Query psy7718
Match_columns 184
No_of_seqs 193 out of 2339
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 17:01:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7718.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7718hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0523 Putative GTPases (G3E 100.0 2E-34 4.2E-39 236.8 10.7 147 20-184 1-148 (323)
2 KOG2743|consensus 100.0 2.8E-34 6E-39 228.6 9.9 138 17-154 54-192 (391)
3 TIGR02475 CobW cobalamin biosy 100.0 1.2E-31 2.6E-36 222.7 11.1 166 18-184 2-176 (341)
4 PRK11537 putative GTP-binding 100.0 5.6E-31 1.2E-35 216.8 9.4 133 17-154 1-137 (318)
5 PF02492 cobW: CobW/HypB/UreG, 100.0 1E-29 2.2E-34 193.8 5.1 124 21-153 1-127 (178)
6 cd03112 CobW_like The function 99.9 1.8E-27 4E-32 178.1 9.1 145 21-184 1-149 (158)
7 COG1126 GlnQ ABC-type polar am 99.8 4.4E-20 9.6E-25 142.1 7.2 133 3-135 11-183 (240)
8 COG1131 CcmA ABC-type multidru 99.8 7.5E-19 1.6E-23 143.6 8.5 125 4-128 14-176 (293)
9 COG1127 Ttg2A ABC-type transpo 99.8 1E-18 2.2E-23 136.4 7.6 147 3-151 17-208 (263)
10 COG1116 TauB ABC-type nitrate/ 99.8 3.3E-18 7.2E-23 134.5 9.0 121 4-124 13-166 (248)
11 COG1136 SalX ABC-type antimicr 99.7 1.3E-17 2.9E-22 130.4 8.7 143 7-149 18-203 (226)
12 COG1125 OpuBA ABC-type proline 99.7 1E-17 2.2E-22 132.0 6.8 158 3-160 10-222 (309)
13 COG2884 FtsE Predicted ATPase 99.7 3.7E-17 8.1E-22 123.7 9.6 124 5-128 13-177 (223)
14 COG1120 FepC ABC-type cobalami 99.7 1.3E-17 2.7E-22 132.9 6.9 145 3-149 11-199 (258)
15 PRK13537 nodulation ABC transp 99.7 3.4E-17 7.5E-22 134.6 7.4 125 4-128 17-178 (306)
16 COG4152 ABC-type uncharacteriz 99.7 2.4E-17 5.3E-22 129.1 5.7 122 3-124 11-166 (300)
17 COG1121 ZnuC ABC-type Mn/Zn tr 99.7 1.4E-16 3.1E-21 126.4 10.1 53 4-56 14-66 (254)
18 TIGR01188 drrA daunorubicin re 99.7 4.9E-17 1.1E-21 133.4 7.0 124 4-127 3-163 (302)
19 cd03293 ABC_NrtD_SsuB_transpor 99.7 7.5E-17 1.6E-21 126.4 7.6 123 7-129 17-172 (220)
20 PRK13536 nodulation factor exp 99.7 5E-17 1.1E-21 135.4 7.0 125 4-128 51-212 (340)
21 COG4555 NatA ABC-type Na+ tran 99.7 6.5E-17 1.4E-21 123.5 6.7 123 3-125 10-170 (245)
22 cd03229 ABC_Class3 This class 99.7 2E-16 4.3E-21 120.3 8.2 123 5-129 11-141 (178)
23 COG3842 PotA ABC-type spermidi 99.7 8.1E-17 1.8E-21 133.5 6.1 145 3-148 14-196 (352)
24 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.7 2.5E-16 5.3E-21 123.2 8.2 123 7-129 17-181 (218)
25 cd03259 ABC_Carb_Solutes_like 99.7 2.3E-16 4.9E-21 123.0 7.9 126 4-129 10-171 (213)
26 TIGR03522 GldA_ABC_ATP gliding 99.7 1.9E-16 4.2E-21 129.9 7.8 125 4-128 12-173 (301)
27 PRK11247 ssuB aliphatic sulfon 99.7 2.6E-16 5.6E-21 126.4 8.3 122 4-127 22-172 (257)
28 TIGR01186 proV glycine betaine 99.7 2E-16 4.4E-21 132.6 8.0 125 3-127 2-168 (363)
29 PRK11650 ugpC glycerol-3-phosp 99.7 2.2E-16 4.8E-21 132.3 8.0 123 5-127 15-173 (356)
30 PRK11248 tauB taurine transpor 99.7 2.9E-16 6.3E-21 126.0 8.1 124 4-127 11-167 (255)
31 COG3839 MalK ABC-type sugar tr 99.7 2.3E-16 5E-21 130.1 7.6 114 9-122 18-167 (338)
32 cd03261 ABC_Org_Solvent_Resist 99.7 2.4E-16 5.2E-21 124.7 7.4 125 4-128 10-176 (235)
33 cd03226 ABC_cobalt_CbiO_domain 99.7 4.2E-16 9.2E-21 120.9 8.5 123 7-129 13-167 (205)
34 COG1118 CysA ABC-type sulfate/ 99.7 4.1E-16 8.9E-21 125.7 8.5 119 4-122 12-171 (345)
35 cd03268 ABC_BcrA_bacitracin_re 99.7 4.6E-16 1E-20 120.9 8.6 125 4-128 10-166 (208)
36 TIGR02314 ABC_MetN D-methionin 99.7 3E-16 6.6E-21 130.7 7.9 122 7-128 18-180 (343)
37 PRK13538 cytochrome c biogenes 99.6 2.6E-16 5.6E-21 122.1 6.9 126 4-129 11-170 (204)
38 cd03265 ABC_DrrA DrrA is the A 99.6 4.1E-16 8.9E-21 122.2 8.0 125 4-128 10-171 (220)
39 cd03296 ABC_CysA_sulfate_impor 99.6 4.5E-16 9.7E-21 123.5 8.3 125 4-128 12-176 (239)
40 cd03301 ABC_MalK_N The N-termi 99.6 4.1E-16 9E-21 121.5 7.8 126 4-129 10-171 (213)
41 cd03230 ABC_DR_subfamily_A Thi 99.6 5.4E-16 1.2E-20 117.4 8.0 120 6-129 12-136 (173)
42 TIGR02315 ABC_phnC phosphonate 99.6 7.6E-16 1.6E-20 122.3 9.2 123 6-128 14-185 (243)
43 PRK11432 fbpC ferric transport 99.6 3.9E-16 8.4E-21 130.6 7.7 124 4-127 16-175 (351)
44 TIGR03608 L_ocin_972_ABC putat 99.6 3.2E-16 7E-21 121.5 6.7 126 4-129 8-175 (206)
45 TIGR03265 PhnT2 putative 2-ami 99.6 3.4E-16 7.4E-21 131.0 7.2 124 4-127 14-173 (353)
46 PRK10851 sulfate/thiosulfate t 99.6 4.1E-16 8.9E-21 130.5 7.6 124 4-127 12-175 (353)
47 TIGR01189 ccmA heme ABC export 99.6 7E-16 1.5E-20 119.1 8.3 125 4-128 10-167 (198)
48 PRK13539 cytochrome c biogenes 99.6 5E-16 1.1E-20 120.8 7.5 126 4-129 12-168 (207)
49 cd03218 ABC_YhbG The ABC trans 99.6 7.1E-16 1.5E-20 121.7 8.3 125 4-128 10-173 (232)
50 PRK10908 cell division protein 99.6 8.7E-16 1.9E-20 120.5 8.2 124 5-128 13-177 (222)
51 TIGR02673 FtsE cell division A 99.6 8.7E-16 1.9E-20 119.8 8.1 124 6-129 14-178 (214)
52 cd03266 ABC_NatA_sodium_export 99.6 9E-16 1.9E-20 120.0 8.2 122 8-129 19-177 (218)
53 TIGR01288 nodI ATP-binding ABC 99.6 5.6E-16 1.2E-20 127.2 7.3 125 4-128 14-175 (303)
54 cd03292 ABC_FtsE_transporter F 99.6 1.1E-15 2.3E-20 119.2 8.6 123 7-129 14-177 (214)
55 COG0411 LivG ABC-type branched 99.6 1.3E-16 2.8E-21 124.9 3.3 126 4-129 14-190 (250)
56 COG1137 YhbG ABC-type (unclass 99.6 9E-17 2E-21 122.6 2.1 126 3-128 13-179 (243)
57 TIGR00960 3a0501s02 Type II (G 99.6 8E-16 1.7E-20 120.2 7.5 123 7-129 16-179 (216)
58 cd03263 ABC_subfamily_A The AB 99.6 9.4E-16 2E-20 120.1 7.9 123 7-129 15-174 (220)
59 cd03260 ABC_PstB_phosphate_tra 99.6 1.4E-15 3.1E-20 119.6 8.9 125 4-129 10-182 (227)
60 cd03231 ABC_CcmA_heme_exporter 99.6 1.5E-15 3.3E-20 117.6 8.9 123 4-128 10-165 (201)
61 PRK11153 metN DL-methionine tr 99.6 8.1E-16 1.8E-20 128.3 7.7 123 6-128 17-180 (343)
62 cd03256 ABC_PhnC_transporter A 99.6 1.3E-15 2.8E-20 120.8 8.5 78 7-84 14-99 (241)
63 cd03228 ABCC_MRP_Like The MRP 99.6 3E-15 6.5E-20 113.1 9.9 116 8-129 16-137 (171)
64 cd03224 ABC_TM1139_LivF_branch 99.6 1.8E-15 3.8E-20 118.6 8.9 125 4-128 10-172 (222)
65 cd03294 ABC_Pro_Gly_Bertaine T 99.6 1.2E-15 2.6E-20 123.2 8.2 125 4-128 34-200 (269)
66 PRK11000 maltose/maltodextrin 99.6 7.3E-16 1.6E-20 129.7 7.1 124 4-127 13-172 (369)
67 cd03235 ABC_Metallic_Cations A 99.6 1.3E-15 2.9E-20 118.7 8.0 51 5-55 10-60 (213)
68 PRK13540 cytochrome c biogenes 99.6 1.5E-15 3.2E-20 117.5 8.1 124 4-129 11-168 (200)
69 PRK11629 lolD lipoprotein tran 99.6 1.4E-15 3E-20 120.3 8.0 122 7-128 22-185 (233)
70 TIGR03864 PQQ_ABC_ATP ABC tran 99.6 1.3E-15 2.9E-20 120.6 7.9 124 5-128 12-172 (236)
71 cd03219 ABC_Mj1267_LivG_branch 99.6 1.3E-15 2.7E-20 120.5 7.7 125 4-128 10-183 (236)
72 cd03258 ABC_MetN_methionine_tr 99.6 1.4E-15 3E-20 120.1 7.9 121 8-128 19-180 (233)
73 PRK14250 phosphate ABC transpo 99.6 2.5E-15 5.4E-20 119.4 9.4 123 4-127 13-170 (241)
74 TIGR03740 galliderm_ABC gallid 99.6 1.4E-15 3.1E-20 119.4 7.9 124 5-128 11-164 (223)
75 cd03246 ABCC_Protease_Secretio 99.6 3.2E-15 7E-20 113.2 9.5 116 7-128 15-136 (173)
76 cd03269 ABC_putative_ATPase Th 99.6 1.4E-15 3.1E-20 118.3 7.6 125 5-129 11-169 (210)
77 TIGR03258 PhnT 2-aminoethylpho 99.6 1.1E-15 2.3E-20 128.3 7.3 125 4-128 15-177 (362)
78 PRK10247 putative ABC transpor 99.6 1.9E-15 4.1E-20 119.0 8.3 124 4-128 17-177 (225)
79 COG3638 ABC-type phosphate/pho 99.6 7.4E-16 1.6E-20 120.2 5.7 81 5-85 15-103 (258)
80 TIGR03410 urea_trans_UrtE urea 99.6 1.6E-15 3.4E-20 119.6 7.7 125 4-128 10-171 (230)
81 cd03264 ABC_drug_resistance_li 99.6 1.6E-15 3.5E-20 118.1 7.6 124 5-129 11-171 (211)
82 cd03267 ABC_NatA_like Similar 99.6 2.3E-15 4.9E-20 119.4 8.5 53 3-55 30-82 (236)
83 PRK09536 btuD corrinoid ABC tr 99.6 1.8E-15 3.9E-20 128.4 8.4 124 4-127 13-178 (402)
84 PRK09452 potA putrescine/sperm 99.6 1.5E-15 3.2E-20 128.0 7.8 124 4-127 24-183 (375)
85 cd03225 ABC_cobalt_CbiO_domain 99.6 1.8E-15 3.9E-20 117.7 7.7 49 7-55 14-62 (211)
86 TIGR01166 cbiO cobalt transpor 99.6 3E-15 6.4E-20 114.8 8.7 52 4-55 2-53 (190)
87 cd03262 ABC_HisP_GlnQ_permease 99.6 1.9E-15 4.2E-20 117.6 7.8 126 4-129 10-176 (213)
88 TIGR02211 LolD_lipo_ex lipopro 99.6 1.7E-15 3.7E-20 118.6 7.5 123 7-129 18-182 (221)
89 cd03215 ABC_Carb_Monos_II This 99.6 2.2E-15 4.8E-20 115.0 7.8 118 9-128 15-144 (182)
90 PRK10584 putative ABC transpor 99.6 2.1E-15 4.6E-20 118.7 7.8 121 8-128 24-186 (228)
91 cd03223 ABCD_peroxisomal_ALDP 99.6 9.1E-15 2E-19 110.1 10.7 115 6-129 13-132 (166)
92 COG4525 TauB ABC-type taurine 99.6 2.7E-15 5.7E-20 114.4 7.7 89 3-91 12-102 (259)
93 PRK10895 lipopolysaccharide AB 99.6 3.8E-15 8.1E-20 118.3 8.9 124 4-127 13-176 (241)
94 COG0410 LivF ABC-type branched 99.6 2.2E-15 4.8E-20 117.2 7.2 131 3-133 12-181 (237)
95 TIGR01184 ntrCD nitrate transp 99.6 3E-15 6.6E-20 118.2 8.2 119 10-128 1-154 (230)
96 cd03247 ABCC_cytochrome_bd The 99.6 6.7E-15 1.4E-19 111.9 9.7 117 8-129 16-139 (178)
97 PRK15439 autoinducer 2 ABC tra 99.6 3.7E-15 8.1E-20 130.3 9.4 123 4-128 21-180 (510)
98 PRK11607 potG putrescine trans 99.6 1.9E-15 4.1E-20 127.5 7.1 122 5-126 30-187 (377)
99 PRK13543 cytochrome c biogenes 99.6 5.4E-15 1.2E-19 115.6 8.9 123 4-128 21-177 (214)
100 cd03216 ABC_Carb_Monos_I This 99.6 4.8E-15 1E-19 111.3 8.1 107 4-129 10-123 (163)
101 COG1122 CbiO ABC-type cobalt t 99.6 5.3E-15 1.1E-19 117.1 8.6 143 7-150 17-200 (235)
102 TIGR03005 ectoine_ehuA ectoine 99.6 3.8E-15 8.3E-20 119.1 7.9 51 5-55 11-61 (252)
103 PRK10619 histidine/lysine/argi 99.6 3E-15 6.5E-20 120.0 7.3 124 5-128 16-192 (257)
104 COG1135 AbcC ABC-type metal io 99.6 4.1E-15 8.9E-20 120.1 8.0 122 7-128 19-181 (339)
105 cd03213 ABCG_EPDR ABCG transpo 99.6 7.5E-15 1.6E-19 113.2 9.1 121 7-129 22-152 (194)
106 TIGR03411 urea_trans_UrtD urea 99.6 5.1E-15 1.1E-19 117.6 8.3 125 4-128 12-183 (242)
107 PRK09493 glnQ glutamine ABC tr 99.6 4.3E-15 9.2E-20 117.9 7.7 125 4-128 11-176 (240)
108 cd03295 ABC_OpuCA_Osmoprotecti 99.6 3.8E-15 8.2E-20 118.4 7.4 122 7-128 14-175 (242)
109 cd03232 ABC_PDR_domain2 The pl 99.6 5.1E-15 1.1E-19 113.9 7.8 121 7-129 20-149 (192)
110 PRK10070 glycine betaine trans 99.6 3.2E-15 6.9E-20 126.8 7.1 124 4-127 38-203 (400)
111 COG4181 Predicted ABC-type tra 99.6 7.6E-15 1.6E-19 109.8 8.2 143 5-150 21-208 (228)
112 PRK11831 putative ABC transpor 99.6 3.6E-15 7.9E-20 120.4 7.0 125 4-128 17-183 (269)
113 PRK11300 livG leucine/isoleuci 99.6 5.6E-15 1.2E-19 118.2 8.0 82 4-85 15-102 (255)
114 TIGR03415 ABC_choXWV_ATP choli 99.6 4.1E-15 9E-20 125.4 7.6 124 4-127 34-203 (382)
115 PRK13548 hmuV hemin importer A 99.6 6.5E-15 1.4E-19 118.3 8.1 82 4-85 12-98 (258)
116 TIGR00972 3a0107s01c2 phosphat 99.6 7.9E-15 1.7E-19 116.9 8.5 122 4-128 11-184 (247)
117 PRK10762 D-ribose transporter 99.6 6.5E-15 1.4E-19 128.5 8.6 125 4-128 14-181 (501)
118 PRK11614 livF leucine/isoleuci 99.6 8.9E-15 1.9E-19 115.9 8.4 125 4-128 15-177 (237)
119 PRK13650 cbiO cobalt transport 99.6 6.1E-15 1.3E-19 119.8 7.6 122 7-128 20-180 (279)
120 PRK10253 iron-enterobactin tra 99.6 4.7E-15 1E-19 119.5 6.9 52 4-55 17-68 (265)
121 PRK11124 artP arginine transpo 99.6 7.4E-15 1.6E-19 116.7 7.9 125 4-128 12-181 (242)
122 PRK11264 putative amino-acid A 99.6 8.5E-15 1.8E-19 116.8 8.3 52 4-55 13-64 (250)
123 TIGR00968 3a0106s01 sulfate AB 99.6 8.2E-15 1.8E-19 116.2 8.0 125 4-128 10-170 (237)
124 COG1117 PstB ABC-type phosphat 99.6 1.2E-14 2.7E-19 112.0 8.6 136 4-140 17-201 (253)
125 PRK10575 iron-hydroxamate tran 99.6 6.3E-15 1.4E-19 118.7 7.2 51 5-55 22-72 (265)
126 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.6 1.7E-14 3.6E-19 106.3 8.8 100 5-129 11-111 (144)
127 PRK09700 D-allose transporter 99.6 9.7E-15 2.1E-19 127.6 8.9 125 4-128 15-185 (510)
128 PRK13635 cbiO cobalt transport 99.6 9E-15 1.9E-19 118.8 8.1 121 7-127 20-179 (279)
129 cd03297 ABC_ModC_molybdenum_tr 99.6 9E-15 2E-19 114.1 7.5 123 4-129 10-172 (214)
130 PRK13647 cbiO cobalt transport 99.6 1.1E-14 2.3E-19 118.0 8.2 51 6-56 17-67 (274)
131 cd03298 ABC_ThiQ_thiamine_tran 99.6 2.1E-14 4.6E-19 111.7 9.6 118 12-129 16-169 (211)
132 cd03300 ABC_PotA_N PotA is an 99.6 9.4E-15 2E-19 115.5 7.6 123 5-127 11-169 (232)
133 PRK09984 phosphonate/organopho 99.6 1.2E-14 2.5E-19 116.9 8.2 82 4-85 14-108 (262)
134 TIGR00101 ureG urease accessor 99.6 1.9E-14 4.2E-19 111.5 9.0 118 22-154 3-127 (199)
135 cd03257 ABC_NikE_OppD_transpor 99.6 1.3E-14 2.8E-19 114.0 8.2 48 8-55 19-66 (228)
136 PRK14247 phosphate ABC transpo 99.6 2.6E-14 5.6E-19 114.1 9.7 122 5-128 14-186 (250)
137 PRK11231 fecE iron-dicitrate t 99.6 1.1E-14 2.4E-19 116.6 7.6 52 4-55 12-63 (255)
138 PRK14267 phosphate ABC transpo 99.5 1.9E-14 4E-19 115.1 8.8 82 4-85 14-107 (253)
139 TIGR02982 heterocyst_DevA ABC 99.5 1.2E-14 2.7E-19 113.9 7.5 49 7-55 18-66 (220)
140 COG1134 TagH ABC-type polysacc 99.5 6.3E-15 1.4E-19 115.6 5.7 51 5-55 38-88 (249)
141 PRK13549 xylose transporter AT 99.5 1.8E-14 3.9E-19 125.8 9.0 125 4-128 15-183 (506)
142 PRK13637 cbiO cobalt transport 99.5 1.6E-14 3.6E-19 117.7 8.0 50 7-56 20-69 (287)
143 cd03234 ABCG_White The White s 99.5 2.5E-14 5.4E-19 112.6 8.6 123 7-129 20-184 (226)
144 cd03217 ABC_FeS_Assembly ABC-t 99.5 3.6E-14 7.7E-19 109.9 9.3 122 5-128 11-144 (200)
145 TIGR03873 F420-0_ABC_ATP propo 99.5 1.8E-14 3.9E-19 115.5 7.7 124 4-127 11-176 (256)
146 cd03299 ABC_ModC_like Archeal 99.5 2.2E-14 4.8E-19 113.6 8.1 121 8-128 13-169 (235)
147 PRK13644 cbiO cobalt transport 99.5 2.3E-14 4.9E-19 116.1 8.2 51 6-56 14-64 (274)
148 PRK13632 cbiO cobalt transport 99.5 2.5E-14 5.5E-19 115.6 8.4 122 6-127 21-181 (271)
149 PRK09544 znuC high-affinity zi 99.5 4.4E-14 9.6E-19 113.1 9.6 51 5-55 15-65 (251)
150 PRK13638 cbiO cobalt transport 99.5 2.6E-14 5.6E-19 115.6 8.3 52 4-55 11-62 (271)
151 PRK13646 cbiO cobalt transport 99.5 2.7E-14 5.9E-19 116.3 8.4 49 7-55 20-68 (286)
152 PRK14259 phosphate ABC transpo 99.5 5.1E-14 1.1E-18 113.8 9.9 124 4-128 23-194 (269)
153 cd03244 ABCC_MRP_domain2 Domai 99.5 1.3E-13 2.8E-18 108.0 11.8 119 7-128 17-179 (221)
154 PRK13541 cytochrome c biogenes 99.5 2.9E-14 6.2E-19 109.9 8.0 50 6-56 13-62 (195)
155 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.5 2.2E-14 4.7E-19 113.0 7.3 52 4-55 32-83 (224)
156 PRK10982 galactose/methyl gala 99.5 3.1E-14 6.7E-19 123.9 8.9 125 4-128 8-174 (491)
157 cd03222 ABC_RNaseL_inhibitor T 99.5 2.8E-14 6.1E-19 108.6 7.6 100 4-127 10-110 (177)
158 PRK14241 phosphate transporter 99.5 3.6E-14 7.8E-19 113.8 8.6 81 4-84 14-106 (258)
159 cd03250 ABCC_MRP_domain1 Domai 99.5 4.7E-14 1E-18 109.3 9.0 48 8-55 19-66 (204)
160 cd03251 ABCC_MsbA MsbA is an e 99.5 8.1E-14 1.8E-18 110.1 10.5 118 8-128 16-178 (234)
161 cd03233 ABC_PDR_domain1 The pl 99.5 2.3E-14 5E-19 111.1 7.2 122 5-128 18-158 (202)
162 cd03252 ABCC_Hemolysin The ABC 99.5 1.2E-13 2.6E-18 109.3 11.4 119 7-128 15-178 (237)
163 PRK13652 cbiO cobalt transport 99.5 3.1E-14 6.7E-19 115.5 8.2 50 6-55 16-65 (277)
164 cd03245 ABCC_bacteriocin_expor 99.5 9.6E-14 2.1E-18 108.7 10.7 120 7-129 17-181 (220)
165 PRK13634 cbiO cobalt transport 99.5 3.1E-14 6.7E-19 116.3 8.1 50 7-56 20-69 (290)
166 TIGR01277 thiQ thiamine ABC tr 99.5 5.1E-14 1.1E-18 109.9 9.0 120 9-128 13-168 (213)
167 TIGR02142 modC_ABC molybdenum 99.5 2.7E-14 5.9E-19 119.6 7.9 116 12-127 15-170 (354)
168 PRK14242 phosphate transporter 99.5 5.5E-14 1.2E-18 112.4 9.3 51 5-55 17-72 (253)
169 PRK14246 phosphate ABC transpo 99.5 4.4E-14 9.5E-19 113.5 8.7 84 4-87 20-114 (257)
170 PRK13643 cbiO cobalt transport 99.5 4E-14 8.6E-19 115.5 8.6 50 7-56 19-68 (288)
171 PRK14240 phosphate transporter 99.5 8.8E-14 1.9E-18 111.0 10.3 123 5-128 14-186 (250)
172 PRK13636 cbiO cobalt transport 99.5 3.3E-14 7.1E-19 115.7 8.0 122 6-127 18-180 (283)
173 TIGR02769 nickel_nikE nickel i 99.5 4.4E-14 9.5E-19 113.8 8.6 50 6-55 23-72 (265)
174 PRK14235 phosphate transporter 99.5 3.8E-14 8.3E-19 114.3 8.1 51 5-55 30-85 (267)
175 COG1124 DppF ABC-type dipeptid 99.5 5.4E-14 1.2E-18 110.2 8.6 48 8-55 21-68 (252)
176 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.5 1.5E-13 3.2E-18 108.9 11.2 49 7-55 16-64 (238)
177 PRK13547 hmuV hemin importer A 99.5 3.1E-14 6.8E-19 115.3 7.5 52 4-55 11-70 (272)
178 PRK11288 araG L-arabinose tran 99.5 3E-14 6.5E-19 124.3 7.9 125 4-128 14-180 (501)
179 PRK14273 phosphate ABC transpo 99.5 7.9E-14 1.7E-18 111.6 9.7 52 4-55 17-73 (254)
180 TIGR01978 sufC FeS assembly AT 99.5 4.5E-14 9.8E-19 112.0 8.2 52 4-55 10-63 (243)
181 PRK11144 modC molybdate transp 99.5 5.2E-14 1.1E-18 117.9 8.9 114 12-127 16-167 (352)
182 cd03214 ABC_Iron-Siderophores_ 99.5 1.5E-14 3.3E-19 110.2 5.2 119 5-129 10-138 (180)
183 PRK14263 phosphate ABC transpo 99.5 8.4E-14 1.8E-18 112.1 9.8 125 4-129 18-190 (261)
184 TIGR02633 xylG D-xylose ABC tr 99.5 4.3E-14 9.4E-19 123.2 8.6 52 4-55 11-64 (500)
185 PRK13649 cbiO cobalt transport 99.5 4.4E-14 9.5E-19 114.7 8.1 49 7-55 20-68 (280)
186 PRK14269 phosphate ABC transpo 99.5 8.8E-14 1.9E-18 110.9 9.6 125 4-129 12-183 (246)
187 PRK10744 pstB phosphate transp 99.5 8.5E-14 1.8E-18 111.9 9.6 52 4-55 23-79 (260)
188 cd03254 ABCC_Glucan_exporter_l 99.5 2.1E-13 4.5E-18 107.4 11.6 49 7-55 16-64 (229)
189 TIGR02324 CP_lyasePhnL phospho 99.5 5.7E-14 1.2E-18 110.3 8.2 48 7-54 21-68 (224)
190 PRK10771 thiQ thiamine transpo 99.5 7.6E-14 1.7E-18 110.2 9.0 117 11-127 16-168 (232)
191 COG3845 ABC-type uncharacteriz 99.5 3.9E-14 8.5E-19 120.2 7.7 126 5-130 15-182 (501)
192 PRK13651 cobalt transporter AT 99.5 5.7E-14 1.2E-18 115.5 8.5 48 7-54 20-67 (305)
193 COG4559 ABC-type hemin transpo 99.5 5.1E-14 1.1E-18 108.5 7.6 51 5-55 12-62 (259)
194 PRK13648 cbiO cobalt transport 99.5 5E-14 1.1E-18 113.7 7.8 50 7-56 22-71 (269)
195 COG4619 ABC-type uncharacteriz 99.5 4.3E-14 9.4E-19 105.4 6.6 51 4-54 13-63 (223)
196 PRK14249 phosphate ABC transpo 99.5 1.2E-13 2.6E-18 110.4 9.6 80 5-85 15-106 (251)
197 PRK14272 phosphate ABC transpo 99.5 6.8E-14 1.5E-18 111.7 8.2 81 5-85 15-107 (252)
198 PRK14248 phosphate ABC transpo 99.5 1.3E-13 2.9E-18 111.1 9.9 52 4-55 31-87 (268)
199 PRK14268 phosphate ABC transpo 99.5 1.1E-13 2.5E-18 111.0 9.4 52 4-55 22-78 (258)
200 cd03248 ABCC_TAP TAP, the Tran 99.5 2.2E-13 4.7E-18 107.2 10.7 120 7-129 27-191 (226)
201 PRK15177 Vi polysaccharide exp 99.5 6.1E-14 1.3E-18 109.7 7.4 45 8-52 1-45 (213)
202 COG4598 HisP ABC-type histidin 99.5 3.8E-14 8.2E-19 106.9 5.8 134 3-136 15-200 (256)
203 PRK14270 phosphate ABC transpo 99.5 8.7E-14 1.9E-18 111.1 8.3 80 5-85 15-106 (251)
204 PRK13641 cbiO cobalt transport 99.5 8.7E-14 1.9E-18 113.4 8.4 50 7-56 20-69 (287)
205 PRK14254 phosphate ABC transpo 99.5 9.9E-14 2.1E-18 113.0 8.6 51 5-55 50-105 (285)
206 PRK14262 phosphate ABC transpo 99.5 1.4E-13 3.1E-18 109.8 9.4 123 5-128 14-186 (250)
207 cd03290 ABCC_SUR1_N The SUR do 99.5 1.5E-13 3.3E-18 107.5 9.3 50 6-55 13-62 (218)
208 PRK14256 phosphate ABC transpo 99.5 1.5E-13 3.3E-18 109.8 9.3 52 4-55 14-70 (252)
209 PRK13631 cbiO cobalt transport 99.5 1.1E-13 2.4E-18 114.5 8.7 49 7-55 39-87 (320)
210 PRK14261 phosphate ABC transpo 99.5 1.8E-13 3.9E-18 109.5 9.6 51 5-55 17-72 (253)
211 PRK14274 phosphate ABC transpo 99.5 1.1E-13 2.4E-18 111.0 8.5 52 4-55 22-78 (259)
212 PRK13642 cbiO cobalt transport 99.5 7.4E-14 1.6E-18 113.3 7.5 49 7-55 20-68 (277)
213 PRK15112 antimicrobial peptide 99.5 9.9E-14 2.2E-18 111.9 8.1 49 7-55 26-74 (267)
214 PRK13633 cobalt transporter AT 99.5 9.7E-14 2.1E-18 112.7 8.1 49 7-55 23-71 (280)
215 PRK13639 cbiO cobalt transport 99.5 1E-13 2.2E-18 112.3 8.2 50 6-55 14-63 (275)
216 PRK14237 phosphate transporter 99.5 1.8E-13 3.9E-18 110.4 9.6 51 5-55 31-86 (267)
217 PLN03211 ABC transporter G-25; 99.5 1.1E-13 2.3E-18 124.3 9.0 83 4-86 78-163 (659)
218 PRK13640 cbiO cobalt transport 99.5 8E-14 1.7E-18 113.4 7.5 121 7-127 20-182 (282)
219 PRK11701 phnK phosphonate C-P 99.5 1.3E-13 2.8E-18 110.6 8.5 53 4-56 16-68 (258)
220 PRK15079 oligopeptide ABC tran 99.5 8.6E-14 1.9E-18 115.6 7.7 49 7-55 34-82 (331)
221 cd03369 ABCC_NFT1 Domain 2 of 99.5 2.5E-13 5.5E-18 105.4 9.7 119 7-128 21-165 (207)
222 PRK13645 cbiO cobalt transport 99.5 9.7E-14 2.1E-18 113.2 7.7 48 8-55 25-72 (289)
223 cd03253 ABCC_ATM1_transporter 99.5 3E-13 6.5E-18 106.9 10.2 50 6-55 13-62 (236)
224 PRK14265 phosphate ABC transpo 99.5 2.2E-13 4.7E-18 110.4 9.5 52 4-55 30-86 (274)
225 PRK14253 phosphate ABC transpo 99.5 1.9E-13 4.1E-18 109.0 9.1 51 5-55 14-69 (249)
226 PRK03695 vitamin B12-transport 99.5 2.3E-13 5E-18 108.7 9.4 47 8-55 10-56 (248)
227 PRK14251 phosphate ABC transpo 99.5 1.7E-13 3.6E-18 109.5 8.5 52 4-55 14-70 (251)
228 PRK14238 phosphate transporter 99.5 2E-13 4.4E-18 110.4 9.0 123 5-128 35-207 (271)
229 TIGR01257 rim_protein retinal- 99.5 6.5E-14 1.4E-18 136.7 7.2 122 7-128 1952-2110(2272)
230 PRK14243 phosphate transporter 99.5 2.4E-13 5.2E-18 109.6 9.4 51 5-55 21-76 (264)
231 TIGR03269 met_CoM_red_A2 methy 99.5 6.4E-14 1.4E-18 122.7 6.3 51 4-54 10-62 (520)
232 PRK14260 phosphate ABC transpo 99.5 1.9E-13 4.1E-18 109.8 8.3 51 5-55 18-73 (259)
233 PRK10419 nikE nickel transport 99.5 1.3E-13 2.8E-18 111.3 7.3 51 6-56 24-74 (268)
234 PRK14244 phosphate ABC transpo 99.5 2E-13 4.3E-18 109.1 8.1 51 5-55 16-71 (251)
235 PRK14236 phosphate transporter 99.5 2.4E-13 5.1E-18 110.0 8.6 51 5-55 36-91 (272)
236 PRK14271 phosphate ABC transpo 99.5 2.5E-13 5.5E-18 110.1 8.7 52 4-55 31-87 (276)
237 TIGR02323 CP_lyasePhnK phospho 99.5 2.5E-13 5.4E-18 108.6 8.5 51 5-55 14-64 (253)
238 PRK14252 phosphate ABC transpo 99.5 3.7E-13 8.1E-18 108.4 9.5 51 5-55 27-82 (265)
239 PRK11308 dppF dipeptide transp 99.5 2.1E-13 4.5E-18 113.2 8.2 49 7-55 28-76 (327)
240 PRK11819 putative ABC transpor 99.5 2.7E-13 5.9E-18 119.7 9.4 49 6-54 19-67 (556)
241 COG0488 Uup ATPase components 99.5 4E-13 8.8E-18 117.3 10.1 50 4-53 13-62 (530)
242 PRK14239 phosphate transporter 99.5 2.4E-13 5.2E-18 108.6 8.0 52 4-55 15-71 (252)
243 PF00005 ABC_tran: ABC transpo 99.4 2.2E-13 4.8E-18 98.7 7.1 46 10-55 1-46 (137)
244 PRK09700 D-allose transporter 99.4 2.8E-13 6.1E-18 118.4 8.9 48 8-55 277-324 (510)
245 PRK13546 teichoic acids export 99.4 3.1E-13 6.8E-18 109.0 8.4 51 5-55 35-85 (264)
246 cd00267 ABC_ATPase ABC (ATP-bi 99.4 3.3E-13 7.2E-18 100.4 8.0 105 5-128 10-120 (157)
247 cd03237 ABC_RNaseL_inhibitor_d 99.4 3E-13 6.5E-18 108.0 8.2 49 7-55 7-60 (246)
248 cd03238 ABC_UvrA The excision 99.4 3.9E-13 8.4E-18 102.3 8.4 120 4-129 5-130 (176)
249 PRK14258 phosphate ABC transpo 99.4 2.5E-13 5.4E-18 109.2 7.7 51 5-55 18-73 (261)
250 PRK15064 ABC transporter ATP-b 99.4 3.6E-13 7.8E-18 118.3 9.3 52 4-55 329-380 (530)
251 PRK14275 phosphate ABC transpo 99.4 4.2E-13 9.1E-18 109.4 9.0 51 5-55 50-105 (286)
252 COG4586 ABC-type uncharacteriz 99.4 8E-14 1.7E-18 111.0 4.6 52 7-58 37-88 (325)
253 PRK11022 dppD dipeptide transp 99.4 2.3E-13 4.9E-18 112.9 7.4 49 7-55 20-72 (326)
254 TIGR00073 hypB hydrogenase acc 99.4 1.5E-13 3.4E-18 106.9 6.0 95 19-121 21-117 (207)
255 PRK14245 phosphate ABC transpo 99.4 4.5E-13 9.9E-18 106.9 8.8 51 5-55 14-69 (250)
256 PRK10938 putative molybdenum t 99.4 4.9E-13 1.1E-17 116.4 9.6 51 4-54 13-63 (490)
257 PRK15056 manganese/iron transp 99.4 5.5E-13 1.2E-17 107.9 9.3 50 6-55 19-68 (272)
258 PRK14266 phosphate ABC transpo 99.4 5.6E-13 1.2E-17 106.4 9.2 80 5-85 14-105 (250)
259 PRK11174 cysteine/glutathione 99.4 4.7E-13 1E-17 118.8 9.6 121 4-128 360-525 (588)
260 PRK10261 glutathione transport 99.4 2.4E-13 5.2E-18 121.5 7.8 49 7-55 337-385 (623)
261 TIGR01257 rim_protein retinal- 99.4 3.7E-13 8E-18 131.6 9.6 123 6-128 942-1101(2272)
262 PRK11147 ABC transporter ATPas 99.4 5.7E-13 1.2E-17 119.4 9.9 50 4-53 329-378 (635)
263 PRK09473 oppD oligopeptide tra 99.4 3.4E-13 7.3E-18 112.0 7.9 49 7-55 29-80 (330)
264 TIGR03719 ABC_ABC_ChvD ATP-bin 99.4 9.3E-13 2E-17 116.2 11.0 49 6-54 17-65 (552)
265 PRK15064 ABC transporter ATP-b 99.4 4.2E-13 9.2E-18 117.9 8.8 51 4-54 11-61 (530)
266 TIGR02868 CydC thiol reductant 99.4 5.6E-13 1.2E-17 116.9 9.5 70 7-76 348-421 (529)
267 PRK10261 glutathione transport 99.4 3.3E-13 7.1E-18 120.7 8.0 49 7-55 29-77 (623)
268 TIGR02770 nickel_nikD nickel i 99.4 4.6E-13 9.9E-18 105.7 8.0 47 9-55 1-51 (230)
269 PRK10463 hydrogenase nickel in 99.4 1.6E-13 3.4E-18 111.3 5.4 99 17-123 101-201 (290)
270 PRK09580 sufC cysteine desulfu 99.4 9E-13 1.9E-17 104.9 9.5 52 4-55 11-64 (248)
271 TIGR03797 NHPM_micro_ABC2 NHPM 99.4 7E-13 1.5E-17 119.7 9.9 120 6-128 465-628 (686)
272 cd03289 ABCC_CFTR2 The CFTR su 99.4 2.2E-12 4.8E-17 104.6 11.9 78 6-85 16-98 (275)
273 PRK15093 antimicrobial peptide 99.4 4.7E-13 1E-17 111.2 8.0 49 7-55 20-72 (330)
274 COG4133 CcmA ABC-type transpor 99.4 4E-13 8.6E-18 101.7 6.8 88 4-91 12-103 (209)
275 PRK10790 putative multidrug tr 99.4 7.9E-13 1.7E-17 117.5 9.9 119 6-127 353-515 (592)
276 COG1129 MglA ABC-type sugar tr 99.4 4.6E-13 1E-17 115.2 8.0 128 3-130 17-187 (500)
277 PRK11176 lipid transporter ATP 99.4 1.1E-12 2.5E-17 116.2 10.7 50 7-56 356-405 (582)
278 PRK15134 microcin C ABC transp 99.4 3.9E-13 8.5E-18 118.0 7.3 49 6-55 298-346 (529)
279 TIGR03269 met_CoM_red_A2 methy 99.4 4.3E-13 9.2E-18 117.6 7.5 48 7-54 297-344 (520)
280 KOG0059|consensus 99.4 4.1E-13 8.9E-18 124.1 7.6 120 9-128 580-738 (885)
281 TIGR02633 xylG D-xylose ABC tr 99.4 7.1E-13 1.5E-17 115.6 8.7 50 6-55 272-322 (500)
282 PRK13549 xylose transporter AT 99.4 8.6E-13 1.9E-17 115.3 9.2 50 6-55 274-324 (506)
283 PRK10636 putative ABC transpor 99.4 1.1E-12 2.5E-17 117.5 10.2 52 4-55 11-62 (638)
284 PRK13657 cyclic beta-1,2-gluca 99.4 1.5E-12 3.2E-17 115.7 10.8 119 7-128 348-511 (588)
285 TIGR03719 ABC_ABC_ChvD ATP-bin 99.4 8.8E-13 1.9E-17 116.4 9.2 50 4-53 332-381 (552)
286 PRK11819 putative ABC transpor 99.4 7.3E-13 1.6E-17 117.0 8.6 50 4-53 334-383 (556)
287 PRK14264 phosphate ABC transpo 99.4 1.1E-12 2.3E-17 107.9 9.1 51 5-55 56-111 (305)
288 PRK11288 araG L-arabinose tran 99.4 7.1E-13 1.5E-17 115.7 8.4 48 8-55 267-314 (501)
289 cd03291 ABCC_CFTR1 The CFTR su 99.4 1.8E-12 4E-17 105.5 10.3 49 6-54 49-97 (282)
290 PRK14255 phosphate ABC transpo 99.4 8.6E-13 1.9E-17 105.4 8.2 51 5-55 16-71 (252)
291 PRK15134 microcin C ABC transp 99.4 6.3E-13 1.4E-17 116.7 7.9 49 7-55 22-75 (529)
292 cd03288 ABCC_SUR2 The SUR doma 99.4 2.5E-12 5.4E-17 103.2 10.6 49 7-55 34-82 (257)
293 PRK10418 nikD nickel transport 99.4 1E-12 2.2E-17 105.3 8.2 50 6-55 15-68 (254)
294 PRK10762 D-ribose transporter 99.4 1.2E-12 2.5E-17 114.4 9.3 48 8-55 266-313 (501)
295 CHL00131 ycf16 sulfate ABC tra 99.4 1.1E-12 2.4E-17 104.7 8.5 51 5-55 18-70 (252)
296 TIGR02857 CydD thiol reductant 99.4 1.6E-12 3.4E-17 114.1 10.0 79 7-86 335-418 (529)
297 PRK11147 ABC transporter ATPas 99.4 1.6E-12 3.6E-17 116.4 10.2 51 4-54 13-63 (635)
298 PRK10636 putative ABC transpor 99.4 2.1E-12 4.5E-17 115.8 10.8 51 4-54 322-372 (638)
299 TIGR03796 NHPM_micro_ABC1 NHPM 99.4 1.8E-12 3.9E-17 117.4 10.2 120 6-128 491-655 (710)
300 TIGR00955 3a01204 The Eye Pigm 99.4 1.1E-12 2.3E-17 117.3 8.4 82 5-86 36-122 (617)
301 PRK13409 putative ATPase RIL; 99.4 1.2E-12 2.6E-17 116.3 8.7 46 9-54 354-399 (590)
302 COG4604 CeuD ABC-type enteroch 99.4 2.3E-13 4.9E-18 104.0 3.2 53 3-55 10-62 (252)
303 COG4107 PhnK ABC-type phosphon 99.4 6.7E-12 1.4E-16 94.5 11.0 51 3-53 15-65 (258)
304 TIGR01193 bacteriocin_ABC ABC- 99.4 2.1E-12 4.6E-17 117.0 10.0 79 6-85 486-569 (708)
305 PRK10789 putative multidrug tr 99.4 3E-12 6.5E-17 113.4 10.3 51 6-56 327-377 (569)
306 TIGR03375 type_I_sec_LssB type 99.4 2.7E-12 5.9E-17 116.1 10.2 119 6-127 477-640 (694)
307 TIGR02203 MsbA_lipidA lipid A 99.4 3.3E-12 7.2E-17 112.9 10.5 50 6-55 344-393 (571)
308 COG1119 ModF ABC-type molybden 99.4 4.1E-12 8.9E-17 99.9 9.7 55 4-58 41-97 (257)
309 COG4674 Uncharacterized ABC-ty 99.4 3.1E-13 6.7E-18 103.1 3.4 86 4-89 15-107 (249)
310 PRK13545 tagH teichoic acids e 99.4 1.6E-12 3.4E-17 113.0 7.9 49 7-55 37-85 (549)
311 PRK14257 phosphate ABC transpo 99.4 3.9E-12 8.4E-17 105.7 9.9 50 6-55 94-148 (329)
312 PRK11160 cysteine/glutathione 99.4 3.4E-12 7.3E-17 113.2 9.9 118 7-127 353-514 (574)
313 COG1123 ATPase components of v 99.4 2E-12 4.4E-17 112.0 8.1 50 7-56 304-353 (539)
314 PRK10535 macrolide transporter 99.4 4.4E-12 9.6E-17 113.9 10.3 121 7-127 21-183 (648)
315 TIGR01842 type_I_sec_PrtD type 99.3 5.1E-12 1.1E-16 111.3 10.3 49 7-55 331-379 (544)
316 TIGR00958 3a01208 Conjugate Tr 99.3 4.8E-12 1E-16 114.8 10.3 50 6-55 493-542 (711)
317 COG4608 AppF ABC-type oligopep 99.3 1.2E-12 2.5E-17 104.5 5.4 111 8-127 27-148 (268)
318 PRK15439 autoinducer 2 ABC tra 99.3 3E-12 6.6E-17 112.0 8.4 48 8-55 277-324 (510)
319 TIGR03771 anch_rpt_ABC anchore 99.3 5E-12 1.1E-16 99.4 8.8 42 15-56 1-42 (223)
320 PRK10938 putative molybdenum t 99.3 2E-12 4.2E-17 112.6 7.0 52 4-55 270-322 (490)
321 TIGR01846 type_I_sec_HlyB type 99.3 6E-12 1.3E-16 113.8 10.1 120 6-128 469-633 (694)
322 COG2274 SunT ABC-type bacterio 99.3 5.8E-12 1.3E-16 113.5 9.9 119 7-128 486-649 (709)
323 PRK10982 galactose/methyl gala 99.3 4.3E-12 9.3E-17 110.5 8.8 49 7-55 261-309 (491)
324 TIGR00954 3a01203 Peroxysomal 99.3 8.8E-12 1.9E-16 112.2 10.4 48 6-53 464-511 (659)
325 KOG0061|consensus 99.3 7.1E-12 1.5E-16 111.8 9.2 123 6-128 42-210 (613)
326 TIGR01192 chvA glucan exporter 99.3 8.6E-12 1.9E-16 110.9 9.6 49 7-55 348-396 (585)
327 KOG0058|consensus 99.3 6.4E-12 1.4E-16 111.1 8.2 71 6-76 480-555 (716)
328 TIGR02204 MsbA_rel ABC transpo 99.3 1.2E-11 2.6E-16 109.5 10.0 49 7-55 353-401 (576)
329 COG4175 ProV ABC-type proline/ 99.3 1.1E-12 2.4E-17 106.4 3.0 118 9-126 43-202 (386)
330 PLN03073 ABC transporter F fam 99.3 9.1E-12 2E-16 112.8 8.7 48 7-54 522-569 (718)
331 TIGR00956 3a01205 Pleiotropic 99.3 8.3E-12 1.8E-16 120.0 8.7 80 6-85 775-858 (1394)
332 PLN03140 ABC transporter G fam 99.3 7.7E-12 1.7E-16 120.4 8.2 81 5-85 891-975 (1470)
333 KOG0057|consensus 99.3 1.5E-11 3.3E-16 105.8 9.1 74 4-78 361-440 (591)
334 PRK10522 multidrug transporter 99.3 2.8E-11 6.1E-16 106.8 11.1 118 7-127 336-488 (547)
335 COG1132 MdlB ABC-type multidru 99.3 1.2E-11 2.5E-16 109.6 8.6 50 6-55 341-390 (567)
336 COG0488 Uup ATPase components 99.3 1.3E-11 2.7E-16 108.0 8.6 51 3-53 330-381 (530)
337 COG4988 CydD ABC-type transpor 99.3 5.4E-11 1.2E-15 103.2 12.2 55 4-58 331-385 (559)
338 COG0396 sufC Cysteine desulfur 99.3 1.9E-11 4.1E-16 95.3 7.8 49 7-55 17-67 (251)
339 COG3840 ThiQ ABC-type thiamine 99.3 3.1E-11 6.7E-16 91.3 8.6 74 13-86 18-94 (231)
340 TIGR01194 cyc_pep_trnsptr cycl 99.2 3.7E-11 8E-16 106.2 10.1 49 7-55 355-403 (555)
341 COG4148 ModC ABC-type molybdat 99.2 2.9E-11 6.2E-16 96.9 7.7 117 12-128 16-168 (352)
342 COG4987 CydC ABC-type transpor 99.2 4.7E-11 1E-15 102.6 9.4 51 7-57 351-401 (573)
343 TIGR00956 3a01205 Pleiotropic 99.2 2.8E-11 6.1E-16 116.4 8.8 80 5-84 72-159 (1394)
344 PLN03073 ABC transporter F fam 99.2 2E-11 4.3E-16 110.6 7.3 40 4-43 187-226 (718)
345 cd03236 ABC_RNaseL_inhibitor_d 99.2 7.8E-11 1.7E-15 94.6 9.7 44 8-52 15-58 (255)
346 PLN03232 ABC transporter C fam 99.2 4.7E-11 1E-15 115.6 9.8 70 7-76 1249-1323(1495)
347 COG1101 PhnK ABC-type uncharac 99.2 1.3E-11 2.7E-16 95.6 4.2 51 5-55 17-67 (263)
348 COG4618 ArpD ABC-type protease 99.2 5.1E-11 1.1E-15 101.9 7.8 52 4-55 346-397 (580)
349 PLN03130 ABC transporter C fam 99.2 1.2E-10 2.6E-15 113.3 11.4 70 7-76 1252-1326(1622)
350 PLN03140 ABC transporter G fam 99.2 4.9E-11 1.1E-15 114.9 8.5 81 6-86 177-262 (1470)
351 KOG0055|consensus 99.2 8.8E-11 1.9E-15 109.2 8.1 70 6-75 365-439 (1228)
352 PTZ00265 multidrug resistance 99.2 1.1E-10 2.3E-15 112.8 9.0 48 7-54 398-445 (1466)
353 PRK13409 putative ATPase RIL; 99.2 7.9E-11 1.7E-15 104.7 7.4 48 4-52 83-131 (590)
354 TIGR00957 MRP_assoc_pro multi 99.1 1.5E-10 3.2E-15 112.4 9.8 70 7-76 1299-1373(1522)
355 cd03283 ABC_MutS-like MutS-lik 99.1 5.8E-11 1.3E-15 92.0 5.4 106 6-126 13-125 (199)
356 PTZ00243 ABC transporter; Prov 99.1 2.7E-10 5.7E-15 110.7 10.9 70 7-76 1323-1397(1560)
357 TIGR01187 potA spermidine/putr 99.1 9.6E-11 2.1E-15 97.2 6.4 103 25-127 1-139 (325)
358 TIGR01271 CFTR_protein cystic 99.1 2.5E-10 5.4E-15 110.6 10.1 49 7-55 439-487 (1490)
359 COG1123 ATPase components of v 99.1 1.7E-10 3.8E-15 100.1 7.7 49 8-56 23-75 (539)
360 PTZ00265 multidrug resistance 99.1 3.3E-10 7.2E-15 109.4 10.0 41 6-46 1180-1220(1466)
361 TIGR01271 CFTR_protein cystic 99.1 3.1E-10 6.7E-15 110.0 9.3 70 6-76 1231-1305(1490)
362 PTZ00243 ABC transporter; Prov 99.1 4.6E-10 9.9E-15 109.1 9.7 48 6-53 672-719 (1560)
363 TIGR00176 mobB molybdopterin-g 99.1 1.4E-10 3.1E-15 86.4 4.6 104 22-129 1-110 (155)
364 TIGR00957 MRP_assoc_pro multi 99.1 4.8E-10 1E-14 108.9 9.3 48 7-54 651-698 (1522)
365 KOG0056|consensus 99.1 2.5E-10 5.5E-15 97.6 6.2 52 5-56 549-600 (790)
366 PLN03232 ABC transporter C fam 99.1 6.8E-10 1.5E-14 107.7 10.0 46 6-51 629-674 (1495)
367 COG4178 ABC-type uncharacteriz 99.1 9.7E-10 2.1E-14 96.7 9.7 50 4-53 403-452 (604)
368 PLN03130 ABC transporter C fam 99.0 1E-09 2.2E-14 107.0 10.3 48 6-53 629-677 (1622)
369 cd03280 ABC_MutS2 MutS2 homolo 99.0 1.3E-09 2.8E-14 84.4 8.7 33 9-41 16-49 (200)
370 COG0444 DppD ABC-type dipeptid 99.0 2E-09 4.2E-14 87.9 9.5 49 7-55 18-71 (316)
371 cd03278 ABC_SMC_barmotin Barmo 99.0 2E-09 4.4E-14 83.2 9.2 36 8-44 10-46 (197)
372 COG4161 ArtP ABC-type arginine 99.0 1.6E-09 3.5E-14 80.8 7.6 121 3-123 11-176 (242)
373 COG4778 PhnL ABC-type phosphon 99.0 7.7E-10 1.7E-14 83.1 4.7 51 7-57 24-74 (235)
374 COG4136 ABC-type uncharacteriz 99.0 3.6E-09 7.7E-14 78.1 8.0 89 6-94 14-110 (213)
375 KOG0927|consensus 99.0 2.2E-09 4.7E-14 92.6 7.8 44 3-46 84-127 (614)
376 KOG0055|consensus 98.9 2.1E-09 4.6E-14 100.2 7.6 81 6-87 1002-1087(1228)
377 cd00820 PEPCK_HprK Phosphoenol 98.9 2E-09 4.4E-14 75.1 5.5 36 6-41 1-36 (107)
378 COG1763 MobB Molybdopterin-gua 98.9 2.8E-09 6E-14 79.7 6.0 95 20-117 2-102 (161)
379 cd03243 ABC_MutS_homologs The 98.9 2.6E-09 5.7E-14 82.7 6.1 32 11-42 20-51 (202)
380 KOG0062|consensus 98.9 2.1E-09 4.5E-14 92.2 5.5 40 3-42 89-128 (582)
381 cd03272 ABC_SMC3_euk Eukaryoti 98.9 1.3E-08 2.7E-13 80.8 8.8 34 3-41 11-44 (243)
382 COG4167 SapF ABC-type antimicr 98.9 3.1E-09 6.8E-14 80.8 4.8 49 7-55 26-74 (267)
383 cd03282 ABC_MSH4_euk MutS4 hom 98.9 5.7E-09 1.2E-13 81.2 6.3 39 5-43 14-52 (204)
384 TIGR00750 lao LAO/AO transport 98.8 1.2E-08 2.6E-13 83.8 8.1 51 7-57 21-73 (300)
385 KOG0065|consensus 98.8 7.8E-09 1.7E-13 96.9 7.0 87 5-91 802-892 (1391)
386 PRK10751 molybdopterin-guanine 98.8 6.4E-09 1.4E-13 78.8 5.0 40 18-57 4-45 (173)
387 PF03308 ArgK: ArgK protein; 98.8 9.2E-09 2E-13 82.0 5.0 96 19-122 28-136 (266)
388 KOG0054|consensus 98.7 4.5E-08 9.9E-13 93.1 9.7 53 5-57 1151-1203(1381)
389 cd03240 ABC_Rad50 The catalyti 98.7 4.9E-08 1.1E-12 75.9 8.3 28 13-41 16-43 (204)
390 COG1703 ArgK Putative periplas 98.7 2.3E-08 5E-13 80.9 6.3 107 8-122 39-158 (323)
391 cd03270 ABC_UvrA_I The excisio 98.7 1E-08 2.3E-13 80.8 4.0 33 5-37 6-38 (226)
392 KOG0066|consensus 98.7 6E-08 1.3E-12 82.5 8.2 49 5-53 598-646 (807)
393 cd03287 ABC_MSH3_euk MutS3 hom 98.7 4.8E-08 1E-12 77.0 6.6 36 7-42 18-53 (222)
394 cd03284 ABC_MutS1 MutS1 homolo 98.7 2.7E-08 5.8E-13 78.1 5.0 36 6-42 17-52 (216)
395 KOG0927|consensus 98.7 3.9E-08 8.6E-13 85.0 6.4 47 8-54 404-450 (614)
396 COG4615 PvdE ABC-type sideroph 98.7 2.1E-08 4.5E-13 84.1 4.5 48 8-55 337-384 (546)
397 PRK09435 membrane ATPase/prote 98.7 5.3E-08 1.2E-12 80.9 6.7 102 18-122 54-163 (332)
398 cd01130 VirB11-like_ATPase Typ 98.7 8.6E-08 1.9E-12 73.4 7.2 46 10-55 15-60 (186)
399 COG2401 ABC-type ATPase fused 98.7 2.1E-08 4.6E-13 84.5 4.0 38 6-43 395-432 (593)
400 COG4172 ABC-type uncharacteriz 98.6 7.9E-08 1.7E-12 80.9 7.3 47 7-54 300-346 (534)
401 PRK14495 putative molybdopteri 98.6 4.1E-08 8.8E-13 83.7 5.1 123 21-148 2-133 (452)
402 cd03285 ABC_MSH2_euk MutS2 hom 98.6 2.9E-08 6.2E-13 78.2 3.9 36 6-41 16-51 (222)
403 TIGR03238 dnd_assoc_3 dnd syst 98.6 2.6E-08 5.6E-13 85.7 3.5 45 8-54 20-65 (504)
404 cd03281 ABC_MSH5_euk MutS5 hom 98.6 1.9E-07 4.2E-12 73.0 7.6 36 7-42 16-51 (213)
405 PRK14723 flhF flagellar biosyn 98.6 3.2E-07 7E-12 83.2 9.6 127 9-151 174-305 (767)
406 cd03274 ABC_SMC4_euk Eukaryoti 98.6 4.6E-08 1E-12 76.5 3.8 34 3-41 13-46 (212)
407 cd03116 MobB Molybdenum is an 98.5 6.2E-08 1.3E-12 72.5 3.5 127 21-151 2-136 (159)
408 cd03279 ABC_sbcCD SbcCD and ot 98.5 2.6E-07 5.6E-12 72.2 7.0 32 11-42 18-50 (213)
409 smart00534 MUTSac ATPase domai 98.5 2.1E-07 4.5E-12 71.2 5.3 20 22-41 1-20 (185)
410 cd03286 ABC_MSH6_euk MutS6 hom 98.5 3.3E-07 7.1E-12 72.0 6.1 38 6-43 16-53 (218)
411 TIGR02788 VirB11 P-type DNA tr 98.4 4.8E-07 1E-11 74.6 6.8 43 13-55 137-179 (308)
412 KOG0060|consensus 98.4 1.2E-06 2.5E-11 76.6 9.4 49 6-54 447-495 (659)
413 PRK10416 signal recognition pa 98.4 2.2E-06 4.8E-11 71.0 10.1 39 18-56 112-152 (318)
414 COG4172 ABC-type uncharacteriz 98.4 6.1E-07 1.3E-11 75.6 6.7 51 5-55 21-76 (534)
415 PRK14722 flhF flagellar biosyn 98.4 1.6E-06 3.6E-11 73.1 9.1 48 8-55 125-176 (374)
416 COG5265 ATM1 ABC-type transpor 98.4 5.2E-07 1.1E-11 76.2 6.0 52 4-55 273-324 (497)
417 TIGR01069 mutS2 MutS2 family p 98.4 4.2E-07 9E-12 83.3 5.9 104 13-126 314-422 (771)
418 cd03227 ABC_Class2 ABC-type Cl 98.4 8.2E-07 1.8E-11 66.4 6.0 30 13-42 14-43 (162)
419 PF13555 AAA_29: P-loop contai 98.4 5.4E-07 1.2E-11 56.6 4.1 40 7-46 9-49 (62)
420 PRK14489 putative bifunctional 98.4 4.2E-07 9.1E-12 76.7 4.6 126 19-150 204-340 (366)
421 COG0378 HypB Ni2+-binding GTPa 98.4 9.6E-07 2.1E-11 67.6 6.1 114 21-152 14-130 (202)
422 PRK14491 putative bifunctional 98.3 4.7E-07 1E-11 80.8 4.7 123 19-147 9-144 (597)
423 PRK14494 putative molybdopteri 98.3 7.3E-07 1.6E-11 70.5 4.6 37 21-57 2-40 (229)
424 PRK07196 fliI flagellum-specif 98.3 2.2E-06 4.7E-11 73.6 7.7 43 5-48 141-183 (434)
425 KOG0054|consensus 98.3 9E-07 2E-11 84.5 5.8 54 2-55 529-582 (1381)
426 PRK14721 flhF flagellar biosyn 98.3 5.9E-06 1.3E-10 70.7 10.0 38 17-54 188-229 (420)
427 PRK06995 flhF flagellar biosyn 98.3 4.1E-06 8.8E-11 72.8 8.8 47 9-55 245-295 (484)
428 KOG2355|consensus 98.3 1E-06 2.2E-11 68.4 4.3 39 6-44 26-64 (291)
429 PRK14493 putative bifunctional 98.3 1.8E-06 3.8E-11 70.1 6.0 36 21-57 2-39 (274)
430 TIGR02858 spore_III_AA stage I 98.2 2.1E-06 4.5E-11 69.6 5.9 34 21-54 112-145 (270)
431 COG1245 Predicted ATPase, RNas 98.2 1.6E-06 3.4E-11 74.1 5.2 42 9-50 351-397 (591)
432 cd03271 ABC_UvrA_II The excisi 98.2 9.9E-07 2.2E-11 71.1 3.7 35 7-41 8-42 (261)
433 cd03276 ABC_SMC6_euk Eukaryoti 98.2 4.8E-06 1E-10 64.4 7.2 34 8-42 10-43 (198)
434 PRK14974 cell division protein 98.2 8.5E-06 1.8E-10 68.0 9.0 118 19-153 139-266 (336)
435 TIGR00235 udk uridine kinase. 98.2 1.3E-06 2.7E-11 67.9 3.6 36 18-53 4-39 (207)
436 COG4138 BtuD ABC-type cobalami 98.2 2.6E-06 5.7E-11 64.6 4.6 47 8-55 13-59 (248)
