BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7718
(184 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q99MB4|CBWD1_RAT COBW domain-containing protein 1 OS=Rattus norvegicus GN=Cbwd1 PE=2
SV=2
Length = 394
Score = 237 bits (604), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 113/154 (73%), Positives = 130/154 (84%), Gaps = 12/154 (7%)
Query: 10 PDLVPAELQ------------PVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFG 57
P+LVP E + +PVTI+TGYLGAGKTTLLNYILTEQH++KIAVILNEFG
Sbjct: 19 PELVPIETKHQEKEENLDFIIKIPVTIVTGYLGAGKTTLLNYILTEQHNRKIAVILNEFG 78
Query: 58 EGSAMEKSVSVGDNGNLYEEWLELKNGCLCCSVKDNGVKAIENLMLKRGKFDYILLETTG 117
EGSA+EKS++V G LYEEWLEL+NGCLCCSVKDNG+KAIENLM K+GKFDYILLETTG
Sbjct: 79 EGSAVEKSLAVSQGGELYEEWLELRNGCLCCSVKDNGLKAIENLMQKKGKFDYILLETTG 138
Query: 118 LADPGPIAKVFWLDKELGSDIYLDGIVTVVDCKH 151
LADPG +A +FW+D ELGSDIYLDGI+TVVD K+
Sbjct: 139 LADPGAVASMFWVDAELGSDIYLDGIITVVDSKY 172
>sp|Q8IUF1|CBWD2_HUMAN COBW domain-containing protein 2 OS=Homo sapiens GN=CBWD2 PE=1 SV=1
Length = 395
Score = 235 bits (599), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 111/154 (72%), Positives = 128/154 (83%), Gaps = 12/154 (7%)
Query: 10 PDLVPAEL------------QPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFG 57
P+LVP E +PVTIITGYLGAGKTTLLNYILTEQH K++AVILNEFG
Sbjct: 20 PELVPMETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNEFG 79
Query: 58 EGSAMEKSVSVGDNGNLYEEWLELKNGCLCCSVKDNGVKAIENLMLKRGKFDYILLETTG 117
EGSA+EKS++V G LYEEWLEL+NGCLCCSVKDNG++AIENLM K+GKFDYILLETTG
Sbjct: 80 EGSALEKSLAVSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDYILLETTG 139
Query: 118 LADPGPIAKVFWLDKELGSDIYLDGIVTVVDCKH 151
LADPG +A +FW+D ELGSDIYLDGI+T+VD K+
Sbjct: 140 LADPGAVASMFWVDAELGSDIYLDGIITIVDSKY 173
>sp|Q8VEH6|CBWD1_MOUSE COBW domain-containing protein 1 OS=Mus musculus GN=Cbwd1 PE=2 SV=1
Length = 393
Score = 234 bits (598), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 111/153 (72%), Positives = 130/153 (84%), Gaps = 11/153 (7%)
Query: 10 PDLVPAE-----------LQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGE 58
P+LVP E + +PVTI+TGYLGAGKTTLLNYILTEQH++KIAVILNEFGE
Sbjct: 19 PELVPIETKNQEEENLDFITKIPVTIVTGYLGAGKTTLLNYILTEQHNRKIAVILNEFGE 78
Query: 59 GSAMEKSVSVGDNGNLYEEWLELKNGCLCCSVKDNGVKAIENLMLKRGKFDYILLETTGL 118
GSA+EKS++V G LYEEWLEL+NGCLCCSVKD+G++AIENLM K+GKFDYILLETTGL
Sbjct: 79 GSAVEKSLAVSQGGELYEEWLELRNGCLCCSVKDSGLRAIENLMQKKGKFDYILLETTGL 138
Query: 119 ADPGPIAKVFWLDKELGSDIYLDGIVTVVDCKH 151
ADPG +A +FW+D ELGSDIYLDGI+TVVD K+
Sbjct: 139 ADPGAVASMFWVDAELGSDIYLDGIITVVDSKY 171
>sp|Q9BRT8|CBWD1_HUMAN COBW domain-containing protein 1 OS=Homo sapiens GN=CBWD1 PE=1 SV=1
Length = 395
Score = 233 bits (594), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 110/154 (71%), Positives = 128/154 (83%), Gaps = 12/154 (7%)
Query: 10 PDLVPAEL------------QPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFG 57
P+LVP E +PVTIITGYLGAGKTTLLNYILTEQH K++AVILNEFG
Sbjct: 20 PELVPIETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNEFG 79
Query: 58 EGSAMEKSVSVGDNGNLYEEWLELKNGCLCCSVKDNGVKAIENLMLKRGKFDYILLETTG 117
EGSA+EKS++V G LYEEWLEL+NGCLCCSVKD+G++AIENLM K+GKFDYILLETTG
Sbjct: 80 EGSALEKSLAVSQGGELYEEWLELRNGCLCCSVKDSGLRAIENLMQKKGKFDYILLETTG 139
Query: 118 LADPGPIAKVFWLDKELGSDIYLDGIVTVVDCKH 151
LADPG +A +FW+D ELGSDIYLDGI+T+VD K+
Sbjct: 140 LADPGAVASMFWVDAELGSDIYLDGIITIVDSKY 173
