQDKEGIPPDQQ-RLIFAGKQL-EDGRTLSD----YNIQK 85 (98)
T ss_dssp ------CCEEEEEETTC----CEEEEECCTTCBHHHHHHHHHHHHCCCGGGC-EEEETTEEC-CTTCBSGG----GTCCT
T ss_pred CCCCCCeEEEEEEeCCC----CEEEEEECCCCcHHHHHHHHHHHhCCChhHE-EEEECCEEC-CCCCcHHH----CCCCC
Confidence 34455677888876432 2335679999999999999999999887643 334466654 45666665 444
Q ss_pred CCEEEEEE
Q psy7717 99 NGSLVLNY 106 (113)
Q Consensus 99 DGfLyi~Y 106 (113)
+..|++..
T Consensus 86 g~~i~l~~ 93 (98)
T 4hcn_B 86 ESTLHLVL 93 (98)
T ss_dssp TEEEEEEC
T ss_pred CCEEEEEE
Confidence 44566543
No 46
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=68.23 E-value=16 Score=21.63 Aligned_cols=75 Identities=17% Similarity=0.143 Sum_probs=47.8
Q ss_pred CCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhh---hCCCCCCeEEEEEcCccCCCccchHHHHHHhcCC--C
Q psy7717 25 KVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKS---IKMDPSESLFIYVNQSFAPSPDTTIRALYDSFAT--N 99 (113)
Q Consensus 25 p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~---L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kd--D 99 (113)
|..+.|.|+...+ +...+-|+.+.||+++-..|..+ -++++++ .-|+.+++.+ ..+.++++ |+. +
T Consensus 3 ~~~m~i~vk~~~g----~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~-qrLi~~Gk~L-~D~~tL~~----~~i~~g 72 (85)
T 2wyq_A 3 PMAVTITLKTLQQ----QTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAG-QKLIYAGKIL-SDDVPIRD----YRIDEK 72 (85)
T ss_dssp -CCEEEEEEETTS----CEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGG-EEEEETTEEC-CTTSBGGG----GCCCTT
T ss_pred CceEEEEEEECCC----CEEEEEECCCCCHHHHHHHHHhhccccCCCHHH-eEEEECCEEC-cCCCCHHH----cCCCCC
Confidence 5567788876532 12246799999999999999998 4566543 3344566654 44566655 454 6
Q ss_pred CEEEEEEccc
Q psy7717 100 GSLVLNYCKT 109 (113)
Q Consensus 100 GfLyi~Ys~~ 109 (113)
..|++..+..
T Consensus 73 ~~i~l~~~~~ 82 (85)
T 2wyq_A 73 NFVVVMVTKT 82 (85)
T ss_dssp SEEEEEEC--
T ss_pred CEEEEEEcCC
Confidence 6888876543
No 47
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=67.67 E-value=23 Score=23.12 Aligned_cols=59 Identities=8% Similarity=0.102 Sum_probs=41.0
Q ss_pred cceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCC--CCEEEEEEc
Q psy7717 43 KKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFAT--NGSLVLNYC 107 (113)
Q Consensus 43 k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kd--DGfLyi~Ys 107 (113)
...+.|+.+.|++++...|.++.++++++- -|+.++..+ ..+.++++ |+. +..|++...
T Consensus 88 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q-rL~~~g~~L-~d~~tL~~----~~i~~~~~i~l~~r 148 (152)
T 3b08_A 88 TITLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQL-EDGRTLSD----YNIQKESTLHLVLR 148 (152)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHCCCGGGE-EEEETTEEC-CTTSBTGG----GTCCTTCEEEEEEC
T ss_pred EEEEEeCCCCcHHHHHHHHHHHhCcChhhE-EEEECCEEC-CCCCCHHH----cCCCCCCEEEEEEe
Confidence 345678999999999999999999987643 344566654 34556654 343 567777654
No 48
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=67.29 E-value=14 Score=22.91 Aligned_cols=58 Identities=9% Similarity=0.092 Sum_probs=41.1
Q ss_pred eEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCC--CCEEEEEEcc
Q psy7717 45 KWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFAT--NGSLVLNYCK 108 (113)
Q Consensus 45 KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kd--DGfLyi~Ys~ 108 (113)
.+.|+.+.||++|...|.++.++++++ .-|+.+++.+ ..+.++++ |+. +..|++....
T Consensus 14 ~~~v~~~~TV~~LK~~I~~~~gi~~~~-qrL~~~Gk~L-~D~~tL~~----~gi~~g~~i~l~~~~ 73 (98)
T 1yx5_B 14 TLEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQL-EDGRTLSD----YNIQKESTLHLVLRL 73 (98)
T ss_dssp EEECCTTCBHHHHHHHHHHHTCCCGGG-EEEEETTEEC-CTTSBTGG----GTCCTTCEEEEEECC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChhh-EEEEECCEEC-CCCCCHHH----cCCCCCCEEEEEEeC
Confidence 567899999999999999999998764 4445577654 34566654 343 6677776543
No 49
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=66.44 E-value=13 Score=22.72 Aligned_cols=59 Identities=8% Similarity=0.089 Sum_probs=41.6
Q ss_pred eEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCCCCEEEEEEc
Q psy7717 45 KWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVLNYC 107 (113)
Q Consensus 45 KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kdDGfLyi~Ys 107 (113)
.+.|+.+.||++|...|.++.+++++. .-|+.++..+ ..+.+++++ .-+++..|++...
T Consensus 15 ~~~v~~~~TV~~LK~~i~~~~gip~~~-qrL~~~G~~L-~d~~tL~~~--~i~~~~~i~l~~r 73 (96)
T 3k9o_B 15 TLEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQL-EDGRTLSDY--NIQKESTLHLVLR 73 (96)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGG-EEEEETTEEC-CTTSBTGGG--TCCTTCEEEEEEC
T ss_pred EEEECCCCCHHHHHHHHHhhhCCChhH-EEEEECCEEC-CCCCcHHHc--CCCCCCEEEEEEE
Confidence 467899999999999999999998764 4455577654 456677653 1223667777654
No 50
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=65.77 E-value=21 Score=22.05 Aligned_cols=73 Identities=12% Similarity=0.162 Sum_probs=46.9
Q ss_pred CCCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCCCCEEE
Q psy7717 24 AKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLV 103 (113)
Q Consensus 24 ~p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kdDGfLy 103 (113)
.+..+.|.|+. + +...+.|+.+.||++|...|.++.++++++- -|+.+++.+ ..+.++++. .-+++..|+
T Consensus 16 ~~~~m~I~Vk~-g-----~~~~l~v~~~~TV~~LK~~I~~~~gip~~~q-rLi~~Gk~L-~D~~tL~~y--~I~~gstI~ 85 (93)
T 2l7r_A 16 PRGSMQLFVRA-Q-----ELHTFEVTGQETVAQIKAHVASLEGIAPEDQ-VVLLAGAPL-EDEATLGQC--GVEALTTLE 85 (93)
T ss_dssp ----CEEEEES-S-----SEEEEECCSSCBHHHHHHHHHHHHTCCGGGC-EEEETTEEC-CTTSBHHHH--TCCSSCEEE
T ss_pred CCCcEEEEEEC-C-----CEEEEEeCCCCcHHHHHHHHHHHhCcChhHE-EEEECCEEC-CCCCcHHHC--CCCCCCEEE
Confidence 34557777765 3 3445779999999999999999999887643 334466654 456677664 122355677
Q ss_pred EEE
Q psy7717 104 LNY 106 (113)
Q Consensus 104 i~Y 106 (113)
+..
T Consensus 86 lv~ 88 (93)
T 2l7r_A 86 VAG 88 (93)
T ss_dssp EEC
T ss_pred EEE
Confidence 654
No 51
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=65.74 E-value=7.4 Score=25.49 Aligned_cols=64 Identities=17% Similarity=0.372 Sum_probs=50.0
Q ss_pred CeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCC
Q psy7717 26 VKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFAT 98 (113)
Q Consensus 26 ~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kd 98 (113)
..|.|.|...+ ....|+|..+..+..++....+|.+++.+.-.|||=+..+ ++++|-.+| ...|
T Consensus 20 ~~IniKV~~~g-----~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI--~~~~TP~~L--~meD 83 (95)
T 2l76_A 20 RLFPLKIRCRA-----DLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETEL--SPTATPRTL--KLGV 83 (95)
T ss_dssp CCEEEEEECSS-----SEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEEC--CTTSCHHHH--TCCS
T ss_pred CeEEEEEEcCC-----cEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCC--CCCCCHhHc--CCCC
Confidence 44777776322 5667999999999999999999999999988888877664 457788887 4444
No 52
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=61.69 E-value=13 Score=22.72 Aligned_cols=59 Identities=10% Similarity=0.077 Sum_probs=40.4
Q ss_pred eEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCCCCEEEEEEc
Q psy7717 45 KWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVLNYC 107 (113)
Q Consensus 45 KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kdDGfLyi~Ys 107 (113)
.+.|+.+.||++|...|..+.++++++-- |+.+++.+ ..+.++++. .-+++..|++...
T Consensus 14 ~l~v~~~~TV~~LK~~I~~~~gip~~~qr-Li~~Gk~L-~D~~tL~~~--~i~~g~~l~l~~r 72 (88)
T 4fbj_B 14 EIDIEPTDKVERIKERVEEKEGIPPQQQR-LIYSGKQM-NDEKTAADY--KILGGSVLHLVLA 72 (88)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGCE-EEETTEEC-CTTSBTTTT--TCCTTCEEEEECB
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChhHEE-EEECCeEC-CCCCcHHHc--CCCCCCEEEEEEE
Confidence 46789999999999999999998876433 33466654 446677663 1223557777654
No 53
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=61.17 E-value=30 Score=22.26 Aligned_cols=72 Identities=18% Similarity=0.260 Sum_probs=54.8
Q ss_pred CeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCCC
Q psy7717 26 VKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATN 99 (113)
Q Consensus 26 ~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kdD 99 (113)
.||...+-- .+-|.|--+...||++..|..+++|--...+.++..+ -+.-|.-+=.++.++-|++|=+|+.+
T Consensus 9 ~kVtFkItl-tSdpklpfkvlsVPE~~PftAVlkfaaEeF~vp~~Ts-AiiT~dGiGInP~QtAGnvFlKhGse 80 (92)
T 1j0g_A 9 SKVSFKITL-TSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATS-AIITNDGIGINPAQTAGNVFLKHGSE 80 (92)
T ss_dssp CEEEEEEEE-TTSTTCCEEEEEEETTSBHHHHHHHHHHHTTCCSSSE-EEECTTSCCCCCSSBHHHHHHHTCSE
T ss_pred ceEEEEEEE-ccCCCCCceEEecCccCchHHHHHHHHHHcCCCccce-EEEecCCcccChhhccchhhhhcCce
Confidence 455443332 4456667788899999999999999999999988765 34445555577889999999999864
No 54
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=60.63 E-value=8.7 Score=22.71 Aligned_cols=21 Identities=19% Similarity=0.407 Sum_probs=18.5
Q ss_pred HHHHhhhCCCCCCeEEEEEcC
Q psy7717 59 SFTKKSIKMDPSESLFIYVNQ 79 (113)
Q Consensus 59 ~~lrk~L~l~~~~sLFlyVnn 79 (113)
+-+|++|++.+++.|.+++.+
T Consensus 28 keiR~~Lgi~~Gd~l~i~~~~ 48 (59)
T 1yfb_A 28 IELRRTLGIAEKDALEIYVDD 48 (59)
T ss_dssp HHHHHHTTCCTTCEEEEEEET
T ss_pred HHHHHHcCCCCCCEEEEEEEC
Confidence 568999999999999998865
No 55
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=59.34 E-value=9.8 Score=24.48 Aligned_cols=30 Identities=17% Similarity=0.080 Sum_probs=24.4
Q ss_pred EEecCCccHHhHHHHHHhhhCCCCCCeEEEE
Q psy7717 46 WLVHVDQNVASIISFTKKSIKMDPSESLFIY 76 (113)
Q Consensus 46 flV~~~~tv~~~~~~lrk~L~l~~~~sLFly 76 (113)
..||.+.+++++..-|+.||++. +.-+|.|
T Consensus 26 IrvP~di~~~~L~dKi~~RLk~~-~~~l~~y 55 (85)
T 1ip9_A 26 LMLKGDTTYKELRSKIAPRIDTD-NFKLQTK 55 (85)
T ss_dssp EEECSCCCHHHHHHHHHHHHTSS-CEEEEEC
T ss_pred EECCCCCCHHHHHHHHHHHhccc-ceEEEEe
Confidence 46999999999999999999994 3445554
No 56
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=59.11 E-value=6.6 Score=24.08 Aligned_cols=41 Identities=10% Similarity=0.225 Sum_probs=19.9
Q ss_pred HHHHhhhCCCCCCeEEEEEcC-cc--CCCcc---chHHHHHHhcCCC
Q psy7717 59 SFTKKSIKMDPSESLFIYVNQ-SF--APSPD---TTIRALYDSFATN 99 (113)
Q Consensus 59 ~~lrk~L~l~~~~sLFlyVnn-~~--~P~~d---~t~~~LY~~~kdD 99 (113)
+-++++|++.+++.+.+.+.+ .+ .|... .++.++...+..|
T Consensus 19 k~~~~~lgl~~gd~v~i~~~~~~iii~p~~~~~~~~l~~ll~~~~~~ 65 (82)
T 1mvf_D 19 ATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPE 65 (82)
T ss_dssp HHHHHHTTCCTTCBEEEEEETTEEEEEEC------------------
T ss_pred HHHHHHcCCCCCCEEEEEEECCEEEEEECCCCCcCCHHHHHhhcccc
Confidence 557899999999999998765 32 35433 4788888777653
No 57
>3tuo_A DNA-binding protein SATB1; 1.70A {Homo sapiens}
Probab=58.65 E-value=37 Score=22.55 Aligned_cols=69 Identities=20% Similarity=0.238 Sum_probs=47.6
Q ss_pred eeEE--EEEecCCCCCcccc-----eEEecCCccHHhHHHHHHhhhCCCCC----CeEEEEEcC-------ccCCCccch
Q psy7717 27 KVPI--LLRATGDAPILTKK-----KWLVHVDQNVASIISFTKKSIKMDPS----ESLFIYVNQ-------SFAPSPDTT 88 (113)
Q Consensus 27 kVpV--i~e~~~~~P~L~k~-----KflV~~~~tv~~~~~~lrk~L~l~~~----~sLFlyVnn-------~~~P~~d~t 88 (113)
.+|| ++|...+....+.+ --+||++..|.|++...=.+|+-+.+ ..=-+-|+| .+.+.++.|
T Consensus 7 mlPV~CVVE~~~~~~~~~~~~E~~syviI~~~t~f~qLV~taL~~LGYs~~~a~~A~G~I~v~nWkPLp~~~itd~p~~T 86 (105)
T 3tuo_A 7 MLPVFCVVEHYENAIEYDCKEEHAEFVLVRKDMLFNQLIEMALLSLGYSHSSAAQAKGLIQVGKWNPVPLSYVTDAPDAT 86 (105)
T ss_dssp EEEEEEEEEEECCCSSCCCEEEEEEEEEEETTSBGGGHHHHHHHHTTCCHHHHHHCEEEEEETTSCCBCGGGTCCCTTCB
T ss_pred ceeeEEEEEecccccccccccceeeEEEEeccchHHHHHHHHHHHcCCCchhhhhccceEEEccccCcCHHHcCCCchhh
Confidence 4455 45555444444332 24899999999999999999987632 122345777 678899999
Q ss_pred HHHHHHh
Q psy7717 89 IRALYDS 95 (113)
Q Consensus 89 ~~~LY~~ 95 (113)
+||+-.+
T Consensus 87 V~d~L~e 93 (105)
T 3tuo_A 87 VADMLQD 93 (105)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 9998654
No 58
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=58.37 E-value=27 Score=20.95 Aligned_cols=73 Identities=10% Similarity=0.190 Sum_probs=48.9
Q ss_pred CCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCC-CCEEE
Q psy7717 25 KVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFAT-NGSLV 103 (113)
Q Consensus 25 p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kd-DGfLy 103 (113)
|..+.|.|+...+ +...+.|..+.||.+|...|..+.++++++-- |+.+++.+ ..+.++++ |+. +..|+
T Consensus 3 ~~~m~i~Vk~~~g----~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qr-Li~~Gk~L-~d~~tL~~----~~i~g~~i~ 72 (90)
T 4dwf_A 3 PDSLEVLVKTLDS----QTRTFIVGAQMNVKEFKEHIAASVSIPSEKQR-LIYQGRVL-QDDKKLQE----YNVGGKVIH 72 (90)
T ss_dssp CCEEEEEEEETTC----CEEEEEEETTCBHHHHHHHHHHHHTCCGGGEE-EEETTEEC-CTTSBGGG----GTCTTEEEE
T ss_pred CcEEEEEEEcCCC----CEEEEEECCCCCHHHHHHHHHHHhCCCHHHEE-EEECCeEC-CCCCCHHH----cCCCCcEEE
Confidence 4567777776432 22346799999999999999999999876543 34466654 44667765 233 45666
Q ss_pred EEEc
Q psy7717 104 LNYC 107 (113)
Q Consensus 104 i~Ys 107 (113)
+...
