BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7718
(184 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NIJ|A Chain A, Yjia Protein
pdb|4IXM|A Chain A, Crystal Structure Of Zn(ii)-bound Yjia Gtpase From E. Coli
pdb|4IXM|B Chain B, Crystal Structure Of Zn(ii)-bound Yjia Gtpase From E. Coli
Length = 318
Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/142 (44%), Positives = 86/142 (60%), Gaps = 13/142 (9%)
Query: 17 LQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDN--GNL 74
+ P+ VT++TG+LGAGKTTLL +IL EQH KIAVI NEFGE VSV D G+
Sbjct: 1 MNPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGE-------VSVDDQLIGDR 53
Query: 75 YEEWLELKNGCLCCSVKDNGVKAIENLMLKRGK----FDYILLETTGLADPGPIAKVFWL 130
+ L NGC+CCS + A+ +L+ K FD +++E TG+ADPGPI + F+
Sbjct: 54 ATQIKTLTNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFS 113
Query: 131 DKELGSDIYLDGIVTVVDCKHT 152
+ L LDG++ +VD H
Sbjct: 114 HEVLCQRYLLDGVIALVDAVHA 135
>pdb|4IXN|A Chain A, Crystal Structure Of Zn(ii)-bound E37a,c66a,c67a Triple
Mutant Yjia Gtpase
pdb|4IXN|B Chain B, Crystal Structure Of Zn(ii)-bound E37a,c66a,c67a Triple
Mutant Yjia Gtpase
Length = 318
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 84/142 (59%), Gaps = 13/142 (9%)
Query: 17 LQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDN--GNL 74
+ P+ VT++TG+LGAGKTTLL +IL EQH KIAVI NEFGE VSV D G+
Sbjct: 1 MNPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIANEFGE-------VSVDDQLIGDR 53
Query: 75 YEEWLELKNGCLCCSVKDNGVKAIENLMLKRGK----FDYILLETTGLADPGPIAKVFWL 130
+ L NGC+ S + A+ +L+ K FD +++E TG+ADPGPI + F+
Sbjct: 54 ATQIKTLTNGCIAASRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFS 113
Query: 131 DKELGSDIYLDGIVTVVDCKHT 152
+ L LDG++ +VD H
Sbjct: 114 HEVLCQRYLLDGVIALVDAVHA 135
>pdb|2J28|9 Chain 9, Model Of E. Coli Srp Bound To 70s Rncs
Length = 430
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 18 QPVPVTIITGYLGAGKTT---LLNYILTEQHDKKIAVI 52
QP V ++ G GAGKTT L L E+H KK+ V+
Sbjct: 97 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVV 134
>pdb|2XXA|A Chain A, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
pdb|2XXA|C Chain C, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
Length = 433
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 18 QPVPVTIITGYLGAGKTT---LLNYILTEQHDKKIAVI 52
QP V ++ G GAGKTT L L E+H KK+ V+
Sbjct: 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVV 135
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 30.8 bits (68), Expect = 0.46, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 17 LQPVPVTII-TGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSA-MEKSVSVGDNGNL 74
L+P P+ + GY G ++YI+T+Q + A + ++ E A M + +GD+ N+
Sbjct: 335 LRPAPIQAMWLGYPGTSGALFMDYIITDQ-ETSPAEVAEQYSEKLAYMPHTFFIGDHANM 393
Query: 75 Y 75
+
Sbjct: 394 F 394
>pdb|3VAA|A Chain A, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
pdb|3VAA|B Chain B, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
pdb|3VAA|C Chain C, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
Length = 199
Score = 29.6 bits (65), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 14/54 (25%)
Query: 24 IITGYLGAGKTTL--------------LNYILTEQHDKKIAVILNEFGEGSAME 63
+TGY+GAGKTTL L++ + E+ K + + E GE E
Sbjct: 29 FLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFHKTVGELFTERGEAGFRE 82
>pdb|3NTX|A Chain A, Crystal Structure Of L-Asparaginase I From Yersinia Pestis
pdb|3NTX|B Chain B, Crystal Structure Of L-Asparaginase I From Yersinia Pestis
Length = 341
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 12 LVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDN 71
L+ + P P+ ++T Y G + N++L A+IL +G G+A +K+ + +
Sbjct: 205 LIVHRITPQPIGVVTIYPGISGAVVRNFLL----QPVKALILRSYGVGNAPQKAELLDEL 260
Query: 72 GNLYEEWLELKNGCLCCSVKDN-GVKAIENLMLKRG 106