437 cd03114 ArgK-like The function 98.2 4E-06 8.6E-11 62.0 5.5 36 22-57 1-38 (148)
438 PRK06731 flhF flagellar biosyn 98.1 1.8E-05 3.9E-10 64.1 9.3 125 9-151 57-196 (270)
439 cd01131 PilT Pilus retraction 98.1 2.2E-05 4.8E-10 60.7 9.2 24 22-45 3-26 (198)
440 cd03239 ABC_SMC_head The struc 98.1 2.1E-05 4.6E-10 59.8 8.4 33 10-42 12-44 (178)
441 PRK05480 uridine/cytidine kina 98.1 4.2E-06 9.1E-11 65.0 4.6 37 18-54 4-40 (209)
442 PRK12726 flagellar biosynthesi 98.1 3.2E-05 7E-10 65.3 10.0 42 14-55 200-243 (407)
443 TIGR03499 FlhF flagellar biosy 98.1 1.6E-05 3.4E-10 64.8 7.9 39 18-56 192-234 (282)
444 PRK11889 flhF flagellar biosyn 98.1 2.4E-05 5.3E-10 66.4 9.0 37 19-55 240-278 (436)
445 TIGR00064 ftsY signal recognit 98.1 2.1E-05 4.6E-10 63.8 8.4 40 17-56 69-110 (272)
446 cd02023 UMPK Uridine monophosp 98.0 4.8E-06 1E-10 64.0 3.9 34 22-55 1-34 (198)
447 TIGR01420 pilT_fam pilus retra 98.0 3E-05 6.5E-10 64.9 8.6 27 18-44 120-146 (343)
448 PF00448 SRP54: SRP54-type pro 98.0 9.6E-06 2.1E-10 62.7 5.1 119 21-153 2-127 (196)
449 PRK10867 signal recognition pa 98.0 5.2E-05 1.1E-09 65.3 9.9 121 19-152 99-226 (433)
450 PRK10078 ribose 1,5-bisphospho 98.0 5.6E-06 1.2E-10 63.2 3.7 27 20-46 2-28 (186)
451 PRK09270 nucleoside triphospha 98.0 4.4E-06 9.5E-11 66.0 3.1 32 18-49 31-62 (229)
452 cd02025 PanK Pantothenate kina 98.0 5.7E-06 1.2E-10 65.1 3.6 23 22-44 1-23 (220)
453 PF03205 MobB: Molybdopterin g 98.0 8.4E-06 1.8E-10 59.7 4.1 37 21-57 1-39 (140)
454 KOG0064|consensus 98.0 9.4E-06 2E-10 70.6 4.6 44 5-48 493-536 (728)
455 PRK12723 flagellar biosynthesi 98.0 6.6E-05 1.4E-09 63.8 9.5 118 19-152 173-298 (388)
456 cd01136 ATPase_flagellum-secre 97.9 1.5E-05 3.3E-10 66.1 5.5 46 5-51 55-100 (326)
457 PRK14490 putative bifunctional 97.9 1.1E-05 2.4E-10 68.2 4.7 39 19-57 4-43 (369)
458 TIGR01425 SRP54_euk signal rec 97.9 6.1E-05 1.3E-09 64.7 9.3 119 19-153 99-226 (429)
459 TIGR00959 ffh signal recogniti 97.9 0.00013 2.9E-09 62.7 11.2 119 20-153 99-226 (428)
460 PRK13851 type IV secretion sys 97.9 3.7E-05 7.9E-10 64.4 7.6 32 16-47 158-189 (344)
461 PRK00300 gmk guanylate kinase; 97.9 9.3E-06 2E-10 62.6 3.6 29 17-45 2-30 (205)
462 PRK07721 fliI flagellum-specif 97.9 1.7E-05 3.7E-10 68.3 5.4 47 6-53 145-191 (438)
463 PRK09825 idnK D-gluconate kina 97.9 1.1E-05 2.3E-10 61.3 3.6 28 19-46 2-29 (176)
464 TIGR00630 uvra excinuclease AB 97.9 9.8E-06 2.1E-10 75.5 3.7 34 8-41 621-654 (924)
465 cd03115 SRP The signal recogni 97.9 7.9E-05 1.7E-09 56.0 8.0 115 22-151 2-124 (173)
466 cd01129 PulE-GspE PulE/GspE Th 97.9 9.3E-05 2E-09 59.8 8.8 26 19-44 79-104 (264)
467 TIGR02546 III_secr_ATP type II 97.9 2.5E-05 5.5E-10 67.1 5.7 48 5-53 131-178 (422)
468 PRK06793 fliI flagellum-specif 97.9 7.8E-05 1.7E-09 64.1 8.6 47 6-53 143-189 (432)
469 TIGR02322 phosphon_PhnN phosph 97.9 1.2E-05 2.6E-10 60.8 3.3 25 20-44 1-25 (179)
470 COG1129 MglA ABC-type sugar tr 97.9 5.1E-05 1.1E-09 66.0 7.5 48 8-55 273-320 (500)
471 PRK05703 flhF flagellar biosyn 97.9 9.1E-05 2E-09 63.8 9.0 39 17-55 218-260 (424)
472 PRK09099 type III secretion sy 97.9 3E-05 6.5E-10 66.8 5.9 48 5-53 149-196 (441)
473 PRK13894 conjugal transfer ATP 97.8 0.00012 2.6E-09 60.7 9.2 27 17-43 145-171 (319)
474 PRK06002 fliI flagellum-specif 97.8 2.2E-05 4.9E-10 67.6 5.0 48 5-53 151-198 (450)
475 PRK00771 signal recognition pa 97.8 0.00011 2.4E-09 63.4 9.2 119 19-153 94-219 (437)
476 cd02026 PRK Phosphoribulokinas 97.8 1.8E-05 3.8E-10 64.3 4.1 32 22-53 1-32 (273)
477 TIGR00554 panK_bact pantothena 97.8 1.7E-05 3.6E-10 64.9 4.0 27 18-44 60-86 (290)
478 PRK08149 ATP synthase SpaL; Va 97.8 2.4E-05 5.2E-10 67.1 4.9 43 5-48 137-179 (428)
479 PF00437 T2SE: Type II/IV secr 97.8 5E-05 1.1E-09 61.2 6.6 37 17-53 124-162 (270)
480 PRK12727 flagellar biosynthesi 97.8 0.0001 2.3E-09 64.7 8.8 39 17-55 347-389 (559)
481 PRK07594 type III secretion sy 97.8 2.4E-05 5.2E-10 67.2 4.8 46 5-51 141-186 (433)
482 TIGR03263 guanyl_kin guanylate 97.8 1.7E-05 3.7E-10 59.8 3.5 25 20-44 1-25 (180)
483 PF13476 AAA_23: AAA domain; P 97.8 1.6E-05 3.5E-10 60.4 3.2 33 9-42 9-41 (202)
484 cd03273 ABC_SMC2_euk Eukaryoti 97.8 1.9E-05 4.1E-10 63.1 3.8 24 20-43 25-48 (251)
485 PLN02796 D-glycerate 3-kinase 97.8 1.1E-05 2.4E-10 67.2 2.4 50 8-57 80-140 (347)
486 PRK08533 flagellar accessory p 97.8 7.7E-05 1.7E-09 59.1 7.0 37 17-53 21-59 (230)
487 PRK00349 uvrA excinuclease ABC 97.8 1.8E-05 3.9E-10 73.9 3.7 34 8-41 623-656 (943)
488 COG4170 SapD ABC-type antimicr 97.8 0.00014 3E-09 56.9 8.0 43 3-45 16-58 (330)
489 TIGR01026 fliI_yscN ATPase Fli 97.8 3.3E-05 7.2E-10 66.6 5.1 46 5-51 149-194 (440)
490 PRK00409 recombination and DNA 97.8 5.2E-05 1.1E-09 69.8 6.6 29 14-42 320-349 (782)
491 cd00879 Sar1 Sar1 subfamily. 97.8 1.1E-05 2.4E-10 61.2 1.9 34 9-43 9-42 (190)
492 TIGR00150 HI0065_YjeE ATPase, 97.8 2.3E-05 5E-10 56.9 3.5 28 17-44 19-46 (133)
493 PRK13833 conjugal transfer pro 97.8 0.00015 3.2E-09 60.2 8.6 26 19-44 143-168 (323)
494 PF13207 AAA_17: AAA domain; P 97.8 2.5E-05 5.3E-10 55.0 3.4 23 22-44 1-23 (121)
495 PRK08972 fliI flagellum-specif 97.8 3.5E-05 7.6E-10 66.2 4.8 41 6-47 149-189 (444)
496 COG2805 PilT Tfp pilus assembl 97.8 4E-05 8.7E-10 62.5 4.8 91 19-129 124-218 (353)
497 TIGR02782 TrbB_P P-type conjug 97.7 0.00015 3.4E-09 59.6 8.2 28 17-44 129-156 (299)
498 COG0194 Gmk Guanylate kinase [ 97.7 4.1E-05 8.9E-10 58.3 4.2 32 19-51 3-34 (191)
499 PF02367 UPF0079: Uncharacteri 97.7 3E-05 6.4E-10 55.5 3.2 28 17-44 12-39 (123)
500 PRK05922 type III secretion sy 97.7 5E-05 1.1E-09 65.3 5.1 45 6-51 144-188 (434)
No 1
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=100.00 E-value=2e-34 Score=236.81 Aligned_cols=147 Identities=49% Similarity=0.818 Sum_probs=122.9
Q ss_pred ccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCccccc-ceeEecCCCchhhhhhhhcCcceecccccchHHHH
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAME-KSVSVGDNGNLYEEWLELKNGCLCCSVKDNGVKAI 98 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~~~~-~~~~~~~~~~l~~~~~~l~~gci~~~~~~~~~~~l 98 (184)
.||+.|+||+||||||+|++|+....+.+++|++|||++.+++. ..+. ..+ ..+.++.|||+||+++++..+.+
T Consensus 1 ipVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~--~~~---e~~~El~nGCICCT~r~dl~~~~ 75 (323)
T COG0523 1 IPVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLS--DTG---EEVVELTNGCICCTVRDDLLPAL 75 (323)
T ss_pred CCEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccc--cCC---ccEEEeCCceEEEeccchhHHHH
Confidence 48999999999999999999999888899999999999988773 3332 111 35889999999999999999999
Q ss_pred HHHHHHcCCCCEEEEccCCCCCChhHHHHhhhccccCCceEeCcEEEEEcCCCccccCchHHHhhhhhhhhhhhhccchh
Q psy7718 99 ENLMLKRGKFDYILLETTGLADPGPIAKVFWLDKELGSDIYLDGIVTVVDCKHTIDVSFPDYFSIYLSILLSRLKELKVE 178 (184)
Q Consensus 99 ~~ll~~~~~~d~iiiE~tg~~dp~~i~~~l~~~~~~~~~~~l~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (184)
.++..+...||+|+|||||+++|.++++.+...+.+...++++++|+||||.++...-+ .+++...+
T Consensus 76 ~~L~~~~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~-------------~~~~~~~~ 142 (323)
T COG0523 76 ERLLRRRDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLD-------------AIAELAED 142 (323)
T ss_pred HHHHhccCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHH-------------HHHHHHHH
Confidence 99887556799999999999999999999987788999999999999999987654211 14555666
Q ss_pred hhccCC
Q psy7718 179 QVHFFN 184 (184)
Q Consensus 179 q~~~~~ 184 (184)
|++|||
T Consensus 143 Qia~AD 148 (323)
T COG0523 143 QLAFAD 148 (323)
T ss_pred HHHhCc
Confidence 666665
No 2
>KOG2743|consensus
Probab=100.00 E-value=2.8e-34 Score=228.55 Aligned_cols=138 Identities=75% Similarity=1.223 Sum_probs=126.1
Q ss_pred ecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcccccceeEecC-CCchhhhhhhhcCcceecccccchH
Q psy7718 17 LQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGD-NGNLYEEWLELKNGCLCCSVKDNGV 95 (184)
Q Consensus 17 v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~~gci~~~~~~~~~ 95 (184)
-.+.|+++|+||+|||||||++.++....+.+++|+.|+|++..-..+++...+ .+.+|+++.++.|||+||++++...
T Consensus 54 ~~rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk~~gv 133 (391)
T KOG2743|consen 54 GARIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVKDNGV 133 (391)
T ss_pred CCccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEecchHH
Confidence 456899999999999999999999988888999999999999665566665566 6778999999999999999999999
Q ss_pred HHHHHHHHHcCCCCEEEEccCCCCCChhHHHHhhhccccCCceEeCcEEEEEcCCCccc
Q psy7718 96 KAIENLMLKRGKFDYILLETTGLADPGPIAKVFWLDKELGSDIYLDGIVTVVDCKHTID 154 (184)
Q Consensus 96 ~~l~~ll~~~~~~d~iiiE~tg~~dp~~i~~~l~~~~~~~~~~~l~~vi~vvDa~~~~~ 154 (184)
++|+++..+.+++|+|++|+||+++|.|++.+|..+..+...+.|+++|+|||+++...
T Consensus 134 raie~lvqkkGkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~ 192 (391)
T KOG2743|consen 134 RAIENLVQKKGKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILK 192 (391)
T ss_pred HHHHHHHhcCCCcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHh
Confidence 99999998888999999999999999999999999999999999999999999998543
No 3
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=99.97 E-value=1.2e-31 Score=222.73 Aligned_cols=166 Identities=37% Similarity=0.578 Sum_probs=126.4
Q ss_pred cCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcccccceeEecC-CCchhhhhhhhcCcceecccccchHH
Q psy7718 18 QPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGD-NGNLYEEWLELKNGCLCCSVKDNGVK 96 (184)
Q Consensus 18 ~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~~gci~~~~~~~~~~ 96 (184)
.+.|++.|+||+||||||||++++....+.+++|+.||+++.+++...+.-.. .....+.+.++.|||+||++++++..
T Consensus 2 ~~ipv~iltGFLGaGKTTll~~ll~~~~~~~iavi~Ne~G~~~ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~~~dl~~ 81 (341)
T TIGR02475 2 AKIPVTIVTGFLGAGKTTLIRHLLQNAAGRRIAVIVNEFGDLGIDGEILKACGIEGCSEENIVELANGCICCTVADDFIP 81 (341)
T ss_pred CccCEEEEEECCCCCHHHHHHHHHhccCCCcEEEEECCCccccchHHHHhccccccCCcceEEEeCCCCccccCcHHHHH
Confidence 56899999999999999999999987677899999999998776654332110 00011357899999999999999999
Q ss_pred HHHHHHHHcCCCCEEEEccCCCCCChhHHHHhhhccccCCceEeCcEEEEEcCCCccccCch---HHHhhhh-----hhh
Q psy7718 97 AIENLMLKRGKFDYILLETTGLADPGPIAKVFWLDKELGSDIYLDGIVTVVDCKHTIDVSFP---DYFSIYL-----SIL 168 (184)
Q Consensus 97 ~l~~ll~~~~~~d~iiiE~tg~~dp~~i~~~l~~~~~~~~~~~l~~vi~vvDa~~~~~~~~~---~~~~~~~-----~~~ 168 (184)
+|.+++.+..+||+|+||+||+++|.++.+.+. .+.+...++++++|+|||+.++....+. +...... ...
T Consensus 82 ~l~~l~~~~~~~d~IvIEtsG~a~P~~i~~~~~-~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (341)
T TIGR02475 82 TMTKLLARRQRPDHILIETSGLALPKPLVQAFQ-WPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDH 160 (341)
T ss_pred HHHHHHhccCCCCEEEEeCCCCCCHHHHHHHhc-CccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccc
Confidence 999998656789999999999999999999984 4677888999999999999987643221 1111100 001
Q ss_pred hhhhhccchhhhccCC
Q psy7718 169 LSRLKELKVEQVHFFN 184 (184)
Q Consensus 169 ~~~~~~~~~~q~~~~~ 184 (184)
.+.+.+...+|++|||
T Consensus 161 ~~~~~~~~~~Qi~~AD 176 (341)
T TIGR02475 161 ETPLEELFEDQLACAD 176 (341)
T ss_pred cchHHHHHHHHHHhCC
Confidence 2345567778888886
No 4
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=99.97 E-value=5.6e-31 Score=216.80 Aligned_cols=133 Identities=44% Similarity=0.753 Sum_probs=113.2
Q ss_pred ecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcccccceeEecCCCchhhhhhhhcCcceecccccchHH
Q psy7718 17 LQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLELKNGCLCCSVKDNGVK 96 (184)
Q Consensus 17 v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~gci~~~~~~~~~~ 96 (184)
|++.|+++|+||+||||||||++++....+.+++|+.||+++.+++...+. +.. ..+.+++|||+||++++++..
T Consensus 1 ~~~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~iD~~ll~--~~~---~~v~eL~~GCiCCs~~~~l~~ 75 (318)
T PRK11537 1 MNPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIG--DRA---TQIKTLTNGCICCSRSNELED 75 (318)
T ss_pred CCccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCccccHHHHh--CcC---ceEEEECCCEEEEccCchHHH
Confidence 467899999999999999999999987777899999999998776554332 111 247789999999999999999
Q ss_pred HHHHHHHHc----CCCCEEEEccCCCCCChhHHHHhhhccccCCceEeCcEEEEEcCCCccc
Q psy7718 97 AIENLMLKR----GKFDYILLETTGLADPGPIAKVFWLDKELGSDIYLDGIVTVVDCKHTID 154 (184)
Q Consensus 97 ~l~~ll~~~----~~~d~iiiE~tg~~dp~~i~~~l~~~~~~~~~~~l~~vi~vvDa~~~~~ 154 (184)
++.+++.+. .+||+|+||+||+++|.++.+.+...+.+...++++++|+|||+.++..
T Consensus 76 ~l~~l~~~~~~~~~~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~ 137 (318)
T PRK11537 76 ALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADE 137 (318)
T ss_pred HHHHHHHHHhccCCCCCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhh
Confidence 999987532 2699999999999999999998866678889999999999999988664
No 5
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=99.96 E-value=1e-29 Score=193.77 Aligned_cols=124 Identities=44% Similarity=0.791 Sum_probs=99.6
Q ss_pred cEEEEEecCCChHHHHHHHHH-hcCCCCeEEEEecccCCcccccceeEecCCCchhhhhhhhcCcceecccccchHHHHH
Q psy7718 21 PVTIITGYLGAGKTTLLNYIL-TEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLELKNGCLCCSVKDNGVKAIE 99 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~-~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~gci~~~~~~~~~~~l~ 99 (184)
|++.|+||+||||||||+.++ ....+.+++|+.||+++.+++...+. +.+ ..+.++.|||+||++++++...+.
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~--~~~---~~v~~l~~gcicc~~~~~~~~~l~ 75 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQ--EDG---VPVVELNNGCICCTLRDDLVEALR 75 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHH--TTT----EEEEECTTTESS-TTS-HHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhc--ccc---eEEEEecCCCcccccHHHHHHHHH
Confidence 799999999999999999999 56688899999999998776554332 111 237789999999999999999999
Q ss_pred HHHHHcC--CCCEEEEccCCCCCChhHHHHhhhccccCCceEeCcEEEEEcCCCcc
Q psy7718 100 NLMLKRG--KFDYILLETTGLADPGPIAKVFWLDKELGSDIYLDGIVTVVDCKHTI 153 (184)
Q Consensus 100 ~ll~~~~--~~d~iiiE~tg~~dp~~i~~~l~~~~~~~~~~~l~~vi~vvDa~~~~ 153 (184)
++.. .+ +||+|+||++|+++|.++ ++. .+.+...+.++.+|+||||.+|.
T Consensus 76 ~l~~-~~~~~~d~IiIE~sG~a~p~~l--~~~-~~~~~~~~~~~~iI~vVDa~~~~ 127 (178)
T PF02492_consen 76 RLLR-EYEERPDRIIIETSGLADPAPL--ILQ-DPPLKEDFRLDSIITVVDATNFD 127 (178)
T ss_dssp HHCC-CCHGC-SEEEEEEECSSGGGGH--HHH-SHHHHHHESESEEEEEEEGTTHG
T ss_pred HHHH-hcCCCcCEEEECCccccccchh--hhc-cccccccccccceeEEecccccc
Confidence 9874 45 799999999999999999 332 66777889999999999998874
No 6
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=99.95 E-value=1.8e-27 Score=178.10 Aligned_cols=145 Identities=50% Similarity=0.841 Sum_probs=115.9
Q ss_pred cEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcccccceeEecCCCchhhhhhhhcCcceecccccchHHHHHH
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLELKNGCLCCSVKDNGVKAIEN 100 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~gci~~~~~~~~~~~l~~ 100 (184)
|++.++||+|||||||++.+++...+.++.++.++++...++...+. +.+ ..+.++.|||+||++++++..++.+
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~~~~~~~~~i~~~~G~~~~d~~~~~--~~~---~~v~~l~~GCiCC~~~~~l~~~l~~ 75 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTEQHGRKIAVIENEFGEVGIDNQLVV--DTD---EEIIEMNNGCICCTVRGDLIRALLD 75 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhcccCCcEEEEecCCCccchhHHHHh--CCC---ceEEEeCCCEeEeeCchhHHHHHHH
Confidence 68999999999999999999987777889999999988766544332 111 2467899999999999998888865
Q ss_pred HHH----HcCCCCEEEEccCCCCCChhHHHHhhhccccCCceEeCcEEEEEcCCCccccCchHHHhhhhhhhhhhhhccc
Q psy7718 101 LML----KRGKFDYILLETTGLADPGPIAKVFWLDKELGSDIYLDGIVTVVDCKHTIDVSFPDYFSIYLSILLSRLKELK 176 (184)
Q Consensus 101 ll~----~~~~~d~iiiE~tg~~dp~~i~~~l~~~~~~~~~~~l~~vi~vvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (184)
++. +..+||+|++|++|+++|.++.+.+...+.+...++++.++++||+.+|.. ++.+ .+..
T Consensus 76 l~~~~~~~~~~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~-----~~~~---------~~~~ 141 (158)
T cd03112 76 LLERLDAGKIAFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQ-----HLDQ---------QTEA 141 (158)
T ss_pred HHHHHHhccCCCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHH-----Hhhc---------cHHH
Confidence 543 246899999999999999999987655667788899999999999976554 2221 2456
Q ss_pred hhhhccCC
Q psy7718 177 VEQVHFFN 184 (184)
Q Consensus 177 ~~q~~~~~ 184 (184)
.+|+++||
T Consensus 142 ~~Qi~~ad 149 (158)
T cd03112 142 QSQIAFAD 149 (158)
T ss_pred HHHHHHCC
Confidence 88999887
No 7
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.81 E-value=4.4e-20 Score=142.05 Aligned_cols=133 Identities=24% Similarity=0.193 Sum_probs=99.8
Q ss_pred CCCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCC------cccccceeEecCCCchhh
Q psy7718 3 SDSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGE------GSAMEKSVSVGDNGNLYE 76 (184)
Q Consensus 3 ~~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~l~~ 76 (184)
+|++..||++|||++.+|++++|+||+|||||||||+|.++..+.+|.|.+++... ....++...++|...+++
T Consensus 11 ~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFP 90 (240)
T COG1126 11 SFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFP 90 (240)
T ss_pred EeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccc
Confidence 57788999999999999999999999999999999999999888889888876321 112334557899999999
Q ss_pred hhhhhcCcceecc-cccc----hHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCCh
Q psy7718 77 EWLELKNGCLCCS-VKDN----GVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPG 122 (184)
Q Consensus 77 ~~~~l~~gci~~~-~~~~----~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~ 122 (184)
+++.++|.++... .++. ..+.-.+++++ .-+|++++. |||..+||+
T Consensus 91 HlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPE 170 (240)
T COG1126 91 HLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPE 170 (240)
T ss_pred cchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHH
Confidence 9999999775532 2211 11111122221 147999999 999999999
Q ss_pred hHHHHhhhccccC
Q psy7718 123 PIAKVFWLDKELG 135 (184)
Q Consensus 123 ~i~~~l~~~~~~~ 135 (184)
-+.+++.....++
T Consensus 171 lv~EVL~vm~~LA 183 (240)
T COG1126 171 LVGEVLDVMKDLA 183 (240)
T ss_pred HHHHHHHHHHHHH
Confidence 8888776544443
No 8
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.77 E-value=7.5e-19 Score=143.57 Aligned_cols=125 Identities=22% Similarity=0.198 Sum_probs=99.0
Q ss_pred CC-CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc----ccccceeEecCCCchhhhh
Q psy7718 4 DS-DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG----SAMEKSVSVGDNGNLYEEW 78 (184)
Q Consensus 4 ~~-~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~l~~~~ 78 (184)
++ ++.+|++|||++++|++++++|+||||||||+|+|++...|.+|.|..++.... ....+..++.|.+.+++.+
T Consensus 14 ~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~l 93 (293)
T COG1131 14 YGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPEL 93 (293)
T ss_pred eCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccc
Confidence 45 578999999999999999999999999999999999999888898888764322 2334566899999999999
Q ss_pred hhhcCcceecccccch----HHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHH
Q psy7718 79 LELKNGCLCCSVKDNG----VKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIA 125 (184)
Q Consensus 79 ~~l~~gci~~~~~~~~----~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~ 125 (184)
+..++.-+.+.+++.. ...+.++++. .++|+++++ |||.+.||....
T Consensus 94 T~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~ 173 (293)
T COG1131 94 TVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRR 173 (293)
T ss_pred cHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHH
Confidence 9999988877766422 2234444332 178999999 999999998766
Q ss_pred HHh
Q psy7718 126 KVF 128 (184)
Q Consensus 126 ~~l 128 (184)
++.
T Consensus 174 ~~~ 176 (293)
T COG1131 174 EIW 176 (293)
T ss_pred HHH
Confidence 544
No 9
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.77 E-value=1e-18 Score=136.40 Aligned_cols=147 Identities=20% Similarity=0.181 Sum_probs=107.0
Q ss_pred CCCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc--------ccccceeEecCCCch
Q psy7718 3 SDSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG--------SAMEKSVSVGDNGNL 74 (184)
Q Consensus 3 ~~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~--------~~~~~~~~~~~~~~l 74 (184)
+.+++.++++|+|++.+|++++|+|++|||||||+|.++++.+|.+|.|..+...-. .+..+...++|.+++
T Consensus 17 ~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gAL 96 (263)
T COG1127 17 SFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGAL 96 (263)
T ss_pred ecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeecccc
Confidence 456788999999999999999999999999999999999999999999888653321 223445689999999
Q ss_pred hhhhhhhcCcceecc----cccchH--------------------------------HHHHHHHHHcCCCCEEEE-ccCC
Q psy7718 75 YEEWLELKNGCLCCS----VKDNGV--------------------------------KAIENLMLKRGKFDYILL-ETTG 117 (184)
Q Consensus 75 ~~~~~~l~~gci~~~----~~~~~~--------------------------------~~l~~ll~~~~~~d~iii-E~tg 117 (184)
+..++.++|..+--. +.+... .+|++.+ .-+|++++. |||.
T Consensus 97 FssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAi--aldPell~~DEPts 174 (263)
T COG1127 97 FSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAI--ALDPELLFLDEPTS 174 (263)
T ss_pred ccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHH--hcCCCEEEecCCCC
Confidence 999999999765321 111111 1222222 147999999 9999
Q ss_pred CCCChhHHHHhhhccccCCceEeCcEEEEEcCCC
Q psy7718 118 LADPGPIAKVFWLDKELGSDIYLDGIVTVVDCKH 151 (184)
Q Consensus 118 ~~dp~~i~~~l~~~~~~~~~~~l~~vi~vvDa~~ 151 (184)
+.||-....+-.....+.+.+.+..+++.+|-.+
T Consensus 175 GLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s 208 (263)
T COG1127 175 GLDPISAGVIDELIRELNDALGLTVIMVTHDLDS 208 (263)
T ss_pred CCCcchHHHHHHHHHHHHHhhCCEEEEEECChHH
Confidence 9999866554333345555566666777777544
No 10
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.76 E-value=3.3e-18 Score=134.46 Aligned_cols=121 Identities=20% Similarity=0.121 Sum_probs=93.6
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcccccceeEecCCCchhhhhhhhcC
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLELKN 83 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 83 (184)
+....+|+||||++.+|++++|+||+|+|||||+|.++|..++..|.|..++..-.....+..+++|+..++++.+.++|
T Consensus 13 f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~N 92 (248)
T COG1116 13 FGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDN 92 (248)
T ss_pred eCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhh
Confidence 45578999999999999999999999999999999999999999998887654333445567789999999999999999
Q ss_pred cceeccccc----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhH
Q psy7718 84 GCLCCSVKD----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPI 124 (184)
Q Consensus 84 gci~~~~~~----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i 124 (184)
..+.-...+ .......++++. ...|+++++ ||.|..|+...
T Consensus 93 V~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR 166 (248)
T COG1116 93 VALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTR 166 (248)
T ss_pred heehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHH
Confidence 876543321 111122232221 168999999 99999997643
No 11
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.73 E-value=1.3e-17 Score=130.39 Aligned_cols=143 Identities=26% Similarity=0.159 Sum_probs=97.1
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc--------cc-ccceeEecCCCchhhh
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG--------SA-MEKSVSVGDNGNLYEE 77 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~--------~~-~~~~~~~~~~~~l~~~ 77 (184)
..+|++|||++++|+.++|+||+|||||||++.|.+..+|.++.|..++..-. .+ .....+++|...+.+.
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ 97 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPD 97 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCC
Confidence 47999999999999999999999999999999999998888888887652211 11 1235589999999999
Q ss_pred hhhhcCcceecccccc----hHHHHHHHHHH-----------------------------cCCCCEEEE-ccCCCCCChh
Q psy7718 78 WLELKNGCLCCSVKDN----GVKAIENLMLK-----------------------------RGKFDYILL-ETTGLADPGP 123 (184)
Q Consensus 78 ~~~l~~gci~~~~~~~----~~~~l~~ll~~-----------------------------~~~~d~iii-E~tg~~dp~~ 123 (184)
++.++|..+-+.+.+. ...+...++.. ..+|++|+. ||||-+|+..
T Consensus 98 ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t 177 (226)
T COG1136 98 LTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKT 177 (226)
T ss_pred CCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHH
Confidence 9999998753322111 11111121111 268999999 9999999876
Q ss_pred HHHHhhhccccCCceEeCcEEEEEcC
Q psy7718 124 IAKVFWLDKELGSDIYLDGIVTVVDC 149 (184)
Q Consensus 124 i~~~l~~~~~~~~~~~l~~vi~vvDa 149 (184)
-.+++..-..+.+...-.-+++++|.
T Consensus 178 ~~~V~~ll~~~~~~~g~tii~VTHd~ 203 (226)
T COG1136 178 AKEVLELLRELNKERGKTIIMVTHDP 203 (226)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 55544322233322222235566665
No 12
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.72 E-value=1e-17 Score=131.96 Aligned_cols=158 Identities=18% Similarity=0.151 Sum_probs=116.5
Q ss_pred CCCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcc-----cccceeEecCCCchhhh
Q psy7718 3 SDSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGS-----AMEKSVSVGDNGNLYEE 77 (184)
Q Consensus 3 ~~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~-----~~~~~~~~~~~~~l~~~ 77 (184)
.|.++.+++++||++++|+.++++|++||||||++|++.+...|.+|.|..++..-.. ..++..++.|...++++
T Consensus 10 ~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh 89 (309)
T COG1125 10 RYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPH 89 (309)
T ss_pred hcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCC
Confidence 4678899999999999999999999999999999999999999999999887654322 23445578888888999
Q ss_pred hhhhcCcceeccccc----chHHHHHHHHHH------------------------------cCCCCEEEE-ccCCCCCCh
Q psy7718 78 WLELKNGCLCCSVKD----NGVKAIENLMLK------------------------------RGKFDYILL-ETTGLADPG 122 (184)
Q Consensus 78 ~~~l~~gci~~~~~~----~~~~~l~~ll~~------------------------------~~~~d~iii-E~tg~~dp~ 122 (184)
++..+|.+++..+.+ .......+++.. ...|.+++. ||.|..||-
T Consensus 90 ~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI 169 (309)
T COG1125 90 LTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPI 169 (309)
T ss_pred ccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChh
Confidence 999999999887653 222334444331 157889999 999999997
Q ss_pred hHHHHh----hhcc-----------ccCCceEeCcEEEEEcCCCccccCchHH
Q psy7718 123 PIAKVF----WLDK-----------ELGSDIYLDGIVTVVDCKHTIDVSFPDY 160 (184)
Q Consensus 123 ~i~~~l----~~~~-----------~~~~~~~l~~vi~vvDa~~~~~~~~~~~ 160 (184)
...++- .... +..+.+++..-|++.|.....+...|+-
T Consensus 170 ~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~ 222 (309)
T COG1125 170 TRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDE 222 (309)
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHH
Confidence 544321 1111 2234466777788888877766554433
No 13
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.72 E-value=3.7e-17 Score=123.69 Aligned_cols=124 Identities=20% Similarity=0.191 Sum_probs=93.0
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc-------ccc-cceeEecCCCchhh
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG-------SAM-EKSVSVGDNGNLYE 76 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~-------~~~-~~~~~~~~~~~l~~ 76 (184)
.++++|+||||++++|+.+-++||+|||||||||.|.+..+|.+|.|.++++.-. ... ++...++|+..+..
T Consensus 13 ~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~ 92 (223)
T COG2884 13 GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLP 92 (223)
T ss_pred CCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccc
Confidence 3466999999999999999999999999999999999999999999999876532 222 33457899998888
Q ss_pred hhhhhcCcceecccccchHH----HHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChh
Q psy7718 77 EWLELKNGCLCCSVKDNGVK----AIENLMLK----------------------------RGKFDYILL-ETTGLADPGP 123 (184)
Q Consensus 77 ~~~~l~~gci~~~~~~~~~~----~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~ 123 (184)
..+.++|..+.-...+.... .+.+.++. .++|++++. ||||-.||.-
T Consensus 93 ~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~ 172 (223)
T COG2884 93 DRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDL 172 (223)
T ss_pred cchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHH
Confidence 88889987655433322211 22222221 278999999 9999999975
Q ss_pred HHHHh
Q psy7718 124 IAKVF 128 (184)
Q Consensus 124 i~~~l 128 (184)
-.+++
T Consensus 173 s~~im 177 (223)
T COG2884 173 SWEIM 177 (223)
T ss_pred HHHHH
Confidence 44444
No 14
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.71 E-value=1.3e-17 Score=132.92 Aligned_cols=145 Identities=19% Similarity=0.098 Sum_probs=91.5
Q ss_pred CCCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCC-----cccccceeEecCCCchhhh
Q psy7718 3 SDSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGE-----GSAMEKSVSVGDNGNLYEE 77 (184)
Q Consensus 3 ~~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~l~~~ 77 (184)
+|+++.+++++||++++|++++|+||||||||||+|.|.+..+|.+|.|..++..- ....+...++.|.......
T Consensus 11 ~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~ 90 (258)
T COG1120 11 GYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFG 90 (258)
T ss_pred EECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCC
Confidence 46789999999999999999999999999999999999999998888888865321 1122233344444222111
Q ss_pred hhhhcCcc--------eecccc------------------------------cchHHHHHHHHHHcCCCCEEEE-ccCCC
Q psy7718 78 WLELKNGC--------LCCSVK------------------------------DNGVKAIENLMLKRGKFDYILL-ETTGL 118 (184)
Q Consensus 78 ~~~l~~gc--------i~~~~~------------------------------~~~~~~l~~ll~~~~~~d~iii-E~tg~ 118 (184)
+++.+-.. ..-... +.....+++.+ ..+|+++++ |||..
T Consensus 91 ~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArAL--aQ~~~iLLLDEPTs~ 168 (258)
T COG1120 91 LTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARAL--AQETPILLLDEPTSH 168 (258)
T ss_pred cEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHH--hcCCCEEEeCCCccc
Confidence 11111000 000000 11112233333 268999999 99999
Q ss_pred CCChhHHHHhhhccccCCceEeCcEEEEEcC
Q psy7718 119 ADPGPIAKVFWLDKELGSDIYLDGIVTVVDC 149 (184)
Q Consensus 119 ~dp~~i~~~l~~~~~~~~~~~l~~vi~vvDa 149 (184)
.|+..-.+++..-..+.+.-.+.-+++++|.
T Consensus 169 LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDl 199 (258)
T COG1120 169 LDIAHQIEVLELLRDLNREKGLTVVMVLHDL 199 (258)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 9998777766544444443334456777775
No 15
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.70 E-value=3.4e-17 Score=134.59 Aligned_cols=125 Identities=22% Similarity=0.096 Sum_probs=90.2
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc----ccccceeEecCCCchhhhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG----SAMEKSVSVGDNGNLYEEWL 79 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~l~~~~~ 79 (184)
|.+..+|++|||++++|++++|+|+||||||||++.|+|...|.+|.|..++..-. .......+++|+..++..++
T Consensus 17 ~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 96 (306)
T PRK13537 17 YGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFT 96 (306)
T ss_pred ECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCc
Confidence 34567999999999999999999999999999999999998888888877654321 12234557888877777777
Q ss_pred hhcCcceecccccc----hHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHHH
Q psy7718 80 ELKNGCLCCSVKDN----GVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIAK 126 (184)
Q Consensus 80 ~l~~gci~~~~~~~----~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~~ 126 (184)
..+|..+.+.+++. ....+.++++. .++|+++++ |||.+.||....+
T Consensus 97 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~ 176 (306)
T PRK13537 97 VRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHL 176 (306)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHH
Confidence 77776544433211 11122222221 278999999 9999999987665
Q ss_pred Hh
Q psy7718 127 VF 128 (184)
Q Consensus 127 ~l 128 (184)
+.
T Consensus 177 l~ 178 (306)
T PRK13537 177 MW 178 (306)
T ss_pred HH
Confidence 43
No 16
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.69 E-value=2.4e-17 Score=129.09 Aligned_cols=122 Identities=19% Similarity=0.140 Sum_probs=91.0
Q ss_pred CCCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc-ccccceeEecCCCchhhhhhhh
Q psy7718 3 SDSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG-SAMEKSVSVGDNGNLYEEWLEL 81 (184)
Q Consensus 3 ~~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~-~~~~~~~~~~~~~~l~~~~~~l 81 (184)
+.+++.+++|+||++++|++++++|+|||||||++|+|++...++.|.|-.++-.-. ....+..+++.+..+|+.++..
T Consensus 11 ~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~ 90 (300)
T COG4152 11 SFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVE 90 (300)
T ss_pred ccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHH
Confidence 456788999999999999999999999999999999999998888887776553322 2223455677777788888777
Q ss_pred cCcceecccccchH----HHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhH
Q psy7718 82 KNGCLCCSVKDNGV----KAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPI 124 (184)
Q Consensus 82 ~~gci~~~~~~~~~----~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i 124 (184)
+-..+...+++... ..+...+++ .+.|+++|+ ||..+.||-+.
T Consensus 91 dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~ 166 (300)
T COG4152 91 DQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNV 166 (300)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhH
Confidence 76666666554322 222222222 289999999 99999999754
No 17
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.69 E-value=1.4e-16 Score=126.44 Aligned_cols=53 Identities=23% Similarity=0.204 Sum_probs=47.5
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEeccc
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEF 56 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~ 56 (184)
|+.+++|+||||++.+|++++|+||||||||||+|.++|..+|.+|.|.....
T Consensus 14 y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~ 66 (254)
T COG1121 14 YGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGK 66 (254)
T ss_pred ECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccc
Confidence 44337999999999999999999999999999999999999999998887554
No 18
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.69 E-value=4.9e-17 Score=133.43 Aligned_cols=124 Identities=19% Similarity=0.092 Sum_probs=85.9
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCC--c--ccccceeEecCCCchhhhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGE--G--SAMEKSVSVGDNGNLYEEWL 79 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~--~--~~~~~~~~~~~~~~l~~~~~ 79 (184)
|+++.+|+++||++.+|++++|+|+||||||||+++|+|..+|.+|.|..++..- . .......+++|...++..++
T Consensus 3 y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 3 YGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred eCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 4567899999999999999999999999999999999999888888888765321 1 11123446777776766666
Q ss_pred hhcCcceeccccc----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHHH
Q psy7718 80 ELKNGCLCCSVKD----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIAK 126 (184)
Q Consensus 80 ~l~~gci~~~~~~----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~~ 126 (184)
..+|..+.+..++ .....+.++++. ..+|+++++ ||+...||....+
T Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~ 162 (302)
T TIGR01188 83 GRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRA 162 (302)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHH
Confidence 6666543322211 011112222211 268999999 9999999986554
Q ss_pred H
Q psy7718 127 V 127 (184)
Q Consensus 127 ~ 127 (184)
+
T Consensus 163 l 163 (302)
T TIGR01188 163 I 163 (302)
T ss_pred H
Confidence 4
No 19
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=7.5e-17 Score=126.41 Aligned_cols=123 Identities=17% Similarity=0.082 Sum_probs=80.7
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcccccceeEecCCCchhhhhhhhcCcce
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLELKNGCL 86 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~gci 86 (184)
+.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..-........+++|...++...+..+|..+
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 96 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVAL 96 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHH
Confidence 57999999999999999999999999999999999998888888876543211111233456666555544444444433
Q ss_pred eccccc----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHHHHhh
Q psy7718 87 CCSVKD----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIAKVFW 129 (184)
Q Consensus 87 ~~~~~~----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~~~l~ 129 (184)
.+..++ .....+.+++++ ..+|+++++ ||+...||....+++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~ 172 (220)
T cd03293 97 GLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQE 172 (220)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHH
Confidence 221110 001111111110 258999999 9999999987666543
No 20
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.68 E-value=5e-17 Score=135.36 Aligned_cols=125 Identities=18% Similarity=0.056 Sum_probs=88.7
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc----ccccceeEecCCCchhhhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG----SAMEKSVSVGDNGNLYEEWL 79 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~l~~~~~ 79 (184)
+.++.+|++|||++.+|++++|+|+||||||||++.|+|...|.+|.|..++..-. .......+++|...++..++
T Consensus 51 y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 130 (340)
T PRK13536 51 YGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFT 130 (340)
T ss_pred ECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCc
Confidence 44567999999999999999999999999999999999998888898887654211 11233456778777776676
Q ss_pred hhcCcceecccccc----hHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHHH
Q psy7718 80 ELKNGCLCCSVKDN----GVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIAK 126 (184)
Q Consensus 80 ~l~~gci~~~~~~~----~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~~ 126 (184)
..+|..+.+..++. ....+.++++. ..+|+++++ ||+.+.||....+
T Consensus 131 v~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~ 210 (340)
T PRK13536 131 VRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHL 210 (340)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHH
Confidence 77766544332211 11112222221 268999999 9999999987655
Q ss_pred Hh
Q psy7718 127 VF 128 (184)
Q Consensus 127 ~l 128 (184)
+.