T Consensus 73 l~~~ 76 (90)
T 4dwf_A 73 LVER 76 (90)
T ss_dssp EEEC
T ss_pred EEec
Confidence 6554
No 59
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=57.92 E-value=37 Score=22.34 Aligned_cols=72 Identities=11% Similarity=0.130 Sum_probs=48.8
Q ss_pred CCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCC--CCEE
Q psy7717 25 KVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFAT--NGSL 102 (113)
Q Consensus 25 p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kd--DGfL 102 (113)
+..+.|.|+..+ +...+.|+.+.||.+|...|..+.++++++ .-|+.+++.+ ..+.++++ |+. +..|
T Consensus 30 ~~~m~I~Vk~~g-----~~~~l~v~~~~TV~~LK~~I~~~~gip~~~-QrLi~~Gk~L-~D~~tL~d----ygI~~gstI 98 (125)
T 1j8c_A 30 PKIIKVTVKTPK-----EKEEFAVPENSSVQQFKEAISKRFKSQTDQ-LVLIFAGKIL-KDQDTLIQ----HGIHDGLTV 98 (125)
T ss_dssp CCCEEEEEECSS-----CEEEEEECTTCCHHHHHHHHHHHHCSCSSS-EEEEETTEEE-STTSCGGG----TTCSSSEEE
T ss_pred CCcEEEEEEeCC-----eEEEEEECCCCcHHHHHHHHHHHHCcCcce-EEEEECCEEc-CCCCCHHH----cCCCCCCEE
Confidence 456788887642 234567999999999999999999988764 3444566654 34566654 454 4466
Q ss_pred EEEEc
Q psy7717 103 VLNYC 107 (113)
Q Consensus 103 yi~Ys 107 (113)
+|...
T Consensus 99 ~lv~~ 103 (125)
T 1j8c_A 99 HLVIK 103 (125)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 66543
No 60
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=57.27 E-value=12 Score=21.26 Aligned_cols=21 Identities=0% Similarity=0.189 Sum_probs=18.6
Q ss_pred HHHHhhhCCCCCCeEEEEEcC
Q psy7717 59 SFTKKSIKMDPSESLFIYVNQ 79 (113)
Q Consensus 59 ~~lrk~L~l~~~~sLFlyVnn 79 (113)
.-+|++|++.+++.+.+.+.+
T Consensus 18 k~ir~~lgi~~Gd~v~i~~~~ 38 (53)
T 2l66_A 18 AKVRQKFQIKEGDLVKVTFDE 38 (53)
T ss_dssp HHHHHHSCCCTTCEEEEEECS
T ss_pred HHHHHHcCcCCCCEEEEEEEC
Confidence 568999999999999998865
No 61
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=56.61 E-value=21 Score=24.31 Aligned_cols=40 Identities=15% Similarity=0.116 Sum_probs=33.1
Q ss_pred CCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEc
Q psy7717 38 APILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVN 78 (113)
Q Consensus 38 ~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVn 78 (113)
+|...-+-..|..+.+|++++..|.+++++...+- |-++.
T Consensus 18 llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~e-y~L~~ 57 (128)
T 2kc2_A 18 MLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDE-YSLVR 57 (128)
T ss_dssp CTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSS-EEEEE
T ss_pred cCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCccc-ccccc
Confidence 56667788899999999999999999999986655 44443
No 62
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.58 E-value=27 Score=20.27 Aligned_cols=70 Identities=10% Similarity=0.161 Sum_probs=45.4
Q ss_pred CeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCC--CCEEE
Q psy7717 26 VKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFAT--NGSLV 103 (113)
Q Consensus 26 ~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kd--DGfLy 103 (113)
..+.|.|+...+ +...+.|+.+.||+++...|.++.++++++-- |+.+++.+ ..+.++++ |+. +..|+
T Consensus 6 ~~m~i~vk~~~g----~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qr-L~~~gk~L-~d~~tL~~----~~i~~g~~i~ 75 (81)
T 2dzi_A 6 SGMQLTVKALQG----RECSLQVPEDELVSTLKQLVSEKLNVPVRQQR-LLFKGKAL-ADGKRLSD----YSIGPNSKLN 75 (81)
T ss_dssp SSEEEEEEETTS----CEEEEEECSSCBHHHHHHHHHHHTCCCTTTCE-EEETTEEC-CTTSBGGG----GTCCSSBCCE
T ss_pred CcEEEEEEeCCC----CEEEEEECCCCcHHHHHHHHHHHHCcCHHHEE-EEECCeEC-CCCCcHHH----cCCCCCCEEE
Confidence 456777765432 22346799999999999999999998876433 33466654 34566654 444 44555
Q ss_pred EE
Q psy7717 104 LN 105 (113)
Q Consensus 104 i~ 105 (113)
+.
T Consensus 76 l~ 77 (81)
T 2dzi_A 76 LV 77 (81)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 63
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=55.25 E-value=31 Score=24.92 Aligned_cols=62 Identities=16% Similarity=0.175 Sum_probs=42.7
Q ss_pred ceEEecCCccHHhHHHHHHhhhCCCCC--CeEEEEE-cCcc--CCCccchHHHHHHhcCCCCEEEEEEc
Q psy7717 44 KKWLVHVDQNVASIISFTKKSIKMDPS--ESLFIYV-NQSF--APSPDTTIRALYDSFATNGSLVLNYC 107 (113)
Q Consensus 44 ~KflV~~~~tv~~~~~~lrk~L~l~~~--~sLFlyV-nn~~--~P~~d~t~~~LY~~~kdDGfLyi~Ys 107 (113)
....+++..|+.+|...+++.++++++ -.|+.|- ++++ +-..+.||.++. -.++..|.|-+.
T Consensus 142 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~--l~~~Q~illE~r 208 (217)
T 4a3p_A 142 VTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAG--LYQGQVLVIEQK 208 (217)
T ss_dssp EEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHT--CCTTCEEEEEEC
T ss_pred eEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhC--CCCCCEEEEEEe
Confidence 346789999999999999999999875 4566554 4433 444567887752 223566666554
No 64
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=54.70 E-value=9.8 Score=28.25 Aligned_cols=62 Identities=10% Similarity=0.115 Sum_probs=46.0
Q ss_pred CCCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHH
Q psy7717 24 AKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRAL 92 (113)
Q Consensus 24 ~p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~L 92 (113)
..++|.|.|.. .=+...|.|..+.++..++....++.+++.++--|+|=+..+ ..++|..+|
T Consensus 54 p~e~InLKVk~-----dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI--~~ddTPeDL 115 (207)
T 3tix_A 54 PETHINLKVSD-----GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEI--QADQTPEDL 115 (207)
T ss_dssp -CCEEEEEEEC-----SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEEC--CSSCCTTTT
T ss_pred CCCcEEEEEec-----CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeec--CCCCCHHHc
Confidence 35688888842 224668999999999999999999999998777777744443 335666554
No 65
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.52 E-value=16 Score=23.80 Aligned_cols=41 Identities=22% Similarity=0.411 Sum_probs=27.0
Q ss_pred CCCCCeEEEEEcCccCCC---cc---chHHHHHHhcC-C-----CCEEEEEEcccc
Q psy7717 67 MDPSESLFIYVNQSFAPS---PD---TTIRALYDSFA-T-----NGSLVLNYCKTQ 110 (113)
Q Consensus 67 l~~~~sLFlyVnn~~~P~---~d---~t~~~LY~~~k-d-----DGfLyi~Ys~~~ 110 (113)
++|++++ |||+| +|- .+ ..|.+|+.+|+ . .||=+|.|.+.+
T Consensus 5 ~~p~~T~-lYV~N--L~~~~~~~~lk~~L~~lF~~yGG~Vl~VtgG~AfV~F~~~e 57 (96)
T 2diu_A 5 SSGCHTL-LYVYN--LPANKDGKSVSNRLRRLSDNCGGKVLSITGCSAILRFINQD 57 (96)
T ss_dssp CCCSSEE-EEEES--CCTTSCHHHHHHHHHHHHHTTTCCEEECCTTCEEEEESSHH
T ss_pred CCCcceE-EEEeC--CCCcCCHHHHHHHHHHHHHHcCCeeEEEecCEEEEEECCHH
Confidence 4566775 77888 232 11 13668999995 2 788888887654
No 66
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=53.88 E-value=23 Score=22.60 Aligned_cols=91 Identities=12% Similarity=0.082 Sum_probs=56.4
Q ss_pred CCCCCCCCccccccCCCeeEEEEEecCCCCCcccceEEecC-CccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccch
Q psy7717 10 PEGSAPSSPSIGAEAKVKVPILLRATGDAPILTKKKWLVHV-DQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTT 88 (113)
Q Consensus 10 ~~~~~~~~~~i~~k~p~kVpVi~e~~~~~P~L~k~KflV~~-~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t 88 (113)
.|++-.+-+....++|.-|.|.|.... .+.=+...+.|+. +.||++|...|....++++++-- |+.+++.+ ..+.+
T Consensus 10 ~~~~l~~e~~~l~~~~~~i~i~Vk~~~-~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~Qr-L~~~Gk~L-~D~~t 86 (111)
T 1we6_A 10 DESALVPEDQFLAQHPGPATIRVSKPN-ENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQK-LSGKAGFL-KDNMS 86 (111)
T ss_dssp CGGGCCCHHHHHHHCCSCEEEEECCTT-CSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSE-EECSSSBC-CTTSB
T ss_pred CccccCcHHHHHHhCCCcEEEEEEecc-cCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeE-EEECCEEC-CCCCc
Confidence 344434344455778888998887531 1111233477997 99999999999999998876433 23366543 33556
Q ss_pred HHHHHHhcCC--CCEEEEEEc
Q psy7717 89 IRALYDSFAT--NGSLVLNYC 107 (113)
Q Consensus 89 ~~~LY~~~kd--DGfLyi~Ys 107 (113)
+++ |+. +..|++...
T Consensus 87 L~~----y~I~~g~~l~l~~r 103 (111)
T 1we6_A 87 LAH----YNVGAGEILTLSLR 103 (111)
T ss_dssp TTT----TTCSSSCEEEEECS
T ss_pred HHH----CCCCCCCEEEEEEE
Confidence 543 344 557777543
No 67
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=53.67 E-value=37 Score=21.03 Aligned_cols=76 Identities=11% Similarity=0.048 Sum_probs=50.1
Q ss_pred cCCCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCcc-chHHHHHHhcCCCCE
Q psy7717 23 EAKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPD-TTIRALYDSFATNGS 101 (113)
Q Consensus 23 k~p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d-~t~~~LY~~~kdDGf 101 (113)
..+..+.|.|+..++ ...+-|+.+.||++|...|..+.++++++- -|+.+++.+ ..+ .++++. .-+++..
T Consensus 11 ~~~~~~~I~Vk~~~~-----~~~l~v~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~L-~D~~~tL~~y--gI~~gst 81 (94)
T 2kan_A 11 AAVRKIHVTVKFPSK-----QFTVEVDRTETVSSLKDKIHIVENTPIKRM-QLYYSGIEL-ADDYRNLNEY--GITEFSE 81 (94)
T ss_dssp SSSCCEEEEEECSSC-----EEEEEECTTCBHHHHHHHHHHHSSSCTTTE-EEEETTEEE-CCTTSBHHHH--TCCTTEE
T ss_pred cCCCCEEEEEEcCCc-----EEEEEECCCCcHHHHHHHHHHHHCcCHHHE-EEEECCEEC-CCCcccHHHC--CCCCCCE
Confidence 355667888876443 234679999999999999999999987643 344566654 334 677654 1123556
Q ss_pred EEEEEc
Q psy7717 102 LVLNYC 107 (113)
Q Consensus 102 Lyi~Ys 107 (113)
|+|...
T Consensus 82 l~lv~r 87 (94)
T 2kan_A 82 IVVFLK 87 (94)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 776654
No 68
>3gs2_A E3 ubiquitin-protein ligase RING2; RING1B, CBOX, CBX7, polycomb, E3-ligase, chromosomal protein transcription regulation, chromatin regulator; 1.70A {Homo sapiens} PDB: 3ixs_A* 3h8h_A*
Probab=53.44 E-value=48 Score=22.22 Aligned_cols=82 Identities=9% Similarity=0.219 Sum_probs=55.2
Q ss_pred eeEEEEEecCCC---CCcccce-EEecCCccHHhHHHHHHhhhCCCC------------------CCeEEEEEc-Ccc-C
Q psy7717 27 KVPILLRATGDA---PILTKKK-WLVHVDQNVASIISFTKKSIKMDP------------------SESLFIYVN-QSF-A 82 (113)
Q Consensus 27 kVpVi~e~~~~~---P~L~k~K-flV~~~~tv~~~~~~lrk~L~l~~------------------~~sLFlyVn-n~~-~ 82 (113)
-|-++|.+...+ -...+.+ .+-+++.||.++-+.|.-||.|+. +-.||+.-. +.| .
T Consensus 3 EiELVFrPHPt~~~~d~~~~~RYIKTt~nATVDHLsKYLA~Rl~Le~~~~~~e~~~~~~~~~~~~~~~IYia~~~gq~~~ 82 (111)
T 3gs2_A 3 EIELVFRPHPTLMEKDDSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGESNQMNLDTASEKQYTIYIATASGQFTV 82 (111)
T ss_dssp EEEEEEEECTTTSCCCTTCCCEEEEEETTCBHHHHHHHHHHHHHHHHHHHHHHSSCCSCCC--CCCEEEEEECTTSCEEE
T ss_pred ceEEEecCCcccccccchhceEEEEcCCCccHHHHHHHHHHHHhHHHhhccccccccCccccceeeeEEEEccCCCeEEE
Confidence 467788875321 1112334 457899999999999988776551 223444422 233 4
Q ss_pred CCccchHHHHHHhc-CCCCEEEEEEcc
Q psy7717 83 PSPDTTIRALYDSF-ATNGSLVLNYCK 108 (113)
Q Consensus 83 P~~d~t~~~LY~~~-kdDGfLyi~Ys~ 108 (113)
-+.++++.++-++| |.+.=|-|.|+-
T Consensus 83 L~gs~tLe~VneKywkvnkplelYYa~ 109 (111)
T 3gs2_A 83 LDGSFSLELVSEKYWKVNKPMELYYAP 109 (111)
T ss_dssp CCTTSBHHHHHHHHTCSSSCEEEEEEE
T ss_pred ccCcccHHHHhhhhccCCCCeeEEecc
Confidence 67789999999999 669989998874
No 69
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=53.32 E-value=38 Score=21.00 Aligned_cols=58 Identities=16% Similarity=0.150 Sum_probs=39.6
Q ss_pred CeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCC-eEEEEEcCccCCCccchHHHH
Q psy7717 26 VKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSE-SLFIYVNQSFAPSPDTTIRAL 92 (113)
Q Consensus 26 ~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~-sLFlyVnn~~~P~~d~t~~~L 92 (113)
..+.|.|+..+ +.-.+-|+.+.||++|...|..+.++++++ .|+ .+++.+ .|.++++.