N + + + N C S N G A N + + G
Sbjct: 261 KNASDRGIVVVNLTQCISGSVNXGGYATGNALAQAG 296
>pdb|3LS2|A Chain A, Crystal Structure Of An S-Formylglutathione Hydrolase From
Pseudoalteromonas Haloplanktis Tac125
pdb|3LS2|B Chain B, Crystal Structure Of An S-Formylglutathione Hydrolase From
Pseudoalteromonas Haloplanktis Tac125
pdb|3LS2|C Chain C, Crystal Structure Of An S-Formylglutathione Hydrolase From
Pseudoalteromonas Haloplanktis Tac125
pdb|3LS2|D Chain D, Crystal Structure Of An S-Formylglutathione Hydrolase From
Pseudoalteromonas Haloplanktis Tac125
Length = 280
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 19 PVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEW 78
P V TGYLGA KTT Y + ++ + + + + VS GD N +E
Sbjct: 180 PWGVKAFTGYLGADKTTWAQYDSCK--------LMAKAEQSNYLPMLVSQGDADNFLDEQ 231
Query: 79 LELKNGCLCCSVKD 92
L+ +N KD
Sbjct: 232 LKPQNLVAVAKQKD 245
>pdb|4EHX|A Chain A, Crystal Structure Of Lpxk From Aquifex Aeolicus At 1.9
Angstrom Resolution
pdb|4EHY|A Chain A, Crystal Structure Of Lpxk From Aquifex Aeolicus In
Complex With AdpMG2+ AT 2.2 ANGSTROM RESOLUTION
Length = 315
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 19 PVPVTIITGYL---GAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLY 75
PVPV I G L G+GKT+ + Y+ DK++ ++ + S + ++ V + GNL
Sbjct: 35 PVPV-ISVGNLSVGGSGKTSFVMYLADLLKDKRVCILSRGYKRKS--KGTLIVSEYGNLK 91
Query: 76 EEWLE 80
W E
Sbjct: 92 VSWEE 96
>pdb|4EHW|A Chain A, Crystal Structure Of Lpxk From Aquifex Aeolicus At 2.3
Angstrom Resolution
Length = 317
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 19 PVPVTIITGYL---GAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLY 75
PVPV I G L G+GKT+ + Y+ DK++ ++ + S + ++ V + GNL
Sbjct: 37 PVPV-ISVGNLSVGGSGKTSFVMYLADLLKDKRVCILSRGYKRKS--KGTLIVSEYGNLK 93
Query: 76 EEWLE 80
W E
Sbjct: 94 VSWEE 98
>pdb|3MFK|A Chain A, Ets1 Complex With Stromelysin-1 Promoter Dna
pdb|3MFK|B Chain B, Ets1 Complex With Stromelysin-1 Promoter Dna
Length = 162
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 20 VPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWL 79
+P + GY G+G L ++L DK ++ G+G + + D + W
Sbjct: 42 IPAAALAGYTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFK----LSDPDEVARRWG 97
Query: 80 ELKN 83
+ KN
Sbjct: 98 KRKN 101
>pdb|1MDM|B Chain B, Inhibited Fragment Of Ets-1 And Paired Domain Of Pax5
Bound To Dna
Length = 161
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 20 VPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWL 79
+P + GY G+G L ++L DK ++ G+G + + D + W
Sbjct: 42 IPAAALAGYTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFK----LSDPDEVARRWG 97
Query: 80 ELKN 83
+ KN
Sbjct: 98 KRKN 101
>pdb|1MD0|A Chain A, Crystal Structure Of An Inhibited Fragment Of Ets-1
pdb|1MD0|B Chain B, Crystal Structure Of An Inhibited Fragment Of Ets-1
Length = 141
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 20 VPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWL 79
+P + GY G+G L ++L DK ++ G+G + + D + W
Sbjct: 22 IPAAALAGYTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFK----LSDPDEVARRWG 77
Query: 80 ELKN 83
+ KN
Sbjct: 78 KRKN 81
>pdb|3RI4|A Chain A, Ets1 Cooperative Binding To Widely Separated Sites On
Promoter Dna
pdb|3RI4|D Chain D, Ets1 Cooperative Binding To Widely Separated Sites On
Promoter Dna
Length = 163
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 20 VPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWL 79
+P + GY G+G L ++L DK ++ G+G + + D + W
Sbjct: 43 IPAAALAGYTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFK----LSDPDEVARRWG 98
Query: 80 ELKN 83
+ KN
Sbjct: 99 KRKN 102
>pdb|2A5H|A Chain A, 2.1 Angstrom X-Ray Crystal Structure Of
Lysine-2,3-Aminomutase From Clostridium Subterminale
Sb4, With Michaelis Analog (L-Alpha-Lysine External
Aldimine Form Of Pyridoxal-5'-Phosphate).