>sp|Q5JTY5|CBWD3_HUMAN COBW domain-containing protein 3 OS=Homo sapiens GN=CBWD3 PE=2 SV=1
Length = 395
Score = 227 bits (579), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/154 (70%), Positives = 126/154 (81%), Gaps = 12/154 (7%)
Query: 10 PDLVPAEL------------QPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFG 57
P+LVP E +PVTIITGYLGAGKTTLLNYILTEQH K++AVILNE G
Sbjct: 20 PELVPIETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNESG 79
Query: 58 EGSAMEKSVSVGDNGNLYEEWLELKNGCLCCSVKDNGVKAIENLMLKRGKFDYILLETTG 117
EGSA+EKS++V G LYEEWLEL+NGCLCCSVKDNG++AIENLM K+GKFD ILLETTG
Sbjct: 80 EGSALEKSLAVSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDDILLETTG 139
Query: 118 LADPGPIAKVFWLDKELGSDIYLDGIVTVVDCKH 151
LADPG +A +FW+D ELGSDIYLDGI+T+VD K+
Sbjct: 140 LADPGAVASMFWVDAELGSDIYLDGIITIVDSKY 173
>sp|Q4V339|CBWD6_HUMAN COBW domain-containing protein 6 OS=Homo sapiens GN=CBWD6 PE=2 SV=1
Length = 395
Score = 227 bits (579), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/154 (70%), Positives = 126/154 (81%), Gaps = 12/154 (7%)
Query: 10 PDLVPAEL------------QPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFG 57
P+LVP E +PVTIITGYLGAGKTTLLNYILTEQH K++AVILNE G
Sbjct: 20 PELVPIETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNESG 79
Query: 58 EGSAMEKSVSVGDNGNLYEEWLELKNGCLCCSVKDNGVKAIENLMLKRGKFDYILLETTG 117
EGSA+EKS++V G LYEEWLEL+NGCLCCSVKDNG++AIENLM K+GKFD ILLETTG
Sbjct: 80 EGSALEKSLAVSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDDILLETTG 139
Query: 118 LADPGPIAKVFWLDKELGSDIYLDGIVTVVDCKH 151
LADPG +A +FW+D ELGSDIYLDGI+T+VD K+
Sbjct: 140 LADPGAVASMFWVDAELGSDIYLDGIITIVDSKY 173
>sp|Q5RIA9|CBWD5_HUMAN COBW domain-containing protein 5 OS=Homo sapiens GN=CBWD5 PE=2 SV=1
Length = 395
Score = 226 bits (575), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 108/154 (70%), Positives = 125/154 (81%), Gaps = 12/154 (7%)
Query: 10 PDLVPAEL------------QPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFG 57
P+LVP E +PVTIITGYLGAGKTTLLNYILTEQH K++AVILNE G
Sbjct: 20 PELVPIETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNESG 79
Query: 58 EGSAMEKSVSVGDNGNLYEEWLELKNGCLCCSVKDNGVKAIENLMLKRGKFDYILLETTG 117
EGSA+EKS++V G LYEEWLEL+NGCLCCSVKDNG++AIENLM K+GKFD ILLETTG
Sbjct: 80 EGSALEKSLAVSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDDILLETTG 139
Query: 118 LADPGPIAKVFWLDKELGSDIYLDGIVTVVDCKH 151
LADPG + +FW+D ELGSDIYLDGI+T+VD K+
Sbjct: 140 LADPGAVTSMFWVDAELGSDIYLDGIITIVDSKY 173
>sp|P53729|YN8H_YEAST Uncharacterized protein YNR029C OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YNR029C PE=1 SV=1
Length = 429
Score = 177 bits (448), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 82/139 (58%), Positives = 113/139 (81%), Gaps = 1/139 (0%)
Query: 16 ELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLY 75
E + +PV+IITGYLG+GK+TLL I + DKKIAVILNEFG+ S +EK++++ + N Y
Sbjct: 67 EKKRIPVSIITGYLGSGKSTLLEKIALKGADKKIAVILNEFGDSSEIEKAMTIKNGSNSY 126
Query: 76 EEWLELKNGCLCCSVKDNGVKAIENLMLKR-GKFDYILLETTGLADPGPIAKVFWLDKEL 134
+EWL+L NGCLCCS+K+ GVKAIE+++ + GK DYILLET+G+ADP PIAK+FW D+ L
Sbjct: 127 QEWLDLGNGCLCCSLKNIGVKAIEDMVERSPGKIDYILLETSGIADPAPIAKMFWQDEGL 186
Query: 135 GSDIYLDGIVTVVDCKHTI 153
S +Y+DGI+TV+DC+H +
Sbjct: 187 NSSVYIDGIITVLDCEHIL 205
>sp|O74310|YOG5_SCHPO COBW domain-containing protein C15D4.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC15D4.05 PE=3 SV=1