T Consensus 16 ~~~~i~Vk~~g-----~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~--~~Gk~L--dd~tL~~~ 74 (95)
T 1v86_A 16 ELVDLKIIWNK-----TKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVM--YKGLVP--EDKTLREI 74 (95)
T ss_dssp CCEEEEEEETT-----EEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCB--SSSBCC--SSSBHHHH
T ss_pred ceEEEEEEECC-----EEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE--ECCeeC--CcCcHHHC
Confidence 45777776333 233467999999999999999999988653 333 466554 45566553
No 70
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=52.80 E-value=38 Score=20.89 Aligned_cols=47 Identities=11% Similarity=0.074 Sum_probs=35.2
Q ss_pred eeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCC-CeEEEE
Q psy7717 27 KVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPS-ESLFIY 76 (113)
Q Consensus 27 kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~-~sLFly 76 (113)
.|.|.|...+. + ......|+.+.||++|...|..+.+++++ +.|++.
T Consensus 7 ~v~l~I~~~~~-~--~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~ 54 (95)
T 1v6e_A 7 GVMVFISSSLN-S--FRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELY 54 (95)
T ss_dssp CEEEEEEETTS-S--SCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEE
T ss_pred EEEEEEEECCC-C--eeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEe
Confidence 48888876432 2 33556899999999999999999998866 456554
No 71
>3nyi_A FAT acid-binding protein; stearic acid, DEGV family protein, structural genomics, PSI- protein structure initiative; HET: STE; 1.90A {Eubacterium ventriosum} SCOP: c.119.1.0
Probab=49.95 E-value=37 Score=25.66 Aligned_cols=74 Identities=14% Similarity=0.116 Sum_probs=46.3
Q ss_pred CeeEEEEEecCCCCC----------------cccceE-EecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccch
Q psy7717 26 VKVPILLRATGDAPI----------------LTKKKW-LVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTT 88 (113)
Q Consensus 26 ~kVpVi~e~~~~~P~----------------L~k~Kf-lV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t 88 (113)
.||.|+..+.+++|. ++.+-| .=..+.+..+|...++..-+-.+.. -+|++. .
T Consensus 3 ~ki~IvtDSt~dl~~e~~~~~~I~vvPl~v~~~~~~y~~D~~di~~~efy~~~~~~~~~~p~T---------Sqps~~-~ 72 (297)
T 3nyi_A 3 AMYKIVSDSACDLSKEYLEKHDVTIVPLSVSFDGETYYRDGVDITRDECYQRMVDDPKLFPKT---------SLPSVE-S 72 (297)
T ss_dssp -CCEEEEEGGGCCCHHHHHHHTEEEECCEEESSSSCEEEBTTTBCHHHHHHHHHHCTTCCCEE---------ECCCHH-H
T ss_pred CCEEEEEecCCCCCHHHHHhCCeEEEEEEEEECCEEEecCCCCCCHHHHHHHHHhCCCCCcee---------cCCCHH-H
Confidence 356666666555542 344456 4445788899999997642122222 246654 6
Q ss_pred HHHHHHhcCC--CCEEEEEEccc
Q psy7717 89 IRALYDSFAT--NGSLVLNYCKT 109 (113)
Q Consensus 89 ~~~LY~~~kd--DGfLyi~Ys~~ 109 (113)
+.++|++... |..|+|+.|+.
T Consensus 73 ~~~~f~~l~~~g~~ii~i~iSs~ 95 (297)
T 3nyi_A 73 YADVFRSFVEQGFPVVCFTITTL 95 (297)
T ss_dssp HHHHHHHHHTTTCCEEEEESCTT
T ss_pred HHHHHHHHHHCCCeEEEEECCCc
Confidence 7788888765 88999998874
No 72
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=49.60 E-value=42 Score=20.41 Aligned_cols=74 Identities=11% Similarity=0.143 Sum_probs=45.2
Q ss_pred eeEEEEEecCCCCCcccceEE--ecCCccHHhHHHHHHhhh--CCCCCCeEEEEEcCccCCCccchHHHHHHhcCCCCEE
Q psy7717 27 KVPILLRATGDAPILTKKKWL--VHVDQNVASIISFTKKSI--KMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSL 102 (113)
Q Consensus 27 kVpVi~e~~~~~P~L~k~Kfl--V~~~~tv~~~~~~lrk~L--~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kdDGfL 102 (113)
.+.|.|+..++- ...+. |+.+.||++|-..|..+. ++++++-- |+.+++.+ ..+.++++....-+++..|
T Consensus 7 ~m~i~Vk~~~~~----~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~Qr-Li~~Gk~L-~D~~tL~~~~~~i~~~~~i 80 (93)
T 1wgd_A 7 GVTLLVKSPNQR----HRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQR-LIYSGKLL-LDHQCLRDLLPKQEKRHVL 80 (93)
T ss_dssp CCEEEEECSSSS----CCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCE-EEETTEEC-CSSSCHHHHSCSSSCSEEE
T ss_pred EEEEEEEeCCCC----eEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeE-EEECCEEC-cCcCCHHHHhcCCCCCCEE
Confidence 467777754321 12344 459999999999999988 77765433 33456553 3566777653222335566
Q ss_pred EEEE
Q psy7717 103 VLNY 106 (113)
Q Consensus 103 yi~Y 106 (113)
+|..
T Consensus 81 ~lv~ 84 (93)
T 1wgd_A 81 HLVC 84 (93)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 6654
No 73
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=49.32 E-value=22 Score=22.63 Aligned_cols=59 Identities=8% Similarity=0.066 Sum_probs=40.3
Q ss_pred eEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCCCCEEEEEEc
Q psy7717 45 KWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVLNYC 107 (113)
Q Consensus 45 KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kdDGfLyi~Ys 107 (113)
.+.|+.+.||++|...|..+.++++++- -|+.+++.+ ..+.++++. .-+++..|++..+
T Consensus 15 ~l~v~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~L-~D~~tL~~~--~i~~g~~i~lv~~ 73 (106)
T 3m62_B 15 PLDLEPSNTILETKTKLAQSISCEESQI-KLIYSGKVL-QDSKTVSEC--GLKDGDQVVFMVS 73 (106)
T ss_dssp EECCCTTSBHHHHHHHHHHTTTSCGGGC-EEEETTEEC-CTTSBTTTT--TCCTTCEEEEECC
T ss_pred EEEECCCCcHHHHHHHHHHHHCCChhhE-EEEECCEEC-CCcCCHHHc--CCCCCCEEEEEEc
Confidence 3568899999999999999999876543 334466654 446677663 2223667777654
No 74
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=48.69 E-value=20 Score=26.21 Aligned_cols=62 Identities=10% Similarity=0.108 Sum_probs=45.3
Q ss_pred CCCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHH
Q psy7717 24 AKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRAL 92 (113)
Q Consensus 24 ~p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~L 92 (113)
..++|.|.|.. .=+...|.|.++.++..++....++.+++..+--|+|=+..+ ..++|..+|
T Consensus 26 ~~~~I~LkV~~-----~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI--~~~~TP~dL 87 (200)
T 3pge_A 26 PETHINLKVSD-----GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRI--QADQTPEDL 87 (200)
T ss_dssp CCCCEEEEEEC-----SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEEC--CTTCCTTTT
T ss_pred CCCeEEEEEec-----CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEc--CCCCCHHHc
Confidence 35788888842 224568999999999999999999999998777777644443 334555443
No 75
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=48.15 E-value=18 Score=23.74 Aligned_cols=28 Identities=18% Similarity=0.048 Sum_probs=23.6
Q ss_pred cceEEecCCccHHhHHHHHHhhhCCCCC
Q psy7717 43 KKKWLVHVDQNVASIISFTKKSIKMDPS 70 (113)
Q Consensus 43 k~KflV~~~~tv~~~~~~lrk~L~l~~~ 70 (113)
-....||.+.+|.+|+.-|++|+++..+
T Consensus 24 ~~~i~V~~~i~f~~L~~kI~~Kl~~~~~ 51 (98)
T 1q1o_A 24 IFTLLVEKVWNFDDLIMAINSKISNTHN 51 (98)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHCS
T ss_pred EEEEEecCCCCHHHHHHHHHHHHcCCcc
Confidence 4566799999999999999999987533
No 76
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=47.63 E-value=19 Score=23.91 Aligned_cols=31 Identities=6% Similarity=0.221 Sum_probs=19.1
Q ss_pred CCCCeEEEEEcCccCCCccchHHHHHHhcCC
Q psy7717 68 DPSESLFIYVNQSFAPSPDTTIRALYDSFAT 98 (113)
Q Consensus 68 ~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kd 98 (113)
.++..|+|||.|---+-..+.|.+++..|+.
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~ 51 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCNPVGK 51 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHTTTSC
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHHhcCC
Confidence 3567899999983223344456666666654
No 77
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=47.51 E-value=15 Score=23.74 Aligned_cols=41 Identities=15% Similarity=0.140 Sum_probs=32.8
Q ss_pred CCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCc
Q psy7717 39 PILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQS 80 (113)
Q Consensus 39 P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~ 80 (113)
|..++.+.+|.++.++.+++..-.+++++++++- -|.-|++
T Consensus 17 ~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~-~Lkh~~k 57 (90)
T 2al3_A 17 PNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEY-DLKFQRT 57 (90)
T ss_dssp TTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGC-EEEETTE
T ss_pred CCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhC-eEEeCCE
Confidence 5568899999999999999999999999987543 3444554
No 78
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=46.33 E-value=47 Score=20.04 Aligned_cols=72 Identities=10% Similarity=0.143 Sum_probs=48.2
Q ss_pred CCCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCC--CCE
Q psy7717 24 AKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFAT--NGS 101 (113)
Q Consensus 24 ~p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kd--DGf 101 (113)
.+..+.|.|+..++ +...+.|+.+.||++|...|.++.++++++- -|+.+++.+ ..+.++++ |+. +..
T Consensus 14 ~~~~m~i~Vk~~~g----~~~~l~v~~~~TV~~LK~~I~~~~gip~~~q-rL~~~Gk~L-~D~~tL~~----~gi~~g~~ 83 (91)
T 3v6c_B 14 PRGSMQIFVNTLTG----THITLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQL-EDGRTLSD----YNIQKEST 83 (91)
T ss_dssp CCCSEEEEEECTTS----CEEEEEECTTCBHHHHHHHHHHHHCCCGGGC-EEEETTEEC-CTTCBTGG----GTCCTTCE
T ss_pred CCCeEEEEEEeCCC----CEEEEEECCCCCHHHHHHHHHhhhCCChhhE-EEEECCeEC-CCcCcHHH----CCCCCCCE
Confidence 35667788875432 2234679999999999999999999987643 333466653 44666665 443 556
Q ss_pred EEEE
Q psy7717 102 LVLN 105 (113)
Q Consensus 102 Lyi~ 105 (113)
|++.
T Consensus 84 i~l~ 87 (91)
T 3v6c_B 84 LHLV 87 (91)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6664
No 79
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=45.25 E-value=52 Score=20.26 Aligned_cols=51 Identities=8% Similarity=-0.009 Sum_probs=34.3
Q ss_pred CeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCC-CeEEEEE
Q psy7717 26 VKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPS-ESLFIYV 77 (113)
Q Consensus 26 ~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~-~sLFlyV 77 (113)
..|.|.|...... .-+.....++.++||++|-..|.+..++++. +.|+++-
T Consensus 8 ~~v~l~I~~~~~~-~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~ 59 (97)
T 1wjn_A 8 QLLTLKIKCSNQP-ERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYES 59 (97)
T ss_dssp CEEEEEEEESSCS-SSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEEC
T ss_pred ccEEEEEEecCCC-CCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEc
Confidence 4566766532111 1122334689999999999999999998866 5677663
No 80
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=45.22 E-value=18 Score=23.53 Aligned_cols=62 Identities=6% Similarity=0.083 Sum_probs=41.7
Q ss_pred EEecCCccHHhHHHHHHhhhCCCCC--------------CeEEEEEcCccCCCccchHHHHHHhcCC--CCEEEEEEccc
Q psy7717 46 WLVHVDQNVASIISFTKKSIKMDPS--------------ESLFIYVNQSFAPSPDTTIRALYDSFAT--NGSLVLNYCKT 109 (113)
Q Consensus 46 flV~~~~tv~~~~~~lrk~L~l~~~--------------~sLFlyVnn~~~P~~d~t~~~LY~~~kd--DGfLyi~Ys~~ 109 (113)
.-|+.+.||++|-..|..+.++++. ...-|..+++.+-..+.||++ |+. +.+|++--...
T Consensus 22 v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~d----ygI~~g~~l~lv~~lr 97 (105)
T 1v2y_A 22 VVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRD----YGIRNRDEVSFIKKLG 97 (105)
T ss_dssp EEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHH----HTCCSSEEEEEEECSC
T ss_pred EEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHH----cCCCCCCEEEEEehhc
Confidence 4588999999999999999876542 234455566654444578876 454 56777765544
Q ss_pred cc
Q psy7717 110 QA 111 (113)
Q Consensus 110 ~a 111 (113)
..
T Consensus 98 ~~ 99 (105)
T 1v2y_A 98 QK 99 (105)
T ss_dssp SC
T ss_pred cC
Confidence 43
No 81
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=45.00 E-value=57 Score=20.65 Aligned_cols=72 Identities=8% Similarity=0.114 Sum_probs=48.4
Q ss_pred CeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCC--CCEEE
Q psy7717 26 VKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFAT--NGSLV 103 (113)
Q Consensus 26 ~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kd--DGfLy 103 (113)
..+.|.|+...+ +...+.|+.+.||++|...|.++.++++++- -|+.+++.+ ..+.++++. +. +..|+
T Consensus 34 ~~m~I~Vk~~~g----~~~~l~v~~~~TV~~LK~~I~~~~gip~~~q-rLi~~Gk~L-~D~~tL~~~----gI~~gs~I~ 103 (111)
T 2ojr_A 34 LAMQIFVKTLTG----KTITLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQL-EDGRTLSDY----NIQKESTLH 103 (111)
T ss_dssp SCEEEEEECSSS----CEEEEEECTTCBHHHHHHHHHHHHCCCTTTE-EEEETTEEC-CSSCBTTTT----TCCTTCEEE
T ss_pred CeEEEEEEcCCC----CEEEEEeCCCCCHHHHHHHHHHHHCcCcccE-EEEECCEEC-CCCCcHHHc----CCCCCCEEE
Confidence 467888875422 2335679999999999999999999987643 344566654 345666543 43 55677
Q ss_pred EEEc
Q psy7717 104 LNYC 107 (113)
Q Consensus 104 i~Ys 107 (113)
+...
T Consensus 104 l~~r 107 (111)
T 2ojr_A 104 LVLR 107 (111)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 6543
No 82
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=43.46 E-value=39 Score=21.47 Aligned_cols=75 Identities=8% Similarity=0.098 Sum_probs=43.5
Q ss_pred CCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhh--CCC-CCCeEEEEEcCccCCCccchHHHHHHhcCCCCE
Q psy7717 25 KVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSI--KMD-PSESLFIYVNQSFAPSPDTTIRALYDSFATNGS 101 (113)
Q Consensus 25 p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L--~l~-~~~sLFlyVnn~~~P~~d~t~~~LY~~~kdDGf 101 (113)
+..|.|.|+..+.-. ..-.+-|+.+.||++|-..|..++ ..+ .++.|. .+++.+ ..+.++++....-+++..