T Consensus 211 l~ 212 (340)
T PRK13536 211 IW 212 (340)
T ss_pred HH
Confidence 43
No 21
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.68 E-value=6.5e-17 Score=123.49 Aligned_cols=123 Identities=21% Similarity=0.066 Sum_probs=93.0
Q ss_pred CCCCCC-CCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc----ccccceeEecCCCchhhh
Q psy7718 3 SDSDSE-VPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG----SAMEKSVSVGDNGNLYEE 77 (184)
Q Consensus 3 ~~~~~~-~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~l~~~ 77 (184)
||.... ++++|||++.+|+|+++.|+|||||||++|+|.+...|.+|.|..+.+... .+.+....++....+|..
T Consensus 10 ~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~R 89 (245)
T COG4555 10 SYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYAR 89 (245)
T ss_pred hccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhh
Confidence 344444 899999999999999999999999999999999999999999999877653 233444456666678999
Q ss_pred hhhhcCcceecccccc----hHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhH
Q psy7718 78 WLELKNGCLCCSVKDN----GVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPI 124 (184)
Q Consensus 78 ~~~l~~gci~~~~~~~----~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i 124 (184)
++..+|..++..+.+- ....++++.++ .++|+.+++ ||+.+.|.-..
T Consensus 90 lT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~ 169 (245)
T COG4555 90 LTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTR 169 (245)
T ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHH
Confidence 9999998877655432 22333333221 178999999 99999997644
Q ss_pred H
Q psy7718 125 A 125 (184)
Q Consensus 125 ~ 125 (184)
.
T Consensus 170 r 170 (245)
T COG4555 170 R 170 (245)
T ss_pred H
Confidence 3
No 22
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.67 E-value=2e-16 Score=120.31 Aligned_cols=123 Identities=20% Similarity=0.153 Sum_probs=85.3
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc-------ccccceeEecCCCchhhh
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG-------SAMEKSVSVGDNGNLYEE 77 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~-------~~~~~~~~~~~~~~l~~~ 77 (184)
.++++++++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..-. .......+++|...++..
T Consensus 11 ~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (178)
T cd03229 11 GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPH 90 (178)
T ss_pred CCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCC
Confidence 3467999999999999999999999999999999999998888888877553211 111223356676555555
Q ss_pred hhhhcCcceecccccchHHHHHHHHHHcCCCCEEEE-ccCCCCCChhHHHHhh
Q psy7718 78 WLELKNGCLCCSVKDNGVKAIENLMLKRGKFDYILL-ETTGLADPGPIAKVFW 129 (184)
Q Consensus 78 ~~~l~~gci~~~~~~~~~~~l~~ll~~~~~~d~iii-E~tg~~dp~~i~~~l~ 129 (184)
.+..+|.+..-+......-.+.+.+ ..+|+++++ ||+...||.....++.
T Consensus 91 ~t~~~~l~~~lS~G~~qr~~la~al--~~~p~llilDEP~~~LD~~~~~~l~~ 141 (178)
T cd03229 91 LTVLENIALGLSGGQQQRVALARAL--AMDPDVLLLDEPTSALDPITRREVRA 141 (178)
T ss_pred CCHHHheeecCCHHHHHHHHHHHHH--HCCCCEEEEeCCcccCCHHHHHHHHH
Confidence 5555554432111122223455554 358999999 9999999987666543
No 23
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.67 E-value=8.1e-17 Score=133.45 Aligned_cols=145 Identities=18% Similarity=0.115 Sum_probs=99.2
Q ss_pred CCCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc--c-cccceeEecCCCchhhhhh
Q psy7718 3 SDSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG--S-AMEKSVSVGDNGNLYEEWL 79 (184)
Q Consensus 3 ~~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~--~-~~~~~~~~~~~~~l~~~~~ 79 (184)
+|++..+++|+||++.+|+++.+.|||||||||+||+|+|...|.+|.|..++..-. . ..+....++|+.+++++++
T Consensus 14 ~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHlt 93 (352)
T COG3842 14 SFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMT 93 (352)
T ss_pred ecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCc
Confidence 466788999999999999999999999999999999999999999998888654322 2 2334557999999999999
Q ss_pred hhcCcceeccccc-----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHH
Q psy7718 80 ELKNGCLCCSVKD-----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIA 125 (184)
Q Consensus 80 ~l~~gci~~~~~~-----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~ 125 (184)
..+|..+--.++. +....+.++++. ...|+++++ ||-+..| ..+.
T Consensus 94 V~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD-~kLR 172 (352)
T COG3842 94 VEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALD-AKLR 172 (352)
T ss_pred HHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchh-HHHH
Confidence 9999654332111 111223332221 157999998 9999999 4444
Q ss_pred HHhhh-ccccCCceEeCcEEEEEc
Q psy7718 126 KVFWL-DKELGSDIYLDGIVTVVD 148 (184)
Q Consensus 126 ~~l~~-~~~~~~~~~l~~vi~vvD 148 (184)
+-++. ...+.+..-+.-+.+++|
T Consensus 173 ~~mr~Elk~lq~~~giT~i~VTHD 196 (352)
T COG3842 173 EQMRKELKELQRELGITFVYVTHD 196 (352)
T ss_pred HHHHHHHHHHHHhcCCeEEEEECC
Confidence 43321 122222333444455555
No 24
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.66 E-value=2.5e-16 Score=123.20 Aligned_cols=123 Identities=21% Similarity=0.114 Sum_probs=81.9
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcc--------c-ccceeEecCCCchhhh
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGS--------A-MEKSVSVGDNGNLYEE 77 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~--------~-~~~~~~~~~~~~l~~~ 77 (184)
+.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..-.. . .....+++|...++..
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPD 96 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCC
Confidence 579999999999999999999999999999999999988888888776432111 0 1223456666555555
Q ss_pred hhhhcCcceeccccc----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhH
Q psy7718 78 WLELKNGCLCCSVKD----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPI 124 (184)
Q Consensus 78 ~~~l~~gci~~~~~~----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i 124 (184)
++..+|.++.+..++ .....+.+++.. ..+|+++++ ||+...||...
T Consensus 97 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~ 176 (218)
T cd03255 97 LTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETG 176 (218)
T ss_pred CcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHH
Confidence 455555443221111 001111121111 268999999 99999999876
Q ss_pred HHHhh
Q psy7718 125 AKVFW 129 (184)
Q Consensus 125 ~~~l~ 129 (184)
..+..
T Consensus 177 ~~l~~ 181 (218)
T cd03255 177 KEVME 181 (218)
T ss_pred HHHHH
Confidence 65543
No 25
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=2.3e-16 Score=123.03 Aligned_cols=126 Identities=15% Similarity=0.094 Sum_probs=81.8
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccC--Ccc-cccceeEecCCCchhhhhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFG--EGS-AMEKSVSVGDNGNLYEEWLE 80 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~--~~~-~~~~~~~~~~~~~l~~~~~~ 80 (184)
+.++.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++.. ... ......+++|...++...+.
T Consensus 10 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 89 (213)
T cd03259 10 YGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTV 89 (213)
T ss_pred eCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcH
Confidence 345679999999999999999999999999999999999988888888765431 111 11223456666555444444
Q ss_pred hcCcceecccc----cchHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHHHH
Q psy7718 81 LKNGCLCCSVK----DNGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIAKV 127 (184)
Q Consensus 81 l~~gci~~~~~----~~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~~~ 127 (184)
.+|.++..... ......+.+++.+ ..+|+++++ ||+...||....++
T Consensus 90 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l 169 (213)
T cd03259 90 AENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREEL 169 (213)
T ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 44443321110 0001111111110 268999999 99999999876655
Q ss_pred hh
Q psy7718 128 FW 129 (184)
Q Consensus 128 l~ 129 (184)
..
T Consensus 170 ~~ 171 (213)
T cd03259 170 RE 171 (213)
T ss_pred HH
Confidence 43
No 26
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.66 E-value=1.9e-16 Score=129.85 Aligned_cols=125 Identities=16% Similarity=0.066 Sum_probs=88.8
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc----ccccceeEecCCCchhhhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG----SAMEKSVSVGDNGNLYEEWL 79 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~l~~~~~ 79 (184)
+.++.+|+++||++++|++++|+|+||||||||++.|+|...+.+|.|..++..-. .......+++|...+++.++
T Consensus 12 ~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~t 91 (301)
T TIGR03522 12 YGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMY 91 (301)
T ss_pred ECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCc
Confidence 34567999999999999999999999999999999999998888888877553211 11223456778777777777
Q ss_pred hhcCcceeccccc----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHHH
Q psy7718 80 ELKNGCLCCSVKD----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIAK 126 (184)
Q Consensus 80 ~l~~gci~~~~~~----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~~ 126 (184)
..+|..+.+.+++ .....+.+++.. .++|+++++ ||+...||....+
T Consensus 92 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~ 171 (301)
T TIGR03522 92 VREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVE 171 (301)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 7777654443321 111222222221 178999999 9999999987665
Q ss_pred Hh
Q psy7718 127 VF 128 (184)
Q Consensus 127 ~l 128 (184)
+.
T Consensus 172 l~ 173 (301)
T TIGR03522 172 IR 173 (301)
T ss_pred HH
Confidence 44
No 27
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.66 E-value=2.6e-16 Score=126.45 Aligned_cols=122 Identities=16% Similarity=0.144 Sum_probs=80.0
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcccccceeEecCCCchhhhhhhhcC
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLELKN 83 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 83 (184)
|.++.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..-........+++|...++...+..+|
T Consensus 22 ~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~en 101 (257)
T PRK11247 22 YGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDN 101 (257)
T ss_pred ECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHH
Confidence 44567999999999999999999999999999999999998888888876432111111223456666555554455555
Q ss_pred cceecc--cccchHH--------------------------HHHHHHHHcCCCCEEEE-ccCCCCCChhHHHH
Q psy7718 84 GCLCCS--VKDNGVK--------------------------AIENLMLKRGKFDYILL-ETTGLADPGPIAKV 127 (184)
Q Consensus 84 gci~~~--~~~~~~~--------------------------~l~~ll~~~~~~d~iii-E~tg~~dp~~i~~~ 127 (184)
..+... ....... .|.+.+ ..+|+++++ ||+...||.....+
T Consensus 102 l~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL--~~~p~lllLDEPt~~LD~~~~~~l 172 (257)
T PRK11247 102 VGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARAL--IHRPGLLLLDEPLGALDALTRIEM 172 (257)
T ss_pred HHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHH--hcCCCEEEEeCCCCCCCHHHHHHH
Confidence 433210 0000000 111111 268999999 99999999865443
No 28
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.66 E-value=2e-16 Score=132.62 Aligned_cols=125 Identities=14% Similarity=0.078 Sum_probs=90.3
Q ss_pred CCCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcc-----c----ccceeEecCCCc
Q psy7718 3 SDSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGS-----A----MEKSVSVGDNGN 73 (184)
Q Consensus 3 ~~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~-----~----~~~~~~~~~~~~ 73 (184)
+++++.+|+++||++.+|++++|+|+||||||||+++|++..+|.+|.|..++..-.. . .....+++|...
T Consensus 2 ~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 2 KTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred ccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 4567889999999999999999999999999999999999999999988886532111 1 223457888888
Q ss_pred hhhhhhhhcCcceeccccc----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCC
Q psy7718 74 LYEEWLELKNGCLCCSVKD----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLAD 120 (184)
Q Consensus 74 l~~~~~~l~~gci~~~~~~----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~d 120 (184)
+++.++..+|.++.....+ .....+.++++. ..+|+++++ ||++..|
T Consensus 82 l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD 161 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALD 161 (363)
T ss_pred CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 8887777787765432211 111122222221 168999999 9999999
Q ss_pred ChhHHHH
Q psy7718 121 PGPIAKV 127 (184)
Q Consensus 121 p~~i~~~ 127 (184)
|....++
T Consensus 162 ~~~r~~l 168 (363)
T TIGR01186 162 PLIRDSM 168 (363)
T ss_pred HHHHHHH
Confidence 9865544
No 29
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=2.2e-16 Score=132.28 Aligned_cols=123 Identities=14% Similarity=0.057 Sum_probs=90.1
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCC--c-ccccceeEecCCCchhhhhhhh
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGE--G-SAMEKSVSVGDNGNLYEEWLEL 81 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~--~-~~~~~~~~~~~~~~l~~~~~~l 81 (184)
+++.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..- . ...+...+++|+..+++.++..
T Consensus 15 ~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~ 94 (356)
T PRK11650 15 GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVR 94 (356)
T ss_pred CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHH
Confidence 446799999999999999999999999999999999999999999988865321 1 1123455788998888888888
Q ss_pred cCcceeccccc----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHHHH
Q psy7718 82 KNGCLCCSVKD----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIAKV 127 (184)
Q Consensus 82 ~~gci~~~~~~----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~~~ 127 (184)
+|.++....++ .....+.++++. ..+|+++++ ||+...|+....++
T Consensus 95 eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l 173 (356)
T PRK11650 95 ENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQM 173 (356)
T ss_pred HHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 88765433211 111122222221 168999999 99999998765543
No 30
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=2.9e-16 Score=125.95 Aligned_cols=124 Identities=18% Similarity=0.115 Sum_probs=80.8
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcccccceeEecCCCchhhhhhhhcC
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLELKN 83 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 83 (184)
+.++.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..-........+++|...++...+..+|
T Consensus 11 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~ 90 (255)
T PRK11248 11 YGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDN 90 (255)
T ss_pred eCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHH
Confidence 34467999999999999999999999999999999999998888888876543211111223456666555544444444
Q ss_pred cceeccccc----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHHHH
Q psy7718 84 GCLCCSVKD----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIAKV 127 (184)
Q Consensus 84 gci~~~~~~----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~~~ 127 (184)
..+.....+ .....+.+++++ ..+|+++++ ||+...||.....+
T Consensus 91 l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l 167 (255)
T PRK11248 91 VAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQM 167 (255)
T ss_pred HHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH
Confidence 432211100 001111221111 268999999 99999999865543
No 31
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.65 E-value=2.3e-16 Score=130.10 Aligned_cols=114 Identities=18% Similarity=0.163 Sum_probs=86.0
Q ss_pred CCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc--c-cccceeEecCCCchhhhhhhhcCcc
Q psy7718 9 VPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG--S-AMEKSVSVGDNGNLYEEWLELKNGC 85 (184)
Q Consensus 9 ~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~--~-~~~~~~~~~~~~~l~~~~~~l~~gc 85 (184)
+++++||++..|+.++|+||||||||||||+|+|...+.+|.|..++-.-. . ..++...++|+.++|+++++.+|..
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Nia 97 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIA 97 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhh
Confidence 999999999999999999999999999999999999999999988654321 2 2344557899999999999999976
Q ss_pred eeccccc----chHHHHHHH---------HHH-------------------cCCCCEEEE-ccCCCCCCh
Q psy7718 86 LCCSVKD----NGVKAIENL---------MLK-------------------RGKFDYILL-ETTGLADPG 122 (184)
Q Consensus 86 i~~~~~~----~~~~~l~~l---------l~~-------------------~~~~d~iii-E~tg~~dp~ 122 (184)
+--.+++ +....+.+. +.+ ..+|+++++ ||..-.|+.
T Consensus 98 f~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~ 167 (338)
T COG3839 98 FGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK 167 (338)
T ss_pred hhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHH
Confidence 5443332 112222221 111 157998888 999888854
No 32
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=2.4e-16 Score=124.71 Aligned_cols=125 Identities=16% Similarity=0.102 Sum_probs=82.9
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccC--Cc------ccccceeEecCCCchh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFG--EG------SAMEKSVSVGDNGNLY 75 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~--~~------~~~~~~~~~~~~~~l~ 75 (184)
|.++.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++.. .. .......+++|...++
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (235)
T cd03261 10 FGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALF 89 (235)
T ss_pred ECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccC
Confidence 345679999999999999999999999999999999999988888888775432 11 1112234567766555
Q ss_pred hhhhhhcCcceeccc----c-cchHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCC
Q psy7718 76 EEWLELKNGCLCCSV----K-DNGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADP 121 (184)
Q Consensus 76 ~~~~~l~~gci~~~~----~-~~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp 121 (184)
..++..+|.++.... . ......+.++++. ..+|+++++ ||+...||
T Consensus 90 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~ 169 (235)
T cd03261 90 DSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDP 169 (235)
T ss_pred CCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCH
Confidence 555555554432110 0 0001111111111 268999999 99999999
Q ss_pred hhHHHHh
Q psy7718 122 GPIAKVF 128 (184)
Q Consensus 122 ~~i~~~l 128 (184)
.....++
T Consensus 170 ~~~~~l~ 176 (235)
T cd03261 170 IASGVID 176 (235)
T ss_pred HHHHHHH
Confidence 8766554
No 33
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.65 E-value=4.2e-16 Score=120.90 Aligned_cols=123 Identities=20% Similarity=0.105 Sum_probs=78.3
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCC--cccccceeEecCCCch-hhhhhhhcC
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGE--GSAMEKSVSVGDNGNL-YEEWLELKN 83 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~--~~~~~~~~~~~~~~~l-~~~~~~l~~ 83 (184)
+.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..- ........+++|+... +...+..+|
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~ 92 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREE 92 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHH
Confidence 6799999999999999999999999999999999999888888887754321 1111223355665321 112334444
Q ss_pred cceecccccchHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHHHHhh
Q psy7718 84 GCLCCSVKDNGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIAKVFW 129 (184)
Q Consensus 84 gci~~~~~~~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~~~l~ 129 (184)
..+...........+.++++. ..+|+++++ ||+...||....++..
T Consensus 93 l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 167 (205)
T cd03226 93 LLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGE 167 (205)
T ss_pred HhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHH
Confidence 432211111000111111110 258999999 9999999987665543
No 34
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.65 E-value=4.1e-16 Score=125.66 Aligned_cols=119 Identities=20% Similarity=0.123 Sum_probs=90.8
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEeccc---CCcc---cccceeEecCCCchhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEF---GEGS---AMEKSVSVGDNGNLYEE 77 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~---~~~~---~~~~~~~~~~~~~l~~~ 77 (184)
.....++++|||.++.|+.+++.|||||||||++|+|+|...|..|.|..|+- +... ..++..+++|+.++++.
T Consensus 12 ~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~H 91 (345)
T COG1118 12 FGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPH 91 (345)
T ss_pred cccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhccc
Confidence 34567899999999999999999999999999999999999999999998765 3222 24556689999999999
Q ss_pred hhhhcCcceecccc------cchHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCCh
Q psy7718 78 WLELKNGCLCCSVK------DNGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPG 122 (184)
Q Consensus 78 ~~~l~~gci~~~~~------~~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~ 122 (184)
++...|..+--..+ ........+++.. ...|+++++ ||.|..|..
T Consensus 92 mtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~ 171 (345)
T COG1118 92 MTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAK 171 (345)
T ss_pred chHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHH
Confidence 99999976543222 1112233333321 157999999 999999965
No 35
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.65 E-value=4.6e-16 Score=120.87 Aligned_cols=125 Identities=20% Similarity=0.179 Sum_probs=83.0
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc---ccccceeEecCCCchhhhhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG---SAMEKSVSVGDNGNLYEEWLE 80 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~---~~~~~~~~~~~~~~l~~~~~~ 80 (184)
|.++++|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..-. .......+++|+..++...+.
T Consensus 10 ~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (208)
T cd03268 10 YGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTA 89 (208)
T ss_pred ECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcH
Confidence 34567999999999999999999999999999999999998888888887653211 111223456676655555555
Q ss_pred hcCcceecccccchHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHHHHh
Q psy7718 81 LKNGCLCCSVKDNGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIAKVF 128 (184)
Q Consensus 81 l~~gci~~~~~~~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~~~l 128 (184)
.+|.++.....+.....+.+++++ ..+|+++++ ||+...||....+++
T Consensus 90 ~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~ 166 (208)
T cd03268 90 RENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELR 166 (208)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHH
Confidence 555443211110000111111110 268999999 999999998776654
No 36
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.65 E-value=3e-16 Score=130.72 Aligned_cols=122 Identities=17% Similarity=0.159 Sum_probs=87.1
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcc--------cccceeEecCCCchhhhh
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGS--------AMEKSVSVGDNGNLYEEW 78 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~--------~~~~~~~~~~~~~l~~~~ 78 (184)
..+|++|||++.+|++++|+|+||||||||++.|.+..+|.+|.|..++..-.. ...+...++|...++...
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~ 97 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSR 97 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccC
Confidence 469999999999999999999999999999999999998888988876532111 122345678887777767
Q ss_pred hhhcCcceeccccc----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHH
Q psy7718 79 LELKNGCLCCSVKD----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIA 125 (184)
Q Consensus 79 ~~l~~gci~~~~~~----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~ 125 (184)
+..+|.++.+...+ .....+.++++. ..+|+++++ |||...||....
T Consensus 98 tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~ 177 (343)
T TIGR02314 98 TVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQ 177 (343)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHH
Confidence 77777665432211 111122222221 168999999 999999998665
Q ss_pred HHh
Q psy7718 126 KVF 128 (184)
Q Consensus 126 ~~l 128 (184)
+++
T Consensus 178 ~i~ 180 (343)
T TIGR02314 178 SIL 180 (343)
T ss_pred HHH
Confidence 543
No 37
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.65 E-value=2.6e-16 Score=122.13 Aligned_cols=126 Identities=16% Similarity=0.088 Sum_probs=81.2
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCC----cccccceeEecCCCchhhhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGE----GSAMEKSVSVGDNGNLYEEWL 79 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~----~~~~~~~~~~~~~~~l~~~~~ 79 (184)
+.++.+|+++||++++|++++|+|+||||||||++.|+|..++.+|.|..++..- ........++.+...++..++
T Consensus 11 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~t 90 (204)
T PRK13538 11 RDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELT 90 (204)
T ss_pred ECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCc
Confidence 3446799999999999999999999999999999999999888888887754221 111122334555544444444
Q ss_pred hhcCcceeccccc-chHHHHHHHHH----------------------------HcCCCCEEEE-ccCCCCCChhHHHHhh
Q psy7718 80 ELKNGCLCCSVKD-NGVKAIENLML----------------------------KRGKFDYILL-ETTGLADPGPIAKVFW 129 (184)
Q Consensus 80 ~l~~gci~~~~~~-~~~~~l~~ll~----------------------------~~~~~d~iii-E~tg~~dp~~i~~~l~ 129 (184)
..+|..+.+...+ .....+.++++ -..+|+++++ ||+...||....++..
T Consensus 91 v~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~ 170 (204)
T PRK13538 91 ALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEA 170 (204)
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH
Confidence 4444332221110 00111111111 0268999999 9999999987766543
No 38
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=4.1e-16 Score=122.21 Aligned_cols=125 Identities=18% Similarity=0.092 Sum_probs=81.7
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc----ccccceeEecCCCchhhhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG----SAMEKSVSVGDNGNLYEEWL 79 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~l~~~~~ 79 (184)
+.++.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..-. .......+++|+..+++.++
T Consensus 10 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (220)
T cd03265 10 YGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELT 89 (220)
T ss_pred ECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCc
Confidence 34567999999999999999999999999999999999998888888877543211 11122345666655554444
Q ss_pred hhcCcceeccccc----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHHH
Q psy7718 80 ELKNGCLCCSVKD----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIAK 126 (184)
Q Consensus 80 ~l~~gci~~~~~~----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~~ 126 (184)
..+|..+.+...+ .....+.++++. ..+|+++++ ||+...||.....
T Consensus 90 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~ 169 (220)
T cd03265 90 GWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAH 169 (220)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHH
Confidence 4444332111110 011111222111 268999999 9999999987665
Q ss_pred Hh
Q psy7718 127 VF 128 (184)
Q Consensus 127 ~l 128 (184)
+.
T Consensus 170 l~ 171 (220)
T cd03265 170 VW 171 (220)
T ss_pred HH
Confidence 44
No 39
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=4.5e-16 Score=123.52 Aligned_cols=125 Identities=18% Similarity=0.114 Sum_probs=83.5
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCC--cc-cccceeEecCCCchhhhhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGE--GS-AMEKSVSVGDNGNLYEEWLE 80 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~--~~-~~~~~~~~~~~~~l~~~~~~ 80 (184)
|.++.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..- .. ......+++|.+.++...+.
T Consensus 12 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 91 (239)
T cd03296 12 FGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTV 91 (239)
T ss_pred ECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCH
Confidence 3456799999999999999999999999999999999999888888887754321 11 11223456676665555555
Q ss_pred hcCcceeccccc--------chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChh
Q psy7718 81 LKNGCLCCSVKD--------NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGP 123 (184)
Q Consensus 81 l~~gci~~~~~~--------~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~ 123 (184)
.+|.++.+.... .....+.++++. ..+|+++++ ||+...||..
T Consensus 92 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~ 171 (239)
T cd03296 92 FDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKV 171 (239)
T ss_pred HHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 666554322110 001111221111 168999999 9999999986
Q ss_pred HHHHh
Q psy7718 124 IAKVF 128 (184)
Q Consensus 124 i~~~l 128 (184)
...+.
T Consensus 172 ~~~l~ 176 (239)
T cd03296 172 RKELR 176 (239)
T ss_pred HHHHH
Confidence 65543
No 40
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.65 E-value=4.1e-16 Score=121.51 Aligned_cols=126 Identities=14% Similarity=0.060 Sum_probs=82.0
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccC--Ccc-cccceeEecCCCchhhhhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFG--EGS-AMEKSVSVGDNGNLYEEWLE 80 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~--~~~-~~~~~~~~~~~~~l~~~~~~ 80 (184)
++++.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++.. ... ......+++|...++...+.
T Consensus 10 ~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (213)
T cd03301 10 FGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTV 89 (213)
T ss_pred ECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCH
Confidence 345679999999999999999999999999999999999988888887765432 111 11123356666555444444
Q ss_pred hcCcceecccc----cchHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHHHH
Q psy7718 81 LKNGCLCCSVK----DNGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIAKV 127 (184)
Q Consensus 81 l~~gci~~~~~----~~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~~~ 127 (184)
.+|..+.+... ......+.+++.+ ..+|+++++ ||+...||....++
T Consensus 90 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l 169 (213)
T cd03301 90 YDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQM 169 (213)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 55543322111 0111111121111 168999999 99999999876665
Q ss_pred hh
Q psy7718 128 FW 129 (184)
Q Consensus 128 l~ 129 (184)
..
T Consensus 170 ~~ 171 (213)
T cd03301 170 RA 171 (213)
T ss_pred HH
Confidence 43
No 41
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=5.4e-16 Score=117.41 Aligned_cols=120 Identities=18% Similarity=0.110 Sum_probs=84.6
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc----ccccceeEecCCCchhhhhhhh
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG----SAMEKSVSVGDNGNLYEEWLEL 81 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~l~~~~~~l 81 (184)
+..+|+++||++.+|++++|+|+||||||||++.|++..++.+|.|..++..-. .......+++|+..++...+..
T Consensus 12 ~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 91 (173)
T cd03230 12 KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVR 91 (173)
T ss_pred CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHH
Confidence 357999999999999999999999999999999999988888888876543211 1112344667776655555555
Q ss_pred cCcceecccccchHHHHHHHHHHcCCCCEEEE-ccCCCCCChhHHHHhh
Q psy7718 82 KNGCLCCSVKDNGVKAIENLMLKRGKFDYILL-ETTGLADPGPIAKVFW 129 (184)
Q Consensus 82 ~~gci~~~~~~~~~~~l~~ll~~~~~~d~iii-E~tg~~dp~~i~~~l~ 129 (184)
+|.. .+..+...-.+.+.+ ..+|+++++ ||+...|+....++..
T Consensus 92 ~~~~--LS~G~~qrv~laral--~~~p~illlDEPt~~LD~~~~~~l~~ 136 (173)
T cd03230 92 ENLK--LSGGMKQRLALAQAL--LHDPELLILDEPTSGLDPESRREFWE 136 (173)
T ss_pred HHhh--cCHHHHHHHHHHHHH--HcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 5543 121122233555555 358999999 9999999987666543
No 42
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.64 E-value=7.6e-16 Score=122.30 Aligned_cols=123 Identities=20% Similarity=0.159 Sum_probs=83.2
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcc--------cccceeEecCCCchhhh
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGS--------AMEKSVSVGDNGNLYEE 77 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~--------~~~~~~~~~~~~~l~~~ 77 (184)
++.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..-.. ......+++|...++..
T Consensus 14 ~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (243)
T TIGR02315 14 GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIER 93 (243)
T ss_pred CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccccc
Confidence 5679999999999999999999999999999999999988888888876532110 11223467777666665
Q ss_pred hhhhcCcceecc--------c----ccchHHHHHHHHHH----------------------------cCCCCEEEE-ccC
Q psy7718 78 WLELKNGCLCCS--------V----KDNGVKAIENLMLK----------------------------RGKFDYILL-ETT 116 (184)
Q Consensus 78 ~~~l~~gci~~~--------~----~~~~~~~l~~ll~~----------------------------~~~~d~iii-E~t 116 (184)
++..+|.++... . .......+.++++. ..+|+++++ ||+
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 173 (243)
T TIGR02315 94 LTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPI 173 (243)
T ss_pred ccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 566666543210 0 00001112222111 168999999 999
Q ss_pred CCCCChhHHHHh
Q psy7718 117 GLADPGPIAKVF 128 (184)
Q Consensus 117 g~~dp~~i~~~l 128 (184)
...||.....+.
T Consensus 174 ~~LD~~~~~~l~ 185 (243)
T TIGR02315 174 ASLDPKTSKQVM 185 (243)
T ss_pred ccCCHHHHHHHH
Confidence 999998765543
No 43
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=3.9e-16 Score=130.55 Aligned_cols=124 Identities=14% Similarity=0.057 Sum_probs=90.8
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCC--ccc-ccceeEecCCCchhhhhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGE--GSA-MEKSVSVGDNGNLYEEWLE 80 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~--~~~-~~~~~~~~~~~~l~~~~~~ 80 (184)
|++..+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..- ... .++...++|+..+++.++.
T Consensus 16 ~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv 95 (351)
T PRK11432 16 FGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSL 95 (351)
T ss_pred ECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCH
Confidence 3456789999999999999999999999999999999999999899888765321 111 2344578899888888888
Q ss_pred hcCcceeccccc----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHHHH
Q psy7718 81 LKNGCLCCSVKD----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIAKV 127 (184)
Q Consensus 81 l~~gci~~~~~~----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~~~ 127 (184)
.+|.++.+..+. .....+.++++. ..+|+++++ ||+...|+....++
T Consensus 96 ~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l 175 (351)
T PRK11432 96 GENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSM 175 (351)
T ss_pred HHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHH
Confidence 888876543211 111122222211 168999999 99999998765554
No 44
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.64 E-value=3.2e-16 Score=121.46 Aligned_cols=126 Identities=25% Similarity=0.099 Sum_probs=83.1
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccC-----Cc----ccccceeEecCCCch
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFG-----EG----SAMEKSVSVGDNGNL 74 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~-----~~----~~~~~~~~~~~~~~l 74 (184)
+.++.+|+++||++.+|++++|+|+||||||||++.|+|..++..|.|..++.. .. .......+++|...+
T Consensus 8 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 87 (206)
T TIGR03608 8 FGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFAL 87 (206)
T ss_pred ECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhh
Confidence 345679999999999999999999999999999999999988888888775432 00 011233456666655
Q ss_pred hhhhhhhcCcceecccc----cchHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCC
Q psy7718 75 YEEWLELKNGCLCCSVK----DNGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADP 121 (184)
Q Consensus 75 ~~~~~~l~~gci~~~~~----~~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp 121 (184)
+...+..+|.++.+... ......+.++++. ..+|+++++ ||+...||
T Consensus 88 ~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~ 167 (206)
T TIGR03608 88 IENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDP 167 (206)
T ss_pred ccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCH
Confidence 55455555544322110 0011111121111 268999999 99999999
Q ss_pred hhHHHHhh
Q psy7718 122 GPIAKVFW 129 (184)
Q Consensus 122 ~~i~~~l~ 129 (184)
....++..
T Consensus 168 ~~~~~l~~ 175 (206)
T TIGR03608 168 KNRDEVLD 175 (206)
T ss_pred HHHHHHHH
Confidence 87766543
No 45
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.64 E-value=3.4e-16 Score=131.00 Aligned_cols=124 Identities=14% Similarity=0.036 Sum_probs=90.0
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc---ccccceeEecCCCchhhhhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG---SAMEKSVSVGDNGNLYEEWLE 80 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~---~~~~~~~~~~~~~~l~~~~~~ 80 (184)
+.++.+|+++||++.+|++++|+||||||||||+++|+|..++.+|.|..++..-. ...+....++|+..+++.++.
T Consensus 14 ~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (353)
T TIGR03265 14 FGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTV 93 (353)
T ss_pred eCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcH
Confidence 44567899999999999999999999999999999999998898898887653211 122345578899888888888
Q ss_pred hcCcceeccccc----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHHHH
Q psy7718 81 LKNGCLCCSVKD----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIAKV 127 (184)
Q Consensus 81 l~~gci~~~~~~----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~~~ 127 (184)
.+|.++....++ .....+.++++. ..+|+++++ ||+...|+....++
T Consensus 94 ~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l 173 (353)
T TIGR03265 94 ADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHL 173 (353)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 888765432211 111222222221 168999999 99999998754443
No 46
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.64 E-value=4.1e-16 Score=130.51 Aligned_cols=124 Identities=18% Similarity=0.117 Sum_probs=88.7
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCC--cc-cccceeEecCCCchhhhhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGE--GS-AMEKSVSVGDNGNLYEEWLE 80 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~--~~-~~~~~~~~~~~~~l~~~~~~ 80 (184)
+.+..+|+++||++.+|++++|+|+||||||||+++|+|..++.+|.|..++..- .. ..+...+++|+..+++.++.
T Consensus 12 ~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv 91 (353)
T PRK10851 12 FGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTV 91 (353)
T ss_pred eCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcH
Confidence 3456799999999999999999999999999999999999888888887765321 11 12345578888888887778
Q ss_pred hcCcceecccc--------cchHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChh
Q psy7718 81 LKNGCLCCSVK--------DNGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGP 123 (184)
Q Consensus 81 l~~gci~~~~~--------~~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~ 123 (184)
.+|.++..... ......+.++++. ..+|+++++ ||+...|+..
T Consensus 92 ~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~ 171 (353)
T PRK10851 92 FDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQV 171 (353)
T ss_pred HHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 88876543210 0111122222221 168999999 9999999976
Q ss_pred HHHH
Q psy7718 124 IAKV 127 (184)
Q Consensus 124 i~~~ 127 (184)
..++
T Consensus 172 r~~l 175 (353)
T PRK10851 172 RKEL 175 (353)
T ss_pred HHHH
Confidence 5443
No 47
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.64 E-value=7e-16 Score=119.13 Aligned_cols=125 Identities=19% Similarity=0.152 Sum_probs=78.6
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc----ccccceeEecCCCchhhhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG----SAMEKSVSVGDNGNLYEEWL 79 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~l~~~~~ 79 (184)
+.++.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..-. .......+++|...++...+
T Consensus 10 ~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (198)
T TIGR01189 10 RGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELS 89 (198)
T ss_pred ECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCc
Confidence 34567999999999999999999999999999999999998888888877553211 01122334555544433333
Q ss_pred hhcCcceecccccchHHHHHHHHH----------------------------HcCCCCEEEE-ccCCCCCChhHHHHh
Q psy7718 80 ELKNGCLCCSVKDNGVKAIENLML----------------------------KRGKFDYILL-ETTGLADPGPIAKVF 128 (184)
Q Consensus 80 ~l~~gci~~~~~~~~~~~l~~ll~----------------------------~~~~~d~iii-E~tg~~dp~~i~~~l 128 (184)
..+|..+.+.........+.++++ -..+|+++++ ||+...|+.....+.
T Consensus 90 v~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~ 167 (198)
T TIGR01189 90 ALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLA 167 (198)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHH
Confidence 333332221111100001111111 0268999999 999999998766544
No 48
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.64 E-value=5e-16 Score=120.82 Aligned_cols=126 Identities=17% Similarity=0.067 Sum_probs=78.0
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc--ccccceeEecCCCchhhhhhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG--SAMEKSVSVGDNGNLYEEWLEL 81 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~--~~~~~~~~~~~~~~l~~~~~~l 81 (184)
+.++.+|+++||++++|++++|+|+||||||||++.|+|...+.+|.|..++.... .......++++...++...+..
T Consensus 12 ~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~ 91 (207)
T PRK13539 12 RGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVA 91 (207)
T ss_pred ECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHH
Confidence 34457999999999999999999999999999999999998888888877543210 1111223344433333333333
Q ss_pred cCcceecccccchHHHHHHHHH----------------------------HcCCCCEEEE-ccCCCCCChhHHHHhh
Q psy7718 82 KNGCLCCSVKDNGVKAIENLML----------------------------KRGKFDYILL-ETTGLADPGPIAKVFW 129 (184)
Q Consensus 82 ~~gci~~~~~~~~~~~l~~ll~----------------------------~~~~~d~iii-E~tg~~dp~~i~~~l~ 129 (184)
+|..+.+...+.....+.++++ -..+|+++++ ||+...||....++..
T Consensus 92 ~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~ 168 (207)
T PRK13539 92 ENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAE 168 (207)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 3332222111000001111111 0258999999 9999999987666543
No 49
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.64 E-value=7.1e-16 Score=121.67 Aligned_cols=125 Identities=15% Similarity=0.148 Sum_probs=82.9
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc--c---cc-cceeEecCCCchhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG--S---AM-EKSVSVGDNGNLYEE 77 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~--~---~~-~~~~~~~~~~~l~~~ 77 (184)
+.++.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..-. . .. ....+++|...++..
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (232)
T cd03218 10 YGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRK 89 (232)
T ss_pred eCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCcccccc
Confidence 44567999999999999999999999999999999999998888888877543211 1 11 123456776666555
Q ss_pred hhhhcCcceeccccc----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhH
Q psy7718 78 WLELKNGCLCCSVKD----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPI 124 (184)
Q Consensus 78 ~~~l~~gci~~~~~~----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i 124 (184)
++..+|..+.+..+. .....+.++++. ..+|+++++ ||+...|+...
T Consensus 90 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~ 169 (232)
T cd03218 90 LTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAV 169 (232)
T ss_pred CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHH
Confidence 555555443221111 111111222111 168999999 99999999876
Q ss_pred HHHh
Q psy7718 125 AKVF 128 (184)
Q Consensus 125 ~~~l 128 (184)
.++.
T Consensus 170 ~~~~ 173 (232)
T cd03218 170 QDIQ 173 (232)
T ss_pred HHHH
Confidence 5543
No 50
>PRK10908 cell division protein FtsE; Provisional
Probab=99.63 E-value=8.7e-16 Score=120.52 Aligned_cols=124 Identities=17% Similarity=0.146 Sum_probs=80.7
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccC--Cc---c---cccceeEecCCCchhh
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFG--EG---S---AMEKSVSVGDNGNLYE 76 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~--~~---~---~~~~~~~~~~~~~l~~ 76 (184)
.++.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++.. .. . ......+++|...++.
T Consensus 13 ~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~ 92 (222)
T PRK10908 13 GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLM 92 (222)
T ss_pred CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccc
Confidence 34679999999999999999999999999999999999988888888775431 10 0 1122345667655544
Q ss_pred hhhhhcCcceeccccc----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChh
Q psy7718 77 EWLELKNGCLCCSVKD----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGP 123 (184)
Q Consensus 77 ~~~~l~~gci~~~~~~----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~ 123 (184)
..+..+|..+.....+ .....+.++++. ..+|+++++ ||+...||..
T Consensus 93 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~ 172 (222)
T PRK10908 93 DRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDAL 172 (222)
T ss_pred cccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHH
Confidence 4444444433211100 001111111110 268999999 9999999986
Q ss_pred HHHHh
Q psy7718 124 IAKVF 128 (184)
Q Consensus 124 i~~~l 128 (184)
..+++
T Consensus 173 ~~~l~ 177 (222)
T PRK10908 173 SEGIL 177 (222)
T ss_pred HHHHH
Confidence 55544
No 51
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.63 E-value=8.7e-16 Score=119.77 Aligned_cols=124 Identities=19% Similarity=0.140 Sum_probs=81.5
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcc--------cccceeEecCCCchhhh
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGS--------AMEKSVSVGDNGNLYEE 77 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~--------~~~~~~~~~~~~~l~~~ 77 (184)
++.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..-.. ......+++|...++..
T Consensus 14 ~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (214)
T TIGR02673 14 GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPD 93 (214)
T ss_pred CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccC
Confidence 4679999999999999999999999999999999999988888888775532110 11223456676555544
Q ss_pred hhhhcCcceecccc---c-chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhH
Q psy7718 78 WLELKNGCLCCSVK---D-NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPI 124 (184)
Q Consensus 78 ~~~l~~gci~~~~~---~-~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i 124 (184)
.+..+|..+..... . .....+.++++. ..+|+++++ ||+...||...
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~ 173 (214)
T TIGR02673 94 RTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLS 173 (214)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHH
Confidence 44444443321110 0 001111111110 268999999 99999999877
Q ss_pred HHHhh
Q psy7718 125 AKVFW 129 (184)
Q Consensus 125 ~~~l~ 129 (184)
.++..
T Consensus 174 ~~l~~ 178 (214)
T TIGR02673 174 ERILD 178 (214)
T ss_pred HHHHH
Confidence 66543
No 52
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.63 E-value=9e-16 Score=120.01 Aligned_cols=122 Identities=22% Similarity=0.123 Sum_probs=81.7
Q ss_pred CCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc----ccccceeEecCCCchhhhhhhhcC
Q psy7718 8 EVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG----SAMEKSVSVGDNGNLYEEWLELKN 83 (184)
Q Consensus 8 ~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~l~~~~~~l~~ 83 (184)
++|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..-. .......+++|...++..++..+|
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 98 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTAREN 98 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHH
Confidence 7999999999999999999999999999999999998888888877543211 111223456776666555555555
Q ss_pred cceeccccc----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHHHHhh
Q psy7718 84 GCLCCSVKD----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIAKVFW 129 (184)
Q Consensus 84 gci~~~~~~----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~~~l~ 129 (184)
..+.+..++ .....+.++++. ..+|+++++ ||+...||....++..
T Consensus 99 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~ 177 (218)
T cd03266 99 LEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALRE 177 (218)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHH
Confidence 433222111 111111121111 168999999 9999999987665543
No 53
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.63 E-value=5.6e-16 Score=127.20 Aligned_cols=125 Identities=18% Similarity=0.049 Sum_probs=82.9
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccC--Cc--ccccceeEecCCCchhhhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFG--EG--SAMEKSVSVGDNGNLYEEWL 79 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~--~~--~~~~~~~~~~~~~~l~~~~~ 79 (184)
+.+..+|+++||++++|++++|+|+||||||||++.|+|..+|.+|.|..++.. .. .......+++|...++..++
T Consensus 14 ~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 93 (303)
T TIGR01288 14 YGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFT 93 (303)
T ss_pred eCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCc
Confidence 345679999999999999999999999999999999999988888888775432 11 11123446677666655555
Q ss_pred hhcCcceeccccc----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHHH
Q psy7718 80 ELKNGCLCCSVKD----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIAK 126 (184)
Q Consensus 80 ~l~~gci~~~~~~----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~~ 126 (184)
..+|..+.+..++ .....+.++++. ..+|+++++ ||+...||....+
T Consensus 94 v~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~ 173 (303)
T TIGR01288 94 VRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHL 173 (303)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHH
Confidence 5555432221110 001111121111 268999999 9999999986654
Q ss_pred Hh
Q psy7718 127 VF 128 (184)
Q Consensus 127 ~l 128 (184)
+.
T Consensus 174 l~ 175 (303)
T TIGR01288 174 IW 175 (303)
T ss_pred HH
Confidence 43
No 54
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.63 E-value=1.1e-15 Score=119.21 Aligned_cols=123 Identities=19% Similarity=0.148 Sum_probs=82.0
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcc--------cccceeEecCCCchhhhh
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGS--------AMEKSVSVGDNGNLYEEW 78 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~--------~~~~~~~~~~~~~l~~~~ 78 (184)
+.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..-.. ......+++|+..++...
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDR 93 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCC
Confidence 579999999999999999999999999999999999988888888775431110 112234566766555554
Q ss_pred hhhcCcceeccccc----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHH
Q psy7718 79 LELKNGCLCCSVKD----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIA 125 (184)
Q Consensus 79 ~~l~~gci~~~~~~----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~ 125 (184)
+..+|..+.....+ .....+.+++++ ..+|+++++ ||+...||....
T Consensus 94 t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 173 (214)
T cd03292 94 NVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTW 173 (214)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHH
Confidence 55555443221100 011111111111 268999999 999999998766
Q ss_pred HHhh
Q psy7718 126 KVFW 129 (184)
Q Consensus 126 ~~l~ 129 (184)
.+..
T Consensus 174 ~~~~ 177 (214)
T cd03292 174 EIMN 177 (214)
T ss_pred HHHH
Confidence 6543
No 55
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.63 E-value=1.3e-16 Score=124.92 Aligned_cols=126 Identities=18% Similarity=0.124 Sum_probs=90.1
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcc----cc--cceeEecCCCchhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGS----AM--EKSVSVGDNGNLYEE 77 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~----~~--~~~~~~~~~~~l~~~ 77 (184)
.++-.++++|||++.+|++++++|||||||||++|.+.|..+|++|.|+.++-.-.. .. .-..+.+|...++..
T Consensus 14 FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~ 93 (250)
T COG0411 14 FGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPG 93 (250)
T ss_pred cCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCC
Confidence 355679999999999999999999999999999999999999999999886543211 11 113357888888888
Q ss_pred hhhhcCcceecccc----------------cchHHHHHHHHHH----------------------------cCCCCEEEE
Q psy7718 78 WLELKNGCLCCSVK----------------DNGVKAIENLMLK----------------------------RGKFDYILL 113 (184)
Q Consensus 78 ~~~l~~gci~~~~~----------------~~~~~~l~~ll~~----------------------------~~~~d~iii 113 (184)
++.++|..+....+ ....+...++++. ..+|+++++
T Consensus 94 lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLL 173 (250)
T COG0411 94 LTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLL 173 (250)
T ss_pred CcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEe
Confidence 99999875542211 0011111112211 258999999
Q ss_pred -ccCCCCCChhHHHHhh
Q psy7718 114 -ETTGLADPGPIAKVFW 129 (184)
Q Consensus 114 -E~tg~~dp~~i~~~l~ 129 (184)
||..+..|.+..++..
T Consensus 174 DEPaAGln~~e~~~l~~ 190 (250)
T COG0411 174 DEPAAGLNPEETEELAE 190 (250)
T ss_pred cCccCCCCHHHHHHHHH
Confidence 9999999987666543
No 56
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.63 E-value=9e-17 Score=122.57 Aligned_cols=126 Identities=17% Similarity=0.182 Sum_probs=94.0
Q ss_pred CCCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCccc----ccc--eeEecCCCchhh
Q psy7718 3 SDSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSA----MEK--SVSVGDNGNLYE 76 (184)
Q Consensus 3 ~~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~~----~~~--~~~~~~~~~l~~ 76 (184)
+|..+.|+++|||++++|+++++.|||||||||.+.++.|..++.+|.|..++..-... ..+ ..++.|+...+.
T Consensus 13 ~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr 92 (243)
T COG1137 13 SYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFR 92 (243)
T ss_pred hhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhh
Confidence 57889999999999999999999999999999999999999999999998876543211 111 336788888888
Q ss_pred hhhhhcCcceeccccc-chH-----HHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCC
Q psy7718 77 EWLELKNGCLCCSVKD-NGV-----KAIENLMLK----------------------------RGKFDYILL-ETTGLADP 121 (184)
Q Consensus 77 ~~~~l~~gci~~~~~~-~~~-----~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp 121 (184)
.+++.+|....-..+. +.. ..+.+|++. ..+|.++++ ||..+.||
T Consensus 93 ~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDP 172 (243)
T COG1137 93 KLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDP 172 (243)
T ss_pred cCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCc
Confidence 8888888643322222 111 123344432 158999999 99999999
Q ss_pred hhHHHHh
Q psy7718 122 GPIAKVF 128 (184)
Q Consensus 122 ~~i~~~l 128 (184)
-.+.++-
T Consensus 173 iaV~dIq 179 (243)
T COG1137 173 IAVIDIQ 179 (243)
T ss_pred hhHHHHH
Confidence 9887653
No 57
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.63 E-value=8e-16 Score=120.19 Aligned_cols=123 Identities=18% Similarity=0.154 Sum_probs=81.6
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcc--------cccceeEecCCCchhhhh
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGS--------AMEKSVSVGDNGNLYEEW 78 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~--------~~~~~~~~~~~~~l~~~~ 78 (184)
+.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..-.. ......+++|...++...
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 95 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDR 95 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccc
Confidence 469999999999999999999999999999999999988888888776532110 112334567766655555
Q ss_pred hhhcCcceecccc----cchHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHH
Q psy7718 79 LELKNGCLCCSVK----DNGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIA 125 (184)
Q Consensus 79 ~~l~~gci~~~~~----~~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~ 125 (184)
+..+|..+..... ......+.++++. ..+|+++++ ||+...||....
T Consensus 96 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 175 (216)
T TIGR00960 96 TVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSR 175 (216)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHH
Confidence 5555543321110 0011111111110 268999999 999999998766
Q ss_pred HHhh
Q psy7718 126 KVFW 129 (184)
Q Consensus 126 ~~l~ 129 (184)
++..
T Consensus 176 ~l~~ 179 (216)
T TIGR00960 176 DIMR 179 (216)
T ss_pred HHHH
Confidence 5543
No 58
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.63 E-value=9.4e-16 Score=120.07 Aligned_cols=123 Identities=19% Similarity=0.147 Sum_probs=81.1
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc----ccccceeEecCCCchhhhhhhhc
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG----SAMEKSVSVGDNGNLYEEWLELK 82 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~l~~~~~~l~ 82 (184)
+++|+++||++.+|++++|+|+||||||||++.|+|..++..|.|..++..-. .......+++|...++...+..+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 94 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVRE 94 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHH
Confidence 67999999999999999999999999999999999998888888876543211 11122345666655554444455
Q ss_pred Ccceeccc---cc-chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHHHHhh
Q psy7718 83 NGCLCCSV---KD-NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIAKVFW 129 (184)
Q Consensus 83 ~gci~~~~---~~-~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~~~l~ 129 (184)
|.++.... .. .....+.++++. ..+|+++++ ||+...||....+++.