Length = 411
Score = 175 bits (444), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 78/138 (56%), Positives = 110/138 (79%), Gaps = 1/138 (0%)
Query: 15 AELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGN- 73
+ L PVPVTI+TG+LGAGKT+LL IL ++ K++AV++NE G+ +E+S+ G
Sbjct: 56 STLDPVPVTILTGFLGAGKTSLLRSILENRNGKRVAVLMNEVGDSGDLERSLMEDVGGEE 115
Query: 74 LYEEWLELKNGCLCCSVKDNGVKAIENLMLKRGKFDYILLETTGLADPGPIAKVFWLDKE 133
LYEEW+ L NGC+CC+VKDNG+KA+E +M ++G+FD I++ETTG+A+PGP+A+ FWLD
Sbjct: 116 LYEEWVALSNGCMCCTVKDNGIKALEKIMRQKGRFDNIVIETTGIANPGPLAQTFWLDDA 175
Query: 134 LGSDIYLDGIVTVVDCKH 151
L SD+ LDGIVTV+DCK+
Sbjct: 176 LKSDVKLDGIVTVIDCKN 193
>sp|Q9HZQ2|COBW_PSEAE Protein CobW OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 /
1C / PRS 101 / LMG 12228) GN=cobW PE=3 SV=1
Length = 375
Score = 109 bits (272), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 90/153 (58%), Gaps = 15/153 (9%)
Query: 17 LQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGE---GSAMEKSVSVG---- 69
L +PVTI+TG+LGAGKTTLL ++L ++IAVI+NEFGE + K S+G
Sbjct: 29 LAKLPVTIVTGFLGAGKTTLLRHMLDNAEGRRIAVIVNEFGELGIDGEILKQCSIGCSEE 88
Query: 70 -DNGNLYEEWLELKNGCLCCSVKDNGVKAIENLMLKRGKFDYILLETTGLADPGPIAKVF 128
G ++ EL NGCLCC+V++ + L+ +RG D IL+ET+GLA P P+ + F
Sbjct: 89 EAQGRVF----ELANGCLCCTVQEEFFPVMRELVARRGDLDQILIETSGLALPKPLVQAF 144
Query: 129 -WLDKELGSDIYLDGIVTVVDCKHTIDVSFPDY 160
W E+ + +D ++TVVD +F +
Sbjct: 145 QW--PEIRNACTVDAVITVVDSPAVAAGTFAAH 175
>sp|P24203|YJIA_ECOLI Uncharacterized GTP-binding protein YjiA OS=Escherichia coli
(strain K12) GN=yjiA PE=1 SV=3
Length = 318
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/142 (44%), Positives = 86/142 (60%), Gaps = 13/142 (9%)
Query: 17 LQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDN--GNL 74
+ P+ VT++TG+LGAGKTTLL +IL EQH KIAVI NEFGE VSV D G+
Sbjct: 1 MNPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGE-------VSVDDQLIGDR 53
Query: 75 YEEWLELKNGCLCCSVKDNGVKAIENLMLKRGK----FDYILLETTGLADPGPIAKVFWL 130
+ L NGC+CCS + A+ +L+ K FD +++E TG+ADPGPI + F+
Sbjct: 54 ATQIKTLTNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFS 113
Query: 131 DKELGSDIYLDGIVTVVDCKHT 152
+ L LDG++ +VD H
Sbjct: 114 HEVLCQRYLLDGVIALVDAVHA 135
>sp|P94400|YCIC_BACSU Putative metal chaperone YciC OS=Bacillus subtilis (strain 168)
GN=yciC PE=2 SV=1
Length = 397
Score = 107 bits (268), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/143 (41%), Positives = 97/143 (67%), Gaps = 11/143 (7%)
Query: 17 LQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLY- 75
++ +PVT+++GYLGAGKTTLLN IL + KIAVI+N+ E + + V G L
Sbjct: 1 MKKIPVTVLSGYLGAGKTTLLNSILQNREGLKIAVIVNDMSEVNI--DAGLVKQEGGLSR 58
Query: 76 --EEWLELKNGCLCCSVKDNGVKAIENLMLKRGKFDYILLETTGLADPGPIAKVF-WLDK 132
E+ +E+ NGC+CC+++++ + +E L K G+FDYI++E+TG+++P P+A+ F ++D+
Sbjct: 59 TDEKLVEMSNGCICCTLREDLLIEVEKLA-KDGRFDYIVIESTGISEPIPVAQTFSYIDE 117
Query: 133 ELGSDI----YLDGIVTVVDCKH 151
E+G D+ LD +VTVVD
Sbjct: 118 EMGIDLTKFCQLDTMVTVVDANR 140
>sp|P31521|P47K_PSECL 47 kDa protein OS=Pseudomonas chlororaphis PE=3 SV=1
Length = 419
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 95/142 (66%), Gaps = 12/142 (8%)
Query: 15 AELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGE----GSAMEKSVSVGD 70
A+ +PVT+++G+LGAGKTTLLN IL + ++AVI+N+ E ++++ VS+
Sbjct: 5 AQAGRLPVTVLSGFLGAGKTTLLNAILRNRQGLRVAVIVNDMSEVNLDAESVQRDVSLHR 64