T Consensus 21 ~~~m~I~VK~~~g~~--~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLI--y~Gk~L-~D~~tL~~y~~~I~~~~t 95 (99)
T 2kdb_A 21 GHPVTLIIKAPNQKY--SDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLV--YSGRLL-PDHLQLKDILRKQDEYHM 95 (99)
T ss_dssp --CEEEEEECTTSSS--CCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEE--ETTEEE-CTTSBTHHHHTTTCSEEE
T ss_pred CCeEEEEEEcCCCCE--EEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEE--ECCEEC-CCCCCHHHHhcCCCCCCE
Confidence 345777776432210 012456799999999999999876 333 445543 456554 356788875433333334
Q ss_pred EEE
Q psy7717 102 LVL 104 (113)
Q Consensus 102 Lyi 104 (113)
|+|
T Consensus 96 ihL 98 (99)
T 2kdb_A 96 VHL 98 (99)
T ss_dssp EEE
T ss_pred EEe
Confidence 443
No 83
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=43.21 E-value=51 Score=19.58 Aligned_cols=63 Identities=11% Similarity=0.229 Sum_probs=43.5
Q ss_pred cCCCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHH
Q psy7717 23 EAKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRA 91 (113)
Q Consensus 23 k~p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~ 91 (113)
..|..+.|.|+..++ +...+.|+.+.||++|...|..+.++++++- -|+.+++.+ ..+.++++
T Consensus 13 ~~~~~m~i~Vk~~~g----~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q-rLi~~Gk~L-~D~~tL~~ 75 (88)
T 4eew_A 13 EEPDSLEVLVKTLDS----QTRTFIVGAQMNVKEFKEHIAASVSIPSEKQ-RLIYQGRVL-QDDKKLQE 75 (88)
T ss_dssp --CCEEEEEEEETTS----CEEEEEEETTCBHHHHHHHHHHHHTCCGGGE-EEEETTEEC-CTTSBGGG
T ss_pred cCCCeEEEEEEcCCC----CEEEEEECCCCCHHHHHHHHHHHhCCCHHHE-EEEECCEEC-CCCCcHHH
Confidence 456778888876432 2234679999999999999999999987654 334466653 44667665
No 84
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=43.06 E-value=68 Score=20.97 Aligned_cols=53 Identities=17% Similarity=0.291 Sum_probs=33.3
Q ss_pred eEEEEEecCCCCCcc-c-ce--EEecC---CccHHhHHHHHHhhh-CCC---------CCCeEEEEEcCc
Q psy7717 28 VPILLRATGDAPILT-K-KK--WLVHV---DQNVASIISFTKKSI-KMD---------PSESLFIYVNQS 80 (113)
Q Consensus 28 VpVi~e~~~~~P~L~-k-~K--flV~~---~~tv~~~~~~lrk~L-~l~---------~~~sLFlyVnn~ 80 (113)
+.|.|+-.+.+-.+- . +. +-++. ..||.+++..|++++ +++ -...+.+|||+.
T Consensus 12 M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~ 81 (114)
T 1wgk_A 12 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDA 81 (114)
T ss_dssp EEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSS
T ss_pred cEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCe
Confidence 566666555444332 2 23 67774 369999999999775 211 112488999985
No 85
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=42.74 E-value=31 Score=22.96 Aligned_cols=58 Identities=7% Similarity=0.034 Sum_probs=40.8
Q ss_pred eEEecCCccHHhHHHHHHhhhCCCCCC-eEEEEEcCccCCCccchHHHHHHhcCC--CCEEEEEEc
Q psy7717 45 KWLVHVDQNVASIISFTKKSIKMDPSE-SLFIYVNQSFAPSPDTTIRALYDSFAT--NGSLVLNYC 107 (113)
Q Consensus 45 KflV~~~~tv~~~~~~lrk~L~l~~~~-sLFlyVnn~~~P~~d~t~~~LY~~~kd--DGfLyi~Ys 107 (113)
.+-|+.+.|++++-..|..+.++++++ .|++|-++..+ ..+.++++ |+. +..|++...
T Consensus 16 ~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L-~d~~tL~~----y~i~~~~~l~l~~~ 76 (159)
T 3rt3_B 16 QVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVAL-QDRVPLAS----QGLGPGSTVLLVVD 76 (159)
T ss_dssp EEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBC-CTTSCGGG----GTCCTTCEEEEEEC
T ss_pred EEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCC-CCCCCHHH----cCCCCCCEEEEEcc
Confidence 457899999999999999999998864 44435255554 55667664 444 567776654
No 86
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=42.53 E-value=5.2 Score=31.27 Aligned_cols=77 Identities=6% Similarity=0.116 Sum_probs=0.0
Q ss_pred CCCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHH-------HHHHhc
Q psy7717 24 AKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIR-------ALYDSF 96 (113)
Q Consensus 24 ~p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~-------~LY~~~ 96 (113)
-.++|.|.|...+ ....|.|.++.++..++...-++.+++..+--|+|=+..+.+ ++|-. +.-+.+
T Consensus 27 ~~~~i~lkv~~~~-----~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~--~~Tp~~l~med~d~i~~~ 99 (389)
T 4da1_A 27 PETHINLKVSDGS-----SEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQA--DQAPEDLDMEDNDIIEAH 99 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcEEEEEecCC-----cEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCC--CCCHHHcCCCCCCEeeee
Confidence 4478888885421 244599999999999999999999999888778876665533 34443 334444
Q ss_pred CC---CCEEEEEEc
Q psy7717 97 AT---NGSLVLNYC 107 (113)
Q Consensus 97 kd---DGfLyi~Ys 107 (113)
.+ ...+|+.|.
T Consensus 100 ~~q~gg~n~~~~~g 113 (389)
T 4da1_A 100 REQIGGENLYFQAG 113 (389)
T ss_dssp --------------
T ss_pred eccccccccceeEc
Confidence 44 445666554
No 87
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=41.71 E-value=28 Score=20.20 Aligned_cols=33 Identities=24% Similarity=0.586 Sum_probs=19.1
Q ss_pred EEEcCccCCCcc--------chHHHHHHhcCC-------------CCEEEEEEccc
Q psy7717 75 IYVNQSFAPSPD--------TTIRALYDSFAT-------------NGSLVLNYCKT 109 (113)
Q Consensus 75 lyVnn~~~P~~d--------~t~~~LY~~~kd-------------DGfLyi~Ys~~ 109 (113)
|||+| +|... +.+.+++..|+. -|+-+|.|.+.
T Consensus 4 l~V~n--Lp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~ 57 (81)
T 2krb_A 4 IVVDN--VPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASP 57 (81)
T ss_dssp EEEES--CCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSH
T ss_pred EEEeC--CCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCH
Confidence 56777 35433 445566666652 26777777654
No 88
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=41.57 E-value=42 Score=19.13 Aligned_cols=57 Identities=12% Similarity=0.059 Sum_probs=39.8
Q ss_pred ceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCC--CCEEEEEE
Q psy7717 44 KKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFAT--NGSLVLNY 106 (113)
Q Consensus 44 ~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kd--DGfLyi~Y 106 (113)
..+.|+.+.|++++...|..+.++++++ .-|+.+++.+ ..+.++++ |+. +..|++..
T Consensus 16 ~~~~v~~~~tV~~LK~~i~~~~~i~~~~-qrL~~~gk~L-~d~~tL~~----~~i~~g~~i~l~~ 74 (77)
T 2bwf_A 16 WEVNVAPESTVLQFKEAINKANGIPVAN-QRLIYSGKIL-KDDQTVES----YHIQDGHSVHLVK 74 (77)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGG-EEEEETTEEC-CTTSBTGG----GTCCTTCEEEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHhCCCHHH-EEEEECCeEc-CCCCCHHH----cCCCCCCEEEEEE
Confidence 4567999999999999999999998764 3444566554 34556654 454 55777654
No 89
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=41.49 E-value=51 Score=19.09 Aligned_cols=70 Identities=11% Similarity=0.153 Sum_probs=46.8
Q ss_pred eeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCC--CCEEEE
Q psy7717 27 KVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFAT--NGSLVL 104 (113)
Q Consensus 27 kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kd--DGfLyi 104 (113)
++.|.|+...+ +...+-|+.+.||+++...|..+.++++++- -|+.+++.+ ..+.++++ |+. +..|++
T Consensus 4 ~m~i~Vk~~~g----~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q-rL~~~G~~L-~d~~tL~~----~~i~~~~~l~l 73 (79)
T 3phx_B 4 PLSILVRNNKG----RSSTYEVRLTQTVAHLKQQVSGLEGVQDDLF-WLTFEGKPL-EDQLPLGE----YGLKPLSTVFM 73 (79)
T ss_dssp CEEEEEECTTS----CEEEEEECTTSBHHHHHHHHHHHHTCCGGGE-EEEETTEEC-CTTSBGGG----GTCCTTCEEEE
T ss_pred CEEEEEEeCCC----CEEEEEECCcChHHHHHHHHHhhcCCCHHHE-EEEECCEEC-CCCCcHHH----CCCCCCCEEEE
Confidence 45666654322 2334679999999999999999999987653 444566653 34666665 443 557776
Q ss_pred EE
Q psy7717 105 NY 106 (113)
Q Consensus 105 ~Y 106 (113)
..
T Consensus 74 ~~ 75 (79)
T 3phx_B 74 NL 75 (79)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 90
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=41.35 E-value=63 Score=20.10 Aligned_cols=74 Identities=14% Similarity=0.140 Sum_probs=44.2
Q ss_pred eeEEEEEec-CCCCCcccc--eEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCCCCEEE
Q psy7717 27 KVPILLRAT-GDAPILTKK--KWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLV 103 (113)
Q Consensus 27 kVpVi~e~~-~~~P~L~k~--KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kdDGfLy 103 (113)
++.|.|+.. ++ +..+ .+-|+.+.||++|...|..+.++++++-- |+.+++.+-..+.++++. .-+++..|+
T Consensus 7 ~m~I~Vk~~~~~---~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qr-L~~~gk~L~D~~~tL~~y--gI~~g~~l~ 80 (102)
T 1v5o_A 7 GMLITVYCVRRD---LTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQ-IVYMEQLLTDDHCSLGSY--GLKDGDMVV 80 (102)
T ss_dssp CEEEEEEECCCC---CCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBC-EEETTEEECCSSSBHHHH--TCCTTEEEE
T ss_pred eEEEEEEECCCC---cCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeE-EEECCEECCCCcccHHHC--CCCCCCEEE
Confidence 456666543 32 2222 35689999999999999999998865432 334565432222467653 122344666
Q ss_pred EEE
Q psy7717 104 LNY 106 (113)
Q Consensus 104 i~Y 106 (113)
|..
T Consensus 81 l~~ 83 (102)
T 1v5o_A 81 LLQ 83 (102)
T ss_dssp ECB
T ss_pred EEE
Confidence 643
No 91
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=40.49 E-value=39 Score=20.39 Aligned_cols=38 Identities=18% Similarity=0.350 Sum_probs=29.1
Q ss_pred cceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCc
Q psy7717 43 KKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSP 85 (113)
Q Consensus 43 k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~ 85 (113)
....-+++..|+++++ ++|++++++. -+.+|+...|..
T Consensus 12 ~~~~ev~~g~Tv~dLL----~~Lgl~~~~V-vV~vNG~~v~~d 49 (74)
T 2l32_A 12 TSEVAVDDDGTYADLV----RAVDLSPHEV-TVLVDGRPVPED 49 (74)
T ss_dssp EEEEECSTTCSHHHHH----HTTCCCSSCC-CEECCCCCCCTT
T ss_pred ceeEEcCCCCcHHHHH----HHcCCCcceE-EEEECCEECCHH
Confidence 3346799999999866 5789998877 488999876653
No 92
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=40.38 E-value=83 Score=21.21 Aligned_cols=75 Identities=8% Similarity=0.120 Sum_probs=47.8
Q ss_pred ccCCCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCC--C
Q psy7717 22 AEAKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFAT--N 99 (113)
Q Consensus 22 ~k~p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kd--D 99 (113)
...+..+.|.|+..++ +...+-|+.+.||++|...|..+.++++++- -|+.+++. ...+.++++ |+. +
T Consensus 15 ~~~~~~m~i~Vk~~~g----~~~~l~v~~~~tV~~lK~~I~~~~gip~~~Q-rL~~~g~~-L~d~~tL~~----~~i~~~ 84 (172)
T 3u30_A 15 VPRGSHMQIFVKTLTG----KTITLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQ-LEDGRTLSD----YNIQKE 84 (172)
T ss_dssp ----CCEEEEEEETTT----EEEEEEECTTCBHHHHHHHHHHHHCCCGGGE-EEEETTEE-CCTTCBTGG----GTCCTT
T ss_pred CCCCCcEEEEEEeCCC----CEEEEEECCCCcHHHHHHHHHHHHCcChHHE-EEEECCcc-ccccCCHhH----cCCccc
Confidence 3455668888875432 2234679999999999999999999987643 33345654 345667665 343 5
Q ss_pred CEEEEEE
Q psy7717 100 GSLVLNY 106 (113)
Q Consensus 100 GfLyi~Y 106 (113)
..|++..
T Consensus 85 ~~l~l~~ 91 (172)
T 3u30_A 85 STLHLVL 91 (172)
T ss_dssp CEEEEEE
T ss_pred ceeeeee
Confidence 5666654
No 93
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=40.28 E-value=47 Score=20.56 Aligned_cols=42 Identities=10% Similarity=0.078 Sum_probs=29.9
Q ss_pred cCCccHHhHHHHH-HhhhCCCCCCeEEEEEcCccCCCccchHHHH
Q psy7717 49 HVDQNVASIISFT-KKSIKMDPSESLFIYVNQSFAPSPDTTIRAL 92 (113)
Q Consensus 49 ~~~~tv~~~~~~l-rk~L~l~~~~sLFlyVnn~~~P~~d~t~~~L 92 (113)
+++.||++|-..| ..+-++++++--.+ .+++.+ ..+.++++.
T Consensus 21 ~~~~TV~~lK~~I~~~~~gip~~~QrLi-~~Gk~L-~D~~tL~~y 63 (87)
T 2lxa_A 21 SPSDTILQIKQHLISEEKASHISEIKLL-LKGKVL-HDNLFLSDL 63 (87)
T ss_dssp CTTCBHHHHHHHHHHTTSCSSSTTEEEE-ETTEEC-CTTCBHHHH
T ss_pred CCCCcHHHHHHHHHHHhcCCChHHEEEE-ECCEEC-cCcCCHHHc
Confidence 4899999999999 77778877654333 466553 456787753
No 94
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=40.27 E-value=24 Score=21.28 Aligned_cols=35 Identities=3% Similarity=0.319 Sum_probs=21.4
Q ss_pred EEEcCccCCC-ccchHHHHHHhcCC----------CCEEEEEEcccc
Q psy7717 75 IYVNQSFAPS-PDTTIRALYDSFAT----------NGSLVLNYCKTQ 110 (113)
Q Consensus 75 lyVnn~~~P~-~d~t~~~LY~~~kd----------DGfLyi~Ys~~~ 110 (113)
|||+| +.+. .++.|.+++..|+. -||=+|.|.+.+
T Consensus 14 l~V~~-Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~ 59 (89)
T 3d2w_A 14 VFVGR-CTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDK 59 (89)
T ss_dssp EEEES-CCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHH
T ss_pred EEEeC-CCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHH
Confidence 45677 3222 34456777777763 378888887653
No 95
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=40.22 E-value=72 Score=20.46 Aligned_cols=54 Identities=17% Similarity=0.185 Sum_probs=41.3
Q ss_pred eeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCC
Q psy7717 27 KVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAP 83 (113)
Q Consensus 27 kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P 83 (113)
|.+|.|-....+ .--++-|.++.|+..|...|.++-++++.+-.+||=+..+..