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~ 174 (220)
T cd03263 95 HLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWD 174 (220)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHH
Confidence 54332111 00 011111121110 268999999 9999999987665543
No 59
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.63 E-value=1.4e-15 Score=119.60 Aligned_cols=125 Identities=18% Similarity=0.121 Sum_probs=81.5
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcC-----CCCeEEEEecccCCc--c-----cccceeEecCC
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQ-----HDKKIAVILNEFGEG--S-----AMEKSVSVGDN 71 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~-----~~~~~~vi~~~~~~~--~-----~~~~~~~~~~~ 71 (184)
+.++.+|+++||++.+|++++|+|+||||||||++.|+|.. .+.+|.|..++..-. . ......+++|+
T Consensus 10 ~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~ 89 (227)
T cd03260 10 YGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQK 89 (227)
T ss_pred cCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecC
Confidence 44567999999999999999999999999999999999987 788888877553211 0 11223456676
Q ss_pred CchhhhhhhhcCcceeccccc----c-hHHHHHHHHH------------------------------HcCCCCEEEE-cc
Q psy7718 72 GNLYEEWLELKNGCLCCSVKD----N-GVKAIENLML------------------------------KRGKFDYILL-ET 115 (184)
Q Consensus 72 ~~l~~~~~~l~~gci~~~~~~----~-~~~~l~~ll~------------------------------~~~~~d~iii-E~ 115 (184)
..++ ..+..+|.++.+...+ . ....+.++++ -..+|+++++ ||
T Consensus 90 ~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP 168 (227)
T cd03260 90 PNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEP 168 (227)
T ss_pred chhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 5555 4455555443221100 0 0001111100 0257899999 99
Q ss_pred CCCCCChhHHHHhh
Q psy7718 116 TGLADPGPIAKVFW 129 (184)
Q Consensus 116 tg~~dp~~i~~~l~ 129 (184)
+...||....+++.
T Consensus 169 t~~LD~~~~~~l~~ 182 (227)
T cd03260 169 TSALDPISTAKIEE 182 (227)
T ss_pred CccCCHHHHHHHHH
Confidence 99999987666544
No 60
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.62 E-value=1.5e-15 Score=117.56 Aligned_cols=123 Identities=20% Similarity=0.105 Sum_probs=79.3
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc----ccccceeEecCCCchhhhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG----SAMEKSVSVGDNGNLYEEWL 79 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~l~~~~~ 79 (184)
+.++.+++++||++.+|++++|+|+||||||||++.|++..++.+|.|..++..-. .......+++|...++...+
T Consensus 10 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (201)
T cd03231 10 RDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLS 89 (201)
T ss_pred eCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcC
Confidence 44567999999999999999999999999999999999998888888776542211 11122334555544443344
Q ss_pred hhcCcceeccccc--chH--------------------------HHHHHHHHHcCCCCEEEE-ccCCCCCChhHHHHh
Q psy7718 80 ELKNGCLCCSVKD--NGV--------------------------KAIENLMLKRGKFDYILL-ETTGLADPGPIAKVF 128 (184)
Q Consensus 80 ~l~~gci~~~~~~--~~~--------------------------~~l~~ll~~~~~~d~iii-E~tg~~dp~~i~~~l 128 (184)
..+|.++...... ... -.+.+.+ ..+|+++++ ||+...||....++.
T Consensus 90 v~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral--~~~p~llllDEPt~~LD~~~~~~l~ 165 (201)
T cd03231 90 VLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLL--LSGRPLWILDEPTTALDKAGVARFA 165 (201)
T ss_pred HHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHH--hcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 4444333211100 000 0111111 268999999 999999998766554
No 61
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=8.1e-16 Score=128.32 Aligned_cols=123 Identities=17% Similarity=0.131 Sum_probs=83.6
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcc--------cccceeEecCCCchhhh
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGS--------AMEKSVSVGDNGNLYEE 77 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~--------~~~~~~~~~~~~~l~~~ 77 (184)
++.+|+++||++++|++++|+|+||||||||++.|++..+|.+|.|..++..-.. ......+++|...++..
T Consensus 17 ~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~ 96 (343)
T PRK11153 17 TIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSS 96 (343)
T ss_pred ceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCC
Confidence 3579999999999999999999999999999999999988888888876532111 11234467777666655
Q ss_pred hhhhcCcceeccccc----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhH
Q psy7718 78 WLELKNGCLCCSVKD----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPI 124 (184)
Q Consensus 78 ~~~l~~gci~~~~~~----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i 124 (184)
.+..+|..+.....+ .....+.++++. ..+|+++++ ||+...||...
T Consensus 97 ~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~ 176 (343)
T PRK11153 97 RTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176 (343)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 555665543321110 011111121111 268999999 99999999866
Q ss_pred HHHh
Q psy7718 125 AKVF 128 (184)
Q Consensus 125 ~~~l 128 (184)
.+++
T Consensus 177 ~~l~ 180 (343)
T PRK11153 177 RSIL 180 (343)
T ss_pred HHHH
Confidence 5543
No 62
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.62 E-value=1.3e-15 Score=120.78 Aligned_cols=78 Identities=21% Similarity=0.148 Sum_probs=57.3
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccC--Ccc------cccceeEecCCCchhhhh
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFG--EGS------AMEKSVSVGDNGNLYEEW 78 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~--~~~------~~~~~~~~~~~~~l~~~~ 78 (184)
+.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++.. ... ......+++|+..++...
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 93 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERL 93 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccC
Confidence 679999999999999999999999999999999999988888888775432 111 112234566665555444
Q ss_pred hhhcCc
Q psy7718 79 LELKNG 84 (184)
Q Consensus 79 ~~l~~g 84 (184)
+..+|.
T Consensus 94 tv~~~l 99 (241)
T cd03256 94 SVLENV 99 (241)
T ss_pred cHHHHH
Confidence 444444
No 63
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.62 E-value=3e-15 Score=113.15 Aligned_cols=116 Identities=22% Similarity=0.173 Sum_probs=80.4
Q ss_pred CCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc-----ccccceeEecCCCchhhhhhhhc
Q psy7718 8 EVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG-----SAMEKSVSVGDNGNLYEEWLELK 82 (184)
Q Consensus 8 ~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~l~ 82 (184)
.+++++||++.+|++++|+|+||||||||++.|+|..++.+|.+..++..-. .......+++|...+++ .+..+
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~e 94 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIRE 94 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chHHH
Confidence 7999999999999999999999999999999999998888888776543211 11122345666655544 34444
Q ss_pred CcceecccccchHHHHHHHHHHcCCCCEEEE-ccCCCCCChhHHHHhh
Q psy7718 83 NGCLCCSVKDNGVKAIENLMLKRGKFDYILL-ETTGLADPGPIAKVFW 129 (184)
Q Consensus 83 ~gci~~~~~~~~~~~l~~ll~~~~~~d~iii-E~tg~~dp~~i~~~l~ 129 (184)
|. .+..+...-.|.+.+ ..+|+++++ ||+...||....++..
T Consensus 95 ~l---LS~G~~~rl~la~al--~~~p~llllDEP~~gLD~~~~~~l~~ 137 (171)
T cd03228 95 NI---LSGGQRQRIAIARAL--LRDPPILILDEATSALDPETEALILE 137 (171)
T ss_pred Hh---hCHHHHHHHHHHHHH--hcCCCEEEEECCCcCCCHHHHHHHHH
Confidence 43 111112223455544 358999999 9999999987665543
No 64
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.62 E-value=1.8e-15 Score=118.58 Aligned_cols=125 Identities=18% Similarity=0.130 Sum_probs=83.5
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccC--Ccc---c-ccceeEecCCCchhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFG--EGS---A-MEKSVSVGDNGNLYEE 77 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~--~~~---~-~~~~~~~~~~~~l~~~ 77 (184)
+.++.+++++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++.. ... . .....+++|...++..
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (222)
T cd03224 10 YGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPE 89 (222)
T ss_pred cCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCC
Confidence 445679999999999999999999999999999999999988888888775422 111 1 1224466777666665
Q ss_pred hhhhcCcceeccccc--c----hHHHHHHH------HHH-------------------cCCCCEEEE-ccCCCCCChhHH
Q psy7718 78 WLELKNGCLCCSVKD--N----GVKAIENL------MLK-------------------RGKFDYILL-ETTGLADPGPIA 125 (184)
Q Consensus 78 ~~~l~~gci~~~~~~--~----~~~~l~~l------l~~-------------------~~~~d~iii-E~tg~~dp~~i~ 125 (184)
++..+|..+.+.... . ....+..+ +.+ ..+|+++++ ||+...||....
T Consensus 90 ~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 169 (222)
T cd03224 90 LTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVE 169 (222)
T ss_pred CcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHH
Confidence 556665544322110 0 00111111 000 158999999 999999998765
Q ss_pred HHh
Q psy7718 126 KVF 128 (184)
Q Consensus 126 ~~l 128 (184)
.++
T Consensus 170 ~l~ 172 (222)
T cd03224 170 EIF 172 (222)
T ss_pred HHH
Confidence 544
No 65
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.62 E-value=1.2e-15 Score=123.22 Aligned_cols=125 Identities=18% Similarity=0.114 Sum_probs=83.5
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcc-----c----ccceeEecCCCch
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGS-----A----MEKSVSVGDNGNL 74 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~-----~----~~~~~~~~~~~~l 74 (184)
+++..+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..-.. . .....+++|...+
T Consensus 34 ~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 113 (269)
T cd03294 34 TGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFAL 113 (269)
T ss_pred cCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCccc
Confidence 455678999999999999999999999999999999999988888888775432110 0 1124456776666
Q ss_pred hhhhhhhcCcceecccc---c-chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCC
Q psy7718 75 YEEWLELKNGCLCCSVK---D-NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADP 121 (184)
Q Consensus 75 ~~~~~~l~~gci~~~~~---~-~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp 121 (184)
+..++..+|.++.+... . .....+.+++++ ..+|+++++ ||+...||
T Consensus 114 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~ 193 (269)
T cd03294 114 LPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDP 193 (269)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCH
Confidence 55555555554322111 0 001111111111 268999999 99999999
Q ss_pred hhHHHHh
Q psy7718 122 GPIAKVF 128 (184)
Q Consensus 122 ~~i~~~l 128 (184)
....++.
T Consensus 194 ~~~~~l~ 200 (269)
T cd03294 194 LIRREMQ 200 (269)
T ss_pred HHHHHHH
Confidence 8765544
No 66
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.62 E-value=7.3e-16 Score=129.74 Aligned_cols=124 Identities=15% Similarity=0.085 Sum_probs=85.5
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCC--cc-cccceeEecCCCchhhhhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGE--GS-AMEKSVSVGDNGNLYEEWLE 80 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~--~~-~~~~~~~~~~~~~l~~~~~~ 80 (184)
+.++.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..- .. ..+...+++|+..+++.++.
T Consensus 13 ~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv 92 (369)
T PRK11000 13 YGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSV 92 (369)
T ss_pred eCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCH
Confidence 3456799999999999999999999999999999999999888888887754321 11 11234467888777776666
Q ss_pred hcCcceeccccc----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHHHH
Q psy7718 81 LKNGCLCCSVKD----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIAKV 127 (184)
Q Consensus 81 l~~gci~~~~~~----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~~~ 127 (184)
.+|..+....++ .....+.++++. ..+|+++++ ||+...||....++
T Consensus 93 ~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l 172 (369)
T PRK11000 93 AENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM 172 (369)
T ss_pred HHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 776654322110 111112222211 168999999 99999999865443
No 67
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.62 E-value=1.3e-15 Score=118.69 Aligned_cols=51 Identities=29% Similarity=0.273 Sum_probs=46.2
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
.++.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++
T Consensus 10 ~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g 60 (213)
T cd03235 10 GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFG 60 (213)
T ss_pred CCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECC
Confidence 446799999999999999999999999999999999999888888887755
No 68
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.62 E-value=1.5e-15 Score=117.53 Aligned_cols=124 Identities=19% Similarity=0.116 Sum_probs=79.0
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCC--c--ccccceeEecCCCchhhhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGE--G--SAMEKSVSVGDNGNLYEEWL 79 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~--~--~~~~~~~~~~~~~~l~~~~~ 79 (184)
+.++.+|+++||++++|++++|+|+||||||||++.|+|..++.+|.|..++..- . .......+++|...++...+
T Consensus 11 ~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 90 (200)
T PRK13540 11 YHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLT 90 (200)
T ss_pred eCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCC
Confidence 3456799999999999999999999999999999999999888888887754321 1 11122334555444433333
Q ss_pred hhcCcceeccccc---chHH--------------------------HHHHHHHHcCCCCEEEE-ccCCCCCChhHHHHhh
Q psy7718 80 ELKNGCLCCSVKD---NGVK--------------------------AIENLMLKRGKFDYILL-ETTGLADPGPIAKVFW 129 (184)
Q Consensus 80 ~l~~gci~~~~~~---~~~~--------------------------~l~~ll~~~~~~d~iii-E~tg~~dp~~i~~~l~ 129 (184)
..+|....+.... .... .|.+.+ ..+|+++++ ||+...||....++..
T Consensus 91 v~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral--~~~p~~lilDEP~~~LD~~~~~~l~~ 168 (200)
T PRK13540 91 LRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLW--MSKAKLWLLDEPLVALDELSLLTIIT 168 (200)
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHH--hcCCCEEEEeCCCcccCHHHHHHHHH
Confidence 3333222110000 0000 111111 268999999 9999999987666543
No 69
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=1.4e-15 Score=120.30 Aligned_cols=122 Identities=20% Similarity=0.154 Sum_probs=81.4
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccC--Ccc------cc-cceeEecCCCchhhh
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFG--EGS------AM-EKSVSVGDNGNLYEE 77 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~--~~~------~~-~~~~~~~~~~~l~~~ 77 (184)
..+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++.. ... .. ....+++|+..+++.
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 101 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPD 101 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCC
Confidence 469999999999999999999999999999999999988888888876532 111 00 224466777655554
Q ss_pred hhhhcCcceecc---cc-cchHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhH
Q psy7718 78 WLELKNGCLCCS---VK-DNGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPI 124 (184)
Q Consensus 78 ~~~l~~gci~~~---~~-~~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i 124 (184)
++..+|..+... .. ......+.++++. ..+|+++++ ||+...||...
T Consensus 102 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~ 181 (233)
T PRK11629 102 FTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181 (233)
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence 455555433111 00 0111112222111 268999999 99999999876
Q ss_pred HHHh
Q psy7718 125 AKVF 128 (184)
Q Consensus 125 ~~~l 128 (184)
.++.
T Consensus 182 ~~l~ 185 (233)
T PRK11629 182 DSIF 185 (233)
T ss_pred HHHH
Confidence 6554
No 70
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.62 E-value=1.3e-15 Score=120.56 Aligned_cols=124 Identities=19% Similarity=0.168 Sum_probs=80.4
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccC--Cc--ccccceeEecCCCchhhhhhh
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFG--EG--SAMEKSVSVGDNGNLYEEWLE 80 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~--~~--~~~~~~~~~~~~~~l~~~~~~ 80 (184)
.++.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++.. .. .......+++|...++...+.
T Consensus 12 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~ 91 (236)
T TIGR03864 12 GARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSV 91 (236)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcH
Confidence 34679999999999999999999999999999999999988888888775431 11 111223356666544444444
Q ss_pred hcCcceeccccc----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHHHH
Q psy7718 81 LKNGCLCCSVKD----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIAKV 127 (184)
Q Consensus 81 l~~gci~~~~~~----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~~~ 127 (184)
.+|..+.+..++ .....+.++++. ..+|+++++ ||+...||....++
T Consensus 92 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l 171 (236)
T TIGR03864 92 RQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAI 171 (236)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHH
Confidence 444333221110 001111111110 268999999 99999999876654
Q ss_pred h
Q psy7718 128 F 128 (184)
Q Consensus 128 l 128 (184)
.
T Consensus 172 ~ 172 (236)
T TIGR03864 172 V 172 (236)
T ss_pred H
Confidence 4
No 71
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.62 E-value=1.3e-15 Score=120.55 Aligned_cols=125 Identities=19% Similarity=0.138 Sum_probs=82.0
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccC--Ccc---cc-cceeEecCCCchhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFG--EGS---AM-EKSVSVGDNGNLYEE 77 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~--~~~---~~-~~~~~~~~~~~l~~~ 77 (184)
|.++.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++.. ... .. ....+++|...++..
T Consensus 10 ~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 89 (236)
T cd03219 10 FGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPE 89 (236)
T ss_pred ECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccC
Confidence 334579999999999999999999999999999999999988888888775432 111 01 123356676655555
Q ss_pred hhhhcCcceecccc--------------cchHHHHHHHHHH----------------------------cCCCCEEEE-c
Q psy7718 78 WLELKNGCLCCSVK--------------DNGVKAIENLMLK----------------------------RGKFDYILL-E 114 (184)
Q Consensus 78 ~~~l~~gci~~~~~--------------~~~~~~l~~ll~~----------------------------~~~~d~iii-E 114 (184)
++..+|.++..... ......+.++++. ..+|+++++ |
T Consensus 90 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE 169 (236)
T cd03219 90 LTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDE 169 (236)
T ss_pred CCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 55555543322110 0001112222211 168999999 9
Q ss_pred cCCCCCChhHHHHh
Q psy7718 115 TTGLADPGPIAKVF 128 (184)
Q Consensus 115 ~tg~~dp~~i~~~l 128 (184)
|+...||....++.
T Consensus 170 Pt~~LD~~~~~~l~ 183 (236)
T cd03219 170 PAAGLNPEETEELA 183 (236)
T ss_pred CcccCCHHHHHHHH
Confidence 99999998766554
No 72
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.62 E-value=1.4e-15 Score=120.14 Aligned_cols=121 Identities=18% Similarity=0.127 Sum_probs=80.3
Q ss_pred CCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcc--------cccceeEecCCCchhhhhh
Q psy7718 8 EVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGS--------AMEKSVSVGDNGNLYEEWL 79 (184)
Q Consensus 8 ~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~--------~~~~~~~~~~~~~l~~~~~ 79 (184)
.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..-.. ......+++|...++..++
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRT 98 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCc
Confidence 79999999999999999999999999999999999988888888775432110 0122345667665555455
Q ss_pred hhcCcceeccccc----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHHH
Q psy7718 80 ELKNGCLCCSVKD----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIAK 126 (184)
Q Consensus 80 ~l~~gci~~~~~~----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~~ 126 (184)
..+|..+.+..+. .....+.+++++ ..+|+++++ ||+...||.....
T Consensus 99 ~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~ 178 (233)
T cd03258 99 VFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQS 178 (233)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHH
Confidence 5555433221100 001111111111 268999999 9999999987655
Q ss_pred Hh
Q psy7718 127 VF 128 (184)
Q Consensus 127 ~l 128 (184)
+.
T Consensus 179 l~ 180 (233)
T cd03258 179 IL 180 (233)
T ss_pred HH
Confidence 43
No 73
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=2.5e-15 Score=119.45 Aligned_cols=123 Identities=19% Similarity=0.157 Sum_probs=80.2
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc-----ccccceeEecCCCchhhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG-----SAMEKSVSVGDNGNLYEEW 78 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~l~~~~ 78 (184)
+.++.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..-. .......+++|+..+++ .
T Consensus 13 ~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~ 91 (241)
T PRK14250 13 SFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-G 91 (241)
T ss_pred eCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhch-h
Confidence 34567999999999999999999999999999999999998888888877543211 11122335666655544 3
Q ss_pred hhhcCcceecccccchHHHHHHHHH-----------------------------HcCCCCEEEE-ccCCCCCChhHHHH
Q psy7718 79 LELKNGCLCCSVKDNGVKAIENLML-----------------------------KRGKFDYILL-ETTGLADPGPIAKV 127 (184)
Q Consensus 79 ~~l~~gci~~~~~~~~~~~l~~ll~-----------------------------~~~~~d~iii-E~tg~~dp~~i~~~ 127 (184)
+..+|.++.+..++.....+.+++. -..+|+++++ ||+...||.....+
T Consensus 92 tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l 170 (241)
T PRK14250 92 TVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEII 170 (241)
T ss_pred hHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 4455544332111100001111110 0268999999 99999999866554
No 74
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.61 E-value=1.4e-15 Score=119.36 Aligned_cols=124 Identities=19% Similarity=0.147 Sum_probs=79.1
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCccc-ccceeEecCCCchhhhhhhhcC
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSA-MEKSVSVGDNGNLYEEWLELKN 83 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~~-~~~~~~~~~~~~l~~~~~~l~~ 83 (184)
.++.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..-... .....+++|...++...+..+|
T Consensus 11 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~ 90 (223)
T TIGR03740 11 GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTAREN 90 (223)
T ss_pred CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHH
Confidence 346799999999999999999999999999999999999888888887654321110 1223345565544444444444
Q ss_pred cceecccccchHHHHHHHHH----------------------------HcCCCCEEEE-ccCCCCCChhHHHHh
Q psy7718 84 GCLCCSVKDNGVKAIENLML----------------------------KRGKFDYILL-ETTGLADPGPIAKVF 128 (184)
Q Consensus 84 gci~~~~~~~~~~~l~~ll~----------------------------~~~~~d~iii-E~tg~~dp~~i~~~l 128 (184)
..+.+...+.....+.++++ -..+|+++++ ||+...||.....+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~ 164 (223)
T TIGR03740 91 LKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELR 164 (223)
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHH
Confidence 33221111100001111111 0268999999 999999998665543
No 75
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.61 E-value=3.2e-15 Score=113.18 Aligned_cols=116 Identities=19% Similarity=0.125 Sum_probs=81.6
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc-----ccccceeEecCCCchhhhhhhh
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG-----SAMEKSVSVGDNGNLYEEWLEL 81 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~l 81 (184)
..+++++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..-. .......+++|+..+++. +..
T Consensus 15 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~ 93 (173)
T cd03246 15 PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSG-SIA 93 (173)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccC-cHH
Confidence 46999999999999999999999999999999999998888888877543211 112233456776655543 444
Q ss_pred cCcceecccccchHHHHHHHHHHcCCCCEEEE-ccCCCCCChhHHHHh
Q psy7718 82 KNGCLCCSVKDNGVKAIENLMLKRGKFDYILL-ETTGLADPGPIAKVF 128 (184)
Q Consensus 82 ~~gci~~~~~~~~~~~l~~ll~~~~~~d~iii-E~tg~~dp~~i~~~l 128 (184)
+|. + +..+...-.|.+.+ ..+|+++++ ||+...||....+++
T Consensus 94 ~~l-L--S~G~~qrv~la~al--~~~p~~lllDEPt~~LD~~~~~~l~ 136 (173)
T cd03246 94 ENI-L--SGGQRQRLGLARAL--YGNPRILVLDEPNSHLDVEGERALN 136 (173)
T ss_pred HHC-c--CHHHHHHHHHHHHH--hcCCCEEEEECCccccCHHHHHHHH
Confidence 443 1 11112233455554 358999999 999999998766554
No 76
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.61 E-value=1.4e-15 Score=118.28 Aligned_cols=125 Identities=16% Similarity=0.117 Sum_probs=80.3
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc-ccccceeEecCCCchhhhhhhhcC
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG-SAMEKSVSVGDNGNLYEEWLELKN 83 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~ 83 (184)
.++.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..-. .......+++|...++...+..+|
T Consensus 11 ~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 90 (210)
T cd03269 11 GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQ 90 (210)
T ss_pred CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHH
Confidence 3467999999999999999999999999999999999998888888877643211 111223355666555444444444
Q ss_pred cceeccccc----chHHHHHHHHH----------------------------HcCCCCEEEE-ccCCCCCChhHHHHhh
Q psy7718 84 GCLCCSVKD----NGVKAIENLML----------------------------KRGKFDYILL-ETTGLADPGPIAKVFW 129 (184)
Q Consensus 84 gci~~~~~~----~~~~~l~~ll~----------------------------~~~~~d~iii-E~tg~~dp~~i~~~l~ 129 (184)
..+.+..++ .....+.++++ -..+|+++++ ||+...||....++..
T Consensus 91 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~ 169 (210)
T cd03269 91 LVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKD 169 (210)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHH
Confidence 322111100 00011111111 0258999999 9999999987666543
No 77
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.61 E-value=1.1e-15 Score=128.32 Aligned_cols=125 Identities=17% Similarity=0.088 Sum_probs=89.7
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCe--EEEEecccCCc---ccccceeEecCCCchhhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKK--IAVILNEFGEG---SAMEKSVSVGDNGNLYEEW 78 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~--~~vi~~~~~~~---~~~~~~~~~~~~~~l~~~~ 78 (184)
|.+..+|+++||++.+|++++|+|+||||||||+++|+|..++.+ |.|..++..-. ...+....++|+..+++.+
T Consensus 15 ~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~ 94 (362)
T TIGR03258 15 YGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHL 94 (362)
T ss_pred ECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCC
Confidence 344679999999999999999999999999999999999988888 98887653211 1123455788988888888
Q ss_pred hhhcCcceeccccc----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHH
Q psy7718 79 LELKNGCLCCSVKD----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIA 125 (184)
Q Consensus 79 ~~l~~gci~~~~~~----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~ 125 (184)
+..+|.++....++ .....+.++++. ..+|+++++ ||+...||....
T Consensus 95 tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~ 174 (362)
T TIGR03258 95 KVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRA 174 (362)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHH
Confidence 88888765432211 111122222221 168999999 999999997655
Q ss_pred HHh
Q psy7718 126 KVF 128 (184)
Q Consensus 126 ~~l 128 (184)
++.
T Consensus 175 ~l~ 177 (362)
T TIGR03258 175 NMR 177 (362)
T ss_pred HHH
Confidence 443
No 78
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.61 E-value=1.9e-15 Score=118.98 Aligned_cols=124 Identities=15% Similarity=0.140 Sum_probs=78.8
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc--c---cccceeEecCCCchhhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG--S---AMEKSVSVGDNGNLYEEW 78 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~--~---~~~~~~~~~~~~~l~~~~ 78 (184)
+.++.+++++||++++|++++|+|+||||||||++.|+|..++.+|.|..++..-. . ......+++|...+++.
T Consensus 17 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~- 95 (225)
T PRK10247 17 AGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGD- 95 (225)
T ss_pred eCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccc-
Confidence 34567999999999999999999999999999999999988888888876543211 0 11223345665544432
Q ss_pred hhhcCcceeccccc--chHHHHHHHHH-----------------------------HcCCCCEEEE-ccCCCCCChhHHH
Q psy7718 79 LELKNGCLCCSVKD--NGVKAIENLML-----------------------------KRGKFDYILL-ETTGLADPGPIAK 126 (184)
Q Consensus 79 ~~l~~gci~~~~~~--~~~~~l~~ll~-----------------------------~~~~~d~iii-E~tg~~dp~~i~~ 126 (184)
+..+|..+.+..+. .....+.++++ -..+|+++++ ||+...||.....
T Consensus 96 tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 175 (225)
T PRK10247 96 TVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHN 175 (225)
T ss_pred cHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 33343322111100 00001111110 0268999999 9999999987665
Q ss_pred Hh
Q psy7718 127 VF 128 (184)
Q Consensus 127 ~l 128 (184)
+.
T Consensus 176 l~ 177 (225)
T PRK10247 176 VN 177 (225)
T ss_pred HH
Confidence 54
No 79
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.61 E-value=7.4e-16 Score=120.18 Aligned_cols=81 Identities=20% Similarity=0.099 Sum_probs=68.9
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcc--------cccceeEecCCCchhh
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGS--------AMEKSVSVGDNGNLYE 76 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~--------~~~~~~~~~~~~~l~~ 76 (184)
+++.+|++|||++++|+.++|+|++|||||||+|+|.+...+..|.|..++..-.. ...+...++|.+.+.+
T Consensus 15 ~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~ 94 (258)
T COG3638 15 GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVP 94 (258)
T ss_pred CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCccc
Confidence 77899999999999999999999999999999999999988999999988754221 2344567899999988
Q ss_pred hhhhhcCcc
Q psy7718 77 EWLELKNGC 85 (184)
Q Consensus 77 ~~~~l~~gc 85 (184)
+++.++|..
T Consensus 95 r~sv~~NVl 103 (258)
T COG3638 95 RLSVLENVL 103 (258)
T ss_pred ccHHHHHHH
Confidence 888888863
No 80
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.61 E-value=1.6e-15 Score=119.59 Aligned_cols=125 Identities=21% Similarity=0.101 Sum_probs=82.9
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc--c----cccceeEecCCCchhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG--S----AMEKSVSVGDNGNLYEE 77 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~--~----~~~~~~~~~~~~~l~~~ 77 (184)
+.++.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..-. . ......+++|+..++..
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (230)
T TIGR03410 10 YGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPR 89 (230)
T ss_pred eCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCC
Confidence 34467999999999999999999999999999999999998888888777542211 1 11223456777666655
Q ss_pred hhhhcCcceeccccc----chHHHHHHHH-------H-------------------HcCCCCEEEE-ccCCCCCChhHHH
Q psy7718 78 WLELKNGCLCCSVKD----NGVKAIENLM-------L-------------------KRGKFDYILL-ETTGLADPGPIAK 126 (184)
Q Consensus 78 ~~~l~~gci~~~~~~----~~~~~l~~ll-------~-------------------~~~~~d~iii-E~tg~~dp~~i~~ 126 (184)
++..+|.++.+.... .....+.+.+ . -..+|+++++ ||+...||....+
T Consensus 90 ~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~ 169 (230)
T TIGR03410 90 LTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKD 169 (230)
T ss_pred CcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHH
Confidence 555555543322110 0111111110 0 0168999999 9999999987665
Q ss_pred Hh
Q psy7718 127 VF 128 (184)
Q Consensus 127 ~l 128 (184)
+.
T Consensus 170 l~ 171 (230)
T TIGR03410 170 IG 171 (230)
T ss_pred HH
Confidence 54
No 81
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.61 E-value=1.6e-15 Score=118.09 Aligned_cols=124 Identities=16% Similarity=0.094 Sum_probs=81.0
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc----ccccceeEecCCCchhhhhhh
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG----SAMEKSVSVGDNGNLYEEWLE 80 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~l~~~~~~ 80 (184)
.++.+++++||++.++ +++|+|+||||||||++.|+|..++.+|.|..++..-. .......+++|+..++..++.
T Consensus 11 ~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (211)
T cd03264 11 GKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTV 89 (211)
T ss_pred CCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCH
Confidence 3457999999999999 99999999999999999999998888888887653211 111223356666555544444
Q ss_pred hcCcceecccc----cchHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHHHH
Q psy7718 81 LKNGCLCCSVK----DNGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIAKV 127 (184)
Q Consensus 81 l~~gci~~~~~----~~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~~~ 127 (184)
.+|..+..... .+....+.++++. ..+|+++++ ||+...||.....+
T Consensus 90 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l 169 (211)
T cd03264 90 REFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRF 169 (211)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 44433221110 0001111111110 268999999 99999999877665
Q ss_pred hh
Q psy7718 128 FW 129 (184)
Q Consensus 128 l~ 129 (184)
..
T Consensus 170 ~~ 171 (211)
T cd03264 170 RN 171 (211)
T ss_pred HH
Confidence 44
No 82
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.61 E-value=2.3e-15 Score=119.38 Aligned_cols=53 Identities=19% Similarity=0.107 Sum_probs=47.8
Q ss_pred CCCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 3 SDSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 3 ~~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
++..+++|+++||++.+|++++|+|+||||||||++.|++..+|.+|.|..++
T Consensus 30 ~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g 82 (236)
T cd03267 30 KYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAG 82 (236)
T ss_pred ccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECC
Confidence 45667899999999999999999999999999999999999888888887654
No 83
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.61 E-value=1.8e-15 Score=128.44 Aligned_cols=124 Identities=23% Similarity=0.147 Sum_probs=82.7
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc-----ccccceeEecCCCchhhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG-----SAMEKSVSVGDNGNLYEEW 78 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~l~~~~ 78 (184)
|.++.+|+++||++++|++++|+|+||||||||+|.|.|..++.+|.|..++..-. ...++..+++|...++..+
T Consensus 13 y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~ 92 (402)
T PRK09536 13 FGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEF 92 (402)
T ss_pred ECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCC
Confidence 45678999999999999999999999999999999999998888888887653211 1122344667766554444
Q ss_pred hhhcCcceecc-----c---ccchHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCC
Q psy7718 79 LELKNGCLCCS-----V---KDNGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADP 121 (184)
Q Consensus 79 ~~l~~gci~~~-----~---~~~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp 121 (184)
+..++..+... + .......+.++++. .++|+++++ ||+...||
T Consensus 93 tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~ 172 (402)
T PRK09536 93 DVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDI 172 (402)
T ss_pred CHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence 44444332110 0 01111122222221 268999999 99999999
Q ss_pred hhHHHH
Q psy7718 122 GPIAKV 127 (184)
Q Consensus 122 ~~i~~~ 127 (184)
....++
T Consensus 173 ~~~~~l 178 (402)
T PRK09536 173 NHQVRT 178 (402)
T ss_pred HHHHHH
Confidence 755443
No 84
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.61 E-value=1.5e-15 Score=128.02 Aligned_cols=124 Identities=15% Similarity=0.083 Sum_probs=88.7
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCC--cc-cccceeEecCCCchhhhhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGE--GS-AMEKSVSVGDNGNLYEEWLE 80 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~--~~-~~~~~~~~~~~~~l~~~~~~ 80 (184)
+.++.+|+++||++.+|++++|+|+||||||||+++|+|..++.+|.|..++..- .. ..+....++|+..+++.++.
T Consensus 24 ~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 103 (375)
T PRK09452 24 FDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTV 103 (375)
T ss_pred ECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCH
Confidence 3456789999999999999999999999999999999999888889888765321 11 12345578899888888888
Q ss_pred hcCcceeccccc----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHHHH
Q psy7718 81 LKNGCLCCSVKD----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIAKV 127 (184)
Q Consensus 81 l~~gci~~~~~~----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~~~ 127 (184)
.+|.++....++ .....+.++++. ..+|+++++ ||+...|+....++
T Consensus 104 ~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l 183 (375)
T PRK09452 104 FENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQM 183 (375)
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHH
Confidence 888765332111 111122222211 168999999 99999998754443
No 85
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.61 E-value=1.8e-15 Score=117.75 Aligned_cols=49 Identities=20% Similarity=0.236 Sum_probs=45.2
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
+.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 62 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDG 62 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 6799999999999999999999999999999999999888888887754
No 86
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.61 E-value=3e-15 Score=114.83 Aligned_cols=52 Identities=25% Similarity=0.190 Sum_probs=47.1
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
++++.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++
T Consensus 2 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g 53 (190)
T TIGR01166 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDG 53 (190)
T ss_pred CCccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECC
Confidence 3557899999999999999999999999999999999999888888887754
No 87
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.61 E-value=1.9e-15 Score=117.65 Aligned_cols=126 Identities=24% Similarity=0.199 Sum_probs=82.1
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCC--c-----ccccceeEecCCCchhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGE--G-----SAMEKSVSVGDNGNLYE 76 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~--~-----~~~~~~~~~~~~~~l~~ 76 (184)
+.++.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..- . .......+++|+..++.
T Consensus 10 ~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (213)
T cd03262 10 FGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFP 89 (213)
T ss_pred ECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCC
Confidence 3446799999999999999999999999999999999999888888887754311 0 11122345667665555
Q ss_pred hhhhhcCcceecc-ccc----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCCh
Q psy7718 77 EWLELKNGCLCCS-VKD----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPG 122 (184)
Q Consensus 77 ~~~~l~~gci~~~-~~~----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~ 122 (184)
..+..+|.+.... .++ .....+.+++++ ..+|+++++ ||+...||.
T Consensus 90 ~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~ 169 (213)
T cd03262 90 HLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPE 169 (213)
T ss_pred CCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 4455555433210 000 000111111110 268999999 999999998
Q ss_pred hHHHHhh
Q psy7718 123 PIAKVFW 129 (184)
Q Consensus 123 ~i~~~l~ 129 (184)
...++..
T Consensus 170 ~~~~l~~ 176 (213)
T cd03262 170 LVGEVLD 176 (213)
T ss_pred HHHHHHH
Confidence 7665543
No 88
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.61 E-value=1.7e-15 Score=118.64 Aligned_cols=123 Identities=20% Similarity=0.165 Sum_probs=80.6
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccC--Cccc------c-cceeEecCCCchhhh
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFG--EGSA------M-EKSVSVGDNGNLYEE 77 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~--~~~~------~-~~~~~~~~~~~l~~~ 77 (184)
+.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++.. .... . ....+++|...+++.
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 97 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPD 97 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCC
Confidence 469999999999999999999999999999999999988888888775422 1110 1 223456676655554
Q ss_pred hhhhcCcceecc---cc-cchHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhH
Q psy7718 78 WLELKNGCLCCS---VK-DNGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPI 124 (184)
Q Consensus 78 ~~~l~~gci~~~---~~-~~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i 124 (184)
++..+|..+... .. ......+.+++.. ..+|+++++ ||+...||...
T Consensus 98 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~ 177 (221)
T TIGR02211 98 FTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNA 177 (221)
T ss_pred CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHH
Confidence 455555433111 00 0001111111110 268999999 99999999876
Q ss_pred HHHhh
Q psy7718 125 AKVFW 129 (184)
Q Consensus 125 ~~~l~ 129 (184)
.++..
T Consensus 178 ~~l~~ 182 (221)
T TIGR02211 178 KIIFD 182 (221)
T ss_pred HHHHH
Confidence 66543
No 89
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.60 E-value=2.2e-15 Score=114.96 Aligned_cols=118 Identities=16% Similarity=0.151 Sum_probs=81.7
Q ss_pred CCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcc------cccceeEecCCC---chhhhhh
Q psy7718 9 VPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGS------AMEKSVSVGDNG---NLYEEWL 79 (184)
Q Consensus 9 ~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~------~~~~~~~~~~~~---~l~~~~~ 79 (184)
+++++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..-.. ......+++|+. .++...+
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t 94 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLS 94 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCc
Confidence 7999999999999999999999999999999999988888888776532111 112334566653 3444455
Q ss_pred hhcCcceecccc--cchHHHHHHHHHHcCCCCEEEE-ccCCCCCChhHHHHh
Q psy7718 80 ELKNGCLCCSVK--DNGVKAIENLMLKRGKFDYILL-ETTGLADPGPIAKVF 128 (184)
Q Consensus 80 ~l~~gci~~~~~--~~~~~~l~~ll~~~~~~d~iii-E~tg~~dp~~i~~~l 128 (184)
..+|..+.+.+. ....-.|.+.+ ..+|+++++ ||+...||....++.
T Consensus 95 ~~e~l~~~~~LS~G~~qrl~la~al--~~~p~llllDEP~~~LD~~~~~~l~ 144 (182)
T cd03215 95 VAENIALSSLLSGGNQQKVVLARWL--ARDPRVLILDEPTRGVDVGAKAEIY 144 (182)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHH--ccCCCEEEECCCCcCCCHHHHHHHH
Confidence 555544332121 11222445544 358999999 999999998766554
No 90
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.60 E-value=2.1e-15 Score=118.74 Aligned_cols=121 Identities=19% Similarity=0.102 Sum_probs=78.5
Q ss_pred CCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc--cc------c-cceeEecCCCchhhhh
Q psy7718 8 EVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG--SA------M-EKSVSVGDNGNLYEEW 78 (184)
Q Consensus 8 ~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~--~~------~-~~~~~~~~~~~l~~~~ 78 (184)
.+|+++||++.+|++++|+|+||||||||++.|+|..++..|.|..++..-. .. . ....+++|...++..+
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~ 103 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTL 103 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCc
Confidence 5999999999999999999999999999999999998888888877543211 10 0 1234566665554444
Q ss_pred hhhcCcceecccc----cchHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHH
Q psy7718 79 LELKNGCLCCSVK----DNGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIA 125 (184)
Q Consensus 79 ~~l~~gci~~~~~----~~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~ 125 (184)
+..+|..+....+ ......+.++++. ..+|+++++ ||+...||....
T Consensus 104 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~ 183 (228)
T PRK10584 104 NALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGD 183 (228)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Confidence 4444433211000 0001111111110 268999999 999999998766
Q ss_pred HHh
Q psy7718 126 KVF 128 (184)
Q Consensus 126 ~~l 128 (184)
++.
T Consensus 184 ~l~ 186 (228)
T PRK10584 184 KIA 186 (228)
T ss_pred HHH
Confidence 554
No 91
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.60 E-value=9.1e-15 Score=110.11 Aligned_cols=115 Identities=17% Similarity=0.076 Sum_probs=80.2
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcccccceeEecCCCchhhhhhhhcCcc
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLELKNGC 85 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~gc 85 (184)
++.+|+++||++.+|++++|+|+||||||||++.|++..++.+|.|..+.. ....+++|+..++ ..+..+|.+
T Consensus 13 ~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~------~~i~~~~q~~~~~-~~tv~~nl~ 85 (166)
T cd03223 13 GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG------EDLLFLPQRPYLP-LGTLREQLI 85 (166)
T ss_pred CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC------ceEEEECCCCccc-cccHHHHhh
Confidence 357999999999999999999999999999999999998888888776532 1223455554433 234455543
Q ss_pred e--eccccc--chHHHHHHHHHHcCCCCEEEE-ccCCCCCChhHHHHhh
Q psy7718 86 L--CCSVKD--NGVKAIENLMLKRGKFDYILL-ETTGLADPGPIAKVFW 129 (184)
Q Consensus 86 i--~~~~~~--~~~~~l~~ll~~~~~~d~iii-E~tg~~dp~~i~~~l~ 129 (184)
+ ...+.+ ...-.+.+.+ ..+|+++++ ||+...||....++..
T Consensus 86 ~~~~~~LS~G~~~rv~laral--~~~p~~lllDEPt~~LD~~~~~~l~~ 132 (166)
T cd03223 86 YPWDDVLSGGEQQRLAFARLL--LHKPKFVFLDEATSALDEESEDRLYQ 132 (166)
T ss_pred ccCCCCCCHHHHHHHHHHHHH--HcCCCEEEEECCccccCHHHHHHHHH
Confidence 2 111211 1223455554 358999999 9999999987766543
No 92
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.60 E-value=2.7e-15 Score=114.37 Aligned_cols=89 Identities=20% Similarity=0.119 Sum_probs=75.1
Q ss_pred CCCCCC--CCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcccccceeEecCCCchhhhhhh
Q psy7718 3 SDSDSE--VPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLE 80 (184)
Q Consensus 3 ~~~~~~--~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 80 (184)
||++++ +|+++|+++.+++.+++.||+|+||||++|.++|...|.++.|-.++..-.....++..++|+.++.+++..
T Consensus 12 ~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~ 91 (259)
T COG4525 12 SYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNV 91 (259)
T ss_pred ecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHH
Confidence 566766 999999999999999999999999999999999999999998888765444444566779999999999999
Q ss_pred hcCcceecccc
Q psy7718 81 LKNGCLCCSVK 91 (184)
Q Consensus 81 l~~gci~~~~~ 91 (184)
.+|..+--.++
T Consensus 92 ~dNvafgL~l~ 102 (259)
T COG4525 92 IDNVAFGLQLR 102 (259)
T ss_pred HHHHHHHHHhc
Confidence 99976554443
No 93
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=3.8e-15 Score=118.30 Aligned_cols=124 Identities=17% Similarity=0.176 Sum_probs=82.6
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc--c----cccceeEecCCCchhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG--S----AMEKSVSVGDNGNLYEE 77 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~--~----~~~~~~~~~~~~~l~~~ 77 (184)
+.++.+|+++||++++|++++|+|+||||||||++.|+|..++.+|.|..++..-. . ......+++|...++..
T Consensus 13 ~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (241)
T PRK10895 13 YKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRR 92 (241)
T ss_pred eCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCccccc
Confidence 34567999999999999999999999999999999999998888888877543211 1 11224456776666555
Q ss_pred hhhhcCcceeccccc-----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChh
Q psy7718 78 WLELKNGCLCCSVKD-----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGP 123 (184)
Q Consensus 78 ~~~l~~gci~~~~~~-----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~ 123 (184)
++..+|.+..+.... .....+.++++. ..+|+++++ ||+...||..
T Consensus 93 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~ 172 (241)
T PRK10895 93 LSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIS 172 (241)
T ss_pred CcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 555565543321110 001111111110 168999999 9999999987
Q ss_pred HHHH
Q psy7718 124 IAKV 127 (184)
Q Consensus 124 i~~~ 127 (184)
..++
T Consensus 173 ~~~l 176 (241)
T PRK10895 173 VIDI 176 (241)
T ss_pred HHHH
Confidence 6543
No 94
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.60 E-value=2.2e-15 Score=117.17 Aligned_cols=131 Identities=18% Similarity=0.159 Sum_probs=92.4
Q ss_pred CCCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcc------cccceeEecCCCchhh
Q psy7718 3 SDSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGS------AMEKSVSVGDNGNLYE 76 (184)
Q Consensus 3 ~~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~------~~~~~~~~~~~~~l~~ 76 (184)
+|+...+|++|||++++|++++++|+||+|||||++.|+|..++.+|.|...+..-.+ ...-..+++|...+++
T Consensus 12 ~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~ 91 (237)
T COG0410 12 GYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFP 91 (237)
T ss_pred cccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchh
Confidence 4777889999999999999999999999999999999999998888888875432111 1122336777777888
Q ss_pred hhhhhcCcceecccccc--h----H-------HHHHHHHHH-------------------cCCCCEEEE-ccCCCCCChh
Q psy7718 77 EWLELKNGCLCCSVKDN--G----V-------KAIENLMLK-------------------RGKFDYILL-ETTGLADPGP 123 (184)
Q Consensus 77 ~~~~l~~gci~~~~~~~--~----~-------~~l~~ll~~-------------------~~~~d~iii-E~tg~~dp~~ 123 (184)
.++..+|.-+-...+.+ . . +.|.+...+ ..+|+++++ |||-+..|.=
T Consensus 92 ~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~i 171 (237)
T COG0410 92 RLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKI 171 (237)
T ss_pred hCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHH
Confidence 88888887754322211 0 0 112111110 168999999 9999999976
Q ss_pred HHHHhhhccc
Q psy7718 124 IAKVFWLDKE 133 (184)
Q Consensus 124 i~~~l~~~~~ 133 (184)
+.+++..-..
T Consensus 172 v~~I~~~i~~ 181 (237)
T COG0410 172 VEEIFEAIKE 181 (237)
T ss_pred HHHHHHHHHH
Confidence 6665544333
No 95
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.60 E-value=3e-15 Score=118.23 Aligned_cols=119 Identities=21% Similarity=0.110 Sum_probs=75.4
Q ss_pred CccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcccccceeEecCCCchhhhhhhhcCcceec-
Q psy7718 10 PDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLELKNGCLCC- 88 (184)
Q Consensus 10 l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~gci~~- 88 (184)
|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..-........+++|...++..++..+|..+..
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 5799999999999999999999999999999999888888887754321111111234566554444444444433211
Q ss_pred ----cccc-chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHHHHh
Q psy7718 89 ----SVKD-NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIAKVF 128 (184)
Q Consensus 89 ----~~~~-~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~~~l 128 (184)
.... .....+.+++++ ..+|+++++ ||+...||....++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~ 154 (230)
T TIGR01184 81 RVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQ 154 (230)
T ss_pred hcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHH
Confidence 0000 000111111110 268999999 999999998765543
No 96
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.60 E-value=6.7e-15 Score=111.87 Aligned_cols=117 Identities=17% Similarity=0.148 Sum_probs=80.7
Q ss_pred CCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc----ccccceeEecCCCchhhhhhhhcC
Q psy7718 8 EVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG----SAMEKSVSVGDNGNLYEEWLELKN 83 (184)
Q Consensus 8 ~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~l~~~~~~l~~ 83 (184)
.+++++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..-. .......+++|.+.+++ .+..+|
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~ 94 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFD-TTLRNN 94 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeec-ccHHHh
Confidence 6999999999999999999999999999999999998888888877643211 11122345677665543 344444
Q ss_pred cceecccc--cchHHHHHHHHHHcCCCCEEEE-ccCCCCCChhHHHHhh
Q psy7718 84 GCLCCSVK--DNGVKAIENLMLKRGKFDYILL-ETTGLADPGPIAKVFW 129 (184)
Q Consensus 84 gci~~~~~--~~~~~~l~~ll~~~~~~d~iii-E~tg~~dp~~i~~~l~ 129 (184)
. .-.+. ....-.|.+.+ ..+|+++++ ||+...|+.....++.
T Consensus 95 i--~~~LS~G~~qrv~laral--~~~p~~lllDEP~~~LD~~~~~~l~~ 139 (178)
T cd03247 95 L--GRRFSGGERQRLALARIL--LQDAPIVLLDEPTVGLDPITERQLLS 139 (178)
T ss_pred h--cccCCHHHHHHHHHHHHH--hcCCCEEEEECCcccCCHHHHHHHHH
Confidence 3 11111 11223455554 358999999 9999999987655443
No 97
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.60 E-value=3.7e-15 Score=130.27 Aligned_cols=123 Identities=19% Similarity=0.114 Sum_probs=82.1
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccC--Ccc---cc-cceeEecCCCchhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFG--EGS---AM-EKSVSVGDNGNLYEE 77 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~--~~~---~~-~~~~~~~~~~~l~~~ 77 (184)
|+++.+|+++||++.+|++++|+|+||||||||++.|.|..++.+|.|..++.. ... .. ....+++|+..++..
T Consensus 21 ~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 100 (510)
T PRK15439 21 YSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPN 100 (510)
T ss_pred eCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCC
Confidence 445679999999999999999999999999999999999988888888775422 111 01 123356676555555
Q ss_pred hhhhcCcceecccccch------------------------------HHHHHHHHHHcCCCCEEEE-ccCCCCCChhHHH
Q psy7718 78 WLELKNGCLCCSVKDNG------------------------------VKAIENLMLKRGKFDYILL-ETTGLADPGPIAK 126 (184)
Q Consensus 78 ~~~l~~gci~~~~~~~~------------------------------~~~l~~ll~~~~~~d~iii-E~tg~~dp~~i~~ 126 (184)
++..+|..+........ .-.|.+.+ ..+|+++++ ||+...||....+
T Consensus 101 ~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL--~~~p~lllLDEPt~~LD~~~~~~ 178 (510)
T PRK15439 101 LSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGL--MRDSRILILDEPTASLTPAETER 178 (510)
T ss_pred CcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHH--HcCCCEEEEECCCCCCCHHHHHH
Confidence 55555443221100000 11222222 258999999 9999999987655
Q ss_pred Hh
Q psy7718 127 VF 128 (184)
Q Consensus 127 ~l 128 (184)
+.
T Consensus 179 l~ 180 (510)
T PRK15439 179 LF 180 (510)
T ss_pred HH
Confidence 43
No 98
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=1.9e-15 Score=127.48 Aligned_cols=122 Identities=14% Similarity=0.107 Sum_probs=89.6
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc---ccccceeEecCCCchhhhhhhh
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG---SAMEKSVSVGDNGNLYEEWLEL 81 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~---~~~~~~~~~~~~~~l~~~~~~l 81 (184)
.+..+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..-. ...+....++|+..+++.++..
T Consensus 30 ~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~ 109 (377)
T PRK11607 30 DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVE 109 (377)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHH
Confidence 3457899999999999999999999999999999999999888898887653211 1123455788998899888888
Q ss_pred cCcceeccccc----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHHH
Q psy7718 82 KNGCLCCSVKD----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIAK 126 (184)
Q Consensus 82 ~~gci~~~~~~----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~~ 126 (184)
+|.++.+..++ .....+.++++. ..+|+++++ ||+...|+....+
T Consensus 110 eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~ 187 (377)
T PRK11607 110 QNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDR 187 (377)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 88765443211 111222232221 168999999 9999999876544
No 99
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.59 E-value=5.4e-15 Score=115.55 Aligned_cols=123 Identities=20% Similarity=0.161 Sum_probs=79.4
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc--ccccceeEecCCCchhhhhhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG--SAMEKSVSVGDNGNLYEEWLEL 81 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~--~~~~~~~~~~~~~~l~~~~~~l 81 (184)
+.++.+++++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..-. .......++.|...++..++..