Query: 71 NGNLYEEWLELKNGCLCCSVKDNGVKAIENLMLKRGKFDYILLETTGLADPGPIAKVF-W 129
+E +E+ NGC+CC+++ + ++ I +L ++ +FDY+L+E+TG+++P P+A+ F +
Sbjct: 65 G---RDELIEMSNGCICCTLRADLLEQISDLA-RQQRFDYLLIESTGISEPMPVAETFAF 120
Query: 130 LDKE---LGSDIYLDGIVTVVD 148
LD E L LD +VTVVD
Sbjct: 121 LDTEGFSLSELARLDTLVTVVD 142
>sp|Q869Q0|Y4527_DICDI COBW domain-containing protein DDB_G0274527 OS=Dictyostelium
discoideum GN=DDB_G0274527 PE=3 SV=1
Length = 475
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 87/146 (59%), Gaps = 14/146 (9%)
Query: 17 LQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSV--------SV 68
+ +PV++++G+LG+GKTTLLNYIL H KIAVI+N+ E + K +
Sbjct: 40 FEKLPVSVLSGFLGSGKTTLLNYILNSNHGLKIAVIVNDMSEVNIDSKLILENEFKITRT 99
Query: 69 GDNGNLYEEWLELKNGCLCCSVKDNGVKAIENLMLKRGKFDYILLETTGLADPGPIAKVF 128
E +E+ NGC+CC+++++ + + L K +FDY+++E++G+++P PIA+ F
Sbjct: 100 KATEKQVEAVVEMSNGCICCTMREDLLVEVTKLA-KEKRFDYLIIESSGISEPLPIAETF 158
Query: 129 WLD-----KELGSDIYLDGIVTVVDC 149
+ + L LD +VTVVDC
Sbjct: 159 TFEIDGSIENLKDYTKLDTMVTVVDC 184
>sp|P29937|COBW_PSEDE Protein CobW OS=Pseudomonas denitrificans GN=cobW PE=3 SV=3
Length = 354
Score = 90.1 bits (222), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 71/114 (62%), Gaps = 2/114 (1%)
Query: 20 VPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGE-GSAMEKSVSVGDNGNLYEEW 78
+P T+ITG+LGAGKTT++ +L K+I +I+NEFG+ G + G ++
Sbjct: 11 IPATVITGFLGAGKTTMIRNLLQNADGKRIGLIINEFGDLGVDGDVLKGCGAEACTEDDI 70
Query: 79 LELKNGCLCCSVKDNGVKAIENLMLKRGKFDYILLETTGLADPGPIAKVF-WLD 131
+EL NGC+CC+V D+ + + L+ + + D+I++ET+GLA P P+ F W D
Sbjct: 71 IELTNGCICCTVADDFIPTMTKLLERENRPDHIIIETSGLALPQPLIAAFNWPD 124
>sp|P33030|YEIR_ECOLI Uncharacterized protein YeiR OS=Escherichia coli (strain K12)
GN=yeiR PE=3 SV=2
Length = 328
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 66/104 (63%), Gaps = 7/104 (6%)
Query: 22 VTIITGYLGAGKTTLLNYILTEQH-DKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLE 80
+ITG+LG+GKTT + ++L + ++K AV++NEFGE ++ ++ + D+G L +E
Sbjct: 4 TNLITGFLGSGKTTSILHLLAHKDPNEKWAVLVNEFGE-VGIDGAL-LADSGALLKE--- 58
Query: 81 LKNGCLCCSVKDNGVKAIENLMLKRGKFDYILLETTGLADPGPI 124
+ GC+CC V ++ N +L++GK D +L+E TGL P I
Sbjct: 59 IPGGCMCC-VNGLPMQVGLNTLLRQGKPDRLLIEPTGLGHPKQI 101
>sp|P22042|YTR2_SPIAU Uncharacterized protein in trpE 3'region (Fragment)
OS=Spirochaeta aurantia PE=4 SV=1
Length = 60
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Query: 15 AELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSV 66
A PVT++TG+LG+GKTTL+N +L E+ + +++NEFGE +A+E +
Sbjct: 3 ASSHSTPVTVLTGFLGSGKTTLVNRLLKERPGTRFGLVVNEFGE-AALESQL 53
>sp|A6NM15|CBWD7_HUMAN Putative COBW domain-containing protein 7 OS=Homo sapiens GN=CBWD7
PE=5 SV=3
Length = 247
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/25 (72%), Positives = 23/25 (92%)
Query: 127 VFWLDKELGSDIYLDGIVTVVDCKH 151
+FW+D ELGSDIYLDGI+T+VD K+
Sbjct: 1 MFWVDAELGSDIYLDGIITIVDSKY 25
>sp|A1B4S0|DER_PARDP GTPase Der OS=Paracoccus denitrificans (strain Pd 1222) GN=der PE=3
SV=1
Length = 489
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTE 43
D D E D P+E +P+ + +I G AGK+TL+N IL E
Sbjct: 183 DGDDETEDWRPSESKPLQIAVI-GRPNAGKSTLINKILGE 221
>sp|Q54C25|GPN1_DICDI GPN-loop GTPase 1 homolog OS=Dictyostelium discoideum GN=xab1 PE=3
SV=1
Length = 396
Score = 34.7 bits (78), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 66/151 (43%), Gaps = 20/151 (13%)