T Consensus 12 rkvvHVf~~~~a---~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l 65 (94)
T 4efo_A 12 RMVIHVFSLQQM---TAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVL 65 (94)
T ss_dssp EEEEEEEETTTT---EEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECC
T ss_pred ceeEEEEEcccc---eEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCcccc
Confidence 555666555444 445589999999999999999999999988888887744433
No 96
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=39.77 E-value=39 Score=20.75 Aligned_cols=11 Identities=27% Similarity=0.631 Sum_probs=7.5
Q ss_pred CEEEEEEcccc
Q psy7717 100 GSLVLNYCKTQ 110 (113)
Q Consensus 100 GfLyi~Ys~~~ 110 (113)
||-+|.|.+.+
T Consensus 62 G~afV~f~~~~ 72 (105)
T 2nlw_A 62 GYIFLEYASPA 72 (105)
T ss_dssp CEEEEEECSSS
T ss_pred eEEEEEECCHH
Confidence 67777776654
No 97
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=39.48 E-value=77 Score=20.60 Aligned_cols=61 Identities=13% Similarity=0.095 Sum_probs=41.1
Q ss_pred eeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHH
Q psy7717 27 KVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRA 91 (113)
Q Consensus 27 kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~ 91 (113)
++-|.|+-...-. ..-.+.|.++.|++++-.-|..+.++++..-= ++.+++. -..+.|+++
T Consensus 24 ~l~v~v~d~~s~~--~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QR-li~ggkl-l~D~~TL~~ 84 (105)
T 4dbg_A 24 RLWVSVEDAQMHT--VTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQ-WVIGQRL-ARDQETLHS 84 (105)
T ss_dssp EEEEEEEESSSCC--EEEEEEECTTCBHHHHHHHHHHHHCCCGGGEE-EEETTEE-ECTTCBTGG
T ss_pred EEEEEEEccCCCC--ceEEEEECCcChHHHHHHHHHHHhCCCHHHEE-EeccCeE-ccCcCcHHH
Confidence 5556666443211 34456789999999999999999999986544 4456653 444667754
No 98
>1pzx_A Hypothetical protein APC36103; structural genomics, two domains containing mixed alpha/beta structures, PSI; HET: PLM; 2.00A {Geobacillus stearothermophilus} SCOP: c.119.1.1
Probab=38.74 E-value=45 Score=25.07 Aligned_cols=53 Identities=11% Similarity=0.256 Sum_probs=34.2
Q ss_pred eEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCC--CCEEEEEEccc
Q psy7717 45 KWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFAT--NGSLVLNYCKT 109 (113)
Q Consensus 45 KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kd--DGfLyi~Ys~~ 109 (113)
-|.=..+.+..+|...+++. ++ |.. -+|++. .+.++|+++.. |..|+|+.|+.
T Consensus 38 ~y~D~~di~~~efy~~~~~~-~~-p~T---------Sqps~~-~~~~~f~~l~~~g~~ii~i~iSs~ 92 (289)
T 1pzx_A 38 DYKDGITIEPKQVYDAMRQG-HT-VKT---------AQPSPL-AMKELFLPYAKENRPCLYIAFSSK 92 (289)
T ss_dssp EEEBTTTBCHHHHHHHHTTT-CC-CEE---------ECCCHH-HHHHHHHHHHHTTCCEEEEECCTT
T ss_pred EEecCCCCCHHHHHHHHHhC-CC-Cee---------CCCCHH-HHHHHHHHHHhCCCeEEEEECCCc
Confidence 34333467888999888753 12 222 246654 47778877743 67999998864
No 99
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=38.69 E-value=39 Score=20.54 Aligned_cols=23 Identities=4% Similarity=0.247 Sum_probs=12.0
Q ss_pred cchHHHHHHhcCC-------CCEEEEEEcc
Q psy7717 86 DTTIRALYDSFAT-------NGSLVLNYCK 108 (113)
Q Consensus 86 d~t~~~LY~~~kd-------DGfLyi~Ys~ 108 (113)
++.|.+++..|+. .|+-+|.|.+
T Consensus 37 ~~~L~~~F~~~G~v~~v~i~~g~afV~f~~ 66 (97)
T 2xnq_A 37 KEDLFRIFSPYGHIMQINIKNAFGFIQFDN 66 (97)
T ss_dssp HHHHHHHHGGGSCEEEEEECSSEEEEEESS
T ss_pred HHHHHHHHHhcCCEEEEEEeCCEEEEEECC
Confidence 3445555555543 3566666654
No 100
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=37.62 E-value=75 Score=19.94 Aligned_cols=55 Identities=5% Similarity=0.020 Sum_probs=36.0
Q ss_pred CccHHhHHHHHHhhh--CCCCCCeEEEEEcCccCCCccchHHHHHHhcCCCCEEEEEEcc
Q psy7717 51 DQNVASIISFTKKSI--KMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVLNYCK 108 (113)
Q Consensus 51 ~~tv~~~~~~lrk~L--~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kdDGfLyi~Ys~ 108 (113)
+.||++|-..|..+. ++++++..=|+.+++.+ ..+.++++. .-+++..|+|.-..
T Consensus 44 ~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L-~D~~tL~~y--~i~~g~~i~lv~~~ 100 (107)
T 1x1m_A 44 GYSISFLKQLIAGKLQESVPDPELIDLIYCGRKL-KDDQTLDFY--GIQPGSTVHVLRKS 100 (107)
T ss_dssp CCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEEC-CTTCBHHHH--TCCTTCEEEEEESS
T ss_pred cCCHHHHHHHHHHHhccCCChhhcEEEEECCeEC-CCCCcHHHc--CCCCCCEEEEEeCC
Confidence 599999999999999 88877613334456554 456677764 12235567665543
No 101
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=37.31 E-value=49 Score=19.45 Aligned_cols=42 Identities=7% Similarity=0.145 Sum_probs=28.0
Q ss_pred eEEecCCccHHhHHHHHHhhhCCCCC-CeEEEEEcCccCCCccc
Q psy7717 45 KWLVHVDQNVASIISFTKKSIKMDPS-ESLFIYVNQSFAPSPDT 87 (113)
Q Consensus 45 KflV~~~~tv~~~~~~lrk~L~l~~~-~sLFlyVnn~~~P~~d~ 87 (113)
.+-+ ...|+++++..|..+-.+..- +.+-+.||+.+.+..+.
T Consensus 15 ~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~~~ 57 (74)
T 3rpf_C 15 NFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNLNT 57 (74)
T ss_dssp CEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCTTC
T ss_pred EEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCCCc
Confidence 3555 567999999999865433321 46788899987454443
No 102
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=36.99 E-value=70 Score=19.39 Aligned_cols=58 Identities=19% Similarity=0.239 Sum_probs=37.6
Q ss_pred EecCCccHHhHHHHHHhhhCCCCCCeEEE-E-EcCccCCCccchHHHHHHhcCCCCEEEEEEc
Q psy7717 47 LVHVDQNVASIISFTKKSIKMDPSESLFI-Y-VNQSFAPSPDTTIRALYDSFATNGSLVLNYC 107 (113)
Q Consensus 47 lV~~~~tv~~~~~~lrk~L~l~~~~sLFl-y-Vnn~~~P~~d~t~~~LY~~~kdDGfLyi~Ys 107 (113)
-|+.+.||++|...|..+.++++++--.+ - .+++.+ ..+.+++++ .-+++..|+|--+
T Consensus 23 ~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L-~D~~~L~~~--~i~~g~~l~l~~~ 82 (90)
T 1v5t_A 23 TLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPA-ENDVKLGAL--KLKPNTKIMMMGT 82 (90)
T ss_dssp SCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEEC-CTTSBHHHH--TCCTTEEEEEECC
T ss_pred EeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCc-CCCCCHHHc--CCCCCCEEEEEec
Confidence 56899999999999999999887643333 0 456543 445677763 1123456666544
No 103
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=36.83 E-value=40 Score=21.23 Aligned_cols=70 Identities=13% Similarity=0.168 Sum_probs=38.4
Q ss_pred CCCccccccCCCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHH
Q psy7717 15 PSSPSIGAEAKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRA 91 (113)
Q Consensus 15 ~~~~~i~~k~p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~ 91 (113)
+.+.+++-+-.-.|.|.|+..+.. -.+.|+.+.||++|...|.++.++++++--.+ .+++.+ ..+.++++
T Consensus 16 ~~t~~l~l~~~m~i~I~Vk~~g~~-----~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~Gk~L-~D~~tL~~ 85 (101)
T 3m63_B 16 PTTENLYFQGAMSLNIHIKSGQDK-----WEVNVAPESTVLQFKEAINKANGIPVANQRLI-YSGKIL-KDDQTVES 85 (101)
T ss_dssp -------------CCEEEECSSCC-----CCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEE-ETTEEC-CTTSBTTT
T ss_pred CcceeecccCCcEEEEEEEECCEE-----EEEEeCCCCCHHHHHHHHHHHHCcChHHEEEE-ECCEEC-CCcCcHHH
Confidence 334455555555677777653322 23568899999999999999999887643333 366553 44566665
No 104
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=36.83 E-value=32 Score=23.12 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=20.4
Q ss_pred hCCCCCCeEEEEEcCccCCCccchHHHHHHhcCC
Q psy7717 65 IKMDPSESLFIYVNQSFAPSPDTTIRALYDSFAT 98 (113)
Q Consensus 65 L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kd 98 (113)
+.-.++.-|.+||.|-.-+-..+.|.+|+..|+.
T Consensus 21 ~~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~ 54 (130)
T 3zzy_A 21 AMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGT 54 (130)
T ss_dssp ----CCSEEEEEEESCCSCCCHHHHHHHHTTSSC
T ss_pred ccCCCCceEEEEECCCCCCCCHHHHHHHHhCcCC
Confidence 4456778899999994324455566666666654
No 105
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=36.52 E-value=37 Score=20.39 Aligned_cols=33 Identities=6% Similarity=0.343 Sum_probs=19.3
Q ss_pred EEEcCccCCC---ccchHHHHHHhcCC-------CCEEEEEEccc
Q psy7717 75 IYVNQSFAPS---PDTTIRALYDSFAT-------NGSLVLNYCKT 109 (113)
Q Consensus 75 lyVnn~~~P~---~d~t~~~LY~~~kd-------DGfLyi~Ys~~ 109 (113)
|||.| +|. ..+.|.+++..|+. -|+-+|.|.+.
T Consensus 13 l~V~n--lp~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~ 55 (96)
T 2kvi_A 13 LFIGN--LPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNP 55 (96)
T ss_dssp EEEES--STTSCCCHHHHHHHHTTTCCCCEEEEETTEEEEEESCH
T ss_pred EEEeC--CCcccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCH
Confidence 45666 343 34455666666654 36777777654
No 106
>3fdj_A DEGV family protein; GUT microbiome, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE P6G PG4; 1.80A {Eubacterium eligens} SCOP: c.119.1.0
Probab=35.86 E-value=93 Score=23.17 Aligned_cols=69 Identities=12% Similarity=0.194 Sum_probs=38.8
Q ss_pred eeEEEEEecCCCCCcc--------------cceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHH
Q psy7717 27 KVPILLRATGDAPILT--------------KKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRAL 92 (113)
Q Consensus 27 kVpVi~e~~~~~P~L~--------------k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~L 92 (113)
||.|+..+.+++|.++ .+-|.=..+.+..+|...+++.=.+ +.. -+|++. +.
T Consensus 3 ki~IvtDSt~dl~~~~~~~I~vvPl~v~~~~~~y~D~~di~~~efy~~~~~~~~~-p~T---------Sqps~~----~~ 68 (278)
T 3fdj_A 3 AMRLVADSACDIKELRGMVFKAVPLTISTDNEEFCDDGQLDIHRMLDILEKHKGR-SYT---------ACPGID----AW 68 (278)
T ss_dssp CCEEEEEGGGCCSCCTTSEEEEECCEEECSSCEEECSTTCCHHHHHHHHHTCCSC-CEE---------ECCCHH----HH
T ss_pred CEEEEEeCCCCCChHHhCCEEEEEEEEEECCEEEecCCCCCHHHHHHHHHhCCCC-cee---------cCCCHH----HH
Confidence 5556665555555432 2233333467888899888754111 111 245543 44
Q ss_pred HHhcCC-CCEEEEEEccc
Q psy7717 93 YDSFAT-NGSLVLNYCKT 109 (113)
Q Consensus 93 Y~~~kd-DGfLyi~Ys~~ 109 (113)
.+.|.. |..|+|+.|+.
T Consensus 69 ~~~f~~~~~ii~i~iSs~ 86 (278)
T 3fdj_A 69 LEAFGDDDEIFVVTITAG 86 (278)
T ss_dssp HHHHTTCSEEEEEESCTT
T ss_pred HHHHhcCCcEEEEECCCc
Confidence 444445 88999998874
No 107
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=35.09 E-value=98 Score=20.53 Aligned_cols=64 Identities=11% Similarity=0.158 Sum_probs=44.0
Q ss_pred EEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcC------CCCEEEEEEcccccc
Q psy7717 46 WLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFA------TNGSLVLNYCKTQAW 112 (113)
Q Consensus 46 flV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~k------dDGfLyi~Ys~~~af 112 (113)
.-|..+.||+++-..|..+.++++.+-- |+.+++. ...+.|+++ |.-.. .+-.|++.+....+|
T Consensus 16 lev~~sdTV~~lK~kI~~~egIP~~qQr-Li~~Gk~-LeD~~TLsd-y~I~~~~a~~q~~stL~L~lr~~g~f 85 (118)
T 2fnj_B 16 TDAKESSTVFELKRIVEGILKRPPEEQR-LYKDDQL-LDDGKTLGE-CGFTSQTARPQAPATVGLAFRADDTF 85 (118)
T ss_dssp EEEETTSBHHHHHHHHHHHHCCCGGGEE-EEETTEE-CCTTSBHHH-HTCCTTTSBTTBCEEEEEEEBSSSCB
T ss_pred EEeCCcChHHHHHHHHHHHhCCCHHHeE-EEECCeE-CCCCCCHHH-cCcccccccCCCCCEEEEEecCCCce
Confidence 3599999999999999999999876432 3356665 356678887 33221 245678877654444
No 108
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=34.79 E-value=20 Score=21.92 Aligned_cols=29 Identities=14% Similarity=0.202 Sum_probs=22.9
Q ss_pred EecCCccHHhHHHHHHhhhCCCC-CCeEEE
Q psy7717 47 LVHVDQNVASIISFTKKSIKMDP-SESLFI 75 (113)
Q Consensus 47 lV~~~~tv~~~~~~lrk~L~l~~-~~sLFl 75 (113)
.|+.+.||++|...|.+.++++. .++|++
T Consensus 19 ~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~ 48 (80)
T 2pjh_A 19 TATKRETAATFLKKVAKEFGFQNNGFSVYI 48 (80)
T ss_dssp CCCSSCCHHHHHHHHHHHTCCCTTTCCCCC
T ss_pred EcCCcChHHHHHHHHHHHcCCCCCcceEEe
Confidence 47888999999999999998763 345554
No 109
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=34.61 E-value=76 Score=19.07 Aligned_cols=71 Identities=13% Similarity=0.106 Sum_probs=45.0
Q ss_pred CeeEEEEEecCCCCCcccceEEecCC-----ccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCC--
Q psy7717 26 VKVPILLRATGDAPILTKKKWLVHVD-----QNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFAT-- 98 (113)
Q Consensus 26 ~kVpVi~e~~~~~P~L~k~KflV~~~-----~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kd-- 98 (113)
..+.|.|+..+ +...+-|+.+ .||++|...|..+.++++++-- |+.+++.+...+.+++++ +.