T Consensus 21 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~ 100 (214)
T PRK13543 21 RNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTL 100 (214)
T ss_pred cCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHH
Confidence 34567999999999999999999999999999999999998888888877643211 1111223455554444433444
Q ss_pred cCcceecccccc-hHH------------------------------HHHHHHHHcCCCCEEEE-ccCCCCCChhHHHHh
Q psy7718 82 KNGCLCCSVKDN-GVK------------------------------AIENLMLKRGKFDYILL-ETTGLADPGPIAKVF 128 (184)
Q Consensus 82 ~~gci~~~~~~~-~~~------------------------------~l~~ll~~~~~~d~iii-E~tg~~dp~~i~~~l 128 (184)
+|..+.+..++. ... .+.+.+ ..+|+++++ ||+...||.....+.
T Consensus 101 e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral--~~~p~llllDEPt~~LD~~~~~~l~ 177 (214)
T PRK13543 101 ENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLW--LSPAPLWLLDEPYANLDLEGITLVN 177 (214)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHH--hcCCCEEEEeCCcccCCHHHHHHHH
Confidence 443222111100 000 111111 268999999 999999998766554
No 100
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.59 E-value=4.8e-15 Score=111.32 Aligned_cols=107 Identities=19% Similarity=0.202 Sum_probs=74.6
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCccc------ccceeEecCCCchhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSA------MEKSVSVGDNGNLYEE 77 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~~------~~~~~~~~~~~~l~~~ 77 (184)
|.++++++++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..-... .....+++|
T Consensus 10 ~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q------- 82 (163)
T cd03216 10 FGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQ------- 82 (163)
T ss_pred ECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEe-------
Confidence 3456799999999999999999999999999999999999888888887654321110 001111111
Q ss_pred hhhhcCcceecccccchHHHHHHHHHHcCCCCEEEE-ccCCCCCChhHHHHhh
Q psy7718 78 WLELKNGCLCCSVKDNGVKAIENLMLKRGKFDYILL-ETTGLADPGPIAKVFW 129 (184)
Q Consensus 78 ~~~l~~gci~~~~~~~~~~~l~~ll~~~~~~d~iii-E~tg~~dp~~i~~~l~ 129 (184)
++.| ....-.+.+.+ ..+|+++++ ||+...|+....++..
T Consensus 83 ---LS~G-------~~qrl~laral--~~~p~illlDEP~~~LD~~~~~~l~~ 123 (163)
T cd03216 83 ---LSVG-------ERQMVEIARAL--ARNARLLILDEPTAALTPAEVERLFK 123 (163)
T ss_pred ---cCHH-------HHHHHHHHHHH--hcCCCEEEEECCCcCCCHHHHHHHHH
Confidence 2222 12233455554 358999999 9999999987666543
No 101
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.59 E-value=5.3e-15 Score=117.14 Aligned_cols=143 Identities=17% Similarity=0.115 Sum_probs=89.9
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc------ccccceeEecCCCc--hhhhh
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG------SAMEKSVSVGDNGN--LYEEW 78 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~------~~~~~~~~~~~~~~--l~~~~ 78 (184)
..+++++||++.+|+.++|+|+||||||||++++.|...|..+.|..++.... ...++...++|++. ++..
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~- 95 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGP- 95 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccC-
Confidence 58999999999999999999999999999999999999998888877654311 22334456777653 1111
Q ss_pred hhhcCcceec---cccc-chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHH
Q psy7718 79 LELKNGCLCC---SVKD-NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIA 125 (184)
Q Consensus 79 ~~l~~gci~~---~~~~-~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~ 125 (184)
+..+..++.+ .+.. +....+.+.+.. .-+|+++++ |||.+.||....
T Consensus 96 tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~ 175 (235)
T COG1122 96 TVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRR 175 (235)
T ss_pred cHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHH
Confidence 1111122221 1111 111122222111 147999999 999999999887
Q ss_pred HHhhhccccCCceEeCcEEEEEcCC
Q psy7718 126 KVFWLDKELGSDIYLDGIVTVVDCK 150 (184)
Q Consensus 126 ~~l~~~~~~~~~~~l~~vi~vvDa~ 150 (184)
+++..-..+.......-+++.+|..
T Consensus 176 ~l~~~l~~L~~~~~~tii~~tHd~~ 200 (235)
T COG1122 176 ELLELLKKLKEEGGKTIIIVTHDLE 200 (235)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCcHH
Confidence 7765444444432233355555543
No 102
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.59 E-value=3.8e-15 Score=119.05 Aligned_cols=51 Identities=18% Similarity=0.158 Sum_probs=45.9
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
.++.+|+++||++.+|++++|+|+||||||||++.|+|...+.+|.|..++
T Consensus 11 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 61 (252)
T TIGR03005 11 GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEG 61 (252)
T ss_pred CCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 346799999999999999999999999999999999999888888877654
No 103
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.59 E-value=3e-15 Score=120.02 Aligned_cols=124 Identities=20% Similarity=0.187 Sum_probs=82.8
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc------------------cccccee
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG------------------SAMEKSV 66 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~------------------~~~~~~~ 66 (184)
.++.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..-. .......
T Consensus 16 ~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (257)
T PRK10619 16 GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLT 95 (257)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceE
Confidence 3467999999999999999999999999999999999998888888877653110 0112334
Q ss_pred EecCCCchhhhhhhhcCcceec-c---cc-cchHHHHHHHHHH-----------------------------cCCCCEEE
Q psy7718 67 SVGDNGNLYEEWLELKNGCLCC-S---VK-DNGVKAIENLMLK-----------------------------RGKFDYIL 112 (184)
Q Consensus 67 ~~~~~~~l~~~~~~l~~gci~~-~---~~-~~~~~~l~~ll~~-----------------------------~~~~d~ii 112 (184)
+++|+..+++.++..+|.++.. . .. ......+.+++++ ..+|++++
T Consensus 96 ~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 175 (257)
T PRK10619 96 MVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLL 175 (257)
T ss_pred EEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 6677766665556666654321 0 10 0001111111110 25899999
Q ss_pred E-ccCCCCCChhHHHHh
Q psy7718 113 L-ETTGLADPGPIAKVF 128 (184)
Q Consensus 113 i-E~tg~~dp~~i~~~l 128 (184)
+ ||+...||....++.
T Consensus 176 lDEPt~~LD~~~~~~l~ 192 (257)
T PRK10619 176 FDEPTSALDPELVGEVL 192 (257)
T ss_pred EeCCcccCCHHHHHHHH
Confidence 9 999999998766554
No 104
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.59 E-value=4.1e-15 Score=120.06 Aligned_cols=122 Identities=20% Similarity=0.178 Sum_probs=88.9
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCC-----c---ccccceeEecCCCchhhhh
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGE-----G---SAMEKSVSVGDNGNLYEEW 78 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~-----~---~~~~~~~~~~~~~~l~~~~ 78 (184)
..++++|||++++|++++|+|++|||||||+|++.+..+|.+|.|++++..- . ...++..-++|.+.+....
T Consensus 19 ~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssr 98 (339)
T COG1135 19 VTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSR 98 (339)
T ss_pred eeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccc
Confidence 4699999999999999999999999999999999999999999999876221 1 1123344678888888777
Q ss_pred hhhcCcceeccccc----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHH
Q psy7718 79 LELKNGCLCCSVKD----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIA 125 (184)
Q Consensus 79 ~~l~~gci~~~~~~----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~ 125 (184)
++.+|..+--.+.+ +......++++. ..+|++++- |+|...||..-.
T Consensus 99 TV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~ 178 (339)
T COG1135 99 TVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQ 178 (339)
T ss_pred hHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHH
Confidence 77777654432221 222233333321 268999999 999999998554
Q ss_pred HHh
Q psy7718 126 KVF 128 (184)
Q Consensus 126 ~~l 128 (184)
.++
T Consensus 179 sIL 181 (339)
T COG1135 179 SIL 181 (339)
T ss_pred HHH
Confidence 444
No 105
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.58 E-value=7.5e-15 Score=113.19 Aligned_cols=121 Identities=20% Similarity=0.141 Sum_probs=82.4
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcC--CCCeEEEEecccCCc--ccccceeEecCCCchhhhhhhhc
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQ--HDKKIAVILNEFGEG--SAMEKSVSVGDNGNLYEEWLELK 82 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~--~~~~~~vi~~~~~~~--~~~~~~~~~~~~~~l~~~~~~l~ 82 (184)
+.+|+++||++.+|++++|+|+||||||||++.|++.. ++.+|.|..++..-. .......+++|+..++..++..+
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 101 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRE 101 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHH
Confidence 67999999999999999999999999999999999998 888888877543211 11222335566655544444444
Q ss_pred Ccceec---ccc--cchHHHHHHHHHHcCCCCEEEE-ccCCCCCChhHHHHhh
Q psy7718 83 NGCLCC---SVK--DNGVKAIENLMLKRGKFDYILL-ETTGLADPGPIAKVFW 129 (184)
Q Consensus 83 ~gci~~---~~~--~~~~~~l~~ll~~~~~~d~iii-E~tg~~dp~~i~~~l~ 129 (184)
|.-+.+ .+. ....-.|.+.+ ..+|+++++ ||+...|+.....++.
T Consensus 102 ~i~~~~~~~~LS~G~~qrv~laral--~~~p~illlDEP~~~LD~~~~~~l~~ 152 (194)
T cd03213 102 TLMFAAKLRGLSGGERKRVSIALEL--VSNPSLLFLDEPTSGLDSSSALQVMS 152 (194)
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHH--HcCCCEEEEeCCCcCCCHHHHHHHHH
Confidence 432211 111 11122445544 358999999 9999999987665543
No 106
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.58 E-value=5.1e-15 Score=117.55 Aligned_cols=125 Identities=16% Similarity=0.127 Sum_probs=82.3
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc--c---cc-cceeEecCCCchhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG--S---AM-EKSVSVGDNGNLYEE 77 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~--~---~~-~~~~~~~~~~~l~~~ 77 (184)
+.++.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..-. . .. ....+++|...++..
T Consensus 12 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 91 (242)
T TIGR03411 12 FDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFEN 91 (242)
T ss_pred cCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCC
Confidence 33467999999999999999999999999999999999998888888877653211 1 11 123356676655555
Q ss_pred hhhhcCcceecc--------c----ccchHHHHHHHHHH----------------------------cCCCCEEEE-ccC
Q psy7718 78 WLELKNGCLCCS--------V----KDNGVKAIENLMLK----------------------------RGKFDYILL-ETT 116 (184)
Q Consensus 78 ~~~l~~gci~~~--------~----~~~~~~~l~~ll~~----------------------------~~~~d~iii-E~t 116 (184)
++..+|.+..+. + .......+.+++++ ..+|+++++ ||+
T Consensus 92 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt 171 (242)
T TIGR03411 92 LTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPV 171 (242)
T ss_pred CCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 555555433211 0 00011112222211 168999999 999
Q ss_pred CCCCChhHHHHh
Q psy7718 117 GLADPGPIAKVF 128 (184)
Q Consensus 117 g~~dp~~i~~~l 128 (184)
...||....++.
T Consensus 172 ~~LD~~~~~~l~ 183 (242)
T TIGR03411 172 AGMTDEETEKTA 183 (242)
T ss_pred cCCCHHHHHHHH
Confidence 999998766554
No 107
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.58 E-value=4.3e-15 Score=117.91 Aligned_cols=125 Identities=21% Similarity=0.194 Sum_probs=80.1
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc-------ccccceeEecCCCchhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG-------SAMEKSVSVGDNGNLYE 76 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~-------~~~~~~~~~~~~~~l~~ 76 (184)
+.++.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..-. .......+++|...++.
T Consensus 11 ~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 90 (240)
T PRK09493 11 FGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFP 90 (240)
T ss_pred ECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCC
Confidence 34467999999999999999999999999999999999998888888877653211 11122345666655544
Q ss_pred hhhhhcCcceec-c---cc-cchHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCCh
Q psy7718 77 EWLELKNGCLCC-S---VK-DNGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPG 122 (184)
Q Consensus 77 ~~~~l~~gci~~-~---~~-~~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~ 122 (184)
.++..+|..+.. . .. ......+.++++. ..+|+++++ ||+...||.
T Consensus 91 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~ 170 (240)
T PRK09493 91 HLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPE 170 (240)
T ss_pred CCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 444444432211 0 00 0011111111110 168999999 999999998
Q ss_pred hHHHHh
Q psy7718 123 PIAKVF 128 (184)
Q Consensus 123 ~i~~~l 128 (184)
...++.
T Consensus 171 ~~~~l~ 176 (240)
T PRK09493 171 LRHEVL 176 (240)
T ss_pred HHHHHH
Confidence 665543
No 108
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=3.8e-15 Score=118.39 Aligned_cols=122 Identities=15% Similarity=0.078 Sum_probs=79.4
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc-----ccccceeEecCCCchhhhhhhh
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG-----SAMEKSVSVGDNGNLYEEWLEL 81 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~l 81 (184)
+.+|+++||++.+|++++|+|+||||||||++.|.|..++.+|.|..++..-. .......+++|...++...+..
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 93 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVE 93 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHH
Confidence 67999999999999999999999999999999999998888888877543211 1112234566665555444445
Q ss_pred cCcceeccccc----c----hHHHHHH-------HHH-------------------HcCCCCEEEE-ccCCCCCChhHHH
Q psy7718 82 KNGCLCCSVKD----N----GVKAIEN-------LML-------------------KRGKFDYILL-ETTGLADPGPIAK 126 (184)
Q Consensus 82 ~~gci~~~~~~----~----~~~~l~~-------ll~-------------------~~~~~d~iii-E~tg~~dp~~i~~ 126 (184)
+|..+.+.+.+ . ....++. ... -..+|+++++ ||+...||.....
T Consensus 94 e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 173 (242)
T cd03295 94 ENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQ 173 (242)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHH
Confidence 55433221100 0 0011110 000 0268999999 9999999987655
Q ss_pred Hh
Q psy7718 127 VF 128 (184)
Q Consensus 127 ~l 128 (184)
++
T Consensus 174 l~ 175 (242)
T cd03295 174 LQ 175 (242)
T ss_pred HH
Confidence 43
No 109
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=5.1e-15 Score=113.89 Aligned_cols=121 Identities=16% Similarity=0.104 Sum_probs=82.7
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcC--CCCeEEEEecccCC-cccccceeEecCCCchhhhhhhhcC
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQ--HDKKIAVILNEFGE-GSAMEKSVSVGDNGNLYEEWLELKN 83 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~--~~~~~~vi~~~~~~-~~~~~~~~~~~~~~~l~~~~~~l~~ 83 (184)
+.+|+++||++++|++++|+|+||||||||++.|++.. .+.++.|..++..- ........+++|...++..++..+|
T Consensus 20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 99 (192)
T cd03232 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREA 99 (192)
T ss_pred eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHH
Confidence 57999999999999999999999999999999999964 36778877654321 1111223456666555555555565
Q ss_pred cceec---cccc--chHHHHHHHHHHcCCCCEEEE-ccCCCCCChhHHHHhh
Q psy7718 84 GCLCC---SVKD--NGVKAIENLMLKRGKFDYILL-ETTGLADPGPIAKVFW 129 (184)
Q Consensus 84 gci~~---~~~~--~~~~~l~~ll~~~~~~d~iii-E~tg~~dp~~i~~~l~ 129 (184)
.++.. .+.+ ...-.+.+.+ ..+|+++++ ||+...||....+++.
T Consensus 100 l~~~~~~~~LSgGe~qrv~la~al--~~~p~vlllDEP~~~LD~~~~~~l~~ 149 (192)
T cd03232 100 LRFSALLRGLSVEQRKRLTIGVEL--AAKPSILFLDEPTSGLDSQAAYNIVR 149 (192)
T ss_pred HHHHHHHhcCCHHHhHHHHHHHHH--hcCCcEEEEeCCCcCCCHHHHHHHHH
Confidence 54321 1211 1223445544 358999999 9999999987766544
No 110
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=3.2e-15 Score=126.83 Aligned_cols=124 Identities=15% Similarity=0.105 Sum_probs=84.5
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccC--Ccc---c----ccceeEecCCCch
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFG--EGS---A----MEKSVSVGDNGNL 74 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~--~~~---~----~~~~~~~~~~~~l 74 (184)
++...+|+++||++.+|++++|+|+||||||||++.|.+...|.+|.|..++.. ... . .....+++|...+
T Consensus 38 ~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l 117 (400)
T PRK10070 38 TGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL 117 (400)
T ss_pred cCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence 344458999999999999999999999999999999999988888888776432 111 0 1234567787777
Q ss_pred hhhhhhhcCcceeccccc----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCC
Q psy7718 75 YEEWLELKNGCLCCSVKD----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADP 121 (184)
Q Consensus 75 ~~~~~~l~~gci~~~~~~----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp 121 (184)
+..++..+|..+.....+ .....+.++++. ..+|+++++ ||+...||
T Consensus 118 ~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~ 197 (400)
T PRK10070 118 MPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDP 197 (400)
T ss_pred CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCH
Confidence 666666666554322111 111112222211 168999999 99999999
Q ss_pred hhHHHH
Q psy7718 122 GPIAKV 127 (184)
Q Consensus 122 ~~i~~~ 127 (184)
....++
T Consensus 198 ~~r~~l 203 (400)
T PRK10070 198 LIRTEM 203 (400)
T ss_pred HHHHHH
Confidence 865443
No 111
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.58 E-value=7.6e-15 Score=109.79 Aligned_cols=143 Identities=20% Similarity=0.178 Sum_probs=99.6
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEe--cccC---Ccc---cc-cceeEecCCCchh
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVIL--NEFG---EGS---AM-EKSVSVGDNGNLY 75 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~--~~~~---~~~---~~-~~~~~~~~~~~l~ 75 (184)
..-.+|++|+|.+++|+.++|+|++|||||||+-.+.|...+.++.|.. +.+. +.. +. +....++|.+.+.
T Consensus 21 ~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Li 100 (228)
T COG4181 21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLI 100 (228)
T ss_pred cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeecc
Confidence 3456999999999999999999999999999999999988887776655 2222 221 11 2344789999999
Q ss_pred hhhhhhcCcceecccccch----HHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCCh
Q psy7718 76 EEWLELKNGCLCCSVKDNG----VKAIENLMLK----------------------------RGKFDYILL-ETTGLADPG 122 (184)
Q Consensus 76 ~~~~~l~~gci~~~~~~~~----~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~ 122 (184)
+.++.++|..+-|-++++. ...-.+++.+ ...|++++- ||||-.|-.
T Consensus 101 p~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~ 180 (228)
T COG4181 101 PNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRA 180 (228)
T ss_pred ccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchh
Confidence 9999999998888776522 2222233332 157898888 999999965
Q ss_pred ---hHHHHhhhccccCCceEeCcEEEEEcCC
Q psy7718 123 ---PIAKVFWLDKELGSDIYLDGIVTVVDCK 150 (184)
Q Consensus 123 ---~i~~~l~~~~~~~~~~~l~~vi~vvDa~ 150 (184)
.++.++. .+.+..-..-|++.+|+.
T Consensus 181 Tg~~iaDLlF---~lnre~G~TlVlVTHD~~ 208 (228)
T COG4181 181 TGDKIADLLF---ALNRERGTTLVLVTHDPQ 208 (228)
T ss_pred HHHHHHHHHH---HHhhhcCceEEEEeCCHH
Confidence 3444432 233333333366677753
No 112
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.58 E-value=3.6e-15 Score=120.42 Aligned_cols=125 Identities=17% Similarity=0.111 Sum_probs=80.7
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccC--Ccc------cccceeEecCCCchh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFG--EGS------AMEKSVSVGDNGNLY 75 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~--~~~------~~~~~~~~~~~~~l~ 75 (184)
+.++.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++.. ... ......+++|...++
T Consensus 17 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 96 (269)
T PRK11831 17 RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALF 96 (269)
T ss_pred ECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccC
Confidence 345679999999999999999999999999999999999988888888775421 100 112234566766555
Q ss_pred hhhhhhcCcceeccc----ccc-hHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCC
Q psy7718 76 EEWLELKNGCLCCSV----KDN-GVKAIENLMLK----------------------------RGKFDYILL-ETTGLADP 121 (184)
Q Consensus 76 ~~~~~l~~gci~~~~----~~~-~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp 121 (184)
..++..+|..+.... ... ....+.+++.. ..+|+++++ ||+...||
T Consensus 97 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~ 176 (269)
T PRK11831 97 TDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDP 176 (269)
T ss_pred CCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCH
Confidence 544445544321100 000 00111111110 258999999 99999999
Q ss_pred hhHHHHh
Q psy7718 122 GPIAKVF 128 (184)
Q Consensus 122 ~~i~~~l 128 (184)
....+++
T Consensus 177 ~~~~~l~ 183 (269)
T PRK11831 177 ITMGVLV 183 (269)
T ss_pred HHHHHHH
Confidence 8766443
No 113
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=5.6e-15 Score=118.18 Aligned_cols=82 Identities=18% Similarity=0.108 Sum_probs=59.6
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc--c---ccc-ceeEecCCCchhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG--S---AME-KSVSVGDNGNLYEE 77 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~--~---~~~-~~~~~~~~~~l~~~ 77 (184)
+.++.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..-. . ... ...+++|...++..
T Consensus 15 ~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (255)
T PRK11300 15 FGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFRE 94 (255)
T ss_pred ECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCC
Confidence 34567999999999999999999999999999999999998888888877653211 1 011 12345676666555
Q ss_pred hhhhcCcc
Q psy7718 78 WLELKNGC 85 (184)
Q Consensus 78 ~~~l~~gc 85 (184)
++..+|..
T Consensus 95 ~tv~enl~ 102 (255)
T PRK11300 95 MTVIENLL 102 (255)
T ss_pred CcHHHHHH
Confidence 55555443
No 114
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.58 E-value=4.1e-15 Score=125.40 Aligned_cols=124 Identities=13% Similarity=0.085 Sum_probs=88.2
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEeccc------CCc---cc---c-cceeEecC
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEF------GEG---SA---M-EKSVSVGD 70 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~------~~~---~~---~-~~~~~~~~ 70 (184)
++...+|+++||++++|++++|+|+||||||||+++|.+...+.+|.|..++. ... .. . .....++|
T Consensus 34 ~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ 113 (382)
T TIGR03415 34 TGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQ 113 (382)
T ss_pred hCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEEC
Confidence 45567899999999999999999999999999999999998888898888652 111 00 0 23457788
Q ss_pred CCchhhhhhhhcCcceeccccc----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCC
Q psy7718 71 NGNLYEEWLELKNGCLCCSVKD----NGVKAIENLMLK----------------------------RGKFDYILL-ETTG 117 (184)
Q Consensus 71 ~~~l~~~~~~l~~gci~~~~~~----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg 117 (184)
...+++..+..+|..+.....+ .......+++++ ..+|+++++ ||+.
T Consensus 114 ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts 193 (382)
T TIGR03415 114 KFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFS 193 (382)
T ss_pred CCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 8888877777777665432211 111122222221 168999999 9999
Q ss_pred CCCChhHHHH
Q psy7718 118 LADPGPIAKV 127 (184)
Q Consensus 118 ~~dp~~i~~~ 127 (184)
..||....++
T Consensus 194 ~LD~~~r~~l 203 (382)
T TIGR03415 194 ALDPLIRTQL 203 (382)
T ss_pred cCCHHHHHHH
Confidence 9999865554
No 115
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.57 E-value=6.5e-15 Score=118.27 Aligned_cols=82 Identities=23% Similarity=0.148 Sum_probs=58.9
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc-----ccccceeEecCCCchhhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG-----SAMEKSVSVGDNGNLYEEW 78 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~l~~~~ 78 (184)
+.++.+|+++||++++|++++|+|+||||||||++.|+|..++.+|.|..++..-. .......+++|...++...
T Consensus 12 ~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (258)
T PRK13548 12 LGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPF 91 (258)
T ss_pred eCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCC
Confidence 44567999999999999999999999999999999999998888888877543211 1112233566665554444
Q ss_pred hhhcCcc
Q psy7718 79 LELKNGC 85 (184)
Q Consensus 79 ~~l~~gc 85 (184)
+..+|.+
T Consensus 92 tv~e~l~ 98 (258)
T PRK13548 92 TVEEVVA 98 (258)
T ss_pred CHHHHHH
Confidence 4455543
No 116
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.57 E-value=7.9e-15 Score=116.89 Aligned_cols=122 Identities=18% Similarity=0.114 Sum_probs=79.9
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCC-----eEEEEecccCCc-------ccccceeEecCC
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDK-----KIAVILNEFGEG-------SAMEKSVSVGDN 71 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~-----~~~vi~~~~~~~-------~~~~~~~~~~~~ 71 (184)
+.+..+++++||++.+|++++|+|+||||||||++.|+|..+|. +|.|..++..-. .......+++|.
T Consensus 11 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~ 90 (247)
T TIGR00972 11 YGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQK 90 (247)
T ss_pred ECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecC
Confidence 34467999999999999999999999999999999999988766 788877543211 111223356666
Q ss_pred CchhhhhhhhcCcceeccccc-----chHH----------------------------------HHHHHHHHcCCCCEEE
Q psy7718 72 GNLYEEWLELKNGCLCCSVKD-----NGVK----------------------------------AIENLMLKRGKFDYIL 112 (184)
Q Consensus 72 ~~l~~~~~~l~~gci~~~~~~-----~~~~----------------------------------~l~~ll~~~~~~d~ii 112 (184)
..++. .+..+|.++.+...+ .... .|.+.+ ..+|++++
T Consensus 91 ~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral--~~~p~lll 167 (247)
T TIGR00972 91 PNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARAL--AVEPEVLL 167 (247)
T ss_pred cccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHH--hcCCCEEE
Confidence 55544 444555443321110 0000 111111 26899999
Q ss_pred E-ccCCCCCChhHHHHh
Q psy7718 113 L-ETTGLADPGPIAKVF 128 (184)
Q Consensus 113 i-E~tg~~dp~~i~~~l 128 (184)
+ ||+...||.....++
T Consensus 168 lDEPt~~LD~~~~~~l~ 184 (247)
T TIGR00972 168 LDEPTSALDPIATGKIE 184 (247)
T ss_pred EeCCcccCCHHHHHHHH
Confidence 9 999999998765544
No 117
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.57 E-value=6.5e-15 Score=128.47 Aligned_cols=125 Identities=14% Similarity=0.070 Sum_probs=83.0
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccC--Ccc----cccceeEecCCCchhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFG--EGS----AMEKSVSVGDNGNLYEE 77 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~--~~~----~~~~~~~~~~~~~l~~~ 77 (184)
+.++.+|+++||++.+|++++|+|+||||||||++.|+|..+|.+|.|..++.. ... ......+++|...++..
T Consensus 14 ~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK10762 14 FPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQ 93 (501)
T ss_pred eCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCC
Confidence 445679999999999999999999999999999999999988888888775422 110 01223456776555555
Q ss_pred hhhhcCcceeccc-------c-cchHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCC
Q psy7718 78 WLELKNGCLCCSV-------K-DNGVKAIENLMLK----------------------------RGKFDYILL-ETTGLAD 120 (184)
Q Consensus 78 ~~~l~~gci~~~~-------~-~~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~d 120 (184)
++..+|..+.... . ......+.+++++ ..+|+++++ |||...|
T Consensus 94 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD 173 (501)
T PRK10762 94 LTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALT 173 (501)
T ss_pred CcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCC
Confidence 5555554332110 0 0001112222211 268999999 9999999
Q ss_pred ChhHHHHh
Q psy7718 121 PGPIAKVF 128 (184)
Q Consensus 121 p~~i~~~l 128 (184)
|....++.
T Consensus 174 ~~~~~~l~ 181 (501)
T PRK10762 174 DTETESLF 181 (501)
T ss_pred HHHHHHHH
Confidence 98665543
No 118
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=8.9e-15 Score=115.87 Aligned_cols=125 Identities=17% Similarity=0.126 Sum_probs=81.4
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc--c----cccceeEecCCCchhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG--S----AMEKSVSVGDNGNLYEE 77 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~--~----~~~~~~~~~~~~~l~~~ 77 (184)
+.++.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..-. . ......+++|...++..
T Consensus 15 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (237)
T PRK11614 15 YGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSR 94 (237)
T ss_pred eCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCC
Confidence 34567999999999999999999999999999999999998888888877653211 1 11223456666555554
Q ss_pred hhhhcCcceecccc--cch----HHHHHHH--HH-----------------------HcCCCCEEEE-ccCCCCCChhHH
Q psy7718 78 WLELKNGCLCCSVK--DNG----VKAIENL--ML-----------------------KRGKFDYILL-ETTGLADPGPIA 125 (184)
Q Consensus 78 ~~~l~~gci~~~~~--~~~----~~~l~~l--l~-----------------------~~~~~d~iii-E~tg~~dp~~i~ 125 (184)
.+..+|........ ... ...+..+ +. -..+|+++++ ||+...||....
T Consensus 95 ~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~ 174 (237)
T PRK11614 95 MTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQ 174 (237)
T ss_pred CcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHH
Confidence 44555544321100 000 0011110 00 0158999999 999999998765
Q ss_pred HHh
Q psy7718 126 KVF 128 (184)
Q Consensus 126 ~~l 128 (184)
.+.
T Consensus 175 ~l~ 177 (237)
T PRK11614 175 QIF 177 (237)
T ss_pred HHH
Confidence 543
No 119
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=6.1e-15 Score=119.75 Aligned_cols=122 Identities=16% Similarity=0.050 Sum_probs=79.9
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc-----ccccceeEecCCCc-hhhhhhh
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG-----SAMEKSVSVGDNGN-LYEEWLE 80 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~-l~~~~~~ 80 (184)
+.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..-. .......+++|.+. .+...+.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv 99 (279)
T PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATV 99 (279)
T ss_pred CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccH
Confidence 45999999999999999999999999999999999998888888887653211 11123345667642 3333444
Q ss_pred hcCcceeccccc----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHHHH
Q psy7718 81 LKNGCLCCSVKD----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIAKV 127 (184)
Q Consensus 81 l~~gci~~~~~~----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~~~ 127 (184)
.+|..+.....+ .....+.++++. ..+|+++++ ||+...||....++
T Consensus 100 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l 179 (279)
T PRK13650 100 EDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLEL 179 (279)
T ss_pred HHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH
Confidence 555443211100 011112222211 168999999 99999999866554
Q ss_pred h
Q psy7718 128 F 128 (184)
Q Consensus 128 l 128 (184)
+
T Consensus 180 ~ 180 (279)
T PRK13650 180 I 180 (279)
T ss_pred H
Confidence 3
No 120
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.57 E-value=4.7e-15 Score=119.48 Aligned_cols=52 Identities=25% Similarity=0.215 Sum_probs=46.5
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
|.++.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++
T Consensus 17 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g 68 (265)
T PRK10253 17 YGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDG 68 (265)
T ss_pred ECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECC
Confidence 3456799999999999999999999999999999999999888888887654
No 121
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=7.4e-15 Score=116.66 Aligned_cols=125 Identities=17% Similarity=0.137 Sum_probs=81.3
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCC-------c----ccccceeEecCCC
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGE-------G----SAMEKSVSVGDNG 72 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~-------~----~~~~~~~~~~~~~ 72 (184)
+.++.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..- . .......+++|..
T Consensus 12 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~ 91 (242)
T PRK11124 12 YGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQY 91 (242)
T ss_pred ECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCc
Confidence 3456799999999999999999999999999999999999888888887765321 0 0112234566766
Q ss_pred chhhhhhhhcCccee-cc---cc-cchHHHHHHHHHH----------------------------cCCCCEEEE-ccCCC
Q psy7718 73 NLYEEWLELKNGCLC-CS---VK-DNGVKAIENLMLK----------------------------RGKFDYILL-ETTGL 118 (184)
Q Consensus 73 ~l~~~~~~l~~gci~-~~---~~-~~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~ 118 (184)
.++..++..+|.... +. .. ......+.+++.. ..+|+++++ ||+..
T Consensus 92 ~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~ 171 (242)
T PRK11124 92 NLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAA 171 (242)
T ss_pred cccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCc
Confidence 555544555554311 10 00 0000111111110 258999999 99999
Q ss_pred CCChhHHHHh
Q psy7718 119 ADPGPIAKVF 128 (184)
Q Consensus 119 ~dp~~i~~~l 128 (184)
.||.....+.
T Consensus 172 LD~~~~~~l~ 181 (242)
T PRK11124 172 LDPEITAQIV 181 (242)
T ss_pred CCHHHHHHHH
Confidence 9998765543
No 122
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.57 E-value=8.5e-15 Score=116.79 Aligned_cols=52 Identities=27% Similarity=0.282 Sum_probs=46.2
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
+.++.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++
T Consensus 13 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 64 (250)
T PRK11264 13 FHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGD 64 (250)
T ss_pred ECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECC
Confidence 3456799999999999999999999999999999999999888888876653
No 123
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.57 E-value=8.2e-15 Score=116.22 Aligned_cols=125 Identities=20% Similarity=0.119 Sum_probs=82.6
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc--cc-ccceeEecCCCchhhhhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG--SA-MEKSVSVGDNGNLYEEWLE 80 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~--~~-~~~~~~~~~~~~l~~~~~~ 80 (184)
|.++.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++.... .. .....+++|...++...+.
T Consensus 10 ~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 89 (237)
T TIGR00968 10 FGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTV 89 (237)
T ss_pred ECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcH
Confidence 34567999999999999999999999999999999999988888888877543211 11 1223456666555554445
Q ss_pred hcCcceeccccc----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHHHH
Q psy7718 81 LKNGCLCCSVKD----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIAKV 127 (184)
Q Consensus 81 l~~gci~~~~~~----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~~~ 127 (184)
.+|....+..++ .....+.+++.+ ..+|+++++ ||+...|+....++
T Consensus 90 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~ 169 (237)
T TIGR00968 90 RDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKEL 169 (237)
T ss_pred HHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 555543332110 011112222211 157999999 99999999876554
Q ss_pred h
Q psy7718 128 F 128 (184)
Q Consensus 128 l 128 (184)
.
T Consensus 170 ~ 170 (237)
T TIGR00968 170 R 170 (237)
T ss_pred H
Confidence 3
No 124
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.57 E-value=1.2e-14 Score=111.96 Aligned_cols=136 Identities=19% Similarity=0.151 Sum_probs=84.9
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcC---CC--CeEEEEecccC--Cc-----ccccceeEecCC
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQ---HD--KKIAVILNEFG--EG-----SAMEKSVSVGDN 71 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~---~~--~~~~vi~~~~~--~~-----~~~~~~~~~~~~ 71 (184)
|+++.+|++||+.+++..|++++||+|||||||||.+.+.. .+ ..|.|..++.. +. ...++..-++|.
T Consensus 17 Yg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQk 96 (253)
T COG1117 17 YGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQK 96 (253)
T ss_pred ECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccC
Confidence 67789999999999999999999999999999999998753 22 23555553321 11 122333457777
Q ss_pred CchhhhhhhhcCcceecccccchHHHHHHHHHH------------------------------------cCCCCEEEE-c
Q psy7718 72 GNLYEEWLELKNGCLCCSVKDNGVKAIENLMLK------------------------------------RGKFDYILL-E 114 (184)
Q Consensus 72 ~~l~~~~~~l~~gci~~~~~~~~~~~l~~ll~~------------------------------------~~~~d~iii-E 114 (184)
+.-++ ++-++|..+--.+.+.....|.++.++ .-+|+++++ |
T Consensus 97 PnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDE 175 (253)
T COG1117 97 PNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDE 175 (253)
T ss_pred CCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecC
Confidence 66555 555555443322211111111111110 157999999 9
Q ss_pred cCCCCCChhHHHHhhhccccCCceEe
Q psy7718 115 TTGLADPGPIAKVFWLDKELGSDIYL 140 (184)
Q Consensus 115 ~tg~~dp~~i~~~l~~~~~~~~~~~l 140 (184)
|+...||-+-.++-....+++..+.+
T Consensus 176 PtSALDPIsT~kIEeLi~eLk~~yTI 201 (253)
T COG1117 176 PTSALDPISTLKIEELITELKKKYTI 201 (253)
T ss_pred cccccCchhHHHHHHHHHHHHhccEE
Confidence 99999998655544334455655553
No 125
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=6.3e-15 Score=118.75 Aligned_cols=51 Identities=22% Similarity=0.266 Sum_probs=45.9
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
.++.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++
T Consensus 22 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g 72 (265)
T PRK10575 22 PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDA 72 (265)
T ss_pred CCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECC
Confidence 345799999999999999999999999999999999999888788877654
No 126
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.56 E-value=1.7e-14 Score=106.31 Aligned_cols=100 Identities=23% Similarity=0.186 Sum_probs=73.9
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcccccceeEecCCCchhhhhhhhcCc
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLELKNG 84 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g 84 (184)
.+..+++++||++++|++++|+|+||||||||++.|.+..++.+|.|..++.. ...+++| ++.|
T Consensus 11 ~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~------~i~~~~~----------lS~G 74 (144)
T cd03221 11 GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTV------KIGYFEQ----------LSGG 74 (144)
T ss_pred CCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeE------EEEEEcc----------CCHH
Confidence 34579999999999999999999999999999999999988888888765521 1112332 3322
Q ss_pred ceecccccchHHHHHHHHHHcCCCCEEEE-ccCCCCCChhHHHHhh
Q psy7718 85 CLCCSVKDNGVKAIENLMLKRGKFDYILL-ETTGLADPGPIAKVFW 129 (184)
Q Consensus 85 ci~~~~~~~~~~~l~~ll~~~~~~d~iii-E~tg~~dp~~i~~~l~ 129 (184)
....-.|.+.+ ..+|+++++ ||+...|+.....+..
T Consensus 75 -------~~~rv~laral--~~~p~illlDEP~~~LD~~~~~~l~~ 111 (144)
T cd03221 75 -------EKMRLALAKLL--LENPNLLLLDEPTNHLDLESIEALEE 111 (144)
T ss_pred -------HHHHHHHHHHH--hcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 11223455554 358999999 9999999987766543
No 127
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.56 E-value=9.7e-15 Score=127.61 Aligned_cols=125 Identities=17% Similarity=0.120 Sum_probs=83.5
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccC--Ccc---cc-cceeEecCCCchhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFG--EGS---AM-EKSVSVGDNGNLYEE 77 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~--~~~---~~-~~~~~~~~~~~l~~~ 77 (184)
|+++.+|+++||++.+|++++|+|+||||||||++.|+|...+.+|.|..++.. ... .. ....+++|...++..
T Consensus 15 ~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 94 (510)
T PRK09700 15 FGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDE 94 (510)
T ss_pred cCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCC
Confidence 455679999999999999999999999999999999999988888888775421 111 01 123456776555555
Q ss_pred hhhhcCcceecc----ccc-------chHHHHHHHHHH----------------------------cCCCCEEEE-ccCC
Q psy7718 78 WLELKNGCLCCS----VKD-------NGVKAIENLMLK----------------------------RGKFDYILL-ETTG 117 (184)
Q Consensus 78 ~~~l~~gci~~~----~~~-------~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg 117 (184)
++..+|..+.+. ..+ .....+.++++. ..+|+++++ |||.
T Consensus 95 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~ 174 (510)
T PRK09700 95 LTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTS 174 (510)
T ss_pred CcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 555555543221 000 011122222221 268999999 9999
Q ss_pred CCCChhHHHHh
Q psy7718 118 LADPGPIAKVF 128 (184)
Q Consensus 118 ~~dp~~i~~~l 128 (184)
..||....+++
T Consensus 175 ~LD~~~~~~l~ 185 (510)
T PRK09700 175 SLTNKEVDYLF 185 (510)
T ss_pred CCCHHHHHHHH
Confidence 99998766544
No 128
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=9e-15 Score=118.79 Aligned_cols=121 Identities=16% Similarity=0.079 Sum_probs=80.3
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc-----ccccceeEecCCCc-hhhhhhh
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG-----SAMEKSVSVGDNGN-LYEEWLE 80 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~-l~~~~~~ 80 (184)
+.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..-. .......+++|... ++...+.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv 99 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATV 99 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccH
Confidence 56999999999999999999999999999999999998888888887653211 11123445666642 3333445
Q ss_pred hcCcceeccccc----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHHHH
Q psy7718 81 LKNGCLCCSVKD----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIAKV 127 (184)
Q Consensus 81 l~~gci~~~~~~----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~~~ 127 (184)
.+|.+......+ .....+.+++.. ..+|+++++ ||+...||....++
T Consensus 100 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l 179 (279)
T PRK13635 100 QDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREV 179 (279)
T ss_pred HHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 555543221110 001112222111 168999999 99999999865544
No 129
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.56 E-value=9e-15 Score=114.15 Aligned_cols=123 Identities=21% Similarity=0.121 Sum_probs=78.4
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc---------ccccceeEecCCCch
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG---------SAMEKSVSVGDNGNL 74 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~---------~~~~~~~~~~~~~~l 74 (184)
|+++.+ ++||++.+ ++++|+|+||||||||++.|+|..++.+|.|..++..-. .......+++|...+
T Consensus 10 ~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 86 (214)
T cd03297 10 LPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYAL 86 (214)
T ss_pred cCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCcc
Confidence 444545 99999999 999999999999999999999998888888776542210 011233456676655
Q ss_pred hhhhhhhcCcceecccc--cchHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChh
Q psy7718 75 YEEWLELKNGCLCCSVK--DNGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGP 123 (184)
Q Consensus 75 ~~~~~~l~~gci~~~~~--~~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~ 123 (184)
+...+..+|..+.+... ......+.+++++ ..+|+++++ ||+...||..
T Consensus 87 ~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~ 166 (214)
T cd03297 87 FPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRAL 166 (214)
T ss_pred CCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 54444444443222110 0001111111111 268999999 9999999987
Q ss_pred HHHHhh
Q psy7718 124 IAKVFW 129 (184)
Q Consensus 124 i~~~l~ 129 (184)
..++..
T Consensus 167 ~~~l~~ 172 (214)
T cd03297 167 RLQLLP 172 (214)
T ss_pred HHHHHH
Confidence 666543
No 130
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=1.1e-14 Score=118.02 Aligned_cols=51 Identities=20% Similarity=0.083 Sum_probs=46.4
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEeccc
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEF 56 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~ 56 (184)
+..+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++.
T Consensus 17 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 67 (274)
T PRK13647 17 GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGR 67 (274)
T ss_pred CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCE
Confidence 357999999999999999999999999999999999998888888877653
No 131
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.56 E-value=2.1e-14 Score=111.74 Aligned_cols=118 Identities=24% Similarity=0.201 Sum_probs=80.0
Q ss_pred cccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccC--Ccc-cccceeEecCCCchhhhhhhhcCcceec
Q psy7718 12 LVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFG--EGS-AMEKSVSVGDNGNLYEEWLELKNGCLCC 88 (184)
Q Consensus 12 ~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~--~~~-~~~~~~~~~~~~~l~~~~~~l~~gci~~ 88 (184)
++||++.+|++++|+|+||||||||++.|++..++.+|.|..++.. ... ......+++|+..+++..+..+|.++..
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~ 95 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGL 95 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccc
Confidence 9999999999999999999999999999999988888888775432 111 1123446677766666666666665432
Q ss_pred ccc----cchHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHHHHhh
Q psy7718 89 SVK----DNGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIAKVFW 129 (184)
Q Consensus 89 ~~~----~~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~~~l~ 129 (184)
... ......+.++++. ..+|+++++ ||+...||....++..
T Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~ 169 (211)
T cd03298 96 SPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLD 169 (211)
T ss_pred ccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 210 0111122222211 168999999 9999999987666543
No 132
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.56 E-value=9.4e-15 Score=115.50 Aligned_cols=123 Identities=18% Similarity=0.112 Sum_probs=80.0
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc---ccccceeEecCCCchhhhhhhh
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG---SAMEKSVSVGDNGNLYEEWLEL 81 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~---~~~~~~~~~~~~~~l~~~~~~l 81 (184)
.++.+++++||++.+|++++|+|+||||||||++.|++..++..|.|..++..-. .......+++|+..++..++..
T Consensus 11 ~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (232)
T cd03300 11 GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVF 90 (232)
T ss_pred CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHH
Confidence 4467999999999999999999999999999999999998888888777542111 1112233556665555444444
Q ss_pred cCcceeccccc----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHHHH
Q psy7718 82 KNGCLCCSVKD----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIAKV 127 (184)
Q Consensus 82 ~~gci~~~~~~----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~~~ 127 (184)
+|..+.+...+ .....+.++++. ..+|+++++ ||+...|+....++
T Consensus 91 ~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l 169 (232)
T cd03300 91 ENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDM 169 (232)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 44433221110 001111111110 268999999 99999999866554
No 133
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.56 E-value=1.2e-14 Score=116.93 Aligned_cols=82 Identities=16% Similarity=0.050 Sum_probs=58.2
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCC---eEEEEecccCCcc----------cccceeEecC
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDK---KIAVILNEFGEGS----------AMEKSVSVGD 70 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~---~~~vi~~~~~~~~----------~~~~~~~~~~ 70 (184)
+.++.+|+++||++.+|++++|+|+||||||||++.|+|..++. .|.|..++..-.. ......+++|
T Consensus 14 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q 93 (262)
T PRK09984 14 FNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQ 93 (262)
T ss_pred eCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEcc
Confidence 34567999999999999999999999999999999999987653 4777765532110 0112346677
Q ss_pred CCchhhhhhhhcCcc
Q psy7718 71 NGNLYEEWLELKNGC 85 (184)
Q Consensus 71 ~~~l~~~~~~l~~gc 85 (184)
...++..++..+|..
T Consensus 94 ~~~~~~~~tv~e~l~ 108 (262)
T PRK09984 94 QFNLVNRLSVLENVL 108 (262)
T ss_pred ccccccCCcHHHHHH
Confidence 665555555555543
No 134
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.55 E-value=1.9e-14 Score=111.47 Aligned_cols=118 Identities=19% Similarity=0.302 Sum_probs=76.3
Q ss_pred EEEEEecCCChHHHHHHHHHhcCCC-CeEEEEecccCCccc---ccceeEecCCCchhhhhhhhcCcceecccccchH--
Q psy7718 22 VTIITGYLGAGKTTLLNYILTEQHD-KKIAVILNEFGEGSA---MEKSVSVGDNGNLYEEWLELKNGCLCCSVKDNGV-- 95 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~~~~-~~~~vi~~~~~~~~~---~~~~~~~~~~~~l~~~~~~l~~gci~~~~~~~~~-- 95 (184)
.++|+||+|||||||++++++...+ .++.++.+++..... ..+...+.++. .+....|||.||..+.+..
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~ 78 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQLAVITNDIYTQEDAEFLVKNSALPPER----ILGVETGGCPHTAIREDASMN 78 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEeCCcCChhHHHHHHHcCCCCcCc----eehhhcCCCccceeccCHHHH
Confidence 6899999999999999999987433 456777777765211 11111122221 1222379999999988774
Q ss_pred -HHHHHHHHHcCCCCEEEEccCCCCCChhHHHHhhhccccCCceEeCcEEEEEcCCCccc
Q psy7718 96 -KAIENLMLKRGKFDYILLETTGLADPGPIAKVFWLDKELGSDIYLDGIVTVVDCKHTID 154 (184)
Q Consensus 96 -~~l~~ll~~~~~~d~iiiE~tg~~dp~~i~~~l~~~~~~~~~~~l~~vi~vvDa~~~~~ 154 (184)
.+|.+++.+..++|+++||++|.. +...+ .+.+ .+.+|+|+|+..+..
T Consensus 79 ~~~L~~l~~~~~~~D~iiIEt~G~~----l~~~~--~~~l-----~~~~i~vvD~~~~~~ 127 (199)
T TIGR00101 79 LEAVAEMEARFPPLEMVFIESGGDN----LSATF--SPEL-----ADLTIFVIDVAAGDK 127 (199)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCC----ccccc--chhh-----hCcEEEEEEcchhhh
Confidence 455666544457999999999952 22222 1211 356899999986554
No 135
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.55 E-value=1.3e-14 Score=114.04 Aligned_cols=48 Identities=23% Similarity=0.225 Sum_probs=44.6
Q ss_pred CCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 8 EVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 8 ~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 66 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDG 66 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 799999999999999999999999999999999999888888887754
No 136
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.55 E-value=2.6e-14 Score=114.06 Aligned_cols=122 Identities=22% Similarity=0.127 Sum_probs=79.6
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCC-----CCeEEEEecccCCc-----ccccceeEecCCCch
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQH-----DKKIAVILNEFGEG-----SAMEKSVSVGDNGNL 74 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~-----~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~l 74 (184)
.++.+|+++||++.+|++++|+|+||||||||++.|+|..+ +.+|.|..++..-. .......+++|...+
T Consensus 14 ~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~ 93 (250)
T PRK14247 14 GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNP 93 (250)
T ss_pred CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCcc
Confidence 44679999999999999999999999999999999999865 35788777543211 111223356666554
Q ss_pred hhhhhhhcCcceecccc------cchHH----------------------------------HHHHHHHHcCCCCEEEE-
Q psy7718 75 YEEWLELKNGCLCCSVK------DNGVK----------------------------------AIENLMLKRGKFDYILL- 113 (184)
Q Consensus 75 ~~~~~~l~~gci~~~~~------~~~~~----------------------------------~l~~ll~~~~~~d~iii- 113 (184)
+...+..+|.++.+... ..... .+.+.+ ..+|+++++
T Consensus 94 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral--~~~p~lllLD 171 (250)
T PRK14247 94 IPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARAL--AFQPEVLLAD 171 (250)
T ss_pred CCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHH--hcCCCEEEEc
Confidence 44455555544332110 00000 111111 258999999
Q ss_pred ccCCCCCChhHHHHh
Q psy7718 114 ETTGLADPGPIAKVF 128 (184)
Q Consensus 114 E~tg~~dp~~i~~~l 128 (184)
||+...||....++.
T Consensus 172 EP~~~LD~~~~~~l~ 186 (250)
T PRK14247 172 EPTANLDPENTAKIE 186 (250)
T ss_pred CCCccCCHHHHHHHH
Confidence 999999998766544
No 137
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.55 E-value=1.1e-14 Score=116.63 Aligned_cols=52 Identities=21% Similarity=0.248 Sum_probs=46.3
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
+.++.+|+++||++++|++++|+|+||||||||++.|+|..++.+|.|..++
T Consensus 12 ~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g 63 (255)
T PRK11231 12 YGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGD 63 (255)
T ss_pred ECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECC
Confidence 3456799999999999999999999999999999999998888788777654
No 138
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.55 E-value=1.9e-14 Score=115.09 Aligned_cols=82 Identities=18% Similarity=-0.001 Sum_probs=57.5
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCC-----CeEEEEecccCCc-------ccccceeEecCC
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHD-----KKIAVILNEFGEG-------SAMEKSVSVGDN 71 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~-----~~~~vi~~~~~~~-------~~~~~~~~~~~~ 71 (184)
+.++.+|+++||++.+|++++|+|+||||||||++.|+|..++ .+|.|..++..-. .......+++|.
T Consensus 14 ~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~ 93 (253)
T PRK14267 14 YGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQY 93 (253)
T ss_pred eCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecC
Confidence 3456799999999999999999999999999999999998765 3777776542110 111223456666
Q ss_pred CchhhhhhhhcCcc
Q psy7718 72 GNLYEEWLELKNGC 85 (184)
Q Consensus 72 ~~l~~~~~~l~~gc 85 (184)
..++...+..+|..