Query: 18 QPVPVTIITGYLGAGKTTLLNYILTEQHDKKI-AVILNEFGEGSAM--EKSVSVGDNGNL 74
QP+ + I+ G G+GKTTLL I ++ KI I+N S + ++ + D N
Sbjct: 33 QPINI-IVLGMAGSGKTTLLQRIRAHLYENKIPGYIINLDPAVSKLPYTPNIDIRDTVNY 91
Query: 75 YEEWLELK---NGCLCCSVKDNGV---KAIENLMLKRGKFDYILLETTGLADPGPIAKVF 128
E + NG + S+ K +E + + DYI+L+T PG I
Sbjct: 92 KEVMKQFNLGPNGGIVTSLNLFSTKFDKVLEIVEKRSSSLDYIILDT-----PGQIEVFT 146
Query: 129 W-----LDKELGSDIYLDGIVTVVDCKHTID 154
W + EL + + +V VVD T+D
Sbjct: 147 WSASGTIITELMASSFPTVLVYVVDTPRTVD 177
>sp|Q9Z2Y9|KLOT_RAT Klotho OS=Rattus norvegicus GN=Kl PE=1 SV=1
Length = 1014
Score = 34.3 bits (77), Expect = 0.46, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 44 QHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLELKNGCLCCSVKDNGVKAIENLML 103
Q DK++A + EF G E GD ++ EWL KN L ++ K I
Sbjct: 745 QKDKEVAERVLEFDVGWLAEPIFGSGDYPHVMREWLNQKNNFLLPYFTEDEKKLI----- 799
Query: 104 KRGKFDYILLE--TTGLAD 120
RG FD++ L TT L D
Sbjct: 800 -RGSFDFLALSHYTTILVD 817
>sp|A1TN83|RNH2_ACIAC Ribonuclease HII OS=Acidovorax citrulli (strain AAC00-1) GN=rnhB
PE=3 SV=1
Length = 240
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 11/116 (9%)
Query: 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFG--EGSAM 62
S +P + A L P ++ G AG+ L ++ AVIL+E EG A
Sbjct: 3 SRKSLPRVEQAHLPWHPPGLVAGVDEAGRGPLAGPVVA------AAVILDELQPIEGLAD 56
Query: 63 EKSVSVGDNGNLYEEWLELKNGCLCCSVKDNGVKAIENLMLKRGKFDYILLETTGL 118
K+++ L++E ++ LCCSV + V+ I+ L + + + GL
Sbjct: 57 SKTLTAARREALFDE---IRAKALCCSVAEATVEEIDTLNILQATMLAMRRAVAGL 109
>sp|P0AGD7|SRP54_ECOLI Signal recognition particle protein OS=Escherichia coli (strain
K12) GN=ffh PE=1 SV=1
Length = 453
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 18 QPVPVTIITGYLGAGKTT---LLNYILTEQHDKKIAVI 52
QP V ++ G GAGKTT L L E+H KK+ V+
Sbjct: 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVV 135
>sp|P0AGD8|SRP54_ECOL6 Signal recognition particle protein OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=ffh PE=3 SV=1
Length = 453
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 18 QPVPVTIITGYLGAGKTT---LLNYILTEQHDKKIAVI 52
QP V ++ G GAGKTT L L E+H KK+ V+
Sbjct: 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVV 135
>sp|P0AGD9|SRP54_ECO57 Signal recognition particle protein OS=Escherichia coli O157:H7
GN=ffh PE=3 SV=1
Length = 453
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 18 QPVPVTIITGYLGAGKTT---LLNYILTEQHDKKIAVI 52
QP V ++ G GAGKTT L L E+H KK+ V+
Sbjct: 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVV 135
>sp|P44518|SRP54_HAEIN Signal recognition particle protein OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ffh PE=3
SV=1
Length = 462
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 18 QPVPVTIITGYLGAGKTT---LLNYILTEQHDKKIAVI 52
QP V ++ G GAGKTT L L E+H KK+ V+
Sbjct: 98 QPPAVILMAGLQGAGKTTSVGKLAKFLRERHKKKVLVV 135
>sp|Q8A2A1|IF2_BACTN Translation initiation factor IF-2 OS=Bacteroides thetaiotaomicron
(strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 /
VPI-5482) GN=infB PE=3 SV=1
Length = 1040
Score = 32.3 bits (72), Expect = 1.7, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 7/45 (15%)
Query: 14 PAELQP-VPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFG 57
P +LQP P+ + G++ GKT+LL+YI +K VI E G
Sbjct: 534 PEDLQPRAPIVTVMGHVDHGKTSLLDYI------RKANVIAGEAG 572
>sp|P43071|CDR1_CANAX Multidrug resistance protein CDR1 OS=Candida albicans GN=CDR1 PE=3
SV=1