T Consensus 6 ~~~~v~Vk~~~-----~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qr-L~~~Gk~L~D~~~~L~~~----~i~~ 75 (92)
T 1wxv_A 6 SGLTVTVTHSN-----EKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQK-LIFKGKSLKEMETPLSAL----GIQD 75 (92)
T ss_dssp SSEEEEEECSS-----SEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCE-EEETTEEECCSSSBHHHH----TCCS
T ss_pred CeEEEEEEECC-----EEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEE-EEECCeecCCCcccHHHC----CCCC
Confidence 35777776533 2234567875 9999999999999998866432 334666544335577663 44
Q ss_pred CCEEEEEE
Q psy7717 99 NGSLVLNY 106 (113)
Q Consensus 99 DGfLyi~Y 106 (113)
+..|+|.-
T Consensus 76 g~~i~l~~ 83 (92)
T 1wxv_A 76 GCRVMLIG 83 (92)
T ss_dssp SEEEEEES
T ss_pred CCEEEEEe
Confidence 44566643
No 110
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=34.29 E-value=87 Score=19.70 Aligned_cols=50 Identities=10% Similarity=-0.039 Sum_probs=35.7
Q ss_pred CCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCe-EEEE
Q psy7717 25 KVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSES-LFIY 76 (113)
Q Consensus 25 p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~s-LFly 76 (113)
..-|+|.|..... .-......|+.++||++|-.-|..+.++++++- |+++
T Consensus 12 ~~~v~l~It~s~~--~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~ 62 (97)
T 2kj6_A 12 DDSVHLHITHANL--KSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELY 62 (97)
T ss_dssp CCCEEEEEEETTS--SCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEE
T ss_pred CceEEEEEEECCC--CceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEe
Confidence 4567888875211 112345679999999999999999999997754 5443
No 111
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=33.62 E-value=29 Score=21.54 Aligned_cols=23 Identities=22% Similarity=0.137 Sum_probs=20.6
Q ss_pred EEecCCccHHhHHHHHHhhhCCC
Q psy7717 46 WLVHVDQNVASIISFTKKSIKMD 68 (113)
Q Consensus 46 flV~~~~tv~~~~~~lrk~L~l~ 68 (113)
..||.+.++.+|+.-|++||++.
T Consensus 6 i~V~~~i~f~~L~~kI~~kl~~~ 28 (77)
T 1pqs_A 6 LLVEKVWNFDDLIMAINSKISNT 28 (77)
T ss_dssp EECTTCCCSHHHHHHHHHHTTTT
T ss_pred EEeCCCCCHHHHHHHHHHHHccc
Confidence 46899999999999999999863
No 112
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=33.57 E-value=73 Score=18.59 Aligned_cols=36 Identities=6% Similarity=0.055 Sum_probs=26.1
Q ss_pred eEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCc
Q psy7717 45 KWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSP 85 (113)
Q Consensus 45 KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~ 85 (113)
.+-++...|+++++..| ++++ +.+.+.+|+.++|..
T Consensus 17 ~~~~~~~~tv~~Ll~~l----~~~~-~~v~vavN~~~v~~~ 52 (70)
T 1ryj_A 17 ILESGAPRRIKDVLGEL----EIPI-ETVVVKKNGQIVIDE 52 (70)
T ss_dssp EEEESSCCBHHHHHHHT----TCCT-TTEEEEETTEECCTT
T ss_pred eEECCCCCcHHHHHHHh----CCCC-CCEEEEECCEECCCc
Confidence 46778888999987755 5554 456788999987753
No 113
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=33.26 E-value=69 Score=23.27 Aligned_cols=61 Identities=15% Similarity=0.111 Sum_probs=39.5
Q ss_pred eEEecCCccHHhHHHHHHhhhCCCCCC--eEEEEEcC-c--cCCCccchHHHHHHhcCCCCEEEEEEc
Q psy7717 45 KWLVHVDQNVASIISFTKKSIKMDPSE--SLFIYVNQ-S--FAPSPDTTIRALYDSFATNGSLVLNYC 107 (113)
Q Consensus 45 KflV~~~~tv~~~~~~lrk~L~l~~~~--sLFlyVnn-~--~~P~~d~t~~~LY~~~kdDGfLyi~Ys 107 (113)
...+++..|+.++...+++.+++++++ .|+.|-++ + .+-..+.|+.++ +-.++..|.|-..
T Consensus 155 ~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~--~L~~~Q~illE~r 220 (231)
T 3jyu_A 155 SCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDA--GLYQGQVLVIEPQ 220 (231)
T ss_dssp EEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTT--TCCTTEEEEEEEC
T ss_pred EEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHh--CCCCCCEEEEEEe
Confidence 356799999999999999999998864 45554432 2 234456677653 1112445555544
No 114
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.83 E-value=78 Score=20.15 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=37.1
Q ss_pred EEecCCccHHhHHHHHHhhhCCCCCCeEEEEE-cCccCCCccchHHHHHHhcCCCCEEEEEE
Q psy7717 46 WLVHVDQNVASIISFTKKSIKMDPSESLFIYV-NQSFAPSPDTTIRALYDSFATNGSLVLNY 106 (113)
Q Consensus 46 flV~~~~tv~~~~~~lrk~L~l~~~~sLFlyV-nn~~~P~~d~t~~~LY~~~kdDGfLyi~Y 106 (113)
+-|..+.|+++|...|..+-++++.+--.++. .+. ...+.+++++ .-+.+..|+|..
T Consensus 23 v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk--L~D~~tLs~~--~I~~gstL~lvl 80 (100)
T 2dzm_A 23 VVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD--VEDSTVLKSL--HLPKNNSLYVLT 80 (100)
T ss_dssp EEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC--CCTTSBHHHH--CCCSEEEEEECC
T ss_pred EEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC--CCCcCCHHHc--CCCCCCEEEEEe
Confidence 56889999999999999999988775433332 333 2445577765 112244666644
No 115
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=32.78 E-value=82 Score=18.92 Aligned_cols=75 Identities=11% Similarity=0.114 Sum_probs=47.1
Q ss_pred CCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCCCCEEEE
Q psy7717 25 KVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFATNGSLVL 104 (113)
Q Consensus 25 p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kdDGfLyi 104 (113)
-....|.++...+ +...+-|+.+.|++++-..|..+.++++++ .-|+.+++.+-..+.++++. .-+++..|++
T Consensus 8 ~~~~~i~vk~l~g----~~~~l~v~~~~TV~~LK~~I~~~~gip~~~-QrLi~~Gk~lL~D~~tL~~y--~I~~gs~i~l 80 (84)
T 2kk8_A 8 HSHMKFLVENLNG----SSFELEVDYRDTLLVVKQKIERSQHIPVSK-QTLIVDGIVILREDLTVEQC--QIVPTSDIQL 80 (84)
T ss_dssp CCCEEEEEEETTS----CEEEEEECTTSBHHHHHHHHHHHHTCCGGG-EEEEETTEECCCSSSBHHHH--TCCTTSCEEE
T ss_pred cCceEEEEEecCC----cEEEEEECCCChHHHHHHHHHHHHCcChHH-EEEEECCEEecCCcCCHHHc--CCCCCCEEEE
Confidence 3456666665533 233467999999999999999999988764 33445665412456677654 1123445665
Q ss_pred EE
Q psy7717 105 NY 106 (113)
Q Consensus 105 ~Y 106 (113)
..
T Consensus 81 v~ 82 (84)
T 2kk8_A 81 EV 82 (84)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 116
>2dt8_A DEGV family protein; fatty acid binding, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: PLM; 1.48A {Thermus thermophilus}
Probab=32.41 E-value=99 Score=22.99 Aligned_cols=53 Identities=15% Similarity=0.262 Sum_probs=34.5
Q ss_pred EEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCC--CCEEEEEEccc
Q psy7717 46 WLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFAT--NGSLVLNYCKT 109 (113)
Q Consensus 46 flV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kd--DGfLyi~Ys~~ 109 (113)
|.=..+.+..+|...+++.=.+ |.. -+|++. .+.++|+++.. |..|+|+.|+.
T Consensus 37 y~D~~di~~~efy~~~~~~~~~-p~T---------Sqps~~-~~~~~f~~l~~~~~~ii~i~lSs~ 91 (280)
T 2dt8_A 37 YRDWEEITPTEIFQKVREGAAF-PTT---------SQPSPE-DFARVYREALEEADHVLSLHISGK 91 (280)
T ss_dssp EETTTTCCHHHHHHHHHTTCCC-CEE---------ECCCHH-HHHHHHHHHTTSCSEEEEEESCTT
T ss_pred EecCCCCCHHHHHHHHHhCCCC-ccc---------CCCCHH-HHHHHHHHHHhCCCeEEEEECCCc
Confidence 4333467888999988763222 222 246654 57778888754 77999998864
No 117
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=32.41 E-value=67 Score=18.43 Aligned_cols=56 Identities=9% Similarity=0.087 Sum_probs=38.4
Q ss_pred eEE-ecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCC--CCEEEEEE
Q psy7717 45 KWL-VHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFAT--NGSLVLNY 106 (113)
Q Consensus 45 Kfl-V~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kd--DGfLyi~Y 106 (113)
.+- |+.+.|++++...|..+.++++++- -|+.+++.+ ..+.++++ |+. +..|++..
T Consensus 17 ~l~~v~~~~tv~~lK~~i~~~~gip~~~q-rL~~~g~~L-~d~~tL~~----~~i~~g~~i~l~~ 75 (78)
T 2faz_A 17 TVDSLSRLTKVEELRRKIQELFHVEPGLQ-RLFYRGKQM-EDGHTLFD----YEVRLNDTIQLLV 75 (78)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGE-EEEETTEEC-CTTCBTTT----TTCCTTCEEEEEE
T ss_pred EEeccCCCCCHHHHHHHHHHHHCcChhhE-EEEECCEEC-CCCCCHHH----cCCCCCCEEEEEE
Confidence 356 8999999999999999999987643 334466553 34556654 343 55677654
No 118
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=31.88 E-value=1.1e+02 Score=23.32 Aligned_cols=40 Identities=13% Similarity=0.032 Sum_probs=31.5
Q ss_pred CCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEE
Q psy7717 38 APILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYV 77 (113)
Q Consensus 38 ~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyV 77 (113)
+|.=....+.|..+.|+.+++..|.++|+|...+-.=|++
T Consensus 92 l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~ 131 (371)
T 3ivf_A 92 MLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVR 131 (371)
T ss_dssp CTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEEC
T ss_pred CcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEE
Confidence 3444567789999999999999999999998765544443
No 119
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=31.67 E-value=62 Score=19.46 Aligned_cols=70 Identities=6% Similarity=0.102 Sum_probs=43.9
Q ss_pred eEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCC--CCEEEEE
Q psy7717 28 VPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFAT--NGSLVLN 105 (113)
Q Consensus 28 VpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kd--DGfLyi~ 105 (113)
+.|.+....+ +...+.|+.+.||+++...|..+.+++++. .-|+.+++.+ ..+.++++ |+. +..|++.
T Consensus 10 ~~i~v~~~~G----~~~~l~v~~~~TV~~LK~~I~~~~gip~~~-qrL~~~Gk~L-~D~~tL~~----~gi~~g~~i~l~ 79 (88)
T 1sif_A 10 LQLFIKTLTG----KTFTVEMEPSDTIENLKAKIQDKEGIPPDQ-QRLIFAGKQL-EDGRTLSD----YNIQKESTLHLV 79 (88)
T ss_dssp CEEEEEETTS----CEEEEECCTTSBHHHHHHHHHHHHCCCGGG-CEEEETTEEC-CTTSBSGG----GTCCTTCEEEEE
T ss_pred eEEEEEeCCC----CEEEEEECCCChHHHHHHHHHHHHCcChhh-EEEEECCEEC-CCCCcHHH----cCCCCCCEEEEE
Confidence 3455554432 223467899999999999999999988653 3344466654 34556654 344 5566665
Q ss_pred Ec
Q psy7717 106 YC 107 (113)
Q Consensus 106 Ys 107 (113)
..
T Consensus 80 ~r 81 (88)
T 1sif_A 80 LR 81 (88)
T ss_dssp C-
T ss_pred Ee
Confidence 43
No 120
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.34 E-value=52 Score=19.67 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=17.0
Q ss_pred EEEcCccCCCccchHHHHHHhcCC---------CCEEEEEEccc
Q psy7717 75 IYVNQSFAPSPDTTIRALYDSFAT---------NGSLVLNYCKT 109 (113)
Q Consensus 75 lyVnn~~~P~~d~t~~~LY~~~kd---------DGfLyi~Ys~~ 109 (113)
|||.| + -..++.|.+++..|+. .|+-+|.|.+.
T Consensus 18 l~V~n-~-~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~ 59 (97)
T 1x5p_A 18 LYVYG-E-DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKM 59 (97)
T ss_dssp EEEEC-S-SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSH
T ss_pred EEEcC-C-CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCH
Confidence 33555 2 3344455555555542 46666666543
No 121
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.28 E-value=52 Score=21.11 Aligned_cols=36 Identities=14% Similarity=0.224 Sum_probs=23.7
Q ss_pred eEEEEEcCccCCC--ccchHHHHHHhcCC---------CCEEEEEEccc
Q psy7717 72 SLFIYVNQSFAPS--PDTTIRALYDSFAT---------NGSLVLNYCKT 109 (113)
Q Consensus 72 sLFlyVnn~~~P~--~d~t~~~LY~~~kd---------DGfLyi~Ys~~ 109 (113)
+-=|||.| + |. .++.|.+++..|+. -||=+|.|.+.
T Consensus 16 ~~~LfV~n-L-p~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~ 62 (105)
T 1sjq_A 16 SRVIHIRK-L-PIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTE 62 (105)
T ss_dssp CCEEEECS-C-CTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSH
T ss_pred CCEEEEeC-C-CCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCH
Confidence 33466777 3 43 45578888888885 26777777654
No 122
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=30.85 E-value=1.6e+02 Score=24.07 Aligned_cols=67 Identities=13% Similarity=0.151 Sum_probs=48.4
Q ss_pred eeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEE-EcC-------ccCCCccchHHHHHHh
Q psy7717 27 KVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIY-VNQ-------SFAPSPDTTIRALYDS 95 (113)
Q Consensus 27 kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFly-Vnn-------~~~P~~d~t~~~LY~~ 95 (113)
||.|.|.+. ..|.-..-..-++..++.+++...+.++|+++|.. |=|+ +++ .+..+.+.++.++...
T Consensus 239 rv~V~f~~~-~~~~~~~F~l~Ls~~~~Y~~la~~va~~l~~dP~~-lRf~~~~~~~~~p~~~i~~~~~~~L~d~l~~ 313 (530)
T 2ylm_A 239 RVDVIFCDK-TIPNDPGFVVTLSNRMNYFQVAKTVAQRLNTDPML-LQFFKSQGYRDGPGNPLRHNYEGTLRDLLQF 313 (530)
T ss_dssp EEEEEEEET-TSTTCCCEEEEEETTCCHHHHHHHHHHHHTSCGGG-EEEECCCTTSCSCCSBCCTTCCSCHHHHSTT
T ss_pred ceEEEEeec-CCCCCCCeEEEECCCCCHHHHHHHHHHHhCCCchh-EEEEecccccCCCCCccccCCCCcHHHHhhc
Confidence 899999873 33444455677999999999999999999998876 4444 421 2333457788888854
No 123
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=30.75 E-value=66 Score=18.43 Aligned_cols=36 Identities=14% Similarity=0.193 Sum_probs=25.9
Q ss_pred ceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCC
Q psy7717 44 KKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPS 84 (113)
Q Consensus 44 ~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~ 84 (113)
+.+-++...|+++++..| ++++ +.+-+.||+.+.|.