T Consensus 94 ~~~~~~~tv~enl~ 107 (253)
T PRK14267 94 PNPFPHLTIYDNVA 107 (253)
T ss_pred CccCCCCcHHHHHH
Confidence 55554444444443
No 139
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.55 E-value=1.2e-14 Score=113.90 Aligned_cols=49 Identities=29% Similarity=0.289 Sum_probs=45.4
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
+.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g 66 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLG 66 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC
Confidence 5699999999999999999999999999999999999888888887754
No 140
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.55 E-value=6.3e-15 Score=115.56 Aligned_cols=51 Identities=24% Similarity=0.118 Sum_probs=47.2
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
...++|+||||++.+|+.++|+|.||||||||+|.|.|..+|++|.|..++
T Consensus 38 ~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G 88 (249)
T COG1134 38 AEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG 88 (249)
T ss_pred ceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcc
Confidence 456799999999999999999999999999999999999999999888754
No 141
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.54 E-value=1.8e-14 Score=125.84 Aligned_cols=125 Identities=17% Similarity=0.138 Sum_probs=82.4
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCC--CeEEEEecccC--Cccc----ccceeEecCCCchh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHD--KKIAVILNEFG--EGSA----MEKSVSVGDNGNLY 75 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~--~~~~vi~~~~~--~~~~----~~~~~~~~~~~~l~ 75 (184)
|.++.+|++|||++.+|++++|+|+||||||||++.|+|..++ .+|.|..++.. .... .....+++|+..++
T Consensus 15 ~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 94 (506)
T PRK13549 15 FGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALV 94 (506)
T ss_pred eCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccC
Confidence 4456799999999999999999999999999999999998764 68888775432 1111 12234667765555
Q ss_pred hhhhhhcCcceecccc-----c--chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCC
Q psy7718 76 EEWLELKNGCLCCSVK-----D--NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLA 119 (184)
Q Consensus 76 ~~~~~l~~gci~~~~~-----~--~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~ 119 (184)
..++..+|..+.+... . .....+.+++++ ..+|+++++ |||...
T Consensus 95 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~L 174 (506)
T PRK13549 95 KELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASL 174 (506)
T ss_pred CCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 5555555544322110 0 011122222221 268999999 999999
Q ss_pred CChhHHHHh
Q psy7718 120 DPGPIAKVF 128 (184)
Q Consensus 120 dp~~i~~~l 128 (184)
||....+++
T Consensus 175 D~~~~~~l~ 183 (506)
T PRK13549 175 TESETAVLL 183 (506)
T ss_pred CHHHHHHHH
Confidence 998765544
No 142
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.54 E-value=1.6e-14 Score=117.70 Aligned_cols=50 Identities=20% Similarity=0.233 Sum_probs=46.1
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEeccc
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEF 56 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~ 56 (184)
+.+|++|||++.+|++++|+|+||||||||++.|+|..++.+|.|..++.
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~ 69 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGV 69 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCE
Confidence 47999999999999999999999999999999999998888888877653
No 143
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.54 E-value=2.5e-14 Score=112.61 Aligned_cols=123 Identities=18% Similarity=0.119 Sum_probs=80.3
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCC---CCeEEEEecccCC--cccccceeEecCCCchhhhhhhh
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQH---DKKIAVILNEFGE--GSAMEKSVSVGDNGNLYEEWLEL 81 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~---~~~~~vi~~~~~~--~~~~~~~~~~~~~~~l~~~~~~l 81 (184)
+.+++++||++.+|++++|+|+||||||||++.|++..+ +.+|.|..++..- ........+++|+..++..++..
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 99 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVR 99 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHH
Confidence 689999999999999999999999999999999999877 7788877754321 11122233566665555554555
Q ss_pred cCcceecccc--c----chH-HHHHH-HHHH----------------------------cCCCCEEEE-ccCCCCCChhH
Q psy7718 82 KNGCLCCSVK--D----NGV-KAIEN-LMLK----------------------------RGKFDYILL-ETTGLADPGPI 124 (184)
Q Consensus 82 ~~gci~~~~~--~----~~~-~~l~~-ll~~----------------------------~~~~d~iii-E~tg~~dp~~i 124 (184)
+|..+.+... . ... ....+ ++.. ..+|+++++ ||+...||...
T Consensus 100 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~ 179 (226)
T cd03234 100 ETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTA 179 (226)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHH
Confidence 5544322110 0 000 00111 1110 157999999 99999999876
Q ss_pred HHHhh
Q psy7718 125 AKVFW 129 (184)
Q Consensus 125 ~~~l~ 129 (184)
..+..
T Consensus 180 ~~~~~ 184 (226)
T cd03234 180 LNLVS 184 (226)
T ss_pred HHHHH
Confidence 65543
No 144
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.54 E-value=3.6e-14 Score=109.86 Aligned_cols=122 Identities=14% Similarity=0.027 Sum_probs=79.8
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhc--CCCCeEEEEecccC--Ccc---ccc-ceeEecCCCchhh
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTE--QHDKKIAVILNEFG--EGS---AME-KSVSVGDNGNLYE 76 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~--~~~~~~~vi~~~~~--~~~---~~~-~~~~~~~~~~l~~ 76 (184)
.++.+++++||++.+|++++|+|+||||||||++.|++. ..+.+|.|..++.. ... ... ...+++|...++.
T Consensus 11 ~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (200)
T cd03217 11 GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIP 90 (200)
T ss_pred CCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhcc
Confidence 456799999999999999999999999999999999998 36777877775432 111 111 2345667655544
Q ss_pred hhhhhcCcceec-cccc--chHHHHHHHHHHcCCCCEEEE-ccCCCCCChhHHHHh
Q psy7718 77 EWLELKNGCLCC-SVKD--NGVKAIENLMLKRGKFDYILL-ETTGLADPGPIAKVF 128 (184)
Q Consensus 77 ~~~~l~~gci~~-~~~~--~~~~~l~~ll~~~~~~d~iii-E~tg~~dp~~i~~~l 128 (184)
.++..++..... .+.+ ...-.+.+.+ ..+|+++++ ||+...||....+++
T Consensus 91 ~~~~~~~l~~~~~~LS~G~~qrv~laral--~~~p~illlDEPt~~LD~~~~~~l~ 144 (200)
T cd03217 91 GVKNADFLRYVNEGFSGGEKKRNEILQLL--LLEPDLAILDEPDSGLDIDALRLVA 144 (200)
T ss_pred CccHHHHHhhccccCCHHHHHHHHHHHHH--hcCCCEEEEeCCCccCCHHHHHHHH
Confidence 333322211110 1111 1122444544 358999999 999999998765544
No 145
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.54 E-value=1.8e-14 Score=115.48 Aligned_cols=124 Identities=16% Similarity=0.118 Sum_probs=80.0
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccC--Cc---ccccceeEecCCCchhhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFG--EG---SAMEKSVSVGDNGNLYEEW 78 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~--~~---~~~~~~~~~~~~~~l~~~~ 78 (184)
+.++.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++.. .. .......+++|...++...
T Consensus 11 ~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (256)
T TIGR03873 11 AGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPL 90 (256)
T ss_pred ECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCC
Confidence 345679999999999999999999999999999999999888878877765432 11 1111233556665444444
Q ss_pred hhhcCcceec-c---c----ccchHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCC
Q psy7718 79 LELKNGCLCC-S---V----KDNGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADP 121 (184)
Q Consensus 79 ~~l~~gci~~-~---~----~~~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp 121 (184)
+..+|..... . . .......+.+++++ ..+|+++++ ||+...||
T Consensus 91 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~ 170 (256)
T TIGR03873 91 TVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDV 170 (256)
T ss_pred CHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCH
Confidence 4555543321 0 0 00011112222211 157999999 99999999
Q ss_pred hhHHHH
Q psy7718 122 GPIAKV 127 (184)
Q Consensus 122 ~~i~~~ 127 (184)
.....+
T Consensus 171 ~~~~~l 176 (256)
T TIGR03873 171 RAQLET 176 (256)
T ss_pred HHHHHH
Confidence 866544
No 146
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.54 E-value=2.2e-14 Score=113.61 Aligned_cols=121 Identities=18% Similarity=0.073 Sum_probs=80.2
Q ss_pred CCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcc---cccceeEecCCCchhhhhhhhcCc
Q psy7718 8 EVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGS---AMEKSVSVGDNGNLYEEWLELKNG 84 (184)
Q Consensus 8 ~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~---~~~~~~~~~~~~~l~~~~~~l~~g 84 (184)
.+|+++||++.+|++++|+|+||||||||++.|.|..++.+|.|..++..-.. .......++|+..+++..+..+|.
T Consensus 13 ~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l 92 (235)
T cd03299 13 FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNI 92 (235)
T ss_pred ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHH
Confidence 38999999999999999999999999999999999988888888776532111 112334556665555544455554
Q ss_pred ceeccccc----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHHHHh
Q psy7718 85 CLCCSVKD----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIAKVF 128 (184)
Q Consensus 85 ci~~~~~~----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~~~l 128 (184)
++.+...+ .....+.++++. ..+|+++++ ||+...|+....++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~ 169 (235)
T cd03299 93 AYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLR 169 (235)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHH
Confidence 43321110 011111121111 168999999 999999998766544
No 147
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.54 E-value=2.3e-14 Score=116.12 Aligned_cols=51 Identities=18% Similarity=0.123 Sum_probs=46.5
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEeccc
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEF 56 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~ 56 (184)
+..+|++|||++.+|++++|+|+||||||||++.|+|..++.+|.|..++.
T Consensus 14 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 64 (274)
T PRK13644 14 GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGI 64 (274)
T ss_pred CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 456999999999999999999999999999999999998888888887653
No 148
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.53 E-value=2.5e-14 Score=115.62 Aligned_cols=122 Identities=15% Similarity=0.113 Sum_probs=78.6
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc-----ccccceeEecCCCc-hhhhhh
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG-----SAMEKSVSVGDNGN-LYEEWL 79 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~-l~~~~~ 79 (184)
++.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..-. .......+++|++. .+...+
T Consensus 21 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~t 100 (271)
T PRK13632 21 ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGAT 100 (271)
T ss_pred CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCccc
Confidence 467999999999999999999999999999999999998888888877653211 11122335666542 233334
Q ss_pred hhcCcceeccc---c-cchHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHHH
Q psy7718 80 ELKNGCLCCSV---K-DNGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIAK 126 (184)
Q Consensus 80 ~l~~gci~~~~---~-~~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~~ 126 (184)
..+|..+.+.. . ......+.+++++ ..+|+++++ ||+...||.....
T Consensus 101 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~ 180 (271)
T PRK13632 101 VEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKRE 180 (271)
T ss_pred HHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 44544332110 0 0001111111111 268999999 9999999986554
Q ss_pred H
Q psy7718 127 V 127 (184)
Q Consensus 127 ~ 127 (184)
+
T Consensus 181 l 181 (271)
T PRK13632 181 I 181 (271)
T ss_pred H
Confidence 4
No 149
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.53 E-value=4.4e-14 Score=113.10 Aligned_cols=51 Identities=27% Similarity=0.294 Sum_probs=45.7
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
.++.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..+.
T Consensus 15 ~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~ 65 (251)
T PRK09544 15 GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG 65 (251)
T ss_pred CCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 346799999999999999999999999999999999999888888776653
No 150
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.53 E-value=2.6e-14 Score=115.55 Aligned_cols=52 Identities=27% Similarity=0.257 Sum_probs=47.1
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
+.++.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++
T Consensus 11 ~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 62 (271)
T PRK13638 11 YQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQG 62 (271)
T ss_pred cCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECC
Confidence 4456799999999999999999999999999999999999888888887754
No 151
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.53 E-value=2.7e-14 Score=116.35 Aligned_cols=49 Identities=22% Similarity=0.247 Sum_probs=45.7
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
+.+|++|||++++|++++|+|+||||||||++.|+|...+.+|.|..++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g 68 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDD 68 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence 4699999999999999999999999999999999999888888888765
No 152
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.53 E-value=5.1e-14 Score=113.77 Aligned_cols=124 Identities=17% Similarity=0.116 Sum_probs=78.5
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCC-----CCeEEEEecccCC-------cccccceeEecCC
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQH-----DKKIAVILNEFGE-------GSAMEKSVSVGDN 71 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~-----~~~~~vi~~~~~~-------~~~~~~~~~~~~~ 71 (184)
+.++.+|+++||++.+|++++|+|+||||||||++.|+|..+ +.+|.|..++..- ........+++|.
T Consensus 23 ~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~ 102 (269)
T PRK14259 23 YGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQ 102 (269)
T ss_pred ECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccC
Confidence 344679999999999999999999999999999999999754 4677777654210 0111223456776
Q ss_pred CchhhhhhhhcCcceeccccc---c----hHHHHHHH---------HH-------------------HcCCCCEEEE-cc
Q psy7718 72 GNLYEEWLELKNGCLCCSVKD---N----GVKAIENL---------ML-------------------KRGKFDYILL-ET 115 (184)
Q Consensus 72 ~~l~~~~~~l~~gci~~~~~~---~----~~~~l~~l---------l~-------------------~~~~~d~iii-E~ 115 (184)
..++.. +..+|..+.+...+ . ....+..+ +. -..+|+++++ ||
T Consensus 103 ~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP 181 (269)
T PRK14259 103 PNPFPK-SIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEP 181 (269)
T ss_pred Cccchh-hHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 555542 44555443221110 0 00011110 00 0268999999 99
Q ss_pred CCCCCChhHHHHh
Q psy7718 116 TGLADPGPIAKVF 128 (184)
Q Consensus 116 tg~~dp~~i~~~l 128 (184)
+...||.....+.
T Consensus 182 t~gLD~~~~~~l~ 194 (269)
T PRK14259 182 CSALDPISTLKIE 194 (269)
T ss_pred CccCCHHHHHHHH
Confidence 9999998765544
No 153
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.53 E-value=1.3e-13 Score=108.02 Aligned_cols=119 Identities=15% Similarity=0.132 Sum_probs=79.6
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc-----ccccceeEecCCCchhhhhhhh
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG-----SAMEKSVSVGDNGNLYEEWLEL 81 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~l 81 (184)
+.+|+++||++++|++++|+|+||||||||++.|+|...+.+|.|..++..-. .......+++|...+++. +..
T Consensus 17 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~-tv~ 95 (221)
T cd03244 17 PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSG-TIR 95 (221)
T ss_pred cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccc-hHH
Confidence 57999999999999999999999999999999999998888888877653211 112233456666555442 445
Q ss_pred cCcceecccc-cchHH-------------------------------------HHHHHHHHcCCCCEEEE-ccCCCCCCh
Q psy7718 82 KNGCLCCSVK-DNGVK-------------------------------------AIENLMLKRGKFDYILL-ETTGLADPG 122 (184)
Q Consensus 82 ~~gci~~~~~-~~~~~-------------------------------------~l~~ll~~~~~~d~iii-E~tg~~dp~ 122 (184)
+|....+... .+... .|.+.+ ..+|+++++ ||+...||.
T Consensus 96 enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral--~~~p~llllDEP~~~LD~~ 173 (221)
T cd03244 96 SNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARAL--LRKSKILVLDEATASVDPE 173 (221)
T ss_pred HHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHH--hcCCCEEEEeCccccCCHH
Confidence 5543322111 00000 111111 258999999 999999998
Q ss_pred hHHHHh
Q psy7718 123 PIAKVF 128 (184)
Q Consensus 123 ~i~~~l 128 (184)
...++.
T Consensus 174 ~~~~l~ 179 (221)
T cd03244 174 TDALIQ 179 (221)
T ss_pred HHHHHH
Confidence 766544
No 154
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.53 E-value=2.9e-14 Score=109.89 Aligned_cols=50 Identities=22% Similarity=0.327 Sum_probs=43.9
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEeccc
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEF 56 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~ 56 (184)
++.+++ +||++++|++++|+|+||||||||++.|+|..++.+|.|..++.
T Consensus 13 ~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 62 (195)
T PRK13541 13 QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNC 62 (195)
T ss_pred CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCc
Confidence 345565 99999999999999999999999999999998888888877653
No 155
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.53 E-value=2.2e-14 Score=112.97 Aligned_cols=52 Identities=21% Similarity=0.082 Sum_probs=47.0
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
|+++.+|+++||++++|++++|+|+||||||||++.|++..++.+|.|..++
T Consensus 32 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g 83 (224)
T cd03220 32 VGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG 83 (224)
T ss_pred cCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 4567799999999999999999999999999999999999888888887654
No 156
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.53 E-value=3.1e-14 Score=123.94 Aligned_cols=125 Identities=17% Similarity=0.149 Sum_probs=80.9
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccC--Ccc----cccceeEecCCCchhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFG--EGS----AMEKSVSVGDNGNLYEE 77 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~--~~~----~~~~~~~~~~~~~l~~~ 77 (184)
|.++.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++.. ... ......+++|...++..
T Consensus 8 ~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 87 (491)
T PRK10982 8 FPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQ 87 (491)
T ss_pred eCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccC
Confidence 445679999999999999999999999999999999999988888888775421 110 11223356666544444
Q ss_pred hhhhcCcceecc-ccc------chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCC
Q psy7718 78 WLELKNGCLCCS-VKD------NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADP 121 (184)
Q Consensus 78 ~~~l~~gci~~~-~~~------~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp 121 (184)
++..+|..+.+. ..+ .....+.+++.+ ..+|+++++ |||...||
T Consensus 88 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~ 167 (491)
T PRK10982 88 RSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTE 167 (491)
T ss_pred CCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Confidence 444444332210 000 000111111110 258999999 99999999
Q ss_pred hhHHHHh
Q psy7718 122 GPIAKVF 128 (184)
Q Consensus 122 ~~i~~~l 128 (184)
....++.
T Consensus 168 ~~~~~l~ 174 (491)
T PRK10982 168 KEVNHLF 174 (491)
T ss_pred HHHHHHH
Confidence 8766553
No 157
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.53 E-value=2.8e-14 Score=108.59 Aligned_cols=100 Identities=17% Similarity=0.067 Sum_probs=72.2
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcccccceeEecCCCchhhhhhhhcC
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLELKN 83 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 83 (184)
++++.+++++ |++++|++++|+|+||||||||++.|++..++.+|.|..++.. ...++|... ++.
T Consensus 10 ~~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-------i~~~~q~~~-------LSg 74 (177)
T cd03222 10 YGVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT-------PVYKPQYID-------LSG 74 (177)
T ss_pred ECCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE-------EEEEcccCC-------CCH
Confidence 4556788884 9999999999999999999999999999988888888765421 122344321 332
Q ss_pred cceecccccchHHHHHHHHHHcCCCCEEEE-ccCCCCCChhHHHH
Q psy7718 84 GCLCCSVKDNGVKAIENLMLKRGKFDYILL-ETTGLADPGPIAKV 127 (184)
Q Consensus 84 gci~~~~~~~~~~~l~~ll~~~~~~d~iii-E~tg~~dp~~i~~~ 127 (184)
| ....-.+.+.+. .+|+++++ ||+...||.....+
T Consensus 75 G-------q~qrv~laral~--~~p~lllLDEPts~LD~~~~~~l 110 (177)
T cd03222 75 G-------ELQRVAIAAALL--RNATFYLFDEPSAYLDIEQRLNA 110 (177)
T ss_pred H-------HHHHHHHHHHHh--cCCCEEEEECCcccCCHHHHHHH
Confidence 2 222334555543 58999999 99999999875543
No 158
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.53 E-value=3.6e-14 Score=113.84 Aligned_cols=81 Identities=19% Similarity=0.085 Sum_probs=56.2
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCC-----CeEEEEecccCCc-------ccccceeEecCC
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHD-----KKIAVILNEFGEG-------SAMEKSVSVGDN 71 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~-----~~~~vi~~~~~~~-------~~~~~~~~~~~~ 71 (184)
+.++.+|+++||++.+|++++|+|+||||||||++.|+|...+ .+|.|..++..-. .......+++|.
T Consensus 14 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~ 93 (258)
T PRK14241 14 YGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQR 93 (258)
T ss_pred ECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccc
Confidence 3456799999999999999999999999999999999998653 5787776542110 111223456666
Q ss_pred CchhhhhhhhcCc
Q psy7718 72 GNLYEEWLELKNG 84 (184)
Q Consensus 72 ~~l~~~~~~l~~g 84 (184)
..++...+..+|.
T Consensus 94 ~~~~~~~tv~~nl 106 (258)
T PRK14241 94 PNPFPTMSIRDNV 106 (258)
T ss_pred cccCCCCcHHHHH
Confidence 5544444444443
No 159
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.53 E-value=4.7e-14 Score=109.31 Aligned_cols=48 Identities=23% Similarity=0.241 Sum_probs=44.1
Q ss_pred CCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 8 EVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 8 ~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
.+|+++||++++|++++|+|+||||||||++.|+|..++.+|.|..++
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g 66 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG 66 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC
Confidence 699999999999999999999999999999999999888888776654
No 160
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.53 E-value=8.1e-14 Score=110.05 Aligned_cols=118 Identities=17% Similarity=0.079 Sum_probs=77.7
Q ss_pred CCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc-----ccccceeEecCCCchhhhhhhhc
Q psy7718 8 EVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG-----SAMEKSVSVGDNGNLYEEWLELK 82 (184)
Q Consensus 8 ~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~l~ 82 (184)
.+++++||++++|++++|+|+||||||||++.|+|..++.+|.|..++..-. .......+++|+..+++ .+..+
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e 94 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTVAE 94 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccHHH
Confidence 7999999999999999999999999999999999998888888877542211 11122335566654443 24444
Q ss_pred Ccceeccccc--ch-------------------------------------HHHHHHHHHHcCCCCEEEE-ccCCCCCCh
Q psy7718 83 NGCLCCSVKD--NG-------------------------------------VKAIENLMLKRGKFDYILL-ETTGLADPG 122 (184)
Q Consensus 83 ~gci~~~~~~--~~-------------------------------------~~~l~~ll~~~~~~d~iii-E~tg~~dp~ 122 (184)
|..+.+.... .. .-.|.+.+ ..+|+++++ ||+...||.
T Consensus 95 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al--~~~p~lllLDEP~~~LD~~ 172 (234)
T cd03251 95 NIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARAL--LKDPPILILDEATSALDTE 172 (234)
T ss_pred HhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHH--hcCCCEEEEeCccccCCHH
Confidence 4433221100 00 00111111 258999999 999999998
Q ss_pred hHHHHh
Q psy7718 123 PIAKVF 128 (184)
Q Consensus 123 ~i~~~l 128 (184)
....+.
T Consensus 173 ~~~~l~ 178 (234)
T cd03251 173 SERLVQ 178 (234)
T ss_pred HHHHHH
Confidence 765544
No 161
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.53 E-value=2.3e-14 Score=111.13 Aligned_cols=122 Identities=11% Similarity=0.105 Sum_probs=80.9
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCC---CCeEEEEecccCCc----ccccceeEecCCCchhhh
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQH---DKKIAVILNEFGEG----SAMEKSVSVGDNGNLYEE 77 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~---~~~~~vi~~~~~~~----~~~~~~~~~~~~~~l~~~ 77 (184)
+++.+|+++||++.+|++++|+|+||||||||++.|+|..+ +.+|.|..++..-. .......+++|...++..
T Consensus 18 ~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 97 (202)
T cd03233 18 SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPT 97 (202)
T ss_pred CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCC
Confidence 35679999999999999999999999999999999999876 67888776543211 111223355665555444
Q ss_pred hhhhcCcceecc---------cc-c-chHHHHHHHHHHcCCCCEEEE-ccCCCCCChhHHHHh
Q psy7718 78 WLELKNGCLCCS---------VK-D-NGVKAIENLMLKRGKFDYILL-ETTGLADPGPIAKVF 128 (184)
Q Consensus 78 ~~~l~~gci~~~---------~~-~-~~~~~l~~ll~~~~~~d~iii-E~tg~~dp~~i~~~l 128 (184)
++..+|.-+... +. + ...-.+.+.+ ..+|+++++ ||+...||.....++
T Consensus 98 ~tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral--~~~p~llllDEPt~~LD~~~~~~~~ 158 (202)
T cd03233 98 LTVRETLDFALRCKGNEFVRGISGGERKRVSIAEAL--VSRASVLCWDNSTRGLDSSTALEIL 158 (202)
T ss_pred CcHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHH--hhCCCEEEEcCCCccCCHHHHHHHH
Confidence 444444322111 10 1 1112344443 358999999 999999998766554
No 162
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.52 E-value=1.2e-13 Score=109.31 Aligned_cols=119 Identities=18% Similarity=0.134 Sum_probs=79.3
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc-----ccccceeEecCCCchhhhhhhh
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG-----SAMEKSVSVGDNGNLYEEWLEL 81 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~l 81 (184)
+.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..-. .......+++|...+++ .+..
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~ 93 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-RSIR 93 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-chHH
Confidence 57999999999999999999999999999999999998888888877653211 11122345666655443 3445
Q ss_pred cCcceecccc--cchHH-------------------------------------HHHHHHHHcCCCCEEEE-ccCCCCCC
Q psy7718 82 KNGCLCCSVK--DNGVK-------------------------------------AIENLMLKRGKFDYILL-ETTGLADP 121 (184)
Q Consensus 82 ~~gci~~~~~--~~~~~-------------------------------------~l~~ll~~~~~~d~iii-E~tg~~dp 121 (184)
+|.++..... ..... .|.+.+ ..+|+++++ ||+...||
T Consensus 94 ~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral--~~~p~llllDEP~~~LD~ 171 (237)
T cd03252 94 DNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARAL--IHNPRILIFDEATSALDY 171 (237)
T ss_pred HHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHH--hhCCCEEEEeCCcccCCH
Confidence 5544322110 00000 111111 258999999 99999999
Q ss_pred hhHHHHh
Q psy7718 122 GPIAKVF 128 (184)
Q Consensus 122 ~~i~~~l 128 (184)
....++.
T Consensus 172 ~~~~~l~ 178 (237)
T cd03252 172 ESEHAIM 178 (237)
T ss_pred HHHHHHH
Confidence 8766544
No 163
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.52 E-value=3.1e-14 Score=115.48 Aligned_cols=50 Identities=18% Similarity=0.126 Sum_probs=45.7
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
...+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++
T Consensus 16 ~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g 65 (277)
T PRK13652 16 SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRG 65 (277)
T ss_pred CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECC
Confidence 34699999999999999999999999999999999999888888887754
No 164
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.52 E-value=9.6e-14 Score=108.67 Aligned_cols=120 Identities=19% Similarity=0.125 Sum_probs=78.2
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc-----ccccceeEecCCCchhhhhhhh
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG-----SAMEKSVSVGDNGNLYEEWLEL 81 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~l 81 (184)
+.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..-. .......+++|+..++. .+..
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~ 95 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-GTLR 95 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-chHH
Confidence 56999999999999999999999999999999999988777787776543110 11112335666655443 2444
Q ss_pred cCcceeccccc--chH-------------------------------------HHHHHHHHHcCCCCEEEE-ccCCCCCC
Q psy7718 82 KNGCLCCSVKD--NGV-------------------------------------KAIENLMLKRGKFDYILL-ETTGLADP 121 (184)
Q Consensus 82 ~~gci~~~~~~--~~~-------------------------------------~~l~~ll~~~~~~d~iii-E~tg~~dp 121 (184)
+|..+.+.... ... -.|.+.+ ..+|+++++ ||+...||
T Consensus 96 e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al--~~~p~llllDEPt~~LD~ 173 (220)
T cd03245 96 DNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARAL--LNDPPILLLDEPTSAMDM 173 (220)
T ss_pred HHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHH--hcCCCEEEEeCccccCCH
Confidence 44332211100 000 0111111 257999999 99999999
Q ss_pred hhHHHHhh
Q psy7718 122 GPIAKVFW 129 (184)
Q Consensus 122 ~~i~~~l~ 129 (184)
....++..
T Consensus 174 ~~~~~l~~ 181 (220)
T cd03245 174 NSEERLKE 181 (220)
T ss_pred HHHHHHHH
Confidence 87766554
No 165
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.52 E-value=3.1e-14 Score=116.26 Aligned_cols=50 Identities=22% Similarity=0.163 Sum_probs=45.9
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEeccc
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEF 56 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~ 56 (184)
..+|++|||++++|++++|+|+||||||||++.|+|...+.+|.|..++.
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 69 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGER 69 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCE
Confidence 56999999999999999999999999999999999998888888877653
No 166
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.52 E-value=5.1e-14 Score=109.88 Aligned_cols=120 Identities=19% Similarity=0.143 Sum_probs=80.0
Q ss_pred CCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCC--c-ccccceeEecCCCchhhhhhhhcCcc
Q psy7718 9 VPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGE--G-SAMEKSVSVGDNGNLYEEWLELKNGC 85 (184)
Q Consensus 9 ~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~--~-~~~~~~~~~~~~~~l~~~~~~l~~gc 85 (184)
.+.++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..- . .......+++|...++..++..+|..
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~ 92 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIG 92 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHH
Confidence 56899999999999999999999999999999999888888887754321 1 11123446677766665555556554
Q ss_pred eecc--cc--cchHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHHHHh
Q psy7718 86 LCCS--VK--DNGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIAKVF 128 (184)
Q Consensus 86 i~~~--~~--~~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~~~l 128 (184)
+... .. ......+.++++. ..+|+++++ ||+...|+.....++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~ 168 (213)
T TIGR01277 93 LGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEML 168 (213)
T ss_pred hHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH
Confidence 3211 00 0011112222111 168999999 999999998766544
No 167
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.52 E-value=2.7e-14 Score=119.63 Aligned_cols=116 Identities=18% Similarity=0.089 Sum_probs=78.7
Q ss_pred cccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCC--c-------ccccceeEecCCCchhhhhhhhc
Q psy7718 12 LVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGE--G-------SAMEKSVSVGDNGNLYEEWLELK 82 (184)
Q Consensus 12 ~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~--~-------~~~~~~~~~~~~~~l~~~~~~l~ 82 (184)
++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..- . .......+++|+..++..++..+
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 94 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRG 94 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHH
Confidence 89999999999999999999999999999999888888887754211 0 11123446778777776666666
Q ss_pred Ccceecccc--cchHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHHHH
Q psy7718 83 NGCLCCSVK--DNGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIAKV 127 (184)
Q Consensus 83 ~gci~~~~~--~~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~~~ 127 (184)
|..+..... ......+.+++++ ..+|+++++ ||+...||....++
T Consensus 95 nl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l 170 (354)
T TIGR02142 95 NLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEI 170 (354)
T ss_pred HHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHH
Confidence 655432111 0101112222211 168999999 99999999865443
No 168
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.52 E-value=5.5e-14 Score=112.37 Aligned_cols=51 Identities=22% Similarity=0.298 Sum_probs=43.7
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCC-----CCeEEEEecc
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQH-----DKKIAVILNE 55 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~-----~~~~~vi~~~ 55 (184)
.++.+|+++||++.+|++++|+|+||||||||++.|+|... +.+|.|..++
T Consensus 17 ~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14242 17 GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDG 72 (253)
T ss_pred CCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECC
Confidence 34679999999999999999999999999999999999742 4577776654
No 169
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.52 E-value=4.4e-14 Score=113.47 Aligned_cols=84 Identities=14% Similarity=0.035 Sum_probs=57.9
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc--------cCCc---ccccceeEecCCC
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE--------FGEG---SAMEKSVSVGDNG 72 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~--------~~~~---~~~~~~~~~~~~~ 72 (184)
+.++.+|+++||++.+|++++|+|+||||||||++.|+|...+.++.|..++ .... .......+++|.+
T Consensus 20 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~ 99 (257)
T PRK14246 20 INDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQP 99 (257)
T ss_pred cCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCC
Confidence 4567899999999999999999999999999999999998777665443322 1100 1112234566666
Q ss_pred chhhhhhhhcCccee
Q psy7718 73 NLYEEWLELKNGCLC 87 (184)
Q Consensus 73 ~l~~~~~~l~~gci~ 87 (184)
.++..++..+|.++.
T Consensus 100 ~~~~~~tv~~nl~~~ 114 (257)
T PRK14246 100 NPFPHLSIYDNIAYP 114 (257)
T ss_pred ccCCCCcHHHHHHHH
Confidence 555554555555443
No 170
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.52 E-value=4e-14 Score=115.50 Aligned_cols=50 Identities=22% Similarity=0.204 Sum_probs=46.0
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEeccc
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEF 56 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~ 56 (184)
+.+|++|||++.+|++++|+|+||||||||++.|.|..++.+|.|..++.
T Consensus 19 ~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 68 (288)
T PRK13643 19 SRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDI 68 (288)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCE
Confidence 36999999999999999999999999999999999998888888887654
No 171
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.52 E-value=8.8e-14 Score=111.01 Aligned_cols=123 Identities=18% Similarity=0.127 Sum_probs=77.6
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCC--C---CeEEEEecccCCc-------ccccceeEecCCC
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQH--D---KKIAVILNEFGEG-------SAMEKSVSVGDNG 72 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~--~---~~~~vi~~~~~~~-------~~~~~~~~~~~~~ 72 (184)
.++.+++++||++.+|++++|+|+||||||||++.|+|..+ + .+|.|..++..-. .......+++|..
T Consensus 14 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 93 (250)
T PRK14240 14 GDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQP 93 (250)
T ss_pred CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCC
Confidence 44679999999999999999999999999999999999643 2 4677776542210 1112234566665
Q ss_pred chhhhhhhhcCcceeccccc-----chHHHHHH-------------HHHH-------------------cCCCCEEEE-c
Q psy7718 73 NLYEEWLELKNGCLCCSVKD-----NGVKAIEN-------------LMLK-------------------RGKFDYILL-E 114 (184)
Q Consensus 73 ~l~~~~~~l~~gci~~~~~~-----~~~~~l~~-------------ll~~-------------------~~~~d~iii-E 114 (184)
.++. .+..+|..+.+...+ .....+.+ .+.+ ..+|+++++ |
T Consensus 94 ~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 172 (250)
T PRK14240 94 NPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDE 172 (250)
T ss_pred ccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 5444 444455433221100 00111110 0010 258999999 9
Q ss_pred cCCCCCChhHHHHh
Q psy7718 115 TTGLADPGPIAKVF 128 (184)
Q Consensus 115 ~tg~~dp~~i~~~l 128 (184)
|+...||.....+.
T Consensus 173 P~~~LD~~~~~~l~ 186 (250)
T PRK14240 173 PTSALDPISTLKIE 186 (250)
T ss_pred CCccCCHHHHHHHH
Confidence 99999998766544
No 172
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.52 E-value=3.3e-14 Score=115.71 Aligned_cols=122 Identities=16% Similarity=0.116 Sum_probs=79.4
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc-------ccccceeEecCCCc-hhhh
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG-------SAMEKSVSVGDNGN-LYEE 77 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~-------~~~~~~~~~~~~~~-l~~~ 77 (184)
++.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..-. .......+++|++. .+..
T Consensus 18 ~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 97 (283)
T PRK13636 18 GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFS 97 (283)
T ss_pred CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhcc
Confidence 467999999999999999999999999999999999998888888887653211 11123445666642 1112
Q ss_pred hhhhcCcceecc---cc-cchHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhH
Q psy7718 78 WLELKNGCLCCS---VK-DNGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPI 124 (184)
Q Consensus 78 ~~~l~~gci~~~---~~-~~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i 124 (184)
.+..+|.+.... .. ......+.++++. ..+|+++++ ||+...||...
T Consensus 98 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~ 177 (283)
T PRK13636 98 ASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGV 177 (283)
T ss_pred ccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHH
Confidence 344454433211 00 0011112222211 168999999 99999999876
Q ss_pred HHH
Q psy7718 125 AKV 127 (184)
Q Consensus 125 ~~~ 127 (184)
..+
T Consensus 178 ~~l 180 (283)
T PRK13636 178 SEI 180 (283)
T ss_pred HHH
Confidence 543
No 173
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.52 E-value=4.4e-14 Score=113.84 Aligned_cols=50 Identities=20% Similarity=0.201 Sum_probs=46.0
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
++.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++
T Consensus 23 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 72 (265)
T TIGR02769 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRG 72 (265)
T ss_pred ceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC
Confidence 46799999999999999999999999999999999999888888887764
No 174
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.52 E-value=3.8e-14 Score=114.33 Aligned_cols=51 Identities=20% Similarity=0.213 Sum_probs=44.5
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCC-----CCeEEEEecc
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQH-----DKKIAVILNE 55 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~-----~~~~~vi~~~ 55 (184)
.++.+|+++||++.+|++++|+|+||||||||++.|+|... +..|.|..++
T Consensus 30 ~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g 85 (267)
T PRK14235 30 GEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85 (267)
T ss_pred CCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 44679999999999999999999999999999999999765 3678877654
No 175
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.52 E-value=5.4e-14 Score=110.24 Aligned_cols=48 Identities=21% Similarity=0.248 Sum_probs=45.6
Q ss_pred CCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 8 EVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 8 ~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
.++++|||++.+|++++|+|++|||||||.+.|+|..++..|.|..++
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G 68 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDG 68 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECC
Confidence 499999999999999999999999999999999999999999998866
No 176
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.52 E-value=1.5e-13 Score=108.90 Aligned_cols=49 Identities=14% Similarity=0.230 Sum_probs=45.2
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
..+|+++||++++|++++|+|+||||||||++.|+|..++.+|.|..++
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g 64 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDG 64 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECC
Confidence 4699999999999999999999999999999999999888888887765
No 177
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.52 E-value=3.1e-14 Score=115.25 Aligned_cols=52 Identities=27% Similarity=0.314 Sum_probs=45.6
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCC--------eEEEEecc
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDK--------KIAVILNE 55 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~--------~~~vi~~~ 55 (184)
+.++.+|+++||++.+|++++|+|+||||||||++.|+|..++. +|.|..++
T Consensus 11 ~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g 70 (272)
T PRK13547 11 RRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNG 70 (272)
T ss_pred ECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECC
Confidence 34567999999999999999999999999999999999987765 77777654
No 178
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.52 E-value=3e-14 Score=124.32 Aligned_cols=125 Identities=16% Similarity=0.076 Sum_probs=80.8
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCC--cc----cccceeEecCCCchhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGE--GS----AMEKSVSVGDNGNLYEE 77 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~--~~----~~~~~~~~~~~~~l~~~ 77 (184)
|.++.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..- .. ......+++|...++..
T Consensus 14 ~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK11288 14 FPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPE 93 (501)
T ss_pred ECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCC
Confidence 4456799999999999999999999999999999999999888888887654211 00 11123356666555444
Q ss_pred hhhhcCcceecc--ccc-----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCC
Q psy7718 78 WLELKNGCLCCS--VKD-----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADP 121 (184)
Q Consensus 78 ~~~l~~gci~~~--~~~-----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp 121 (184)
++..+|..+.+. ..+ .....+.+++++ ..+|+++++ |||...||
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~ 173 (501)
T PRK11288 94 MTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSA 173 (501)
T ss_pred CCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCH
Confidence 444444433210 000 001111111111 258999999 99999999
Q ss_pred hhHHHHh
Q psy7718 122 GPIAKVF 128 (184)
Q Consensus 122 ~~i~~~l 128 (184)
....+++
T Consensus 174 ~~~~~l~ 180 (501)
T PRK11288 174 REIEQLF 180 (501)
T ss_pred HHHHHHH
Confidence 8766554
No 179
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.51 E-value=7.9e-14 Score=111.57 Aligned_cols=52 Identities=19% Similarity=0.197 Sum_probs=44.7
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCC-----CeEEEEecc
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHD-----KKIAVILNE 55 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~-----~~~~vi~~~ 55 (184)
+.++.+|+++||++.+|++++|+|+||||||||++.|+|..++ .+|.|..++
T Consensus 17 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 73 (254)
T PRK14273 17 YTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG 73 (254)
T ss_pred eCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECC
Confidence 3456799999999999999999999999999999999998664 367776654
No 180
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.51 E-value=4.5e-14 Score=112.05 Aligned_cols=52 Identities=21% Similarity=0.223 Sum_probs=45.5
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcC--CCCeEEEEecc
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQ--HDKKIAVILNE 55 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~--~~~~~~vi~~~ 55 (184)
|.++.+|+++||++++|++++|+|+||||||||++.|+|.. ++.+|.|..++
T Consensus 10 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g 63 (243)
T TIGR01978 10 VEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKG 63 (243)
T ss_pred ECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECC
Confidence 34567999999999999999999999999999999999984 57778887754
No 181
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.51 E-value=5.2e-14 Score=117.85 Aligned_cols=114 Identities=21% Similarity=0.132 Sum_probs=77.6
Q ss_pred cccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccC--C------c-ccccceeEecCCCchhhhhhhhc
Q psy7718 12 LVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFG--E------G-SAMEKSVSVGDNGNLYEEWLELK 82 (184)
Q Consensus 12 ~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~--~------~-~~~~~~~~~~~~~~l~~~~~~l~ 82 (184)
++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++.. . . ...+...+++|+..+++.++..+
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 95 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRG 95 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHH
Confidence 8999999999999999999999999999999988888888775421 1 0 11123446778777776666666
Q ss_pred Ccceecccc--cch--------------------------HHHHHHHHHHcCCCCEEEE-ccCCCCCChhHHHH
Q psy7718 83 NGCLCCSVK--DNG--------------------------VKAIENLMLKRGKFDYILL-ETTGLADPGPIAKV 127 (184)
Q Consensus 83 ~gci~~~~~--~~~--------------------------~~~l~~ll~~~~~~d~iii-E~tg~~dp~~i~~~ 127 (184)
|..+..... ... .-.|.+.+ ..+|+++++ ||+...||.....+
T Consensus 96 nl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL--~~~p~llLLDEPts~LD~~~~~~l 167 (352)
T PRK11144 96 NLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRAL--LTAPELLLMDEPLASLDLPRKREL 167 (352)
T ss_pred HHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHH--HcCCCEEEEcCCcccCCHHHHHHH
Confidence 654321100 000 01111211 268999999 99999999865543
No 182
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.51 E-value=1.5e-14 Score=110.16 Aligned_cols=119 Identities=18% Similarity=0.129 Sum_probs=73.8
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcccc----c-ceeEecCCCchhhh--
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAM----E-KSVSVGDNGNLYEE-- 77 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~~~----~-~~~~~~~~~~l~~~-- 77 (184)
.++.+|+++||++++|++++|+|+||||||||++.|.|..++.+|.|..++..-.... . ...+++| +...
T Consensus 10 ~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q---~l~~~g 86 (180)
T cd03214 10 GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ---ALELLG 86 (180)
T ss_pred CCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHH---HHHHcC
Confidence 3467999999999999999999999999999999999998888888877643211100 0 0111111 0000
Q ss_pred hhhhcCcceecccc--cchHHHHHHHHHHcCCCCEEEE-ccCCCCCChhHHHHhh
Q psy7718 78 WLELKNGCLCCSVK--DNGVKAIENLMLKRGKFDYILL-ETTGLADPGPIAKVFW 129 (184)
Q Consensus 78 ~~~l~~gci~~~~~--~~~~~~l~~ll~~~~~~d~iii-E~tg~~dp~~i~~~l~ 129 (184)
+....+- ....+. ....-.+.+.+ ..+|+++++ ||+...||.....+..
T Consensus 87 l~~~~~~-~~~~LS~G~~qrl~laral--~~~p~llllDEP~~~LD~~~~~~~~~ 138 (180)
T cd03214 87 LAHLADR-PFNELSGGERQRVLLARAL--AQEPPILLLDEPTSHLDIAHQIELLE 138 (180)
T ss_pred CHhHhcC-CcccCCHHHHHHHHHHHHH--hcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 0000000 000111 11223455544 358999999 9999999987665543
No 183
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.51 E-value=8.4e-14 Score=112.05 Aligned_cols=125 Identities=14% Similarity=-0.001 Sum_probs=80.8
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCC-----CeEEEEecccCCc-------ccccceeEecCC
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHD-----KKIAVILNEFGEG-------SAMEKSVSVGDN 71 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~-----~~~~vi~~~~~~~-------~~~~~~~~~~~~ 71 (184)
|.++.+|+++||++.+|++++|+|+||||||||++.|+|...+ .+|.|..++..-. .......+++|+
T Consensus 18 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~ 97 (261)
T PRK14263 18 YGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQ 97 (261)
T ss_pred eCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecC
Confidence 3456799999999999999999999999999999999998654 5777776543210 111223456676
Q ss_pred CchhhhhhhhcCcceecccc---cchHHHHHHHHH--------------------------------HcCCCCEEEE-cc
Q psy7718 72 GNLYEEWLELKNGCLCCSVK---DNGVKAIENLML--------------------------------KRGKFDYILL-ET 115 (184)
Q Consensus 72 ~~l~~~~~~l~~gci~~~~~---~~~~~~l~~ll~--------------------------------~~~~~d~iii-E~ 115 (184)
..++ .++..+|.++.+... ......+.++++ -..+|+++++ ||
T Consensus 98 ~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 176 (261)
T PRK14263 98 PNPF-SMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEP 176 (261)
T ss_pred Cccc-cccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 5554 355556655433211 000001111100 0268999999 99
Q ss_pred CCCCCChhHHHHhh
Q psy7718 116 TGLADPGPIAKVFW 129 (184)
Q Consensus 116 tg~~dp~~i~~~l~ 129 (184)
+...||....+++.
T Consensus 177 tsgLD~~~~~~l~~ 190 (261)
T PRK14263 177 CSALDPIATRRVEE 190 (261)
T ss_pred CccCCHHHHHHHHH
Confidence 99999987666543
No 184
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.51 E-value=4.3e-14 Score=123.24 Aligned_cols=52 Identities=19% Similarity=0.157 Sum_probs=45.6
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCC--CeEEEEecc
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHD--KKIAVILNE 55 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~--~~~~vi~~~ 55 (184)
|.++.+|+++||++.+|++++|+|+||||||||++.|+|..++ .+|.|..++
T Consensus 11 ~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g 64 (500)
T TIGR02633 11 FGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSG 64 (500)
T ss_pred eCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECC
Confidence 4456799999999999999999999999999999999998764 578877654
No 185
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.51 E-value=4.4e-14 Score=114.67 Aligned_cols=49 Identities=16% Similarity=0.168 Sum_probs=45.4
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
+++|+++||++++|++++|+|+||||||||++.|+|..++.+|.|..++
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g 68 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDD 68 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 4699999999999999999999999999999999999888888887754
No 186
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.51 E-value=8.8e-14 Score=110.86 Aligned_cols=125 Identities=14% Similarity=0.063 Sum_probs=79.7
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCC---CCeEEEEecccC--Cc---ccccceeEecCCCchh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQH---DKKIAVILNEFG--EG---SAMEKSVSVGDNGNLY 75 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~---~~~~~vi~~~~~--~~---~~~~~~~~~~~~~~l~ 75 (184)
|.++.+|+++||++.+|++++|+|+||||||||++.|+|... +.+|.|..++.. .. .......+++|...++
T Consensus 12 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~ 91 (246)
T PRK14269 12 YGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVF 91 (246)
T ss_pred ECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccc
Confidence 345679999999999999999999999999999999999753 567777765432 11 1112234566765554
Q ss_pred hhhhhhcCcceeccccc-----c-hHHHHHHHHH--------------------------------HcCCCCEEEE-ccC
Q psy7718 76 EEWLELKNGCLCCSVKD-----N-GVKAIENLML--------------------------------KRGKFDYILL-ETT 116 (184)
Q Consensus 76 ~~~~~l~~gci~~~~~~-----~-~~~~l~~ll~--------------------------------~~~~~d~iii-E~t 116 (184)
. .+..+|..+.+...+ . ....+.++++ -..+|+++++ ||+
T Consensus 92 ~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~ 170 (246)
T PRK14269 92 V-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPT 170 (246)
T ss_pred c-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 4 345555443321110 0 0001111110 0268999999 999
Q ss_pred CCCCChhHHHHhh
Q psy7718 117 GLADPGPIAKVFW 129 (184)
Q Consensus 117 g~~dp~~i~~~l~ 129 (184)
...||....++..
T Consensus 171 ~~LD~~~~~~l~~ 183 (246)
T PRK14269 171 SALDPISSGVIEE 183 (246)
T ss_pred ccCCHHHHHHHHH
Confidence 9999987665543
No 187
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.51 E-value=8.5e-14 Score=111.85 Aligned_cols=52 Identities=19% Similarity=0.196 Sum_probs=44.5
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCC-----CCeEEEEecc
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQH-----DKKIAVILNE 55 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~-----~~~~~vi~~~ 55 (184)
|.+..+|+++||++.+|++++|+|+||||||||++.|+|... +.+|.|..++
T Consensus 23 ~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g 79 (260)
T PRK10744 23 YGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDG 79 (260)
T ss_pred eCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECC
Confidence 344579999999999999999999999999999999999864 3567776654
No 188
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.51 E-value=2.1e-13 Score=107.40 Aligned_cols=49 Identities=27% Similarity=0.374 Sum_probs=45.1
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
+.+++++||++.+|++++|+|+||||||||++.|++..++.+|.|..++
T Consensus 16 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 64 (229)
T cd03254 16 KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDG 64 (229)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECC
Confidence 4699999999999999999999999999999999999888888887754
No 189
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.51 E-value=5.7e-14 Score=110.29 Aligned_cols=48 Identities=21% Similarity=0.249 Sum_probs=44.3
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEec
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILN 54 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~ 54 (184)
..+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..+
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~ 68 (224)
T TIGR02324 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVR 68 (224)
T ss_pred eEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEe
Confidence 469999999999999999999999999999999999988878887765
No 190
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.51 E-value=7.6e-14 Score=110.24 Aligned_cols=117 Identities=19% Similarity=0.139 Sum_probs=75.9
Q ss_pred ccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcc---cccceeEecCCCchhhhhhhhcCccee
Q psy7718 11 DLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGS---AMEKSVSVGDNGNLYEEWLELKNGCLC 87 (184)
Q Consensus 11 ~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~---~~~~~~~~~~~~~l~~~~~~l~~gci~ 87 (184)
.++||++.+|++++|+|+||||||||++.|+|...+.+|.|..++..-.. ......+++|...++..++..+|....
T Consensus 16 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 95 (232)
T PRK10771 16 MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLG 95 (232)
T ss_pred ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcc
Confidence 48999999999999999999999999999999988888888775432111 112334566766555555555554332
Q ss_pred cc--c--ccchHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHHHH
Q psy7718 88 CS--V--KDNGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIAKV 127 (184)
Q Consensus 88 ~~--~--~~~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~~~ 127 (184)
.. . .......+.++++. ..+|+++++ ||+...|+.....+
T Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~ 168 (232)
T PRK10771 96 LNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEM 168 (232)
T ss_pred cccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 10 0 00001111111110 268999999 99999999865443
No 191
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.51 E-value=3.9e-14 Score=120.25 Aligned_cols=126 Identities=17% Similarity=0.112 Sum_probs=93.8
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccC----Cc--ccccceeEecCCCchhhhh
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFG----EG--SAMEKSVSVGDNGNLYEEW 78 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~----~~--~~~~~~~~~~~~~~l~~~~ 78 (184)
.+-.+.++|||++.+|++.++.|.||||||||+++|.|..+|.+|.|..++.. .. ....-..-+.|.+.+.+.+
T Consensus 15 ~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~l 94 (501)
T COG3845 15 PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTL 94 (501)
T ss_pred CCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeecccccccc
Confidence 35668999999999999999999999999999999999999999999986532 11 1111123477888899999
Q ss_pred hhhcCcceeccc-c------cchHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCCh
Q psy7718 79 LELKNGCLCCSV-K------DNGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPG 122 (184)
Q Consensus 79 ~~l~~gci~~~~-~------~~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~ 122 (184)
+.++|.-+.-.- . ......+.++.++ ..+++++|+ |||....|.
T Consensus 95 TV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~ 174 (501)
T COG3845 95 TVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQ 174 (501)
T ss_pred chhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 999997655321 1 1223344444332 157899999 999999999
Q ss_pred hHHHHhhh
Q psy7718 123 PIAKVFWL 130 (184)
Q Consensus 123 ~i~~~l~~ 130 (184)
++-++|..