pdb|2A5H|B Chain B, 2.1 Angstrom X-Ray Crystal Structure Of
Lysine-2,3-Aminomutase From Clostridium Subterminale
Sb4, With Michaelis Analog (L-Alpha-Lysine External
Aldimine Form Of Pyridoxal-5'-Phosphate).
pdb|2A5H|C Chain C, 2.1 Angstrom X-Ray Crystal Structure Of
Lysine-2,3-Aminomutase From Clostridium Subterminale
Sb4, With Michaelis Analog (L-Alpha-Lysine External
Aldimine Form Of Pyridoxal-5'-Phosphate).
pdb|2A5H|D Chain D, 2.1 Angstrom X-Ray Crystal Structure Of
Lysine-2,3-Aminomutase From Clostridium Subterminale
Sb4, With Michaelis Analog (L-Alpha-Lysine External
Aldimine Form Of Pyridoxal-5'-Phosphate)
Length = 416
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 16/69 (23%)
Query: 20 VPVTIITGYLGAGKTTLL-NYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEW 78
VP ++ G GKT + NY++++ HDK VIL F EG Y E
Sbjct: 324 VPTFVVDAPGGGGKTPVXPNYVISQSHDK---VILRNF-EGVIT-----------TYSEP 368
Query: 79 LELKNGCLC 87
+ GC C
Sbjct: 369 INYTPGCNC 377
>pdb|1GVJ|A Chain A, Ets-1 Dna Binding And Autoinhibitory Domains
pdb|1GVJ|B Chain B, Ets-1 Dna Binding And Autoinhibitory Domains
Length = 146
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 20 VPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWL 79
+P + GY G+G L ++L DK ++ G+G + + D + W
Sbjct: 26 IPAAALAGYTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFK----LSDPDEVARRWG 81
Query: 80 ELKN 83
+ KN
Sbjct: 82 KRKN 85
>pdb|2OAJ|A Chain A, Crystal Structure Of Sro7 From S. Cerevisiae
Length = 902
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 106 GKFDYILLETTGLADPGPIAKVFWLDKELGS 136
GKFD L++ T + GPI K+ KE S
Sbjct: 665 GKFDVQLMDITNVTSKGPIHKIDAFSKETKS 695
>pdb|1R36|A Chain A, Nmr-Based Structure Of Autoinhibited Murine Ets-1
Deltan301
Length = 140
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 20 VPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWL 79
+P + GY G+G L ++L DK ++ G+G + + D + W
Sbjct: 21 IPAAALAGYTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFK----LSDPDEVARRWG 76
Query: 80 ELKN 83
+ KN
Sbjct: 77 KRKN 80
>pdb|3QFM|A Chain A, Crystal Structure Of Streptococcal Asymmetric Ap4a
Hydrolase And Phosphodiesterase Spr1479SAPH
pdb|3QFM|B Chain B, Crystal Structure Of Streptococcal Asymmetric Ap4a
Hydrolase And Phosphodiesterase Spr1479SAPH
pdb|3QFN|A Chain A, Crystal Structure Of Streptococcal Asymmetric Ap4a
Hydrolase And Phosphodiesterase Spr1479SAPH IN COMPLEX
WITH INORGANIC PHOSPHATE
pdb|3QFN|B Chain B, Crystal Structure Of Streptococcal Asymmetric Ap4a
Hydrolase And Phosphodiesterase Spr1479SAPH IN COMPLEX
WITH INORGANIC PHOSPHATE
pdb|3QFO|A Chain A, Crystal Structure Of Streptococcal Asymmetric Ap4a
Hydrolase And Phosphodiesterase Spr1479SAPH IM COMPLEX
WITH AMP
pdb|3QFO|B Chain B, Crystal Structure Of Streptococcal Asymmetric Ap4a
Hydrolase And Phosphodiesterase Spr1479SAPH IM COMPLEX
WITH AMP
Length = 270
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 118 LADPGPIAKVFWLDKELGSDIYLDGIVTVVDCKHTIDVSF 157
+ +PG I + F+LD +L D+ ++ D K +D+ F
Sbjct: 187 IVNPGSIGQPFFLDAQLRKDLRAQYMILEFDDKGLVDMDF 226
>pdb|2NNY|A Chain A, Crystal Structure Of The Ets1 Dimer Dna Complex.