T Consensus 8 ~~~~~~~~~tv~~ll~~l----~~~~-~~v~vavN~~~v~~ 43 (66)
T 1f0z_A 8 QAMQCAAGQTVHELLEQL----DQRQ-AGAALAINQQIVPR 43 (66)
T ss_dssp CEECCCTTCCHHHHHHHH----TCCC-SSEEEEETTEEECH
T ss_pred EEEEcCCCCcHHHHHHHc----CCCC-CCEEEEECCEECCc
Confidence 345567778999988766 4443 45679999988775
No 124
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=30.20 E-value=45 Score=27.40 Aligned_cols=81 Identities=11% Similarity=0.142 Sum_probs=51.1
Q ss_pred CeeEEEEEec-CCCCCcc-cceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCc---cC-CC-ccchHHHHHHhcCC
Q psy7717 26 VKVPILLRAT-GDAPILT-KKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQS---FA-PS-PDTTIRALYDSFAT 98 (113)
Q Consensus 26 ~kVpVi~e~~-~~~P~L~-k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~---~~-P~-~d~t~~~LY~~~kd 98 (113)
+.|.|-++-. .....|. --...|+.+.+++++...|+++++++++..|=||=.-+ +- .. ++.|+.+.+++-.+
T Consensus 129 ~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~ 208 (530)
T 2ylm_A 129 HDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMD 208 (530)
T ss_dssp TEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCT
T ss_pred CcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhcccC
Confidence 4566655543 2121222 22357999999999999999999999998888874321 10 12 45677666655555
Q ss_pred CCEEEEEE
Q psy7717 99 NGSLVLNY 106 (113)
Q Consensus 99 DGfLyi~Y 106 (113)
+..|+..=
T Consensus 209 GdII~fQ~ 216 (530)
T 2ylm_A 209 GDIIVFQK 216 (530)
T ss_dssp TEEEEEEE
T ss_pred CCEEEEEe
Confidence 55665543
No 125
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=29.76 E-value=1.1e+02 Score=19.35 Aligned_cols=72 Identities=8% Similarity=0.138 Sum_probs=47.8
Q ss_pred CeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCC--CCEEE
Q psy7717 26 VKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFAT--NGSLV 103 (113)
Q Consensus 26 ~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kd--DGfLy 103 (113)
..+.|.|+...+ +...+.|+.+.||++|...|.++.++++++- -|+.+++.+ ..+.++++ |+. +..|+
T Consensus 34 ~~m~I~Vk~~~G----~~~~l~v~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~L-~D~~tL~~----~gI~~gs~I~ 103 (111)
T 3vdz_A 34 LAMQIFVKTLTG----KTITLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQL-EDGRTLSD----YNIQKESTLH 103 (111)
T ss_dssp GCEEEEEECSSS----CEEEEEECTTCBHHHHHHHHHHHHCCCGGGE-EEEETTEEC-CTTSBTTT----TTCCTTCEEE
T ss_pred ccEEEEEEeCCC----CEEEEEeCCCCCHHHHHHHHHHHhCCChHHE-EEEECCEEC-CCCCcHHH----CCCCCCCEEE
Confidence 357777765432 2335679999999999999999999987543 444566653 34556665 343 55677
Q ss_pred EEEc
Q psy7717 104 LNYC 107 (113)
Q Consensus 104 i~Ys 107 (113)
+...
T Consensus 104 l~~r 107 (111)
T 3vdz_A 104 LVLR 107 (111)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 6543
No 126
>3fys_A Protein DEGV; fatty acid-binding, EDD fold, fatty acid-binding protein; HET: PLM; 2.50A {Bacillus subtilis}
Probab=29.67 E-value=1.2e+02 Score=23.13 Aligned_cols=77 Identities=13% Similarity=0.297 Sum_probs=49.9
Q ss_pred ccCCCeeEEEEEecCCCCC----------------cccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCc
Q psy7717 22 AEAKVKVPILLRATGDAPI----------------LTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSP 85 (113)
Q Consensus 22 ~k~p~kVpVi~e~~~~~P~----------------L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~ 85 (113)
++..=||.|+..+.+++|. ++.+-|.=..+.+..+|...+++.=.+ |.. -+|++
T Consensus 31 ~~~~Mki~IvTDSt~dL~~e~~~~~~I~vvPL~v~~~~~~Y~D~~di~~~efy~~m~~~~~~-p~T---------SqPs~ 100 (315)
T 3fys_A 31 GRGSMNIAVVTDSTAYIPKEMREQHQIHMIPLQVVFREETYREEIELDWKSFYEEVKKHNEL-PTT---------SQPPI 100 (315)
T ss_dssp ---CCCEEEEEEGGGCCCHHHHHHHTEEEECCEEECSSCEEEBTTTBCHHHHHHHHHTTTCC-CEE---------ECCCH
T ss_pred CcCCCcEEEEEECCCCCCHHHHHhCCeEEEeEEEEECCEEEECCCCCCHHHHHHHHHhCCCC-ccc---------CCCCH
Confidence 3333479999998877763 233444434577889999998853122 111 24664
Q ss_pred cchHHHHHHhcCC--CCEEEEEEccc
Q psy7717 86 DTTIRALYDSFAT--NGSLVLNYCKT 109 (113)
Q Consensus 86 d~t~~~LY~~~kd--DGfLyi~Ys~~ 109 (113)
..+.++|++... |..|+|+.|+.
T Consensus 101 -~~~~~~fe~l~~~~~~Ii~I~iSS~ 125 (315)
T 3fys_A 101 -GELVALYEELGKSYDAVISIHLSSG 125 (315)
T ss_dssp -HHHHHHHHHHTTTCSEEEEEESCTT
T ss_pred -HHHHHHHHHHHhcCCcEEEEeCCCc
Confidence 567888888876 88999998864
No 127
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=29.35 E-value=99 Score=18.78 Aligned_cols=58 Identities=10% Similarity=0.121 Sum_probs=38.9
Q ss_pred eEEecCCccHHhHHHHHHhh---hCCCCCCeEEEEEcCccCCCccchHHHHHHhcCC--CCEEEEEEcc
Q psy7717 45 KWLVHVDQNVASIISFTKKS---IKMDPSESLFIYVNQSFAPSPDTTIRALYDSFAT--NGSLVLNYCK 108 (113)
Q Consensus 45 KflV~~~~tv~~~~~~lrk~---L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kd--DGfLyi~Ys~ 108 (113)
.+-|+.+.||++|...|..+ -++++++- -|+.+++.+ ..+.++++ |+. +..|++....
T Consensus 14 ~~~v~~~~TV~~LK~~I~~~~~~~gip~~~q-rLi~~Gk~L-~D~~tL~~----ygI~~g~~i~l~~~~ 76 (95)
T 1uel_A 14 KIDIDPEETVKALKEKIESEKGKDAFPVAGQ-KLIYAGKIL-NDDTALKE----YKIDEKNFVVVMVTK 76 (95)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCTTTCCTTTE-EEEETTEEC-CTTSBGGG----GTCCSSSEEEEEESS
T ss_pred EEEECCCCHHHHHHHHHHhhcccCCCChhhE-EEEECCEEC-CCcCcHHH----CCCCCCCEEEEEEeC
Confidence 46789999999999999998 45765543 334466654 44556654 454 5677776543
No 128
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=29.30 E-value=77 Score=19.36 Aligned_cols=33 Identities=12% Similarity=0.288 Sum_probs=16.7
Q ss_pred EEEcCccCCC--ccchHHHHHHhcCC--------CCEEEEEEccc
Q psy7717 75 IYVNQSFAPS--PDTTIRALYDSFAT--------NGSLVLNYCKT 109 (113)
Q Consensus 75 lyVnn~~~P~--~d~t~~~LY~~~kd--------DGfLyi~Ys~~ 109 (113)
|||.| +|. ..+.|.+++..|+. |||=+|.|.+.
T Consensus 18 l~V~n--Lp~~~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~ 60 (108)
T 1x4c_A 18 VVVSG--LPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRK 60 (108)
T ss_dssp EEEES--CCSSCCHHHHHHHHGGGSCEEEEEEETTTEEEEEESSH
T ss_pred EEEeC--CCCCCCHHHHHHHHHhcCCEeEEEEecCCEEEEEECCH
Confidence 45666 232 23345555555543 36666666553
No 129
>2w1t_A Spovt, stage V sporulation protein T; transcription, transcription regulation, repressor, activator, DNA-binding; 2.60A {Bacillus subtilis} PDB: 2w1t_B 2ro5_A
Probab=28.46 E-value=50 Score=23.70 Aligned_cols=21 Identities=14% Similarity=0.469 Sum_probs=18.7
Q ss_pred HHHHhhhCCCCCCeEEEEEcC
Q psy7717 59 SFTKKSIKMDPSESLFIYVNQ 79 (113)
Q Consensus 59 ~~lrk~L~l~~~~sLFlyVnn 79 (113)
+-+|++|++.+++.|.+++.+
T Consensus 20 keiR~~LgI~~GD~l~~~~~~ 40 (178)
T 2w1t_A 20 KEIRRTLRIREGDPLEIFVDR 40 (178)
T ss_dssp HHHHHHTTCCTTCEEEEEECT
T ss_pred HHHHHHcCcCCCCEEEEEEeC
Confidence 568999999999999999973
No 130
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=27.59 E-value=1.2e+02 Score=19.36 Aligned_cols=48 Identities=10% Similarity=0.042 Sum_probs=36.5
Q ss_pred ccceEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHH
Q psy7717 42 TKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRA 91 (113)
Q Consensus 42 ~k~KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~ 91 (113)
++...-|+.+.||++|-.-|..+.++++.+-- |..+++.+ ..+.||++
T Consensus 30 ~~~~lev~~~~TV~~lK~kI~~k~gip~~qQr-LI~~GKiL-~D~~TL~~ 77 (100)
T 1wju_A 30 RKNLLETRLHITGRELRSKIAETFGLQENYIK-IVINKKQL-QLGKTLEE 77 (100)
T ss_dssp SSEEEEEESSSBHHHHHHHHHHHTTCCSTTCE-EEETTEEC-CTTSBHHH
T ss_pred cEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeE-EEeCCeEC-CCCCcHHH
Confidence 44456799999999999999999999876543 34567664 56778765
No 131
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=27.44 E-value=50 Score=21.14 Aligned_cols=33 Identities=21% Similarity=0.408 Sum_probs=19.1
Q ss_pred EEEcCccCCCccchHHHHHHhcCC---------CCEEEEEEccc
Q psy7717 75 IYVNQSFAPSPDTTIRALYDSFAT---------NGSLVLNYCKT 109 (113)
Q Consensus 75 lyVnn~~~P~~d~t~~~LY~~~kd---------DGfLyi~Ys~~ 109 (113)
|||.| +....+.|.+++..|+. .||-+|.|.+.
T Consensus 42 lfVgn--l~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~ 83 (121)
T 2bz2_A 42 LYVYG--EDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKM 83 (121)
T ss_dssp EEEEC--SSCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSH
T ss_pred EEEcC--CCCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCH
Confidence 44556 24455566666666653 36667776553
No 132
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=32.84 E-value=13 Score=21.50 Aligned_cols=45 Identities=11% Similarity=0.061 Sum_probs=30.7
Q ss_pred eEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHH
Q psy7717 45 KWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRA 91 (113)
Q Consensus 45 KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~ 91 (113)
.+-|+.+.|++++...|.++.++++++--.+ .+++.+ ..+.++++
T Consensus 14 ~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~-~~gk~L-~d~~tL~~ 58 (76)
T 3b1l_X 14 PVEVDSDTSILQLKEVVAKQQGVPADQLRVI-FAGKEL-PNHLTVQN 58 (76)
Confidence 3568889999999999999988876643333 355443 34555554
No 133
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=26.52 E-value=1e+02 Score=20.95 Aligned_cols=61 Identities=8% Similarity=0.237 Sum_probs=37.2
Q ss_pred cceEEecC----CccHHhHHHHHHhhhCCCCCCeEE------EEEcCccCCCccchHHHHHHhcCCCCEEEEE
Q psy7717 43 KKKWLVHV----DQNVASIISFTKKSIKMDPSESLF------IYVNQSFAPSPDTTIRALYDSFATNGSLVLN 105 (113)
Q Consensus 43 k~KflV~~----~~tv~~~~~~lrk~L~l~~~~sLF------lyVnn~~~P~~d~t~~~LY~~~kdDGfLyi~ 105 (113)
+-++.|+. ..|.++|+..||.+++...+-|++ +..+--|-=..+.++.+| ..+.+.||-|+
T Consensus 7 Rgvl~v~~~dl~~~TL~dLV~~l~~~~gy~~eiSV~~~~~~rLLyD~DfDDnl~k~L~dL--gv~~gsfLtv~ 77 (127)
T 3onh_A 7 RGVIKLSSDCLNKMKLSDFVVLIREKYSYPQDISLLDASNQRLLFDYDFEDLNDRTLSEI--NLGNGSIILFS 77 (127)
T ss_dssp EEEEEECHHHHHHCBHHHHHHHHHHHHTCCSSEEEEETTTTEEEEETTBCTTTTSBTTTT--TCCTTCEEEEE
T ss_pred EEEEEeCcccccccCHHHHHHHHHHhcCCCCcEEEEecCCCCeEeCCCccccccCcHHHc--CcCCCcEEEEE
Confidence 44566664 469999999999999987544444 222212223345666666 45556666654
No 134
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=25.89 E-value=1.3e+02 Score=18.91 Aligned_cols=71 Identities=14% Similarity=0.218 Sum_probs=44.9
Q ss_pred eEEEEEecCCCCCcccceEEec-CCccHHhHHHHHHhhhCCCCC-CeEEEEEcCc-----------cC---CCccchHHH
Q psy7717 28 VPILLRATGDAPILTKKKWLVH-VDQNVASIISFTKKSIKMDPS-ESLFIYVNQS-----------FA---PSPDTTIRA 91 (113)
Q Consensus 28 VpVi~e~~~~~P~L~k~KflV~-~~~tv~~~~~~lrk~L~l~~~-~sLFlyVnn~-----------~~---P~~d~t~~~ 91 (113)
+.|.|+...+ +..+.|. .+.||++|...|..+.++++. +.|++ ++. .+ ...+.+++
T Consensus 8 M~irvrs~~G-----~~~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~--~~~~~~~k~~~~~~~l~~~l~d~~tL~- 79 (107)
T 1wf9_A 8 TMLRVRSRDG-----LERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLST--NRNLLLAKSPSDFLAFTDMADPNLRIS- 79 (107)
T ss_dssp EEEEEECSSC-----EEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBS--SGGGGTCCSHHHHTTCCSSCCTTCBGG-
T ss_pred EEEEEECCCC-----CEEEEECCCCCcHHHHHHHHHHHhCcCcccCEEEE--CCccccccCccccccccccCCCCCCHH-
Confidence 5567764322 2235688 999999999999999998755 44443 332 11 23344554
Q ss_pred HHHhcCC--CCEEEEEEccc
Q psy7717 92 LYDSFAT--NGSLVLNYCKT 109 (113)
Q Consensus 92 LY~~~kd--DGfLyi~Ys~~ 109 (113)
.|+. +..|||.|..+
T Consensus 80 ---~~gi~~G~~L~l~~~~~ 96 (107)
T 1wf9_A 80 ---SLNLAHGSMVYLAYEGE 96 (107)
T ss_dssp ---GTCCCTTCEEECCCSSC
T ss_pred ---HCCCCCCCEEEEEeCCC
Confidence 3454 56888888754
No 135
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=24.90 E-value=59 Score=20.26 Aligned_cols=22 Identities=9% Similarity=0.477 Sum_probs=11.3
Q ss_pred EEEcCccCCC--ccchHHHHHHhcCC
Q psy7717 75 IYVNQSFAPS--PDTTIRALYDSFAT 98 (113)
Q Consensus 75 lyVnn~~~P~--~d~t~~~LY~~~kd 98 (113)
|||.| + |. .++.|.+++..|+.
T Consensus 8 lfV~n-L-p~~~te~~L~~~F~~~G~ 31 (115)
T 4f25_A 8 IFIKN-L-DKSIDNKALYDTFSAFGN 31 (115)
T ss_dssp EEEES-C-CTTCCHHHHHHHHGGGSC
T ss_pred EEECC-C-CCCCCHHHHHHHHhccCC
Confidence 56777 2 33 33345555555543
No 136
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=24.69 E-value=66 Score=20.13 Aligned_cols=39 Identities=8% Similarity=0.118 Sum_probs=27.0
Q ss_pred ccceEEecCC-ccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCc
Q psy7717 42 TKKKWLVHVD-QNVASIISFTKKSIKMDPSESLFIYVNQSFAPSP 85 (113)
Q Consensus 42 ~k~KflV~~~-~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~ 85 (113)
..+.+.++.. .|+++++..| ++++. .+-+.||+.++|..