Length = 1501
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 7/120 (5%)
Query: 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKS 65
D + D V ++P +T + G GAGKTTLLN L+E+ I G A++ S
Sbjct: 874 DRVILDHVDGWVKPGQITALMGASGAGKTTLLN-CLSERVTTGIITDGERLVNGHALDSS 932
Query: 66 VSVGDNGNLYEEWLELKNGCLCCSVKDNGVKAIENLMLKRGKFDYI-----LLETTGLAD 120
G + ++ + L + +++ + N + K+ K DY+ LLE T AD
Sbjct: 933 FQRSI-GYVQQQDVHLPTSTVREALQFSAYLRQSNKISKKEKDDYVDYVIDLLEMTDYAD 991
>sp|P78595|CDR2_CANAL Multidrug resistance protein CDR2 OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=CDR2 PE=3 SV=2
Length = 1499
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Query: 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKS 65
D + D V ++P +T + G GAGKTTLLN L+E+ I G A++ S
Sbjct: 872 DRVILDHVDGWVKPGQITALMGASGAGKTTLLN-CLSERVTTGIITDGERLVNGHALDSS 930
Query: 66 VSVGDNGNLYEEWLELKNGCLCCSVKDNGVKAIENLMLKRGKFDYI-----LLETTGLAD 120
G + ++ + L+ + +++ + N + K+ K DY+ LLE T AD
Sbjct: 931 FQRSI-GYVQQQDVHLETTTVREALQFSAYLRQSNKISKKEKDDYVDYVIDLLEMTDYAD 989
>sp|Q4QLG0|MURD_HAEI8 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Haemophilus
influenzae (strain 86-028NP) GN=murD PE=3 SV=1
Length = 437
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 9/83 (10%)
Query: 45 HDKKIAVILNE----FGEG-SAMEKSVSVGDNGNLYEEWLELKNGCLCCSVKDNGVKAIE 99
H+ ++ V+ NE FGEG + ++VS +N Y WL+ +NG VKD + E
Sbjct: 203 HNAEVGVLNNEDKLTFGEGENQARQTVSFAENSADY--WLKTENGKQYLMVKDEVILPCE 260
Query: 100 NLMLKRGKFDYI-LLETTGLADP 121
+ L G+ +Y+ +L T LA
Sbjct: 261 EVTLV-GRHNYMNILAATALAQA 282
>sp|A8LHW1|DER_DINSH GTPase Der OS=Dinoroseobacter shibae (strain DFL 12) GN=der PE=3
SV=1
Length = 490
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 1 MDSDSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQH 45
+D D++ E VP + +P+ V ++ G AGK+TL+N +L E
Sbjct: 184 LDPDAEEETVVRVPTKAKPLQVAVV-GRPNAGKSTLINQLLGEDR 227
>sp|Q972W3|UREG_SULTO Urease accessory protein UreG OS=Sulfolobus tokodaii (strain DSM
16993 / JCM 10545 / NBRC 100140 / 7) GN=ureG PE=3 SV=1
Length = 209
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 54/106 (50%), Gaps = 17/106 (16%)
Query: 25 ITGYLGAGKTTLLNYI---LTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLEL 81
+ G +G+GKTTL+ ++ L ++ + +I N+ + ++ + N L E+ L
Sbjct: 6 VLGPVGSGKTTLIEFLTEYLVKKEGLSVGIITNDV---ISSHDALRIYQNLVLKEKLLPK 62
Query: 82 KN-------GCLCCSVKDN---GVKAIENLMLKRGKFDYILLETTG 117
+N GC +++++ ++A+E LM KR D I +E+ G
Sbjct: 63 ENVIGIVTGGCPHTAIREDPSVNLRALETLM-KRTSLDVIFIESGG 107
>sp|Q9LTY6|UKL5_ARATH Uridine kinase-like protein 5 OS=Arabidopsis thaliana GN=UKL5
PE=2 SV=1
Length = 465
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 14 PAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVI 52
PA L+ V + G +GKTT+ N I+++ HD+++ ++
Sbjct: 23 PAPLKQPFVIGVAGGTASGKTTVCNMIMSQLHDQRVVLV 61
>sp|P17794|VIRB4_AGRT5 Protein virB4 OS=Agrobacterium tumefaciens (strain C58 / ATCC
33970) GN=virB4 PE=3 SV=3
Length = 789
Score = 32.0 bits (71), Expect = 2.5, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 11 DLVPAELQPVPVTIITGYLGAGKTTLLNYILT--EQH--DKKIAVILNEFGEGSAM 62
D +P E V +T I G +G GKTTL+ +IL EQ D+ AV+L + GS +
Sbjct: 418 DYIPHE-HDVGMTAIFGPIGRGKTTLMTFILAMLEQSMVDRAGAVVLFDKDRGSEL 472
>sp|A2SH40|IF2_METPP Translation initiation factor IF-2 OS=Methylibium petroleiphilum
(strain PM1) GN=infB PE=3 SV=1
Length = 948