T Consensus 175 E~~~lf~~ 182 (501)
T COG3845 175 EADELFEI 182 (501)
T ss_pred HHHHHHHH
Confidence 88877654
No 192
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.51 E-value=5.7e-14 Score=115.48 Aligned_cols=48 Identities=21% Similarity=0.171 Sum_probs=44.4
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEec
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILN 54 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~ 54 (184)
..+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..+
T Consensus 20 ~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~ 67 (305)
T PRK13651 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWI 67 (305)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEe
Confidence 369999999999999999999999999999999999988888887775
No 193
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.51 E-value=5.1e-14 Score=108.54 Aligned_cols=51 Identities=35% Similarity=0.369 Sum_probs=46.7
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
.++.++++|||+..+|++.+|+||||||||||+|.|.|+..|..|.+..++
T Consensus 12 ~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g 62 (259)
T COG4559 12 AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNG 62 (259)
T ss_pred ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCC
Confidence 468899999999999999999999999999999999999888887777654
No 194
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.50 E-value=5e-14 Score=113.74 Aligned_cols=50 Identities=22% Similarity=0.180 Sum_probs=45.7
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEeccc
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEF 56 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~ 56 (184)
+.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++.
T Consensus 22 ~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~ 71 (269)
T PRK13648 22 SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQ 71 (269)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCE
Confidence 45999999999999999999999999999999999998888888887653
No 195
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.50 E-value=4.3e-14 Score=105.45 Aligned_cols=51 Identities=20% Similarity=0.306 Sum_probs=46.6
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEec
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILN 54 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~ 54 (184)
..+..+|+++||++.+|+.++|+||+|||||||+|.++....+..|.+...
T Consensus 13 a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~ 63 (223)
T COG4619 13 AGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFE 63 (223)
T ss_pred cCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEc
Confidence 456789999999999999999999999999999999999888888888764
No 196
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.50 E-value=1.2e-13 Score=110.38 Aligned_cols=80 Identities=20% Similarity=0.152 Sum_probs=56.4
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCC-----eEEEEecccCCc-------ccccceeEecCCC
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDK-----KIAVILNEFGEG-------SAMEKSVSVGDNG 72 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~-----~~~vi~~~~~~~-------~~~~~~~~~~~~~ 72 (184)
.++.+|+++||++.+|++++|+|+||||||||++.|+|..++. .|.|..++..-. .......+++|+.
T Consensus 15 ~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 94 (251)
T PRK14249 15 HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQP 94 (251)
T ss_pred CCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCC
Confidence 4467999999999999999999999999999999999987664 477766542210 1112344667766
Q ss_pred chhhhhhhhcCcc
Q psy7718 73 NLYEEWLELKNGC 85 (184)
Q Consensus 73 ~l~~~~~~l~~gc 85 (184)
.++.. +..+|..
T Consensus 95 ~~~~~-tv~enl~ 106 (251)
T PRK14249 95 NPFPK-SIFDNVA 106 (251)
T ss_pred ccCcC-cHHHHHh
Confidence 55442 4444443
No 197
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.50 E-value=6.8e-14 Score=111.71 Aligned_cols=81 Identities=20% Similarity=0.133 Sum_probs=56.1
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCC-----eEEEEecccCCc-------ccccceeEecCCC
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDK-----KIAVILNEFGEG-------SAMEKSVSVGDNG 72 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~-----~~~vi~~~~~~~-------~~~~~~~~~~~~~ 72 (184)
.++.+|+++||++.+|++++|+|+||||||||++.|+|...+. +|.|..++..-. .......+++|+.
T Consensus 15 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 94 (252)
T PRK14272 15 GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKP 94 (252)
T ss_pred CCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccC
Confidence 4567999999999999999999999999999999999986542 677776542211 1112234566665
Q ss_pred chhhhhhhhcCcc
Q psy7718 73 NLYEEWLELKNGC 85 (184)
Q Consensus 73 ~l~~~~~~l~~gc 85 (184)
.++...+..+|.+
T Consensus 95 ~~~~~~t~~enl~ 107 (252)
T PRK14272 95 NPFPTMSVFDNVV 107 (252)
T ss_pred ccCcCCCHHHHHH
Confidence 5554444444443
No 198
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.50 E-value=1.3e-13 Score=111.14 Aligned_cols=52 Identities=17% Similarity=0.267 Sum_probs=44.3
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCC-----CCeEEEEecc
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQH-----DKKIAVILNE 55 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~-----~~~~~vi~~~ 55 (184)
+.++.+|+++||++.+|++++|+|+||||||||++.|+|... +.+|.|..++
T Consensus 31 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 87 (268)
T PRK14248 31 YGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87 (268)
T ss_pred eCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC
Confidence 345679999999999999999999999999999999999642 5677776654
No 199
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.50 E-value=1.1e-13 Score=110.99 Aligned_cols=52 Identities=17% Similarity=0.194 Sum_probs=44.7
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCC-----CeEEEEecc
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHD-----KKIAVILNE 55 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~-----~~~~vi~~~ 55 (184)
+.++.+|+++||++.+|++++|+|+||||||||++.|+|..++ .+|.|..++
T Consensus 22 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 78 (258)
T PRK14268 22 YGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEG 78 (258)
T ss_pred eCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECC
Confidence 3456799999999999999999999999999999999997653 577777654
No 200
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.50 E-value=2.2e-13 Score=107.15 Aligned_cols=120 Identities=21% Similarity=0.126 Sum_probs=79.3
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc-----ccccceeEecCCCchhhhhhhh
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG-----SAMEKSVSVGDNGNLYEEWLEL 81 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~l 81 (184)
..+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..-. .......+++|...+++ .+..
T Consensus 27 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~ 105 (226)
T cd03248 27 TLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFA-RSLQ 105 (226)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHh-hhHH
Confidence 46999999999999999999999999999999999998888888877653211 11122345666655543 2445
Q ss_pred cCcceeccccc--ch---------HH----------------------------HHHHHHHHcCCCCEEEE-ccCCCCCC
Q psy7718 82 KNGCLCCSVKD--NG---------VK----------------------------AIENLMLKRGKFDYILL-ETTGLADP 121 (184)
Q Consensus 82 ~~gci~~~~~~--~~---------~~----------------------------~l~~ll~~~~~~d~iii-E~tg~~dp 121 (184)
+|.++...... .. .. .|.+.+ ..+|+++++ ||+...||
T Consensus 106 ~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral--~~~p~llllDEPt~~LD~ 183 (226)
T cd03248 106 DNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARAL--IRNPQVLILDEATSALDA 183 (226)
T ss_pred HHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHH--hcCCCEEEEeCCcccCCH
Confidence 55443221100 00 00 111111 268999999 99999999
Q ss_pred hhHHHHhh
Q psy7718 122 GPIAKVFW 129 (184)
Q Consensus 122 ~~i~~~l~ 129 (184)
....++..
T Consensus 184 ~~~~~l~~ 191 (226)
T cd03248 184 ESEQQVQQ 191 (226)
T ss_pred HHHHHHHH
Confidence 87766543
No 201
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.50 E-value=6.1e-14 Score=109.67 Aligned_cols=45 Identities=22% Similarity=0.062 Sum_probs=41.7
Q ss_pred CCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEE
Q psy7718 8 EVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVI 52 (184)
Q Consensus 8 ~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi 52 (184)
.+|++|||++.+|++++|+|+||||||||++.|++..++.+|.|.
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~ 45 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFI 45 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEE
Confidence 378999999999999999999999999999999998888888775
No 202
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.49 E-value=3.8e-14 Score=106.92 Aligned_cols=134 Identities=22% Similarity=0.215 Sum_probs=93.6
Q ss_pred CCCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccC-------Cc---ccc--------cc
Q psy7718 3 SDSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFG-------EG---SAM--------EK 64 (184)
Q Consensus 3 ~~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~-------~~---~~~--------~~ 64 (184)
+|+..++|++|||+.+.|.|+.|+|.+|||||||+|++.-...|..+.|.+++.. .+ ..+ .+
T Consensus 15 ~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~ 94 (256)
T COG4598 15 RYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTR 94 (256)
T ss_pred hcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHH
Confidence 4677899999999999999999999999999999999998888888888886421 00 001 11
Q ss_pred eeEecCCCchhhhhhhhcCcceecc--c---ccchHHHHHHHHHH----------------------------cCCCCEE
Q psy7718 65 SVSVGDNGNLYEEWLELKNGCLCCS--V---KDNGVKAIENLMLK----------------------------RGKFDYI 111 (184)
Q Consensus 65 ~~~~~~~~~l~~~~~~l~~gci~~~--~---~~~~~~~l~~ll~~----------------------------~~~~d~i 111 (184)
...++|...++..++.++|.--+.- + +.+..+..+.++.+ .-.|+.+
T Consensus 95 L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vm 174 (256)
T COG4598 95 LGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVM 174 (256)
T ss_pred hhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceE
Confidence 2247899889899999988632221 1 11111111222211 1478988
Q ss_pred EE-ccCCCCCChhHHHHhhhccccCC
Q psy7718 112 LL-ETTGLADPGPIAKVFWLDKELGS 136 (184)
Q Consensus 112 ii-E~tg~~dp~~i~~~l~~~~~~~~ 136 (184)
+. |||...||+-+-+++.....+++
T Consensus 175 LFDEPTSALDPElVgEVLkv~~~LAe 200 (256)
T COG4598 175 LFDEPTSALDPELVGEVLKVMQDLAE 200 (256)
T ss_pred eecCCcccCCHHHHHHHHHHHHHHHH
Confidence 88 99999999987777655444443
No 203
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.49 E-value=8.7e-14 Score=111.14 Aligned_cols=80 Identities=15% Similarity=0.103 Sum_probs=56.3
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCC-----CeEEEEecccCC--c-----ccccceeEecCCC
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHD-----KKIAVILNEFGE--G-----SAMEKSVSVGDNG 72 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~-----~~~~vi~~~~~~--~-----~~~~~~~~~~~~~ 72 (184)
.++.+|+++||++.+|++++|+|+||||||||++.|+|..++ .+|.|..++..- . .......+++|+.
T Consensus 15 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~ 94 (251)
T PRK14270 15 GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKP 94 (251)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCC
Confidence 446799999999999999999999999999999999997643 567777654221 0 1112344666765
Q ss_pred chhhhhhhhcCcc
Q psy7718 73 NLYEEWLELKNGC 85 (184)
Q Consensus 73 ~l~~~~~~l~~gc 85 (184)
.++. .+..+|.+
T Consensus 95 ~~~~-~tv~enl~ 106 (251)
T PRK14270 95 NPFP-MSIYDNVA 106 (251)
T ss_pred CcCC-CcHHHHHH
Confidence 5544 44444443
No 204
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.49 E-value=8.7e-14 Score=113.42 Aligned_cols=50 Identities=18% Similarity=0.243 Sum_probs=46.1
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEeccc
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEF 56 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~ 56 (184)
+.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~ 69 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGY 69 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCE
Confidence 56999999999999999999999999999999999998888888877653
No 205
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.49 E-value=9.9e-14 Score=113.03 Aligned_cols=51 Identities=24% Similarity=0.285 Sum_probs=44.6
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCC-----CCeEEEEecc
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQH-----DKKIAVILNE 55 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~-----~~~~~vi~~~ 55 (184)
.++.+|+++||++.+|++++|+|+||||||||++.|+|... +.+|.|..++
T Consensus 50 ~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G 105 (285)
T PRK14254 50 GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRG 105 (285)
T ss_pred CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 34679999999999999999999999999999999999864 4678777654
No 206
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.49 E-value=1.4e-13 Score=109.78 Aligned_cols=123 Identities=19% Similarity=0.113 Sum_probs=78.8
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCC-----CeEEEEecccCCc-------ccccceeEecCCC
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHD-----KKIAVILNEFGEG-------SAMEKSVSVGDNG 72 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~-----~~~~vi~~~~~~~-------~~~~~~~~~~~~~ 72 (184)
.++.+|+++||++.+|++++|+|+||||||||++.|+|...+ .+|.|..++..-. .......+++|.+
T Consensus 14 ~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~ 93 (250)
T PRK14262 14 GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKP 93 (250)
T ss_pred CCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCC
Confidence 346799999999999999999999999999999999997652 6777776543210 1112334566765
Q ss_pred chhhhhhhhcCcceeccccc-----chHHHHHHH-------------HH-------------------HcCCCCEEEE-c
Q psy7718 73 NLYEEWLELKNGCLCCSVKD-----NGVKAIENL-------------ML-------------------KRGKFDYILL-E 114 (184)
Q Consensus 73 ~l~~~~~~l~~gci~~~~~~-----~~~~~l~~l-------------l~-------------------~~~~~d~iii-E 114 (184)
.++. .+..+|.++.+...+ .....+.++ .. -..+|+++++ |
T Consensus 94 ~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDE 172 (250)
T PRK14262 94 TPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDE 172 (250)
T ss_pred ccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 5554 455555544321110 000001000 00 0258999999 9
Q ss_pred cCCCCCChhHHHHh
Q psy7718 115 TTGLADPGPIAKVF 128 (184)
Q Consensus 115 ~tg~~dp~~i~~~l 128 (184)
|+...|+....++.
T Consensus 173 P~~~LD~~~~~~l~ 186 (250)
T PRK14262 173 PTSALDPIATQRIE 186 (250)
T ss_pred CccccCHHHHHHHH
Confidence 99999998665543
No 207
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.49 E-value=1.5e-13 Score=107.47 Aligned_cols=50 Identities=24% Similarity=0.279 Sum_probs=45.6
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
+..+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++
T Consensus 13 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g 62 (218)
T cd03290 13 GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSN 62 (218)
T ss_pred CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECC
Confidence 46799999999999999999999999999999999999877788887754
No 208
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.49 E-value=1.5e-13 Score=109.84 Aligned_cols=52 Identities=23% Similarity=0.263 Sum_probs=44.1
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCC--C---CeEEEEecc
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQH--D---KKIAVILNE 55 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~--~---~~~~vi~~~ 55 (184)
+.++.+|+++||++.+|++++|+|+||||||||++.|+|... + ..|.|..++
T Consensus 14 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (252)
T PRK14256 14 FGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDD 70 (252)
T ss_pred eCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECC
Confidence 345679999999999999999999999999999999999854 3 467776654
No 209
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.49 E-value=1.1e-13 Score=114.49 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=45.2
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
..+|++|||++.+|++++|+|+||||||||++.|+|...+.+|.|..++
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g 87 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGD 87 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECC
Confidence 4699999999999999999999999999999999999888888887764
No 210
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.49 E-value=1.8e-13 Score=109.47 Aligned_cols=51 Identities=20% Similarity=0.210 Sum_probs=43.5
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCC--C---CeEEEEecc
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQH--D---KKIAVILNE 55 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~--~---~~~~vi~~~ 55 (184)
.++.+|+++||++.+|++++|+|+||||||||++.|+|... + ..|.|..++
T Consensus 17 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14261 17 GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72 (253)
T ss_pred CCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 45679999999999999999999999999999999998643 2 367777654
No 211
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.49 E-value=1.1e-13 Score=111.05 Aligned_cols=52 Identities=17% Similarity=0.127 Sum_probs=44.2
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCC--C---CeEEEEecc
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQH--D---KKIAVILNE 55 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~--~---~~~~vi~~~ 55 (184)
|.++.+|+++||++.+|++++|+|+||||||||++.|+|... + .+|.|..++
T Consensus 22 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g 78 (259)
T PRK14274 22 YGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG 78 (259)
T ss_pred ECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECC
Confidence 345679999999999999999999999999999999999764 2 467776654
No 212
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.49 E-value=7.4e-14 Score=113.26 Aligned_cols=49 Identities=18% Similarity=0.066 Sum_probs=45.1
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
..+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g 68 (277)
T PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDG 68 (277)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECC
Confidence 3599999999999999999999999999999999999888888887754
No 213
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.48 E-value=9.9e-14 Score=111.93 Aligned_cols=49 Identities=18% Similarity=0.218 Sum_probs=45.0
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
.++|+++||++++|++++|+|+||||||||++.|+|..++.+|.|..++
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g 74 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDD 74 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECC
Confidence 4699999999999999999999999999999999999888888877654
No 214
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.48 E-value=9.7e-14 Score=112.75 Aligned_cols=49 Identities=20% Similarity=0.157 Sum_probs=45.6
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
+.+|+++||++.+|++++|+|+||||||||++.|.|...+.+|.|..++
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g 71 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDG 71 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 5799999999999999999999999999999999999888888887764
No 215
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.48 E-value=1e-13 Score=112.32 Aligned_cols=50 Identities=18% Similarity=0.135 Sum_probs=45.6
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
.+.+++++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++
T Consensus 14 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g 63 (275)
T PRK13639 14 GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKG 63 (275)
T ss_pred CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECC
Confidence 35699999999999999999999999999999999999888888887765
No 216
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.48 E-value=1.8e-13 Score=110.42 Aligned_cols=51 Identities=16% Similarity=0.209 Sum_probs=44.7
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCC-----CCeEEEEecc
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQH-----DKKIAVILNE 55 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~-----~~~~~vi~~~ 55 (184)
.++.+|+++||++.+|++++|+|+||||||||++.|+|... +.+|.|..++
T Consensus 31 ~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 86 (267)
T PRK14237 31 GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRG 86 (267)
T ss_pred CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECC
Confidence 45789999999999999999999999999999999999864 4678777654
No 217
>PLN03211 ABC transporter G-25; Provisional
Probab=99.48 E-value=1.1e-13 Score=124.33 Aligned_cols=83 Identities=17% Similarity=0.192 Sum_probs=60.9
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCC--eEEEEecccCCc-ccccceeEecCCCchhhhhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDK--KIAVILNEFGEG-SAMEKSVSVGDNGNLYEEWLE 80 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~--~~~vi~~~~~~~-~~~~~~~~~~~~~~l~~~~~~ 80 (184)
++++.+|++|||++++|++++|+|+||||||||++.|+|..++. +|.|..|+..-. ....+..++.|+..+++.++.
T Consensus 78 ~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV 157 (659)
T PLN03211 78 IQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTV 157 (659)
T ss_pred CCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCH
Confidence 44678999999999999999999999999999999999986653 788888764321 112234466676665555555
Q ss_pred hcCcce
Q psy7718 81 LKNGCL 86 (184)
Q Consensus 81 l~~gci 86 (184)
.++..+
T Consensus 158 ~E~l~~ 163 (659)
T PLN03211 158 RETLVF 163 (659)
T ss_pred HHHHHH
Confidence 555443
No 218
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.48 E-value=8e-14 Score=113.38 Aligned_cols=121 Identities=15% Similarity=0.127 Sum_probs=75.6
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCe---EEEEecccCCc-----ccccceeEecCCCc-hhhh
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKK---IAVILNEFGEG-----SAMEKSVSVGDNGN-LYEE 77 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~---~~vi~~~~~~~-----~~~~~~~~~~~~~~-l~~~ 77 (184)
+.+|+++||++.+|++++|+|+||||||||++.|+|...+.. |.|..++..-. .......+++|++. .+..
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 99 (282)
T PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVG 99 (282)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhcc
Confidence 469999999999999999999999999999999999876654 67766543211 11122345666542 2333
Q ss_pred hhhhcCcceeccccc----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhH
Q psy7718 78 WLELKNGCLCCSVKD----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPI 124 (184)
Q Consensus 78 ~~~l~~gci~~~~~~----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i 124 (184)
.+..+|.++.....+ .....+.++++. ..+|+++++ ||+...||...
T Consensus 100 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~ 179 (282)
T PRK13640 100 ATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGK 179 (282)
T ss_pred CCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence 344444432111100 000111111110 268999999 99999999865
Q ss_pred HHH
Q psy7718 125 AKV 127 (184)
Q Consensus 125 ~~~ 127 (184)
..+
T Consensus 180 ~~l 182 (282)
T PRK13640 180 EQI 182 (282)
T ss_pred HHH
Confidence 543
No 219
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.48 E-value=1.3e-13 Score=110.62 Aligned_cols=53 Identities=28% Similarity=0.150 Sum_probs=46.9
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEeccc
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEF 56 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~ 56 (184)
+.++.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++.
T Consensus 16 ~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 68 (258)
T PRK11701 16 YGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMR 68 (258)
T ss_pred cCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCc
Confidence 34567999999999999999999999999999999999998888888776553
No 220
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.48 E-value=8.6e-14 Score=115.63 Aligned_cols=49 Identities=20% Similarity=0.092 Sum_probs=45.1
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
..++++|||++.+|++++|+|+||||||||++.|++...+.+|.|..++
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G 82 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLG 82 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECC
Confidence 4699999999999999999999999999999999999888888887754
No 221
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.48 E-value=2.5e-13 Score=105.44 Aligned_cols=119 Identities=14% Similarity=0.078 Sum_probs=77.7
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc-----ccccceeEecCCCchhhhhhhh
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG-----SAMEKSVSVGDNGNLYEEWLEL 81 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~l 81 (184)
+.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..-. .......+++|+..++.. +..
T Consensus 21 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~ 99 (207)
T cd03369 21 PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSG-TIR 99 (207)
T ss_pred cccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCc-cHH
Confidence 47999999999999999999999999999999999998888888877543210 111223355665544332 333
Q ss_pred cCcceecccc------------------c-c-hHHHHHHHHHHcCCCCEEEE-ccCCCCCChhHHHHh
Q psy7718 82 KNGCLCCSVK------------------D-N-GVKAIENLMLKRGKFDYILL-ETTGLADPGPIAKVF 128 (184)
Q Consensus 82 ~~gci~~~~~------------------~-~-~~~~l~~ll~~~~~~d~iii-E~tg~~dp~~i~~~l 128 (184)
+|....+... + . ..-.+.+.+ ..+|+++++ ||+...||.....+.
T Consensus 100 ~~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral--~~~p~llllDEP~~~LD~~~~~~l~ 165 (207)
T cd03369 100 SNLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARAL--LKRPRVLVLDEATASIDYATDALIQ 165 (207)
T ss_pred HHhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHH--hhCCCEEEEeCCcccCCHHHHHHHH
Confidence 3332211110 0 0 011233333 258999999 999999998765543
No 222
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.48 E-value=9.7e-14 Score=113.20 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=44.3
Q ss_pred CCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 8 EVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 8 ~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 72 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGD 72 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 599999999999999999999999999999999999888888887654
No 223
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.48 E-value=3e-13 Score=106.93 Aligned_cols=50 Identities=18% Similarity=0.217 Sum_probs=45.8
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
++.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++
T Consensus 13 ~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g 62 (236)
T cd03253 13 GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDG 62 (236)
T ss_pred CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECC
Confidence 35699999999999999999999999999999999999888888887754
No 224
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.48 E-value=2.2e-13 Score=110.40 Aligned_cols=52 Identities=15% Similarity=0.086 Sum_probs=43.3
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCC-----CeEEEEecc
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHD-----KKIAVILNE 55 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~-----~~~~vi~~~ 55 (184)
+.++.+|+++||++.+|++++|+|+||||||||++.|+|...+ .+|.|..++
T Consensus 30 ~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 86 (274)
T PRK14265 30 YGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRD 86 (274)
T ss_pred eCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECC
Confidence 3446799999999999999999999999999999999997532 356666544
No 225
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.48 E-value=1.9e-13 Score=108.99 Aligned_cols=51 Identities=18% Similarity=0.222 Sum_probs=44.2
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCC-----CeEEEEecc
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHD-----KKIAVILNE 55 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~-----~~~~vi~~~ 55 (184)
.++.+|+++||++.+|++++|+|+||||||||++.|+|..++ .+|.|..++
T Consensus 14 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (249)
T PRK14253 14 GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDG 69 (249)
T ss_pred CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 456799999999999999999999999999999999998654 467777654
No 226
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.47 E-value=2.3e-13 Score=108.71 Aligned_cols=47 Identities=21% Similarity=0.191 Sum_probs=41.7
Q ss_pred CCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 8 EVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 8 ~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
.+|+++||++.+|++++|+|+||||||||++.|+|..++ +|.|..++
T Consensus 10 ~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g 56 (248)
T PRK03695 10 TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAG 56 (248)
T ss_pred ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECC
Confidence 379999999999999999999999999999999998644 67777654
No 227
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.47 E-value=1.7e-13 Score=109.47 Aligned_cols=52 Identities=15% Similarity=0.200 Sum_probs=44.8
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCC-----CCeEEEEecc
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQH-----DKKIAVILNE 55 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~-----~~~~~vi~~~ 55 (184)
+.++.+|+++||++.+|++++|+|+||||||||++.|+|... +.+|.|..++
T Consensus 14 ~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g 70 (251)
T PRK14251 14 YGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70 (251)
T ss_pred ECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECC
Confidence 345679999999999999999999999999999999999864 3577777654
No 228
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.47 E-value=2e-13 Score=110.37 Aligned_cols=123 Identities=17% Similarity=0.135 Sum_probs=78.2
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCC-----CCeEEEEecccCC--c-----ccccceeEecCCC
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQH-----DKKIAVILNEFGE--G-----SAMEKSVSVGDNG 72 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~-----~~~~~vi~~~~~~--~-----~~~~~~~~~~~~~ 72 (184)
.++.+|+++||++.+|++++|+|+||||||||++.|+|... +..|.|..++..- . .......+++|+.
T Consensus 35 ~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 114 (271)
T PRK14238 35 GEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKP 114 (271)
T ss_pred CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCC
Confidence 45679999999999999999999999999999999999865 4677777654211 0 1112334566765
Q ss_pred chhhhhhhhcCcceeccccc--c--h-HHHHHH-------------HHHH-------------------cCCCCEEEE-c
Q psy7718 73 NLYEEWLELKNGCLCCSVKD--N--G-VKAIEN-------------LMLK-------------------RGKFDYILL-E 114 (184)
Q Consensus 73 ~l~~~~~~l~~gci~~~~~~--~--~-~~~l~~-------------ll~~-------------------~~~~d~iii-E 114 (184)
.++.. +..+|..+.+...+ . . ...+.+ .+.+ ..+|+++++ |
T Consensus 115 ~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDE 193 (271)
T PRK14238 115 NPFPK-SIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDE 193 (271)
T ss_pred ccccc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 54432 44444433221100 0 0 011111 0000 158999999 9
Q ss_pred cCCCCCChhHHHHh
Q psy7718 115 TTGLADPGPIAKVF 128 (184)
Q Consensus 115 ~tg~~dp~~i~~~l 128 (184)
|+...||....++.
T Consensus 194 Pt~~LD~~~~~~l~ 207 (271)
T PRK14238 194 PTSALDPISTLKVE 207 (271)
T ss_pred CCCcCCHHHHHHHH
Confidence 99999998766654
No 229
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.47 E-value=6.5e-14 Score=136.74 Aligned_cols=122 Identities=16% Similarity=0.052 Sum_probs=88.0
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc----ccccceeEecCCCchhhhhhhhc
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG----SAMEKSVSVGDNGNLYEEWLELK 82 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~l~~~~~~l~ 82 (184)
+.+|++|||++++|++++|+|+||||||||+|+|+|...+.+|.|..++..-. .......+++|...+++.++..+
T Consensus 1952 ~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E 2031 (2272)
T TIGR01257 1952 SPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGRE 2031 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHH
Confidence 57999999999999999999999999999999999998888898887654321 11223456788877777777777
Q ss_pred Ccceecccccc----hHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHHHHh
Q psy7718 83 NGCLCCSVKDN----GVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIAKVF 128 (184)
Q Consensus 83 ~gci~~~~~~~----~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~~~l 128 (184)
+..+.+.+++. ....+.+++++ ..+|+++++ ||+.+.||.....+.
T Consensus 2032 ~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~ 2110 (2272)
T TIGR01257 2032 HLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLW 2110 (2272)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHH
Confidence 76554433221 11111222211 268999999 999999998766544
No 230
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.47 E-value=2.4e-13 Score=109.55 Aligned_cols=51 Identities=18% Similarity=0.135 Sum_probs=43.5
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCC-----CCeEEEEecc
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQH-----DKKIAVILNE 55 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~-----~~~~~vi~~~ 55 (184)
.++.+|+++||++.+|++++|+|+||||||||++.|++... +.+|.|..++
T Consensus 21 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 76 (264)
T PRK14243 21 GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHG 76 (264)
T ss_pred CCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECC
Confidence 44579999999999999999999999999999999998743 2567776654
No 231
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.47 E-value=6.4e-14 Score=122.75 Aligned_cols=51 Identities=22% Similarity=0.207 Sum_probs=45.3
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcC--CCCeEEEEec
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQ--HDKKIAVILN 54 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~--~~~~~~vi~~ 54 (184)
|+++.+|+++||++.+|++++|+|+||||||||++.|+|.. .+.+|.|..+
T Consensus 10 ~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~ 62 (520)
T TIGR03269 10 FDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYH 62 (520)
T ss_pred ECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEe
Confidence 44567999999999999999999999999999999999985 5778887664
No 232
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.46 E-value=1.9e-13 Score=109.79 Aligned_cols=51 Identities=20% Similarity=0.158 Sum_probs=43.7
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCC-----CeEEEEecc
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHD-----KKIAVILNE 55 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~-----~~~~vi~~~ 55 (184)
.+..+|+++||++.+|++++|+|+||||||||++.|+|..++ .+|.|..++
T Consensus 18 ~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g 73 (259)
T PRK14260 18 NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFG 73 (259)
T ss_pred CCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECC
Confidence 446799999999999999999999999999999999997653 367776654
No 233
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.46 E-value=1.3e-13 Score=111.31 Aligned_cols=51 Identities=20% Similarity=0.184 Sum_probs=46.0
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEeccc
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEF 56 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~ 56 (184)
++.+|+++||++.+|++++|+|+||||||||++.|+|...+.+|.|..++.
T Consensus 24 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~ 74 (268)
T PRK10419 24 HQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGE 74 (268)
T ss_pred ceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE
Confidence 467999999999999999999999999999999999988888888776543
No 234
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.46 E-value=2e-13 Score=109.09 Aligned_cols=51 Identities=18% Similarity=0.178 Sum_probs=43.9
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCC-----CCeEEEEecc
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQH-----DKKIAVILNE 55 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~-----~~~~~vi~~~ 55 (184)
.++.+|+++||++.+|++++|+|+||||||||++.|+|... +..|.|..++
T Consensus 16 ~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 71 (251)
T PRK14244 16 GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDG 71 (251)
T ss_pred CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECC
Confidence 34679999999999999999999999999999999999754 3577777654
No 235
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.46 E-value=2.4e-13 Score=110.01 Aligned_cols=51 Identities=22% Similarity=0.206 Sum_probs=44.2
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCC-----CCeEEEEecc
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQH-----DKKIAVILNE 55 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~-----~~~~~vi~~~ 55 (184)
.++.+|+++||++.+|++++|+|+||||||||++.|+|... +.+|.|..++
T Consensus 36 ~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g 91 (272)
T PRK14236 36 GDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDG 91 (272)
T ss_pred CCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECC
Confidence 34679999999999999999999999999999999999865 3577777654
No 236
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.46 E-value=2.5e-13 Score=110.15 Aligned_cols=52 Identities=27% Similarity=0.266 Sum_probs=45.0
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCC-----CeEEEEecc
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHD-----KKIAVILNE 55 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~-----~~~~vi~~~ 55 (184)
+.++.+|+++||++.+|++++|+|+||||||||++.|+|..++ .+|.|..++
T Consensus 31 ~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 87 (276)
T PRK14271 31 FAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87 (276)
T ss_pred ECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC
Confidence 3456799999999999999999999999999999999998654 577777654
No 237
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.46 E-value=2.5e-13 Score=108.56 Aligned_cols=51 Identities=24% Similarity=0.160 Sum_probs=46.2
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
.+..+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++
T Consensus 14 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 64 (253)
T TIGR02323 14 GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIM 64 (253)
T ss_pred CCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEec
Confidence 346789999999999999999999999999999999999888888887764
No 238
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.46 E-value=3.7e-13 Score=108.40 Aligned_cols=51 Identities=20% Similarity=0.204 Sum_probs=43.8
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCC-----CeEEEEecc
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHD-----KKIAVILNE 55 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~-----~~~~vi~~~ 55 (184)
.++.+|+++||++++|++++|+|+||||||||++.|+|...+ .+|.|..++
T Consensus 27 ~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g 82 (265)
T PRK14252 27 GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHP 82 (265)
T ss_pred CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcC
Confidence 345799999999999999999999999999999999997643 567776643
No 239
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.46 E-value=2.1e-13 Score=113.19 Aligned_cols=49 Identities=18% Similarity=0.150 Sum_probs=44.9
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
..+|++|||++.+|++++|+|+||||||||++.|++...+.+|.|..++
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g 76 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQG 76 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECC
Confidence 4699999999999999999999999999999999999888788887754
No 240
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.46 E-value=2.7e-13 Score=119.72 Aligned_cols=49 Identities=18% Similarity=0.180 Sum_probs=44.9
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEec
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILN 54 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~ 54 (184)
++.+|+++||++.+|++++|+|+||||||||++.|+|...+..|.|..+
T Consensus 19 ~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~ 67 (556)
T PRK11819 19 KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPA 67 (556)
T ss_pred CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEec
Confidence 5789999999999999999999999999999999999988877877654
No 241
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.45 E-value=4e-13 Score=117.35 Aligned_cols=50 Identities=28% Similarity=0.262 Sum_probs=45.0
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEe
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVIL 53 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~ 53 (184)
+.++.+|+++||++.+|..+||+|.||+|||||++.|.|...+..|.|..
T Consensus 13 ~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~ 62 (530)
T COG0488 13 YGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTR 62 (530)
T ss_pred eCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEee
Confidence 56789999999999999999999999999999999999987776666554
No 242
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.45 E-value=2.4e-13 Score=108.58 Aligned_cols=52 Identities=23% Similarity=0.312 Sum_probs=43.4
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcC--CC---CeEEEEecc
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQ--HD---KKIAVILNE 55 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~--~~---~~~~vi~~~ 55 (184)
+.++.+|+++||++.+|++++|+|+||||||||++.|.|.. .+ .+|.|..++
T Consensus 15 ~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g 71 (252)
T PRK14239 15 YNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNG 71 (252)
T ss_pred ECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECC
Confidence 34567999999999999999999999999999999999863 34 367776654
No 243
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.45 E-value=2.2e-13 Score=98.75 Aligned_cols=46 Identities=26% Similarity=0.346 Sum_probs=42.8
Q ss_pred CccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 10 PDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 10 l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
|++|||++.+|++++|+|+||||||||++.|++...+.++.|..++
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~ 46 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILING 46 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETT
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccc
Confidence 6899999999999999999999999999999999888888887764
No 244
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.45 E-value=2.8e-13 Score=118.43 Aligned_cols=48 Identities=17% Similarity=0.217 Sum_probs=44.2
Q ss_pred CCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 8 EVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 8 ~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++
T Consensus 277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g 324 (510)
T PRK09700 277 KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNG 324 (510)
T ss_pred CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECC
Confidence 489999999999999999999999999999999999888888887754
No 245
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.45 E-value=3.1e-13 Score=108.99 Aligned_cols=51 Identities=24% Similarity=0.059 Sum_probs=45.4
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
....+|+++||++++|++++|+|+||||||||++.|+|..++.+|.|..++
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g 85 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG 85 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECC
Confidence 345699999999999999999999999999999999999888888776654
No 246
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.45 E-value=3.3e-13 Score=100.41 Aligned_cols=105 Identities=22% Similarity=0.243 Sum_probs=72.4
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcc-----cccceeEecCCCchhhhhh
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGS-----AMEKSVSVGDNGNLYEEWL 79 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~-----~~~~~~~~~~~~~l~~~~~ 79 (184)
.+..++++++|++.++++++|+|+||||||||++.|.+...+..+.+..++..-.. ......+++|
T Consensus 10 ~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q--------- 80 (157)
T cd00267 10 GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ--------- 80 (157)
T ss_pred CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee---------
Confidence 34579999999999999999999999999999999999887777877765432111 0011112222
Q ss_pred hhcCcceecccccchHHHHHHHHHHcCCCCEEEE-ccCCCCCChhHHHHh
Q psy7718 80 ELKNGCLCCSVKDNGVKAIENLMLKRGKFDYILL-ETTGLADPGPIAKVF 128 (184)
Q Consensus 80 ~l~~gci~~~~~~~~~~~l~~ll~~~~~~d~iii-E~tg~~dp~~i~~~l 128 (184)
++.| +...-.+.+.+. .+|+++++ ||+...|+....++.
T Consensus 81 -lS~G-------~~~r~~l~~~l~--~~~~i~ilDEp~~~lD~~~~~~l~ 120 (157)
T cd00267 81 -LSGG-------QRQRVALARALL--LNPDLLLLDEPTSGLDPASRERLL 120 (157)
T ss_pred -CCHH-------HHHHHHHHHHHh--cCCCEEEEeCCCcCCCHHHHHHHH
Confidence 2222 222234555543 47999999 999999988765543
No 247
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.45 E-value=3e-13 Score=108.02 Aligned_cols=49 Identities=18% Similarity=0.158 Sum_probs=41.7
Q ss_pred CCCCccccceec-----CccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 7 SEVPDLVPAELQ-----PVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 7 ~~~l~~v~l~v~-----~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
...+++++|++. +|++++|+|+||||||||++.|++..++.+|.|..++
T Consensus 7 ~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g 60 (246)
T cd03237 7 KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIEL 60 (246)
T ss_pred ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECC
Confidence 457888888886 6899999999999999999999999888777776543
No 248
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.44 E-value=3.9e-13 Score=102.26 Aligned_cols=120 Identities=13% Similarity=0.071 Sum_probs=67.0
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcccccceeEecCCCchhhhhhhhcC
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLELKN 83 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 83 (184)
+...++|+++||++++|++++|+|+||||||||++.++. .++.+..+.........+..++.|. .+...+ .+..
T Consensus 5 ~~~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~~~~~~~~~~~~q~-~~l~~~-~L~~ 78 (176)
T cd03238 5 GANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLPKFSRNKLIFIDQL-QFLIDV-GLGY 78 (176)
T ss_pred ceeeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCcccccccccEEEEhHH-HHHHHc-CCCc
Confidence 345679999999999999999999999999999999864 2233333221110001112233331 011111 1100
Q ss_pred cc---eeccccc--chHHHHHHHHHHcCCCCEEEE-ccCCCCCChhHHHHhh
Q psy7718 84 GC---LCCSVKD--NGVKAIENLMLKRGKFDYILL-ETTGLADPGPIAKVFW 129 (184)
Q Consensus 84 gc---i~~~~~~--~~~~~l~~ll~~~~~~d~iii-E~tg~~dp~~i~~~l~ 129 (184)
.. ....+.+ ...-.+.+.+...++|+++++ ||+...||.....++.
T Consensus 79 ~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~ 130 (176)
T cd03238 79 LTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLE 130 (176)
T ss_pred cccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHH
Confidence 00 0011111 112345554433223999999 9999999987665543
No 249
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.44 E-value=2.5e-13 Score=109.23 Aligned_cols=51 Identities=24% Similarity=0.241 Sum_probs=43.2
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCC-----eEEEEecc
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDK-----KIAVILNE 55 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~-----~~~vi~~~ 55 (184)
.+..+|+++||++.+|++++|+|+||||||||++.|+|..++. .+.|..++
T Consensus 18 ~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g 73 (261)
T PRK14258 18 DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN 73 (261)
T ss_pred CCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC
Confidence 3457999999999999999999999999999999999987653 55565543
No 250
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.44 E-value=3.6e-13 Score=118.30 Aligned_cols=52 Identities=25% Similarity=0.180 Sum_probs=46.2
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
|+++.+|+++||++.+|++++|+|+||||||||++.|+|..+|.+|.|..++
T Consensus 329 ~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~ 380 (530)
T PRK15064 329 FDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE 380 (530)
T ss_pred eCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC
Confidence 4456799999999999999999999999999999999999888888876543
No 251
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.44 E-value=4.2e-13 Score=109.38 Aligned_cols=51 Identities=27% Similarity=0.302 Sum_probs=43.9
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCC-----CCeEEEEecc
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQH-----DKKIAVILNE 55 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~-----~~~~~vi~~~ 55 (184)
.++.+|+++||++.+|++++|+|+||||||||++.|+|... +..|.|..++
T Consensus 50 ~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g 105 (286)
T PRK14275 50 GEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDG 105 (286)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECC
Confidence 34569999999999999999999999999999999999643 3678777754
No 252
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.44 E-value=8e-14 Score=110.96 Aligned_cols=52 Identities=21% Similarity=0.109 Sum_probs=46.9
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCC
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGE 58 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~ 58 (184)
.+++.||||++++|++++++|+|||||||+||+|.|...|..|.|.++++..
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~P 88 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDP 88 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCc
Confidence 4589999999999999999999999999999999999888888888876543
No 253
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.44 E-value=2.3e-13 Score=112.90 Aligned_cols=49 Identities=18% Similarity=0.078 Sum_probs=42.9
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCC----CCeEEEEecc
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQH----DKKIAVILNE 55 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~----~~~~~vi~~~ 55 (184)
..+|+||||++.+|++++|+|+||||||||++.|++... +.+|.|..++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G 72 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNG 72 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECC
Confidence 359999999999999999999999999999999999865 2567777654
No 254
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.44 E-value=1.5e-13 Score=106.88 Aligned_cols=95 Identities=24% Similarity=0.328 Sum_probs=65.6
Q ss_pred CccEEEEEecCCChHHHHHHHHHhcC-CCCeEEEEecccCCcccccceeEecCCCchhhhhhhhcCcceecccccchHHH
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTEQ-HDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLELKNGCLCCSVKDNGVKA 97 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~~-~~~~~~vi~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~gci~~~~~~~~~~~ 97 (184)
..++++|+||+|||||||+++++... ...+++++.+++.. .++... +.+.+ ..+.++.+||+||....+....
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~-~~D~~~--~~~~~---~~~~~l~~gcic~~~~~~~~~~ 94 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVIT-KFDAER--LRKYG---APAIQINTGKECHLDAHMVAHA 94 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCC-cccHHH--HHHcC---CcEEEEcCCCcccCChHHHHHH
Confidence 47899999999999999999999763 34688999988752 222211 11222 2467899999999654443344
Q ss_pred HHHHHHHcCCCCEEEEccCC-CCCC
Q psy7718 98 IENLMLKRGKFDYILLETTG-LADP 121 (184)
Q Consensus 98 l~~ll~~~~~~d~iiiE~tg-~~dp 121 (184)
+.++. ..++|+|++|++| +..|
T Consensus 95 l~~~~--~~~~d~IiIEt~G~l~~~ 117 (207)
T TIGR00073 95 LEDLP--LDDIDLLFIENVGNLVCP 117 (207)
T ss_pred HHHhc--cCCCCEEEEecCCCcCCC
Confidence 44432 2378999999999 4444
No 255
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.44 E-value=4.5e-13 Score=106.94 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=42.8
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhc---CCC--CeEEEEecc
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTE---QHD--KKIAVILNE 55 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~---~~~--~~~~vi~~~ 55 (184)
.++.+|+++||++.+|++++|+|+||||||||++.|+|. .++ .+|.|..++
T Consensus 14 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 69 (250)
T PRK14245 14 GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDG 69 (250)
T ss_pred CCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECC
Confidence 346799999999999999999999999999999999985 233 367776654
No 256
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.44 E-value=4.9e-13 Score=116.38 Aligned_cols=51 Identities=20% Similarity=0.066 Sum_probs=45.6
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEec
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILN 54 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~ 54 (184)
|.++.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..+
T Consensus 13 ~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~ 63 (490)
T PRK10938 13 LSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQ 63 (490)
T ss_pred cCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEEC
Confidence 445679999999999999999999999999999999999988877877654
No 257
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.44 E-value=5.5e-13 Score=107.89 Aligned_cols=50 Identities=12% Similarity=0.093 Sum_probs=45.6
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
++.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++
T Consensus 19 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 68 (272)
T PRK15056 19 GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILG 68 (272)
T ss_pred CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 46799999999999999999999999999999999999888888877654
No 258
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.44 E-value=5.6e-13 Score=106.37 Aligned_cols=80 Identities=18% Similarity=0.162 Sum_probs=55.8
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCC-----CCeEEEEecccCCc-------ccccceeEecCCC
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQH-----DKKIAVILNEFGEG-------SAMEKSVSVGDNG 72 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~-----~~~~~vi~~~~~~~-------~~~~~~~~~~~~~ 72 (184)
.++.+|+++||++.+|++++|+|+||||||||++.|+|... +.+|.|..++..-. .......+++|..
T Consensus 14 ~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~ 93 (250)
T PRK14266 14 DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKP 93 (250)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCC
Confidence 34679999999999999999999999999999999998642 25677776553210 1112344566665
Q ss_pred chhhhhhhhcCcc
Q psy7718 73 NLYEEWLELKNGC 85 (184)
Q Consensus 73 ~l~~~~~~l~~gc 85 (184)
.++.. +..+|.+
T Consensus 94 ~~~~~-t~~~nl~ 105 (250)
T PRK14266 94 NPFPK-SIFDNVA 105 (250)
T ss_pred ccCcc-hHHHHHH
Confidence 55543 4455544
No 259
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.44 E-value=4.7e-13 Score=118.82 Aligned_cols=121 Identities=21% Similarity=0.132 Sum_probs=81.3
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc-----ccccceeEecCCCchhhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG-----SAMEKSVSVGDNGNLYEEW 78 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~l~~~~ 78 (184)
++++++|+++||++++|+.++|+|++|||||||++.|++.. |.+|.|..++..-. ...+...+++|++.++..
T Consensus 360 ~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~- 437 (588)
T PRK11174 360 PDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHG- 437 (588)
T ss_pred cCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCc-
Confidence 34578999999999999999999999999999999999998 88888888653221 112233466777655543
Q ss_pred hhhcCcceecc-cc-cchH-------------------------------------HHHHHHHHHcCCCCEEEE-ccCCC
Q psy7718 79 LELKNGCLCCS-VK-DNGV-------------------------------------KAIENLMLKRGKFDYILL-ETTGL 118 (184)
Q Consensus 79 ~~l~~gci~~~-~~-~~~~-------------------------------------~~l~~ll~~~~~~d~iii-E~tg~ 118 (184)
+-.+|.++.+. .. ++.. -.|+|.+ ..+|+++++ |||..
T Consensus 438 TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAl--l~~~~IliLDE~TSa 515 (588)
T PRK11174 438 TLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARAL--LQPCQLLLLDEPTAS 515 (588)
T ss_pred CHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHH--hcCCCEEEEeCCccC
Confidence 23455444321 10 0000 1222222 157999999 99999
Q ss_pred CCChhHHHHh
Q psy7718 119 ADPGPIAKVF 128 (184)
Q Consensus 119 ~dp~~i~~~l 128 (184)
.|++.-..++
T Consensus 516 LD~~te~~i~ 525 (588)
T PRK11174 516 LDAHSEQLVM 525 (588)
T ss_pred CCHHHHHHHH
Confidence 9997654443
No 260
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.44 E-value=2.4e-13 Score=121.55 Aligned_cols=49 Identities=22% Similarity=0.234 Sum_probs=45.0
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
..+|++|||++.+|++++|+|+||||||||++.|+|..++.+|.|..++
T Consensus 337 ~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g 385 (623)
T PRK10261 337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNG 385 (623)
T ss_pred eEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECC
Confidence 4699999999999999999999999999999999999888888887754
No 261
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.44 E-value=3.7e-13 Score=131.59 Aligned_cols=123 Identities=16% Similarity=0.151 Sum_probs=87.7
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc----ccccceeEecCCCchhhhhhhh
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG----SAMEKSVSVGDNGNLYEEWLEL 81 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~l~~~~~~l 81 (184)
++.+++++||++.+|++++|+|+||||||||+++|+|..+|.+|.|..++..-. ........++|...+++.++..
T Consensus 942 ~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~ 1021 (2272)
T TIGR01257 942 GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVA 1021 (2272)
T ss_pred CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHH
Confidence 467999999999999999999999999999999999998888898887653211 1112344677777677777777
Q ss_pred cCcceecccccc----hHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHHHHh
Q psy7718 82 KNGCLCCSVKDN----GVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIAKVF 128 (184)
Q Consensus 82 ~~gci~~~~~~~----~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~~~l 128 (184)
+|..+.+.+++. ....+.+++++ ..+|+++++ |||.+.||.....+.
T Consensus 1022 E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~ 1101 (2272)
T TIGR01257 1022 EHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIW 1101 (2272)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHH
Confidence 776554433221 11122222221 168999999 999999998766543
No 262
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.43 E-value=5.7e-13 Score=119.40 Aligned_cols=50 Identities=22% Similarity=0.208 Sum_probs=45.0
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEe
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVIL 53 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~ 53 (184)
|+++.+|+++||++.+|++++|+|+||||||||++.|+|..+|.+|.|..
T Consensus 329 ~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~ 378 (635)
T PRK11147 329 IDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC 378 (635)
T ss_pred ECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE
Confidence 44567999999999999999999999999999999999988887777765
No 263
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.43 E-value=3.4e-13 Score=112.04 Aligned_cols=49 Identities=14% Similarity=0.051 Sum_probs=44.0
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCC---eEEEEecc
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDK---KIAVILNE 55 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~---~~~vi~~~ 55 (184)
..+|++|||++.+|++++|+|+||||||||++.|++...+. +|.|..++
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G 80 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNG 80 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECC
Confidence 46999999999999999999999999999999999987664 78787754
No 264
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.43 E-value=9.3e-13 Score=116.24 Aligned_cols=49 Identities=20% Similarity=0.190 Sum_probs=44.9
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEec
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILN 54 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~ 54 (184)
++.+|+++||++.+|++++|+|+||||||||++.|+|...|.+|.|..+
T Consensus 17 ~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~ 65 (552)
T TIGR03719 17 KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPA 65 (552)
T ss_pred CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEec
Confidence 5679999999999999999999999999999999999988888877664
No 265
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.43 E-value=4.2e-13 Score=117.86 Aligned_cols=51 Identities=14% Similarity=0.098 Sum_probs=45.9
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEec
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILN 54 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~ 54 (184)
+.++++|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..+
T Consensus 11 ~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~ 61 (530)
T PRK15064 11 FGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLD 61 (530)
T ss_pred eCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEec
Confidence 445679999999999999999999999999999999999888877877664
No 266
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.43 E-value=5.6e-13 Score=116.93 Aligned_cols=70 Identities=23% Similarity=0.261 Sum_probs=54.2
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc----ccccceeEecCCCchhh
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG----SAMEKSVSVGDNGNLYE 76 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~l~~ 76 (184)
+++|+|+||++++|+.++|+|++|||||||++.|+|..+|.+|.|..++..-. ........++|++.++.
T Consensus 348 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~ 421 (529)
T TIGR02868 348 PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFD 421 (529)
T ss_pred CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCccccc
Confidence 56999999999999999999999999999999999999999999888653211 11122335666655443
No 267
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.43 E-value=3.3e-13 Score=120.69 Aligned_cols=49 Identities=16% Similarity=0.062 Sum_probs=44.1
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
..+|++|||++.+|++++|+|+||||||||++.|+|...+.+|.|..++
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g 77 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDK 77 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECC
Confidence 4699999999999999999999999999999999999877777776543
No 268
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.43 E-value=4.6e-13 Score=105.71 Aligned_cols=47 Identities=19% Similarity=0.150 Sum_probs=42.7
Q ss_pred CCccccceecCccEEEEEecCCChHHHHHHHHHhcCCC----CeEEEEecc
Q psy7718 9 VPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHD----KKIAVILNE 55 (184)
Q Consensus 9 ~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~----~~~~vi~~~ 55 (184)
+++++||++.+|++++|+|+||||||||++.|+|..++ .+|.|..++
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g 51 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDG 51 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECC
Confidence 58999999999999999999999999999999998877 678877654
No 269
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.43 E-value=1.6e-13 Score=111.31 Aligned_cols=99 Identities=20% Similarity=0.179 Sum_probs=73.4
Q ss_pred ecCccEEEEEecCCChHHHHHHHHHhcCC-CCeEEEEecccCCcccccceeEecCCCchhhhhhhhcCcceecccccchH
Q psy7718 17 LQPVPVTIITGYLGAGKTTLLNYILTEQH-DKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLELKNGCLCCSVKDNGV 95 (184)
Q Consensus 17 v~~~~vi~i~G~~GsGKTTll~~L~~~~~-~~~~~vi~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~gci~~~~~~~~~ 95 (184)
-..+.++.|+|++|||||||++.+++... ..+..|+.++++... +.+.+. ..+ ....++.+||+||.....+.
