RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7717
         (113 letters)



>d1wz3a1 d.15.1.7 (A:10-93) Autophagy-related protein 12b (APG12b)
           {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 84

 Score =  120 bits (303), Expect = 7e-38
 Identities = 36/86 (41%), Positives = 56/86 (65%), Gaps = 3/86 (3%)

Query: 27  KVPILLRATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPSPD 86
           K+ + LRATG APIL + K+ V      A++I F ++ +  D   SLF+YVN +F+P+PD
Sbjct: 2   KIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLHSD---SLFVYVNSAFSPNPD 58

Query: 87  TTIRALYDSFATNGSLVLNYCKTQAW 112
            ++  LY++F  +G LV+NY  + AW
Sbjct: 59  ESVIDLYNNFGFDGKLVVNYACSMAW 84


>d2zjda1 d.15.1.3 (A:2-120) Microtubule-associated proteins 1A/1B
           light chain 3B {Human (Homo sapiens) [TaxId: 9606]}
          Length = 119

 Score = 78.7 bits (194), Expect = 5e-21
 Identities = 22/91 (24%), Positives = 48/91 (52%), Gaps = 4/91 (4%)

Query: 27  KVPILL---RATGDAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAP 83
           K+P+++   +     P+L K K+LV    N++ +I   ++ ++++ +++ F+ VN     
Sbjct: 29  KIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMV 88

Query: 84  SPDTTIRALYDSFAT-NGSLVLNYCKTQAWG 113
           S  T I  +Y+S    +G L + Y   + +G
Sbjct: 89  SVSTPISEVYESEKDEDGFLYMVYASQETFG 119


>d3d32a1 d.15.1.3 (A:1-118) GABA(A) receptor associated protein
           GABARAP {Human (Homo sapiens) [TaxId: 9606]}
          Length = 118

 Score = 74.0 bits (182), Expect = 3e-19
 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 4/90 (4%)

Query: 27  KVPILLRATGDA--PILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPS 84
           +VP+++     A    L KKK+LV  D  V       +K I +   ++LF +VN    P 
Sbjct: 30  RVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVI-PP 88

Query: 85  PDTTIRALYDSFATN-GSLVLNYCKTQAWG 113
              T+  LY         L + Y     +G
Sbjct: 89  TSATMGQLYQEHHEEDFFLYIAYSDESVYG 118


>d1eo6a_ d.15.1.3 (A:) Golgi-associated ATPase enhancer of 16 kD,
           Gate-16 {Cow (Bos taurus) [TaxId: 9913]}
          Length = 116

 Score = 52.4 bits (126), Expect = 1e-10
 Identities = 22/90 (24%), Positives = 47/90 (52%), Gaps = 4/90 (4%)

Query: 27  KVPILL-RATG-DAPILTKKKWLVHVDQNVASIISFTKKSIKMDPSESLFIYVNQSFAPS 84
           +VP+++ + +G     + K+K+LV  D  VA  +   +K I++   +++F++V+++  P 
Sbjct: 28  RVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTV-PQ 86

Query: 85  PDTTIRALYDSFATN-GSLVLNYCKTQAWG 113
              T+  LY+      G L + Y     +G
Sbjct: 87  SSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116


>d1hl9a2 c.1.8.11 (A:7-356) Putative alpha-L-fucosidase, catalytic
           domain {Thermotoga maritima [TaxId: 2336]}
          Length = 350

 Score = 25.5 bits (55), Expect = 1.8
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 84  SPDTTIRALYDSFATNGSLVLN 105
           S +  +  L D  +  G+L+LN
Sbjct: 297 SVEQLVYTLVDVVSKGGNLLLN 318


>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 62

 Score = 22.5 bits (48), Expect = 7.9
 Identities = 4/13 (30%), Positives = 7/13 (53%)

Query: 82 APSPDTTIRALYD 94
          +P  D  + AL+ 
Sbjct: 2  SPLQDNLVIALHS 14


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.128    0.368 

Gapped
Lambda     K      H
   0.267   0.0655    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 384,872
Number of extensions: 14702
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 9
Length of query: 113
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 42
Effective length of database: 1,432,766
Effective search space: 60176172
Effective search space used: 60176172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.0 bits)