T Consensus 26 NGe~~el~~~~~Tv~dLL~~L----~~~~~-~vaVavNg~iV~~~ 65 (87)
T 1tyg_B 26 NGKDVKWKKDTGTIQDLLASY----QLENK-IVIVERNKEIIGKE 65 (87)
T ss_dssp TTEEECCSSSCCBHHHHHHHT----TCTTS-CCEEEETTEEECGG
T ss_pred CCEEEECCCCCCcHHHHHHHh----CCCCC-CEEEEECCEECChh
Confidence 3344556776 8999987755 55543 55688999988764
No 137
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=24.65 E-value=1.1e+02 Score=19.37 Aligned_cols=37 Identities=16% Similarity=0.333 Sum_probs=25.8
Q ss_pred eEEEEEcCccCCC-ccchHHHHHHhcCC---------CCEEEEEEccc
Q psy7717 72 SLFIYVNQSFAPS-PDTTIRALYDSFAT---------NGSLVLNYCKT 109 (113)
Q Consensus 72 sLFlyVnn~~~P~-~d~t~~~LY~~~kd---------DGfLyi~Ys~~ 109 (113)
+--|||.| +.+. ..+++.+|+.+|+. -||=.+.|++.
T Consensus 7 ~~wL~VgN-L~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~ 53 (89)
T 2wbr_A 7 SSWLLLKN-LTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTR 53 (89)
T ss_dssp CCEEEEEC-CCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSH
T ss_pred cceEEEeC-CCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCH
Confidence 44567888 4455 45689999999975 56666777654
No 138
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=24.56 E-value=73 Score=19.85 Aligned_cols=34 Identities=12% Similarity=0.328 Sum_probs=21.8
Q ss_pred EEEcCccCCC--ccchHHHHHHhcCC--------CCEEEEEEcccc
Q psy7717 75 IYVNQSFAPS--PDTTIRALYDSFAT--------NGSLVLNYCKTQ 110 (113)
Q Consensus 75 lyVnn~~~P~--~d~t~~~LY~~~kd--------DGfLyi~Ys~~~ 110 (113)
|||.| + |. ..+.|.+++..|+. |||-+|.|.+.+
T Consensus 19 l~V~n-L-p~~~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~ 62 (115)
T 3beg_B 19 VVVSG-L-PPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKE 62 (115)
T ss_dssp EEEEE-C-CSSCCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHH
T ss_pred EEEeC-C-CCCCCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHH
Confidence 45666 2 32 45567777777764 388888887643
No 139
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=24.43 E-value=1.3e+02 Score=18.65 Aligned_cols=67 Identities=6% Similarity=-0.011 Sum_probs=43.8
Q ss_pred cCCCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCC-eEEEEEcCcc---CCCccchHHH
Q psy7717 23 EAKVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSE-SLFIYVNQSF---APSPDTTIRA 91 (113)
Q Consensus 23 k~p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~-sLFlyVnn~~---~P~~d~t~~~ 91 (113)
..+.-|.|.|.....- -+.....|+.+.||++|-.-|..+.++++++ .|++.-++++ +-..+.++++
T Consensus 11 ~~~~~v~l~It~s~~~--~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~ 81 (95)
T 2kjr_A 11 GKSDFIKVNVSNSHND--AVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGY 81 (95)
T ss_dssp CCCCEEEEEEEESSCS--CEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHH
T ss_pred CCCCeEEEEEEECCCC--ceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhH
Confidence 3467788888753211 1244567999999999999999999999775 5554432332 2234556654
No 140
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
Probab=23.61 E-value=81 Score=28.25 Aligned_cols=50 Identities=18% Similarity=0.336 Sum_probs=35.8
Q ss_pred eEEecCCccHHhHHHHHHhhhCCCCC-----CeEEEEEcCccCC------CccchHHHHHHhcC
Q psy7717 45 KWLVHVDQNVASIISFTKKSIKMDPS-----ESLFIYVNQSFAP------SPDTTIRALYDSFA 97 (113)
Q Consensus 45 KflV~~~~tv~~~~~~lrk~L~l~~~-----~sLFlyVnn~~~P------~~d~t~~~LY~~~k 97 (113)
+|.|+.+.|+.+|+..+++++++... .+ -||-. +.| .++.+|.+|++.-.
T Consensus 921 ~~~v~~~~Tl~~li~~~~~~~~~~~~~i~~~~~-~ly~~--~~~~~~~~~~l~~~l~~l~~~~~ 981 (1015)
T 3cmm_A 921 RFDIKGDIKLSDLIEHFEKDEGLEITMLSYGVS-LLYAS--FFPPKKLKERLNLPITQLVKLVT 981 (1015)
T ss_dssp EEEEESCCBHHHHHHHHHHTTCCEEEEEEETTE-EEEET--TCCHHHHHHHTTSBHHHHHHHHS
T ss_pred EEEECCCCcHHHHHHHHHHHhCCcceeeccCCc-EEEec--CCCchhhHHhccCCHHHHHHhhc
Confidence 56788899999999999999886422 11 13332 334 46788999998854
No 141
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=23.44 E-value=1.3e+02 Score=18.00 Aligned_cols=56 Identities=14% Similarity=0.095 Sum_probs=37.5
Q ss_pred eEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCC--CCEEEEEE
Q psy7717 45 KWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFAT--NGSLVLNY 106 (113)
Q Consensus 45 KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kd--DGfLyi~Y 106 (113)
.+-|+.+.||++|...|..+.++++++- -|+.+++.+ ..+.++++ |+. +..|++..
T Consensus 25 ~l~v~~~~TV~~LK~~I~~~~gip~~~q-rL~~~Gk~L-~D~~tL~~----~gi~~g~~l~l~~ 82 (85)
T 2kd0_A 25 PLSVSPDCTVKDLKSQLQPITNVLPRGQ-KLIFKGKVL-VETSTLKQ----SDVGSGAKLMLMA 82 (85)
T ss_dssp EEEECTTSBHHHHHHHHHHHHCCCTTTC-EEEETTEEC-CTTCBTTT----TTCCTTEEEEEEC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChHHE-EEEECCeEC-CCcCCHHH----CCCCCCCEEEEEE
Confidence 3568999999999999999999886533 233466654 34556654 344 44566543
No 142
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=23.23 E-value=84 Score=19.50 Aligned_cols=36 Identities=8% Similarity=0.123 Sum_probs=23.9
Q ss_pred EEec--CCccHHhHHHHHHhhhC-CC-------CCC----eEEEEEcCcc
Q psy7717 46 WLVH--VDQNVASIISFTKKSIK-MD-------PSE----SLFIYVNQSF 81 (113)
Q Consensus 46 flV~--~~~tv~~~~~~lrk~L~-l~-------~~~----sLFlyVnn~~ 81 (113)
.-++ ...|+++++..|..+.. +. .+. .+-++||+..
T Consensus 24 ~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~ 73 (99)
T 2qjl_A 24 IKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTD 73 (99)
T ss_dssp EEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEE
T ss_pred EecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEE
Confidence 3456 66899999999998762 11 111 2458899863
No 143
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=23.20 E-value=1.6e+02 Score=18.98 Aligned_cols=48 Identities=0% Similarity=-0.053 Sum_probs=35.2
Q ss_pred CeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCCC-eEEEE
Q psy7717 26 VKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSE-SLFIY 76 (113)
Q Consensus 26 ~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~~-sLFly 76 (113)
..|.|.|...+. + ......|+.+.||++|-.-|..+.++++++ .|++.
T Consensus 5 ~~v~l~V~~~~~-~--~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~ 53 (122)
T 1t0y_A 5 EVYDLEITTNAT-D--FPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLF 53 (122)
T ss_dssp CEEEEEEEESSC-C--SCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEE
T ss_pred CEEEEEEEECCC-C--ccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEe
Confidence 357787776432 2 234467999999999999999999998774 45543
No 144
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=22.77 E-value=1e+02 Score=21.48 Aligned_cols=31 Identities=26% Similarity=0.397 Sum_probs=21.5
Q ss_pred CCCCeEEEEEcCccCCCccchHHHHHHhcCC
Q psy7717 68 DPSESLFIYVNQSFAPSPDTTIRALYDSFAT 98 (113)
Q Consensus 68 ~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kd 98 (113)
.++..+.|||.|---+-..+.|.+++..|+.
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~ 72 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGT 72 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHHSC
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhcCC
Confidence 4567789999983223355677888888864
No 145
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=22.54 E-value=1.2e+02 Score=17.98 Aligned_cols=40 Identities=15% Similarity=0.132 Sum_probs=28.2
Q ss_pred ceEEecCCccHHhHHHHHHhhhC-------CCCC---CeEEEEEcCccCC
Q psy7717 44 KKWLVHVDQNVASIISFTKKSIK-------MDPS---ESLFIYVNQSFAP 83 (113)
Q Consensus 44 ~KflV~~~~tv~~~~~~lrk~L~-------l~~~---~sLFlyVnn~~~P 83 (113)
....++...|+++++..|..+.. ++.+ ..+.+.||+.+.+
T Consensus 17 ~~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~ 66 (90)
T 2g1e_A 17 KEETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNIT 66 (90)
T ss_dssp SEEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGG
T ss_pred CEEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEcc
Confidence 34567777899999999987741 1111 4577999998765
No 146
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=22.08 E-value=71 Score=19.12 Aligned_cols=56 Identities=11% Similarity=0.134 Sum_probs=35.2
Q ss_pred ecCCccHHhHHHHHHhhhCCCCC-CeEEEEEc-CccCC-C-ccchHHHHHHhcCC--CCEEEEEEcc
Q psy7717 48 VHVDQNVASIISFTKKSIKMDPS-ESLFIYVN-QSFAP-S-PDTTIRALYDSFAT--NGSLVLNYCK 108 (113)
Q Consensus 48 V~~~~tv~~~~~~lrk~L~l~~~-~sLFlyVn-n~~~P-~-~d~t~~~LY~~~kd--DGfLyi~Ys~ 108 (113)
++.+.||+++...|..+.++.++ +.| +|-. .+.+. . .+.+++++ +- +..|++....
T Consensus 17 l~~~~Tv~~Lk~~I~~~~gi~~~~qrL-~~~~p~k~l~l~~~~~tL~~~----gl~~g~~l~v~~~~ 78 (86)
T 2kzr_A 17 LSSRTRLRELQGQIAAITGIAPGSQRI-LVGYPPECLDLSDRDITLGDL----PIQSGDMLIVEEDQ 78 (86)
T ss_dssp CCTTCBHHHHHHHHHHHTCCCTTTCCC-EESSCCCCCCCCCSSCBTTTS----SCCTTCEEECCCCS
T ss_pred cCCCCCHHHHHHHHHHHhCCCccceEE-EeCCCCcccccCCCCCCHHHc----CCCCCCEEEEEeCC
Confidence 78899999999999999998754 344 3321 12221 2 35566543 43 5577776553
No 147
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=21.79 E-value=1.1e+02 Score=19.52 Aligned_cols=57 Identities=9% Similarity=0.123 Sum_probs=38.4
Q ss_pred eEEecCCccHHhHHHHHHhhhCCCCCCeEEEEEcCccCCCccchHHHHHHhcCC--CCEEEEEEc
Q psy7717 45 KWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPDTTIRALYDSFAT--NGSLVLNYC 107 (113)
Q Consensus 45 KflV~~~~tv~~~~~~lrk~L~l~~~~sLFlyVnn~~~P~~d~t~~~LY~~~kd--DGfLyi~Ys 107 (113)
.+.|+.+.|++++...|..+.++++++-- |+.++..+ ..+.++++ |+. +..|++...
T Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~-L~~~g~~L-~d~~tL~~----~~i~~~~~l~l~~~ 72 (152)
T 3b08_A 14 TLEVEPSDTIENVKAKIQDKEGIPPDQQR-LIFAGKQL-EDGRTLSD----YNIQKESTLHLVLR 72 (152)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGEE-EEETTEEC-CTTSBTGG----GTCCTTCEEEEEEC
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChHHeE-EEECCeEC-cCcccHHH----hccCCCCeeEEEee
Confidence 46789999999999999999999876433 33455543 34556544 343 556666543
No 148
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=21.74 E-value=2.1e+02 Score=19.88 Aligned_cols=41 Identities=10% Similarity=0.115 Sum_probs=30.2
Q ss_pred EEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhhCCCCC
Q psy7717 29 PILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPS 70 (113)
Q Consensus 29 pVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L~l~~~ 70 (113)
.+.|.-.+.-|.+ -+.+.||++.|+.+|-.+|+..++....
T Consensus 10 ~lrV~L~~~~p~i-WRri~Vp~~~TL~~LH~vIq~afgw~~~ 50 (188)
T 2i1s_A 10 HLKLSIKGITPQI-WRRIQVPENYTFLDLHKAIQAVMDWEDY 50 (188)
T ss_dssp EEEEEETTCSSCE-EEEEEEETTCBHHHHHHHHHHHTTCCCC
T ss_pred EEEEEECCCCCCe-EEEEEECCCCCHHHHHHHHHHHhCCCCC
Confidence 3334333444544 3668999999999999999999998753
No 149
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=20.38 E-value=87 Score=17.42 Aligned_cols=10 Identities=10% Similarity=0.132 Sum_probs=6.4
Q ss_pred CEEEEEEccc
Q psy7717 100 GSLVLNYCKT 109 (113)
Q Consensus 100 GfLyi~Ys~~ 109 (113)
|+=+|.|.+.
T Consensus 42 g~afV~f~~~ 51 (75)
T 2mss_A 42 GFGFVTFESE 51 (75)
T ss_dssp BEEEEECSCH
T ss_pred cEEEEEECCH
Confidence 5667776654
No 150
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=20.32 E-value=1.9e+02 Score=18.85 Aligned_cols=62 Identities=13% Similarity=0.148 Sum_probs=41.5
Q ss_pred CCeeEEEEEecCCCCCcccceEEecCCccHHhHHHHHHhhh------CCC-CCCeEEEEEcCccCCCccchHHH
Q psy7717 25 KVKVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSI------KMD-PSESLFIYVNQSFAPSPDTTIRA 91 (113)
Q Consensus 25 p~kVpVi~e~~~~~P~L~k~KflV~~~~tv~~~~~~lrk~L------~l~-~~~sLFlyVnn~~~P~~d~t~~~ 91 (113)
++.+.|.|+...+ +...+-|..+.||++|-..|..+. ++. +-+.+=|...++++ ..+.|+++
T Consensus 14 ~~~m~I~vKtl~G----~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~L-eD~~TL~~ 82 (116)
T 1wgh_A 14 ADMINLRLILVSG----KTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFL-HGNVTLGA 82 (116)
T ss_dssp SSSEEEEEECSSS----CEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEE-CSSCBTTT
T ss_pred CCeEEEEEEeCCC----CEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCC-CCCCcHHH
Confidence 3557777765432 455678999999999999999843 331 23445566677664 45667765
No 151
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=20.18 E-value=1.5e+02 Score=18.68 Aligned_cols=43 Identities=14% Similarity=0.247 Sum_probs=23.2
Q ss_pred hCCCCCCeEEEEEcCccCCC--ccchHHHHHHhcC-C-----------CCEEEEEEccc
Q psy7717 65 IKMDPSESLFIYVNQSFAPS--PDTTIRALYDSFA-T-----------NGSLVLNYCKT 109 (113)
Q Consensus 65 L~l~~~~sLFlyVnn~~~P~--~d~t~~~LY~~~k-d-----------DGfLyi~Ys~~ 109 (113)
+.-.+...-=|||.| + |. ..+.|.+++..|+ . .||=+|.|.+.
T Consensus 21 ~~~~p~~~~~l~Vgn-L-p~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~ 77 (111)
T 2jvr_A 21 MSKLPAKRYRITMKN-L-PEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSE 77 (111)
T ss_dssp ----CCCCEEEEEEC-S-SCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSH
T ss_pred cCCCCCCCCEEEEEC-C-CCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCH
Confidence 333444455667777 2 32 3456777777776 2 35666666553
Done!