Score = 32.0 bits (71), Expect = 2.6, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQ 44
+ D EV D VP E + PV + G++ GKT+LL+YI T +
Sbjct: 436 EDDVEVTD-VPLEPR-APVVTVMGHVDHGKTSLLDYIRTTR 474
>sp|Q64ZU2|AROK_BACFR Shikimate kinase OS=Bacteroides fragilis (strain YCH46) GN=aroK
PE=3 SV=1
Length = 179
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 14/54 (25%)
Query: 24 IITGYLGAGKTTL--------------LNYILTEQHDKKIAVILNEFGEGSAME 63
+TGY+GAGKTTL L++ + E+ K + + +E GE S E
Sbjct: 5 FLTGYMGAGKTTLGKALARELHIPFIDLDWYIEERFHKTVGELFSERGEASFRE 58
>sp|Q5LIQ7|AROK_BACFN Shikimate kinase OS=Bacteroides fragilis (strain ATCC 25285 /
NCTC 9343) GN=aroK PE=3 SV=1
Length = 179
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 14/54 (25%)
Query: 24 IITGYLGAGKTTL--------------LNYILTEQHDKKIAVILNEFGEGSAME 63
+TGY+GAGKTTL L++ + E+ K + + +E GE S E
Sbjct: 5 FLTGYMGAGKTTLGKALARELHIPFIDLDWYIEERFHKTVGELFSERGEASFRE 58
>sp|P09991|GLYC_LYCVA Pre-glycoprotein polyprotein GP complex OS=Lymphocytic
choriomeningitis virus (strain Armstrong) GN=GPC PE=1
SV=1
Length = 498
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 106 GKFDYILLETTGLADPGPIAKVFWLDKELGSDIYLDGIVTVVDCKHTIDVSFPDYFSI-- 163
G F + L +++G+ +PG W+ L +++ G V C D F D +
Sbjct: 266 GTFTWTLSDSSGVENPGGYCLTKWMI--LAAELKCFGNTAVAKCNVNHDAEFCDMLRLID 323
Query: 164 YLSILLSRLKELKVEQVHFF 183
Y LS+ KE +H F
Sbjct: 324 YNKAALSKFKEDVESALHLF 343
>sp|B0Z587|YCF2_OENGL Protein ycf2 OS=Oenothera glazioviana GN=ycf2-A PE=3 SV=1
Length = 2376
Score = 31.2 bits (69), Expect = 3.5, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 17 LQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEF 56
L P T++ G +G+G++ L+ + T + I V+LN+F
Sbjct: 1431 LHPSRATLVIGSIGSGRSYLVKSLATNSYVPLITVVLNKF 1470
>sp|Q9MEF2|YCF2_OENEH Protein ycf2 OS=Oenothera elata subsp. hookeri GN=ycf2-A PE=3 SV=2
Length = 2340
Score = 31.2 bits (69), Expect = 3.6, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 17 LQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEF 56
L P T++ G +G+G++ L+ + T + I V+LN+F
Sbjct: 1426 LHPSRATLVIGSIGSGRSYLVKSLATNSYVPLITVVLNKF 1465
>sp|B0Z503|YCF2_OENBI Protein ycf2 OS=Oenothera biennis GN=ycf2-A PE=3 SV=1
Length = 2325
Score = 31.2 bits (69), Expect = 3.6, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 17 LQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEF 56
L P T++ G +G+G++ L+ + T + I V+LN+F
Sbjct: 1426 LHPSRATLVIGSIGSGRSYLVKSLATNSYVPLITVVLNKF 1465
>sp|B0Z5H1|YCF2_OENPA Protein ycf2 OS=Oenothera parviflora GN=ycf2-A PE=3 SV=1
Length = 2312
Score = 31.2 bits (69), Expect = 3.7, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 17 LQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEF 56
L P T++ G +G+G++ L+ + T + I V+LN+F
Sbjct: 1429 LHPSRATLVIGSIGSGRSYLVKSLATNSYVPLITVVLNKF 1468
>sp|B0Z4R9|YCF2_OENAR Protein ycf2 OS=Oenothera argillicola GN=ycf2-A PE=3 SV=1
Length = 2360
Score = 31.2 bits (69), Expect = 3.7, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 17 LQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEF 56
L P T++ G +G+G++ L+ + T + I V+LN+F
Sbjct: 1415 LHPSRATLVIGSIGSGRSYLVKSLATNSYVPLITVVLNKF 1454
>sp|Q9CEB7|RSGA_LACLA Putative ribosome biogenesis GTPase RsgA OS=Lactococcus lactis
subsp. lactis (strain IL1403) GN=rsgA PE=3 SV=1
Length = 307
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 11/66 (16%)
Query: 22 VTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLEL 81