pdb|2NNY|B Chain B, Crystal Structure Of The Ets1 Dimer Dna Complex
Length = 171
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 20 VPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWL 79
+P + GY G+G L ++L DK ++ G+G + + D + W
Sbjct: 51 IPAAALAGYTGSGPIQLWQFLLELLTDKSSQSFISWTGDGWEFK----LSDPDEVARRWG 106
Query: 80 ELKN 83
+ KN
Sbjct: 107 KRKN 110
>pdb|2STT|A Chain A, Solution Nmr Structure Of The Human Ets1DNA COMPLEX, 25
Structures
pdb|2STW|A Chain A, Solution Nmr Structure Of The Human Ets1DNA COMPLEX,
Restrained Regularized Mean Structure
Length = 96
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 20 VPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWL 79
+P + GY G+G L ++L DK ++ G+G + + D + W
Sbjct: 2 IPAAALAGYTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFK----LSDPDEVARRWG 57
Query: 80 ELKN 83
+ KN
Sbjct: 58 KRKN 61
>pdb|3PJ5|A Chain A, Crystal Structure Of Far-Red Fluorescent Protein Katushka
Crystallized At Ph 5.0
pdb|3PJ5|B Chain B, Crystal Structure Of Far-Red Fluorescent Protein Katushka
Crystallized At Ph 5.0
Length = 224
Score = 26.6 bits (57), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 56 FGEGSAMEKSVSVGDNGNLYEEW-LELKNGCLCCSVKDNGVKAIEN 100
F EG E+ + D G L L+NGCL +VK NGV N
Sbjct: 83 FPEGFTWERITTYEDGGVLTATQDTSLQNGCLIYNVKINGVNFPSN 128
>pdb|1CIV|A Chain A, Chloroplast Nadp-Dependent Malate Dehydrogenase From
Flaveria Bidentis
Length = 385
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEK 64
S ++VPD + A++ +PVT + + N + T + V++ ++G SA
Sbjct: 226 STTQVPDFLNAKIHGIPVTEVIRDRKWLEDEFTNMVQT-----RGGVLIKKWGRSSAAST 280
Query: 65 SVSVGD 70
+VS+ D
Sbjct: 281 AVSIVD 286
>pdb|3PJ7|A Chain A, Crystal Structure Of Far-Red Fluorescent Protein Katushka
Crystallized At Ph 8.5
pdb|3PJ7|B Chain B, Crystal Structure Of Far-Red Fluorescent Protein Katushka
Crystallized At Ph 8.5
pdb|3PJ7|C Chain C, Crystal Structure Of Far-Red Fluorescent Protein Katushka
Crystallized At Ph 8.5
pdb|3PJ7|D Chain D, Crystal Structure Of Far-Red Fluorescent Protein Katushka
Crystallized At Ph 8.5
Length = 229
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 56 FGEGSAMEKSVSVGDNGNLYEEW-LELKNGCLCCSVKDNGVKAIEN 100
F EG E+ + D G L L+NGCL +VK NGV N
Sbjct: 82 FPEGFTWERITTYEDGGVLTATQDTSLQNGCLIYNVKINGVNFPSN 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.139 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,927,658
Number of Sequences: 62578
Number of extensions: 255543
Number of successful extensions: 768
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 756
Number of HSP's gapped (non-prelim): 34
length of query: 184
length of database: 14,973,337
effective HSP length: 93
effective length of query: 91
effective length of database: 9,153,583
effective search space: 832976053
effective search space used: 832976053
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)