VT+ G GAGKTTLLN I E + G EK + G + + E+ EL
Sbjct: 167 VTVFMGQTGAGKTTLLNKIAPEM----------QLATGETSEK-LGRGRHTTRHVEFFEL 215
Query: 82 KNGCLC 87
G +
Sbjct: 216 AGGLIA 221
>sp|Q38XT2|RSGA_LACSS Putative ribosome biogenesis GTPase RsgA OS=Lactobacillus sakei
subsp. sakei (strain 23K) GN=rsgA PE=3 SV=1
Length = 299
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 13/80 (16%)
Query: 9 VPDLVPA--ELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSV 66
P+++ A + P T+ TG GAGK+TLLN+I D K+ + E + +S+
Sbjct: 148 TPEIIQAIEDTFPDKTTVFTGQTGAGKSTLLNHI-----DPKLNLATAE------ISQSL 196
Query: 67 SVGDNGNLYEEWLELKNGCL 86
+ G + + E + L +G +
Sbjct: 197 NRGKHTTRHIELIPLNDGLV 216
>sp|O35082|KLOT_MOUSE Klotho OS=Mus musculus GN=Kl PE=1 SV=2
Length = 1014
Score = 31.2 bits (69), Expect = 4.6, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 44 QHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLELKNGCLCCSVKDNGVKAIENLML 103
Q+DK++A + EF G E GD + +WL KN L ++ K L
Sbjct: 745 QNDKEVAERVLEFDIGWLAEPIFGSGDYPRVMRDWLNQKNNFLLPYFTEDEKK------L 798
Query: 104 KRGKFDYILLE--TTGLAD 120
RG FD++ + TT L D
Sbjct: 799 VRGSFDFLAVSHYTTILVD 817
>sp|A0A379|YCF2_COFAR Protein ycf2 OS=Coffea arabica GN=ycf2-A PE=3 SV=1
Length = 2281
Score = 30.8 bits (68), Expect = 4.7, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 17 LQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEF 56
L P ++ G +G+G++ L+ Y+ T + I V LN+F
Sbjct: 1625 LSPSRAILVIGSIGSGRSYLVKYLATNSYVPFITVFLNKF 1664
>sp|P06623|CN37_BOVIN 2',3'-cyclic-nucleotide 3'-phosphodiesterase OS=Bos taurus GN=CNP
PE=2 SV=2
Length = 400
Score = 30.8 bits (68), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLELKN 83
I+ G G+GK+TL +I+ + D V SA ++ G G+ EE+ +L
Sbjct: 34 ILRGLPGSGKSTLARFIVDKYRDGTKMV--------SADSYKITPGARGSFSEEYKQLDE 85
Query: 84 GCLCCSVKDNGVKAIENLMLKRGKFDYIL 112
C +D V +++ +R + + +
Sbjct: 86 DLAACCRRDFRVLVLDDTNHERERLEQLF 114
>sp|P52426|MDHP_SPIOL Malate dehydrogenase [NADP], chloroplastic OS=Spinacia oleracea
GN=MDH PE=1 SV=1
Length = 435
Score = 30.8 bits (68), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEK 64
S ++VPD V A++ VPV + + A K L TE+ K+ V++ ++G SA
Sbjct: 275 STTQVPDFVNAQIGGVPVKEV---IKAQK--WLEEEFTEKVRKRGGVLIQKWGRSSAAST 329
Query: 65 SVSVGDNGN 73
+VS+ D N
Sbjct: 330 AVSIVDAIN 338
>sp|Q0TPL7|RSGA_CLOP1 Putative ribosome biogenesis GTPase RsgA OS=Clostridium perfringens
(strain ATCC 13124 / NCTC 8237 / Type A) GN=rsgA PE=3
SV=1
Length = 287
Score = 30.8 bits (68), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 11/65 (16%)
Query: 22 VTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLEL 81
+T++ G GAGK+TLLN + +H GS EK + G + + E +++
Sbjct: 156 ITVLCGPSGAGKSTLLNSFIDREH----------METGSVSEK-IGRGKHTTRHSELIDV 204
Query: 82 KNGCL 86
NG L
Sbjct: 205 DNGYL 209
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.139 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,573,466
Number of Sequences: 539616
Number of extensions: 3168109
Number of successful extensions: 13939
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 13874
Number of HSP's gapped (non-prelim): 99
length of query: 184
length of database: 191,569,459
effective HSP length: 110
effective length of query: 74
effective length of database: 132,211,699
effective search space: 9783665726
effective search space used: 9783665726
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)