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~-Da~rI~--~~g---~pvvqi~tG~~Chl~a~mv~ 174 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVN-DAARIR--ATG---TPAIQVNTGKGCHLDAQMIA 174 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHH-HHHHHH--hcC---CcEEEecCCCCCcCcHHHHH
Confidence 35688999999999999999999998653 356788888877643 333322 111 13567899999998877777
Q ss_pred HHHHHHHHHcCCCCEEEEccCCC-CCChh
Q psy7718 96 KAIENLMLKRGKFDYILLETTGL-ADPGP 123 (184)
Q Consensus 96 ~~l~~ll~~~~~~d~iiiE~tg~-~dp~~ 123 (184)
.++..+. ..+.|+++||.+|. ..|..
T Consensus 175 ~Al~~L~--~~~~d~liIEnvGnLvcPa~ 201 (290)
T PRK10463 175 DAAPRLP--LDDNGILFIENVGNLVCPAS 201 (290)
T ss_pred HHHHHHh--hcCCcEEEEECCCCccCCCc
Confidence 7777763 35679999999996 57763
No 270
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.42 E-value=9e-13 Score=104.95 Aligned_cols=52 Identities=23% Similarity=0.219 Sum_probs=45.6
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcC--CCCeEEEEecc
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQ--HDKKIAVILNE 55 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~--~~~~~~vi~~~ 55 (184)
+.++.+|+++||++++|++++|+|+||||||||++.|++.. ++.+|.|..++
T Consensus 11 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g 64 (248)
T PRK09580 11 VEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG 64 (248)
T ss_pred eCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECC
Confidence 34567999999999999999999999999999999999984 57778877654
No 271
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.42 E-value=7e-13 Score=119.73 Aligned_cols=120 Identities=22% Similarity=0.174 Sum_probs=80.4
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc-----ccccceeEecCCCchhhhhhh
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG-----SAMEKSVSVGDNGNLYEEWLE 80 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~ 80 (184)
++++|+++||++++|+.++|+|++|||||||++.|+|...|.+|.|..++..-. .......++.|++.++.. +.
T Consensus 465 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI 543 (686)
T TIGR03797 465 GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG-SI 543 (686)
T ss_pred CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcc-cH
Confidence 467999999999999999999999999999999999999999999988754321 122233456666554432 22
Q ss_pred hcCcceecccc------------------------------------cch--HHHHHHHHHHcCCCCEEEE-ccCCCCCC
Q psy7718 81 LKNGCLCCSVK------------------------------------DNG--VKAIENLMLKRGKFDYILL-ETTGLADP 121 (184)
Q Consensus 81 l~~gci~~~~~------------------------------------~~~--~~~l~~ll~~~~~~d~iii-E~tg~~dp 121 (184)
.+|.++..... +.. +-.|+|.+ ..+|+++++ |||...||
T Consensus 544 ~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAl--l~~p~iLiLDEpTS~LD~ 621 (686)
T TIGR03797 544 FENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARAL--VRKPRILLFDEATSALDN 621 (686)
T ss_pred HHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH--hcCCCEEEEeCCccCCCH
Confidence 33333321100 000 11223332 258999999 99999999
Q ss_pred hhHHHHh
Q psy7718 122 GPIAKVF 128 (184)
Q Consensus 122 ~~i~~~l 128 (184)
..-.+++
T Consensus 622 ~te~~i~ 628 (686)
T TIGR03797 622 RTQAIVS 628 (686)
T ss_pred HHHHHHH
Confidence 8655543
No 272
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.42 E-value=2.2e-12 Score=104.61 Aligned_cols=78 Identities=15% Similarity=0.095 Sum_probs=57.4
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc-----ccccceeEecCCCchhhhhhh
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG-----SAMEKSVSVGDNGNLYEEWLE 80 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~ 80 (184)
+..+|+++||++.+|++++|+|+||||||||++.|.+... ..|.|..++..-. .......+++|++.+++. +.
T Consensus 16 ~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~-tv 93 (275)
T cd03289 16 GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSG-TF 93 (275)
T ss_pred CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchh-hH
Confidence 4679999999999999999999999999999999999876 5677777653211 111234466777766543 45
Q ss_pred hcCcc
Q psy7718 81 LKNGC 85 (184)
Q Consensus 81 l~~gc 85 (184)
.+|.+
T Consensus 94 ~~nl~ 98 (275)
T cd03289 94 RKNLD 98 (275)
T ss_pred HHHhh
Confidence 55554
No 273
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.42 E-value=4.7e-13 Score=111.20 Aligned_cols=49 Identities=16% Similarity=0.160 Sum_probs=43.3
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCC----CCeEEEEecc
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQH----DKKIAVILNE 55 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~----~~~~~vi~~~ 55 (184)
..+|++|||++.+|++++|+|+||||||||++.|++..+ +..|.|..++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g 72 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDD 72 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECC
Confidence 469999999999999999999999999999999999864 4567777654
No 274
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=4e-13 Score=101.72 Aligned_cols=88 Identities=19% Similarity=0.113 Sum_probs=65.6
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCccc----ccceeEecCCCchhhhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSA----MEKSVSVGDNGNLYEEWL 79 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~~----~~~~~~~~~~~~l~~~~~ 79 (184)
.+++.+|.++||++.+|+.+.|+|+||||||||+|+|+|..+|..|.|..++...... .....++.....+..+++
T Consensus 12 R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLT 91 (209)
T COG4133 12 RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELT 91 (209)
T ss_pred cCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhh
Confidence 3567899999999999999999999999999999999999999989888764432221 122234444455556677
Q ss_pred hhcCcceecccc
Q psy7718 80 ELKNGCLCCSVK 91 (184)
Q Consensus 80 ~l~~gci~~~~~ 91 (184)
+++|.-+.+.+.
T Consensus 92 a~ENL~F~~~~~ 103 (209)
T COG4133 92 ALENLHFWQRFH 103 (209)
T ss_pred HHHHHHHHHHHh
Confidence 777776655443
No 275
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.42 E-value=7.9e-13 Score=117.48 Aligned_cols=119 Identities=16% Similarity=0.157 Sum_probs=80.5
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc-----ccccceeEecCCCchhhhhhh
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG-----SAMEKSVSVGDNGNLYEEWLE 80 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~ 80 (184)
++++|+++||++++|+.++|+|++|||||||++.|+|..+|.+|.|..++..-. ........++|++.+++. +-
T Consensus 353 ~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti 431 (592)
T PRK10790 353 DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-TF 431 (592)
T ss_pred CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccc-hH
Confidence 357999999999999999999999999999999999999999998888754221 112233456676665543 23
Q ss_pred hcCcceecccccc------------------------------------h--HHHHHHHHHHcCCCCEEEE-ccCCCCCC
Q psy7718 81 LKNGCLCCSVKDN------------------------------------G--VKAIENLMLKRGKFDYILL-ETTGLADP 121 (184)
Q Consensus 81 l~~gci~~~~~~~------------------------------------~--~~~l~~ll~~~~~~d~iii-E~tg~~dp 121 (184)
.+|.++.....++ . +-.|+|.+ ..+|+++++ |||...||
T Consensus 432 ~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaL--l~~~~illlDEpts~LD~ 509 (592)
T PRK10790 432 LANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVL--VQTPQILILDEATANIDS 509 (592)
T ss_pred HHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH--HhCCCEEEEeCCcccCCH
Confidence 4444433211100 0 01223322 157888888 99999999
Q ss_pred hhHHHH
Q psy7718 122 GPIAKV 127 (184)
Q Consensus 122 ~~i~~~ 127 (184)
..-..+
T Consensus 510 ~t~~~i 515 (592)
T PRK10790 510 GTEQAI 515 (592)
T ss_pred HHHHHH
Confidence 865443
No 276
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.42 E-value=4.6e-13 Score=115.19 Aligned_cols=128 Identities=17% Similarity=0.115 Sum_probs=88.9
Q ss_pred CCCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccC----Ccc--cccceeEecCCCchhh
Q psy7718 3 SDSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFG----EGS--AMEKSVSVGDNGNLYE 76 (184)
Q Consensus 3 ~~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~----~~~--~~~~~~~~~~~~~l~~ 76 (184)
++.+-.+|++|||++.+|+|.+++|-||||||||+|.|.|..+|+.|.|..++.. ... ...-...+.|+.++.+
T Consensus 17 ~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p 96 (500)
T COG1129 17 SFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVP 96 (500)
T ss_pred EcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccC
Confidence 4567789999999999999999999999999999999999999999999887421 111 1111225778888888
Q ss_pred hhhhhcCcceeccccc--------chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCC
Q psy7718 77 EWLELKNGCLCCSVKD--------NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLA 119 (184)
Q Consensus 77 ~~~~l~~gci~~~~~~--------~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~ 119 (184)
.++..+|.-+-..... .....-.+++.+ ..+++++|+ |||..+
T Consensus 97 ~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaL 176 (500)
T COG1129 97 NLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAAL 176 (500)
T ss_pred CccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 8888888654432211 000111111110 146777888 999999
Q ss_pred CChhHHHHhhh
Q psy7718 120 DPGPIAKVFWL 130 (184)
Q Consensus 120 dp~~i~~~l~~ 130 (184)
.+.+...+|..
T Consensus 177 t~~E~~~Lf~~ 187 (500)
T COG1129 177 TVKETERLFDL 187 (500)
T ss_pred CHHHHHHHHHH
Confidence 98877666543
No 277
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.42 E-value=1.1e-12 Score=116.17 Aligned_cols=50 Identities=14% Similarity=0.171 Sum_probs=46.8
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEeccc
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEF 56 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~ 56 (184)
+++|+++||++++|+.++|+|+||||||||++.|+|..+|.+|.|..++.
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~ 405 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGH 405 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCE
Confidence 67999999999999999999999999999999999999999999888653
No 278
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.41 E-value=3.9e-13 Score=118.04 Aligned_cols=49 Identities=18% Similarity=0.160 Sum_probs=43.3
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
++.+|+++||++.+|++++|+|+||||||||++.|++..+ .+|.|..++
T Consensus 298 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g 346 (529)
T PRK15134 298 HNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDG 346 (529)
T ss_pred cceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECC
Confidence 3579999999999999999999999999999999999864 677777654
No 279
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.41 E-value=4.3e-13 Score=117.56 Aligned_cols=48 Identities=29% Similarity=0.214 Sum_probs=44.6
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEec
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILN 54 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~ 54 (184)
+.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..+
T Consensus 297 ~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~ 344 (520)
T TIGR03269 297 VKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVR 344 (520)
T ss_pred ceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEe
Confidence 569999999999999999999999999999999999988888888764
No 280
>KOG0059|consensus
Probab=99.41 E-value=4.1e-13 Score=124.07 Aligned_cols=120 Identities=19% Similarity=0.159 Sum_probs=95.4
Q ss_pred CCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcc------cccceeEecCCCchhhhhhhhc
Q psy7718 9 VPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGS------AMEKSVSVGDNGNLYEEWLELK 82 (184)
Q Consensus 9 ~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~------~~~~~~~~~~~~~l~~~~~~l~ 82 (184)
+++++||.+++++++++.|+|||||||++++++|...+.+|.+..++.+... +....++-+|..++.+.++..+
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rE 659 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGRE 659 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHH
Confidence 8999999999999999999999999999999999998888888775443221 2233456778888889999999
Q ss_pred Ccceeccccc----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHHHHh
Q psy7718 83 NGCLCCSVKD----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIAKVF 128 (184)
Q Consensus 83 ~gci~~~~~~----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~~~l 128 (184)
+.-+++.+++ +....++++++. .++|.+|++ |||.+.||.....+.
T Consensus 660 hL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW 738 (885)
T KOG0059|consen 660 HLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLW 738 (885)
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHH
Confidence 9988888776 444555555542 168999999 999999998766543
No 281
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.41 E-value=7.1e-13 Score=115.65 Aligned_cols=50 Identities=22% Similarity=0.265 Sum_probs=44.4
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCC-CeEEEEecc
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHD-KKIAVILNE 55 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~-~~~~vi~~~ 55 (184)
+..+|+++||++.+|++++|+|+||||||||++.|+|..+| .+|.|..++
T Consensus 272 ~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g 322 (500)
T TIGR02633 272 HRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFING 322 (500)
T ss_pred cccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECC
Confidence 35799999999999999999999999999999999998774 678777654
No 282
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.41 E-value=8.6e-13 Score=115.32 Aligned_cols=50 Identities=20% Similarity=0.257 Sum_probs=44.6
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCC-CCeEEEEecc
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQH-DKKIAVILNE 55 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~-~~~~~vi~~~ 55 (184)
+..+|+++||++.+|++++|+|+||||||||++.|+|..+ +.+|.|..++
T Consensus 274 ~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g 324 (506)
T PRK13549 274 HIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDG 324 (506)
T ss_pred ccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECC
Confidence 3569999999999999999999999999999999999876 4778887654
No 283
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.41 E-value=1.1e-12 Score=117.48 Aligned_cols=52 Identities=21% Similarity=0.195 Sum_probs=46.9
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
++++.+|++|||++.+|++++|+|+||||||||+++|+|...|.+|.|..+.
T Consensus 11 ~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~ 62 (638)
T PRK10636 11 RGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPG 62 (638)
T ss_pred eCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC
Confidence 5667899999999999999999999999999999999998888888876643
No 284
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.41 E-value=1.5e-12 Score=115.66 Aligned_cols=119 Identities=22% Similarity=0.161 Sum_probs=81.1
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc-----ccccceeEecCCCchhhhhhhh
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG-----SAMEKSVSVGDNGNLYEEWLEL 81 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~l 81 (184)
+++|+++||++++|+.++|+|+||||||||++.|+|..+|.+|.|..++..-. .......+++|++.++.. +-.
T Consensus 348 ~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~ 426 (588)
T PRK13657 348 RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNR-SIE 426 (588)
T ss_pred CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccc-cHH
Confidence 56999999999999999999999999999999999999888888888653221 122233456676655543 335
Q ss_pred cCcceecc-ccc-chH-------------------------------------HHHHHHHHHcCCCCEEEE-ccCCCCCC
Q psy7718 82 KNGCLCCS-VKD-NGV-------------------------------------KAIENLMLKRGKFDYILL-ETTGLADP 121 (184)
Q Consensus 82 ~~gci~~~-~~~-~~~-------------------------------------~~l~~ll~~~~~~d~iii-E~tg~~dp 121 (184)
+|.++.+. ..+ +.. -.|+|.+ ..+|+++++ |||...||
T Consensus 427 ~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARal--l~~~~iliLDEpts~LD~ 504 (588)
T PRK13657 427 DNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARAL--LKDPPILILDEATSALDV 504 (588)
T ss_pred HHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHH--hcCCCEEEEeCCccCCCH
Confidence 55554321 100 000 1122222 258999999 99999999
Q ss_pred hhHHHHh
Q psy7718 122 GPIAKVF 128 (184)
Q Consensus 122 ~~i~~~l 128 (184)
..-..++
T Consensus 505 ~t~~~i~ 511 (588)
T PRK13657 505 ETEAKVK 511 (588)
T ss_pred HHHHHHH
Confidence 8655543
No 285
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.41 E-value=8.8e-13 Score=116.42 Aligned_cols=50 Identities=24% Similarity=0.281 Sum_probs=44.7
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEe
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVIL 53 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~ 53 (184)
+.++.+|+++||++.+|++++|+|+||||||||++.|+|..+|.+|.|..
T Consensus 332 ~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~ 381 (552)
T TIGR03719 332 FGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKI 381 (552)
T ss_pred ECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEE
Confidence 34567999999999999999999999999999999999988887777755
No 286
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.41 E-value=7.3e-13 Score=117.04 Aligned_cols=50 Identities=26% Similarity=0.282 Sum_probs=45.1
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEe
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVIL 53 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~ 53 (184)
++++.+|++|||++.+|++++|+|+||||||||++.|+|..+|.+|.|..
T Consensus 334 ~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~ 383 (556)
T PRK11819 334 FGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI 383 (556)
T ss_pred ECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence 34567999999999999999999999999999999999988888887765
No 287
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.41 E-value=1.1e-12 Score=107.92 Aligned_cols=51 Identities=24% Similarity=0.272 Sum_probs=44.4
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCC-----CCeEEEEecc
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQH-----DKKIAVILNE 55 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~-----~~~~~vi~~~ 55 (184)
.++.+|+++||++.+|++++|+|+||||||||++.|+|... +.+|.|..++
T Consensus 56 ~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g 111 (305)
T PRK14264 56 GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDG 111 (305)
T ss_pred CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 44679999999999999999999999999999999999864 4677777654
No 288
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.40 E-value=7.1e-13 Score=115.70 Aligned_cols=48 Identities=15% Similarity=0.291 Sum_probs=43.9
Q ss_pred CCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 8 EVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 8 ~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
.+++++||++.+|++++|+|+||||||||++.|+|..++..|.|..++
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g 314 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDG 314 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECC
Confidence 589999999999999999999999999999999999888888877653
No 289
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.40 E-value=1.8e-12 Score=105.48 Aligned_cols=49 Identities=27% Similarity=0.296 Sum_probs=43.9
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEec
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILN 54 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~ 54 (184)
++.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..+
T Consensus 49 ~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~ 97 (282)
T cd03291 49 GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHS 97 (282)
T ss_pred cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEC
Confidence 3569999999999999999999999999999999999887777776553
No 290
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.40 E-value=8.6e-13 Score=105.39 Aligned_cols=51 Identities=20% Similarity=0.180 Sum_probs=43.0
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCC--C---CeEEEEecc
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQH--D---KKIAVILNE 55 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~--~---~~~~vi~~~ 55 (184)
.++.+|+++||++.+|++++|+|+||||||||++.|+|... + ..|.|..++
T Consensus 16 ~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 71 (252)
T PRK14255 16 GKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG 71 (252)
T ss_pred CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcC
Confidence 34679999999999999999999999999999999999643 3 367776654
No 291
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.40 E-value=6.3e-13 Score=116.73 Aligned_cols=49 Identities=16% Similarity=0.135 Sum_probs=43.8
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCC-----CeEEEEecc
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHD-----KKIAVILNE 55 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~-----~~~~vi~~~ 55 (184)
+.+|+++||++.+|++++|+|+||||||||++.|++..++ .+|.|..++
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 75 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHG 75 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECC
Confidence 5799999999999999999999999999999999998764 578777654
No 292
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.40 E-value=2.5e-12 Score=103.20 Aligned_cols=49 Identities=20% Similarity=0.184 Sum_probs=44.7
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
..+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++
T Consensus 34 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g 82 (257)
T cd03288 34 KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDG 82 (257)
T ss_pred CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECC
Confidence 5699999999999999999999999999999999998888788777654
No 293
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.40 E-value=1e-12 Score=105.26 Aligned_cols=50 Identities=22% Similarity=0.129 Sum_probs=44.3
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCC----CeEEEEecc
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHD----KKIAVILNE 55 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~----~~~~vi~~~ 55 (184)
++.+|+++||++.+|++++|+|+||||||||++.|.|..++ .+|.|..++
T Consensus 15 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g 68 (254)
T PRK10418 15 AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDG 68 (254)
T ss_pred ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECC
Confidence 45799999999999999999999999999999999998776 677776654
No 294
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.40 E-value=1.2e-12 Score=114.38 Aligned_cols=48 Identities=21% Similarity=0.238 Sum_probs=44.0
Q ss_pred CCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 8 EVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 8 ~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
.+++++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++
T Consensus 266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g 313 (501)
T PRK10762 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDG 313 (501)
T ss_pred CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 469999999999999999999999999999999999888888887754
No 295
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.40 E-value=1.1e-12 Score=104.67 Aligned_cols=51 Identities=18% Similarity=0.214 Sum_probs=44.0
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhc--CCCCeEEEEecc
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTE--QHDKKIAVILNE 55 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~--~~~~~~~vi~~~ 55 (184)
.++.+|+++||++.+|++++|+|+||||||||++.|+|. .++.+|.|..++
T Consensus 18 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g 70 (252)
T CHL00131 18 NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKG 70 (252)
T ss_pred CCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECC
Confidence 345799999999999999999999999999999999996 356677776643
No 296
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.40 E-value=1.6e-12 Score=114.13 Aligned_cols=79 Identities=23% Similarity=0.173 Sum_probs=58.4
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc-----ccccceeEecCCCchhhhhhhh
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG-----SAMEKSVSVGDNGNLYEEWLEL 81 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~l 81 (184)
+++|+++||++++|+.++|+|++|||||||++.|+|..+|.+|.|..++..-. .......++.|++.+++. +..
T Consensus 335 ~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~-ti~ 413 (529)
T TIGR02857 335 APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAG-TIA 413 (529)
T ss_pred cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCc-CHH
Confidence 47999999999999999999999999999999999999998898888654321 112233456666555432 334
Q ss_pred cCcce
Q psy7718 82 KNGCL 86 (184)
Q Consensus 82 ~~gci 86 (184)
+|.++
T Consensus 414 ~Ni~~ 418 (529)
T TIGR02857 414 ENIRL 418 (529)
T ss_pred HHHhc
Confidence 44433
No 297
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.39 E-value=1.6e-12 Score=116.44 Aligned_cols=51 Identities=24% Similarity=0.225 Sum_probs=46.1
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEec
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILN 54 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~ 54 (184)
++++.+|++|||++.+|++++|+|+||||||||+++|+|...+..|.|..+
T Consensus 13 ~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~ 63 (635)
T PRK11147 13 FSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYE 63 (635)
T ss_pred eCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeC
Confidence 456789999999999999999999999999999999999888888877654
No 298
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.39 E-value=2.1e-12 Score=115.81 Aligned_cols=51 Identities=25% Similarity=0.237 Sum_probs=45.4
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEec
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILN 54 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~ 54 (184)
|+++.+|+++||++.+|++++|+|+||||||||++.|+|...|.+|.|..+
T Consensus 322 y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~ 372 (638)
T PRK10636 322 YGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLA 372 (638)
T ss_pred eCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEC
Confidence 445679999999999999999999999999999999999988877777653
No 299
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.39 E-value=1.8e-12 Score=117.43 Aligned_cols=120 Identities=16% Similarity=0.143 Sum_probs=80.4
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc-----ccccceeEecCCCchhhhhhh
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG-----SAMEKSVSVGDNGNLYEEWLE 80 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~ 80 (184)
++++|+++||++++|+.++|+|++|||||||++.|+|..+|.+|.|..++..-. .......++.|++.++.. +.
T Consensus 491 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-Ti 569 (710)
T TIGR03796 491 EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEG-TV 569 (710)
T ss_pred CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhc-cH
Confidence 367999999999999999999999999999999999999999999988654321 122233456666554432 22
Q ss_pred hcCcceecc-cc------------------------------------cc--hHHHHHHHHHHcCCCCEEEE-ccCCCCC
Q psy7718 81 LKNGCLCCS-VK------------------------------------DN--GVKAIENLMLKRGKFDYILL-ETTGLAD 120 (184)
Q Consensus 81 l~~gci~~~-~~------------------------------------~~--~~~~l~~ll~~~~~~d~iii-E~tg~~d 120 (184)
.+|..+... .. +. ..-.|+|.+ ..+|+++++ |||...|
T Consensus 570 ~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARal--l~~p~iliLDEptS~LD 647 (710)
T TIGR03796 570 RDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARAL--VRNPSILILDEATSALD 647 (710)
T ss_pred HHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHH--hhCCCEEEEECccccCC
Confidence 344332210 00 00 011233333 258999999 9999999
Q ss_pred ChhHHHHh
Q psy7718 121 PGPIAKVF 128 (184)
Q Consensus 121 p~~i~~~l 128 (184)
+..-.+++
T Consensus 648 ~~te~~i~ 655 (710)
T TIGR03796 648 PETEKIID 655 (710)
T ss_pred HHHHHHHH
Confidence 97655543
No 300
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.39 E-value=1.1e-12 Score=117.28 Aligned_cols=82 Identities=20% Similarity=0.161 Sum_probs=60.4
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCC---eEEEEecccCCc--ccccceeEecCCCchhhhhh
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDK---KIAVILNEFGEG--SAMEKSVSVGDNGNLYEEWL 79 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~---~~~vi~~~~~~~--~~~~~~~~~~~~~~l~~~~~ 79 (184)
.++.+|+++|+++++|++++|+|+||||||||++.|++...+. +|.|..++..-. ...+...++.|+..+++.++
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 3577999999999999999999999999999999999976553 677777664321 11223345677666666666
Q ss_pred hhcCcce
Q psy7718 80 ELKNGCL 86 (184)
Q Consensus 80 ~l~~gci 86 (184)
..+|..+
T Consensus 116 V~e~l~f 122 (617)
T TIGR00955 116 VREHLMF 122 (617)
T ss_pred HHHHHHH
Confidence 6666544
No 301
>PRK13409 putative ATPase RIL; Provisional
Probab=99.38 E-value=1.2e-12 Score=116.26 Aligned_cols=46 Identities=22% Similarity=0.117 Sum_probs=41.9
Q ss_pred CCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEec
Q psy7718 9 VPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILN 54 (184)
Q Consensus 9 ~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~ 54 (184)
.|+++||++.+|++++|+|+||||||||++.|+|..+|.+|.|..+
T Consensus 354 ~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~ 399 (590)
T PRK13409 354 SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE 399 (590)
T ss_pred EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe
Confidence 4899999999999999999999999999999999988888877653
No 302
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.38 E-value=2.3e-13 Score=103.99 Aligned_cols=53 Identities=26% Similarity=0.260 Sum_probs=47.4
Q ss_pred CCCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 3 SDSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 3 ~~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
+|+.+.+++++|+++++|.++.|+||||||||||+.++.+..+.++|.|..+.
T Consensus 10 ~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g 62 (252)
T COG4604 10 SYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDG 62 (252)
T ss_pred hhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEee
Confidence 57788999999999999999999999999999999999998877777776643
No 303
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.38 E-value=6.7e-12 Score=94.46 Aligned_cols=51 Identities=29% Similarity=0.184 Sum_probs=45.2
Q ss_pred CCCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEe
Q psy7718 3 SDSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVIL 53 (184)
Q Consensus 3 ~~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~ 53 (184)
+|....-.++|||.+.+|+|.+|+|.+|||||||+++|.+...|..+.|.-
T Consensus 15 ~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y 65 (258)
T COG4107 15 LYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTY 65 (258)
T ss_pred hhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEE
Confidence 467778889999999999999999999999999999999988777766544
No 304
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.38 E-value=2.1e-12 Score=116.97 Aligned_cols=79 Identities=18% Similarity=0.190 Sum_probs=58.9
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc-----ccccceeEecCCCchhhhhhh
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG-----SAMEKSVSVGDNGNLYEEWLE 80 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~ 80 (184)
++++|+++||++++|+.++|+|++|||||||++.|+|...|.+|.|..++..-. .......++.|++.++.. +.
T Consensus 486 ~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI 564 (708)
T TIGR01193 486 GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG-SI 564 (708)
T ss_pred CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhH-HH
Confidence 467999999999999999999999999999999999999999999988754311 122233456666555433 33
Q ss_pred hcCcc
Q psy7718 81 LKNGC 85 (184)
Q Consensus 81 l~~gc 85 (184)
.+|..
T Consensus 565 ~eNi~ 569 (708)
T TIGR01193 565 LENLL 569 (708)
T ss_pred HHHHh
Confidence 44443
No 305
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.37 E-value=3e-12 Score=113.39 Aligned_cols=51 Identities=25% Similarity=0.294 Sum_probs=46.5
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEeccc
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEF 56 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~ 56 (184)
++++|+++||++++|+.++|+|+||||||||++.|+|..+|.+|.|..++.
T Consensus 327 ~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~ 377 (569)
T PRK10789 327 DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDI 377 (569)
T ss_pred CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCE
Confidence 357999999999999999999999999999999999998888888887643
No 306
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.37 E-value=2.7e-12 Score=116.05 Aligned_cols=119 Identities=20% Similarity=0.224 Sum_probs=80.8
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCC-----cccccceeEecCCCchhhhhhh
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGE-----GSAMEKSVSVGDNGNLYEEWLE 80 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~ 80 (184)
++++|+++||++++|+.++|+|+||||||||++.|+|..+|.+|.|..++..- ........+++|++.++.. +.
T Consensus 477 ~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~-TI 555 (694)
T TIGR03375 477 ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYG-TL 555 (694)
T ss_pred CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhh-hH
Confidence 35799999999999999999999999999999999999999999988875321 1222234456776555432 33
Q ss_pred hcCcceecc-cc-cc-------------------------------------hHHHHHHHHHHcCCCCEEEE-ccCCCCC
Q psy7718 81 LKNGCLCCS-VK-DN-------------------------------------GVKAIENLMLKRGKFDYILL-ETTGLAD 120 (184)
Q Consensus 81 l~~gci~~~-~~-~~-------------------------------------~~~~l~~ll~~~~~~d~iii-E~tg~~d 120 (184)
.+|.++... .. ++ .+-.|++.+ ..+|+++++ |||...|
T Consensus 556 ~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARal--l~~p~iliLDE~Ts~LD 633 (694)
T TIGR03375 556 RDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARAL--LRDPPILLLDEPTSAMD 633 (694)
T ss_pred HHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHH--hcCCCEEEEeCCCCCCC
Confidence 444443321 00 00 011233332 257999999 9999999
Q ss_pred ChhHHHH
Q psy7718 121 PGPIAKV 127 (184)
Q Consensus 121 p~~i~~~ 127 (184)
|..-.++
T Consensus 634 ~~te~~i 640 (694)
T TIGR03375 634 NRSEERF 640 (694)
T ss_pred HHHHHHH
Confidence 9765544
No 307
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.37 E-value=3.3e-12 Score=112.89 Aligned_cols=50 Identities=24% Similarity=0.346 Sum_probs=46.7
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
++++|+++||++++|+.++|+|++|||||||++.|+|..+|.+|.|..++
T Consensus 344 ~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g 393 (571)
T TIGR02203 344 DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDG 393 (571)
T ss_pred CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECC
Confidence 36799999999999999999999999999999999999999889888865
No 308
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.37 E-value=4.1e-12 Score=99.86 Aligned_cols=55 Identities=25% Similarity=0.361 Sum_probs=46.3
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCe--EEEEecccCC
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKK--IAVILNEFGE 58 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~--~~vi~~~~~~ 58 (184)
++++++|+++|++|++++..+|+|+||||||||++.+++...|.. +.++.+.++.
T Consensus 41 r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~ 97 (257)
T COG1119 41 RNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGK 97 (257)
T ss_pred ECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccC
Confidence 678999999999999999999999999999999999999876643 4444444443
No 309
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.37 E-value=3.1e-13 Score=103.07 Aligned_cols=86 Identities=16% Similarity=0.127 Sum_probs=69.5
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc------cccc-ceeEecCCCchhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG------SAME-KSVSVGDNGNLYE 76 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~------~~~~-~~~~~~~~~~l~~ 76 (184)
-++..+++++||++.+|+.-+|+|||||||||++..|.|..+|..+.+...+-.+. .+.+ -..+-+|.+.+++
T Consensus 15 F~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe 94 (249)
T COG4674 15 FGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFE 94 (249)
T ss_pred EcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehh
Confidence 35678999999999999999999999999999999999999998899988662221 1111 1235788999999
Q ss_pred hhhhhcCcceecc
Q psy7718 77 EWLELKNGCLCCS 89 (184)
Q Consensus 77 ~~~~l~~gci~~~ 89 (184)
.++.++|..+.|.
T Consensus 95 ~ltV~eNLelA~~ 107 (249)
T COG4674 95 NLTVRENLELALN 107 (249)
T ss_pred hccHHHHHHHHhc
Confidence 9999999887764
No 310
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.36 E-value=1.6e-12 Score=113.01 Aligned_cols=49 Identities=24% Similarity=0.201 Sum_probs=44.9
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
+.+|+++||++.+|++++|+|+||||||||++.|+|..+|.+|.|..++
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G 85 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKG 85 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 4689999999999999999999999999999999999888888887654
No 311
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.36 E-value=3.9e-12 Score=105.69 Aligned_cols=50 Identities=18% Similarity=0.203 Sum_probs=43.2
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCC-----CCeEEEEecc
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQH-----DKKIAVILNE 55 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~-----~~~~~vi~~~ 55 (184)
.+.+|+++||++.+|++++|+|+||||||||++.|++... +..|.|..++
T Consensus 94 ~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG 148 (329)
T PRK14257 94 TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLG 148 (329)
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 3569999999999999999999999999999999999753 3567777654
No 312
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.36 E-value=3.4e-12 Score=113.21 Aligned_cols=118 Identities=18% Similarity=0.154 Sum_probs=78.9
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc-----ccccceeEecCCCchhhhhhhh
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG-----SAMEKSVSVGDNGNLYEEWLEL 81 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~l 81 (184)
+++|+++||++++|+.++|+|++|||||||++.|+|..+|.+|.|..++..-. ........++|++.++.. +..
T Consensus 353 ~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~ 431 (574)
T PRK11160 353 QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSA-TLR 431 (574)
T ss_pred CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcc-cHH
Confidence 56999999999999999999999999999999999999898898888653211 111223356666555443 334
Q ss_pred cCcceecc-ccc-ch------------------------------------HHHHHHHHHHcCCCCEEEE-ccCCCCCCh
Q psy7718 82 KNGCLCCS-VKD-NG------------------------------------VKAIENLMLKRGKFDYILL-ETTGLADPG 122 (184)
Q Consensus 82 ~~gci~~~-~~~-~~------------------------------------~~~l~~ll~~~~~~d~iii-E~tg~~dp~ 122 (184)
+|.++.+. ..+ +. +-.|++.+ ..+|+++++ |||...|+.
T Consensus 432 ~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARal--l~~~~ililDE~ts~lD~~ 509 (574)
T PRK11160 432 DNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARAL--LHDAPLLLLDEPTEGLDAE 509 (574)
T ss_pred HHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHH--hcCCCEEEEeCCcccCCHH
Confidence 44443321 000 00 11223322 257899998 999999997
Q ss_pred hHHHH
Q psy7718 123 PIAKV 127 (184)
Q Consensus 123 ~i~~~ 127 (184)
.-..+
T Consensus 510 t~~~i 514 (574)
T PRK11160 510 TERQI 514 (574)
T ss_pred HHHHH
Confidence 65443
No 313
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.36 E-value=2e-12 Score=112.03 Aligned_cols=50 Identities=20% Similarity=0.177 Sum_probs=45.4
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEeccc
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEF 56 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~ 56 (184)
..++++|||++.+|++++|+|.+||||||+.|.|++...|..+.|..++.
T Consensus 304 ~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~ 353 (539)
T COG1123 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQ 353 (539)
T ss_pred eeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCc
Confidence 46899999999999999999999999999999999998888887777553
No 314
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.35 E-value=4.4e-12 Score=113.91 Aligned_cols=121 Identities=18% Similarity=0.117 Sum_probs=81.0
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcc--c-------ccceeEecCCCchhhh
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGS--A-------MEKSVSVGDNGNLYEE 77 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~--~-------~~~~~~~~~~~~l~~~ 77 (184)
+.+|+++||++++|++++|+|+||||||||++.|++..++.+|.+..++..-.. . .....+++|+..+++.
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 100 (648)
T PRK10535 21 VEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSH 100 (648)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCC
Confidence 469999999999999999999999999999999999988888988886543111 0 1223467777666655
Q ss_pred hhhhcCcceeccc---c-cchHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhH
Q psy7718 78 WLELKNGCLCCSV---K-DNGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPI 124 (184)
Q Consensus 78 ~~~l~~gci~~~~---~-~~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i 124 (184)
++..+|.++.+.. . ........+++++ ..+|+++++ ||+...|+...
T Consensus 101 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~ 180 (648)
T PRK10535 101 LTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSG 180 (648)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence 4444444322111 0 0011111111111 168999999 99999999865
Q ss_pred HHH
Q psy7718 125 AKV 127 (184)
Q Consensus 125 ~~~ 127 (184)
.++
T Consensus 181 ~~l 183 (648)
T PRK10535 181 EEV 183 (648)
T ss_pred HHH
Confidence 544
No 315
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.35 E-value=5.1e-12 Score=111.32 Aligned_cols=49 Identities=24% Similarity=0.175 Sum_probs=45.9
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
+++|+++||++++|+.++|+|+||||||||++.|+|..+|.+|.|..++
T Consensus 331 ~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g 379 (544)
T TIGR01842 331 KPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDG 379 (544)
T ss_pred ccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 5799999999999999999999999999999999999888888888765
No 316
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.35 E-value=4.8e-12 Score=114.77 Aligned_cols=50 Identities=24% Similarity=0.276 Sum_probs=46.5
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
++++|+|+||++++|+.++|+|+|||||||+++.|.|..+|.+|.|..++
T Consensus 493 ~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg 542 (711)
T TIGR00958 493 DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDG 542 (711)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECC
Confidence 35799999999999999999999999999999999999999889888865
No 317
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.34 E-value=1.2e-12 Score=104.46 Aligned_cols=111 Identities=21% Similarity=0.172 Sum_probs=74.6
Q ss_pred CCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcc-----ccc---cee-Eec-CCCchhhh
Q psy7718 8 EVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGS-----AME---KSV-SVG-DNGNLYEE 77 (184)
Q Consensus 8 ~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~-----~~~---~~~-~~~-~~~~l~~~ 77 (184)
.++++|||++.+|++++|+|.|||||||+-|.|++...|.+|.|+.++..-.. ..+ ..+ .+. ....++..
T Consensus 27 ~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ry 106 (268)
T COG4608 27 KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRY 106 (268)
T ss_pred EEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcC
Confidence 68999999999999999999999999999999999999999999886542110 000 000 011 01111122
Q ss_pred hhhhcCcceecccccchHHHHHHHHHHcCCCCEEEE-ccCCCCCChhHHHH
Q psy7718 78 WLELKNGCLCCSVKDNGVKAIENLMLKRGKFDYILL-ETTGLADPGPIAKV 127 (184)
Q Consensus 78 ~~~l~~gci~~~~~~~~~~~l~~ll~~~~~~d~iii-E~tg~~dp~~i~~~ 127 (184)
-.++++| ....-.+++.+. -+|++++. ||+...|..--+++
T Consensus 107 PhelSGG-------QrQRi~IARALa--l~P~liV~DEpvSaLDvSiqaqI 148 (268)
T COG4608 107 PHELSGG-------QRQRIGIARALA--LNPKLIVADEPVSALDVSVQAQI 148 (268)
T ss_pred CcccCch-------hhhhHHHHHHHh--hCCcEEEecCchhhcchhHHHHH
Confidence 2344443 222345677653 48999999 99999997433333
No 318
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.34 E-value=3e-12 Score=112.02 Aligned_cols=48 Identities=21% Similarity=0.262 Sum_probs=43.5
Q ss_pred CCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 8 EVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 8 ~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
.+|+++||++.+|++++|+|+||||||||++.|+|..+|.+|.|..++
T Consensus 277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g 324 (510)
T PRK15439 277 EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNG 324 (510)
T ss_pred CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECC
Confidence 369999999999999999999999999999999998888888887654
No 319
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.34 E-value=5e-12 Score=99.43 Aligned_cols=42 Identities=31% Similarity=0.170 Sum_probs=37.5
Q ss_pred ceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEeccc
Q psy7718 15 AELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEF 56 (184)
Q Consensus 15 l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~ 56 (184)
|++.+|++++|+|+||||||||++.|++..++.+|.|..++.
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 42 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGA 42 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCc
Confidence 578899999999999999999999999998888888877653
No 320
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.34 E-value=2e-12 Score=112.61 Aligned_cols=52 Identities=25% Similarity=0.240 Sum_probs=44.0
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCC-CeEEEEecc
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHD-KKIAVILNE 55 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~-~~~~vi~~~ 55 (184)
|+++.+|+++||++.+|++++|+|+||||||||++.|+|..++ .+|.|..++
T Consensus 270 ~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g 322 (490)
T PRK10938 270 YNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFG 322 (490)
T ss_pred ECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEec
Confidence 3446699999999999999999999999999999999997554 467666654
No 321
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.33 E-value=6e-12 Score=113.82 Aligned_cols=120 Identities=19% Similarity=0.185 Sum_probs=80.3
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc-----ccccceeEecCCCchhhhhhh
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG-----SAMEKSVSVGDNGNLYEEWLE 80 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~ 80 (184)
++++|+++||++++|+.++|+|+||||||||++.|+|...|.+|.|..++..-. .......++.|++.++.. +.
T Consensus 469 ~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~-ti 547 (694)
T TIGR01846 469 SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSR-SI 547 (694)
T ss_pred CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhh-hH
Confidence 356999999999999999999999999999999999999998899888754321 112223356666555432 33
Q ss_pred hcCcceecc-cc-cch-------------------------------------HHHHHHHHHHcCCCCEEEE-ccCCCCC
Q psy7718 81 LKNGCLCCS-VK-DNG-------------------------------------VKAIENLMLKRGKFDYILL-ETTGLAD 120 (184)
Q Consensus 81 l~~gci~~~-~~-~~~-------------------------------------~~~l~~ll~~~~~~d~iii-E~tg~~d 120 (184)
.+|.++... .. ++. .-.|++.+ ..+|+++++ |||...|
T Consensus 548 ~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARal--l~~~~ililDEpts~LD 625 (694)
T TIGR01846 548 RDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARAL--VGNPRILIFDEATSALD 625 (694)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHH--HhCCCEEEEECCCcCCC
Confidence 445443221 10 000 11222222 257999999 9999999
Q ss_pred ChhHHHHh
Q psy7718 121 PGPIAKVF 128 (184)
Q Consensus 121 p~~i~~~l 128 (184)
+..-.++.
T Consensus 626 ~~~~~~i~ 633 (694)
T TIGR01846 626 YESEALIM 633 (694)
T ss_pred HHHHHHHH
Confidence 98655443
No 322
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.33 E-value=5.8e-12 Score=113.46 Aligned_cols=119 Identities=23% Similarity=0.203 Sum_probs=81.1
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc-----ccccceeEecCCCchhhhhhhh
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG-----SAMEKSVSVGDNGNLYEEWLEL 81 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~l 81 (184)
..+|+|+||++++|+.++|+|.||||||||+|.|.|...|..|.|..++..-. ...+...++.|+..++... ..
T Consensus 486 ~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gS-I~ 564 (709)
T COG2274 486 PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGS-IR 564 (709)
T ss_pred cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCc-HH
Confidence 47999999999999999999999999999999999999999999998765432 2223344666665544321 23
Q ss_pred cCcceeccccc--ch-------------------------------------HHHHHHHHHHcCCCCEEEE-ccCCCCCC
Q psy7718 82 KNGCLCCSVKD--NG-------------------------------------VKAIENLMLKRGKFDYILL-ETTGLADP 121 (184)
Q Consensus 82 ~~gci~~~~~~--~~-------------------------------------~~~l~~ll~~~~~~d~iii-E~tg~~dp 121 (184)
+|.+++-.... +. .-+|+|.+ ..+|.++++ |+|...||
T Consensus 565 eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaL--l~~P~ILlLDEaTSaLD~ 642 (709)
T COG2274 565 ENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARAL--LSKPKILLLDEATSALDP 642 (709)
T ss_pred HHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHh--ccCCCEEEEeCcccccCH
Confidence 44433321100 00 11233332 268999999 99999999
Q ss_pred hhHHHHh
Q psy7718 122 GPIAKVF 128 (184)
Q Consensus 122 ~~i~~~l 128 (184)
..-..+.
T Consensus 643 ~sE~~I~ 649 (709)
T COG2274 643 ETEAIIL 649 (709)
T ss_pred hHHHHHH
Confidence 7544443
No 323
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.33 E-value=4.3e-12 Score=110.54 Aligned_cols=49 Identities=16% Similarity=0.205 Sum_probs=44.8
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
+.+|+++||++.+|++++|+|+||||||||++.|+|..++.+|.|..++
T Consensus 261 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 309 (491)
T PRK10982 261 QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHG 309 (491)
T ss_pred CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECC
Confidence 4589999999999999999999999999999999999888888887754
No 324
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.32 E-value=8.8e-12 Score=112.17 Aligned_cols=48 Identities=15% Similarity=0.061 Sum_probs=42.6
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEe
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVIL 53 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~ 53 (184)
++.+|+++||++++|++++|+|+||||||||++.|+|..++.+|.+..
T Consensus 464 ~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~ 511 (659)
T TIGR00954 464 GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTK 511 (659)
T ss_pred CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEee
Confidence 457999999999999999999999999999999999987776666544
No 325
>KOG0061|consensus
Probab=99.31 E-value=7.1e-12 Score=111.75 Aligned_cols=123 Identities=20% Similarity=0.155 Sum_probs=87.9
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCC---CCeEEEEecccCC-c-ccccceeEecCCCchhhhhhh
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQH---DKKIAVILNEFGE-G-SAMEKSVSVGDNGNLYEEWLE 80 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~---~~~~~vi~~~~~~-~-~~~~~~~~~~~~~~l~~~~~~ 80 (184)
.+.+|++||..+++|++.+|.|++|||||||++.|++... ..+|.|..|+... . .......++.|+..+++.+++
T Consensus 42 ~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV 121 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTV 121 (613)
T ss_pred cceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccH
Confidence 4789999999999999999999999999999999999754 3688999998332 2 223345578888777777777
Q ss_pred hcCcceecccc--c-----chHHHHHHHHHH---------------------------------cCCCCEEEE-ccCCCC
Q psy7718 81 LKNGCLCCSVK--D-----NGVKAIENLMLK---------------------------------RGKFDYILL-ETTGLA 119 (184)
Q Consensus 81 l~~gci~~~~~--~-----~~~~~l~~ll~~---------------------------------~~~~d~iii-E~tg~~ 119 (184)
.+..-++..++ . .....+++++.+ ..+|.++++ |||.+.
T Consensus 122 ~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGL 201 (613)
T KOG0061|consen 122 RETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGL 201 (613)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCc
Confidence 77665554332 1 112233333321 167888988 999999
Q ss_pred CChhHHHHh
Q psy7718 120 DPGPIAKVF 128 (184)
Q Consensus 120 dp~~i~~~l 128 (184)
|+..-..++
T Consensus 202 DS~sA~~vv 210 (613)
T KOG0061|consen 202 DSFSALQVV 210 (613)
T ss_pred chhhHHHHH
Confidence 986544433
No 326
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.31 E-value=8.6e-12 Score=110.86 Aligned_cols=49 Identities=27% Similarity=0.228 Sum_probs=45.6
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
+++++++||++++|+.++|+|+||||||||++.|+|..+|.+|.|..++
T Consensus 348 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g 396 (585)
T TIGR01192 348 SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDG 396 (585)
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECC
Confidence 5699999999999999999999999999999999999888888887764
No 327
>KOG0058|consensus
Probab=99.30 E-value=6.4e-12 Score=111.08 Aligned_cols=71 Identities=21% Similarity=0.260 Sum_probs=55.5
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcc-----cccceeEecCCCchhh
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGS-----AMEKSVSVGDNGNLYE 76 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~-----~~~~~~~~~~~~~l~~ 76 (184)
+.++|+|+||++++|++++++||+|+||||+++.|.+...|.+|.|+.++..-.. .......+.|++.++.
T Consensus 480 ~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs 555 (716)
T KOG0058|consen 480 DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFS 555 (716)
T ss_pred CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeec
Confidence 4569999999999999999999999999999999999999999999886543211 1122335666665543
No 328
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.30 E-value=1.2e-11 Score=109.48 Aligned_cols=49 Identities=22% Similarity=0.314 Sum_probs=45.8
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
+.+|+++||++++|+.++|+|++|||||||++.|+|..+|.+|.|..++
T Consensus 353 ~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g 401 (576)
T TIGR02204 353 QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDG 401 (576)
T ss_pred CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECC
Confidence 5799999999999999999999999999999999999988888887765
No 329
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.30 E-value=1.1e-12 Score=106.41 Aligned_cols=118 Identities=15% Similarity=0.099 Sum_probs=84.2
Q ss_pred CCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcc--------cccc-eeEecCCCchhhhhh
Q psy7718 9 VPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGS--------AMEK-SVSVGDNGNLYEEWL 79 (184)
Q Consensus 9 ~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~--------~~~~-~~~~~~~~~l~~~~~ 79 (184)
-++++||++..|+++.|.|-+|||||||+|++.+...|.+|.|+.++..-.. +.++ ..-++|..+++++.+
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrt 122 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRT 122 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchh
Confidence 4789999999999999999999999999999999999999999886543211 1112 224789999999999
Q ss_pred hhcCcceecccccchH----HHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHHH
Q psy7718 80 ELKNGCLCCSVKDNGV----KAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIAK 126 (184)
Q Consensus 80 ~l~~gci~~~~~~~~~----~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~~ 126 (184)
.++|..+--.+++... +...+.++. ..+||+++. |+...+||--..+
T Consensus 123 Vl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~ 202 (386)
T COG4175 123 VLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTE 202 (386)
T ss_pred HhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHH
Confidence 9999765443332211 111111111 157888888 9999999864443
No 330
>PLN03073 ABC transporter F family; Provisional
Probab=99.29 E-value=9.1e-12 Score=112.78 Aligned_cols=48 Identities=19% Similarity=0.136 Sum_probs=43.4
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEec
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILN 54 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~ 54 (184)
+.+|+++||++.+|++++|+|+||||||||++.|+|..+|.+|.|..+
T Consensus 522 ~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~ 569 (718)
T PLN03073 522 PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRS 569 (718)
T ss_pred CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEEC
Confidence 469999999999999999999999999999999999988877777643
No 331
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.29 E-value=8.3e-12 Score=119.99 Aligned_cols=80 Identities=20% Similarity=0.060 Sum_probs=56.8
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCC---CCeEEEEecccCCc-ccccceeEecCCCchhhhhhhh
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQH---DKKIAVILNEFGEG-SAMEKSVSVGDNGNLYEEWLEL 81 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~---~~~~~vi~~~~~~~-~~~~~~~~~~~~~~l~~~~~~l 81 (184)
.+.+|++||+++++|++++|+|+||||||||++.|++... +.+|.|..++..-. ...+...++.|+..++..++..
T Consensus 775 ~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~ 854 (1394)
T TIGR00956 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVR 854 (1394)
T ss_pred CcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHH
Confidence 4679999999999999999999999999999999999865 45688877653221 1122234566654444444444
Q ss_pred cCcc
Q psy7718 82 KNGC 85 (184)
Q Consensus 82 ~~gc 85 (184)
++..
T Consensus 855 E~L~ 858 (1394)
T TIGR00956 855 ESLR 858 (1394)
T ss_pred HHHH
Confidence 4443
No 332
>PLN03140 ABC transporter G family member; Provisional
Probab=99.28 E-value=7.7e-12 Score=120.36 Aligned_cols=81 Identities=17% Similarity=0.140 Sum_probs=57.3
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCC--CeEEEEecccCCc--ccccceeEecCCCchhhhhhh
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHD--KKIAVILNEFGEG--SAMEKSVSVGDNGNLYEEWLE 80 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~--~~~~vi~~~~~~~--~~~~~~~~~~~~~~l~~~~~~ 80 (184)
+.+.+|++||+++++|++++|.|+||||||||++.|++...+ .+|.|..++.... ...+...++.|...+++.++.
T Consensus 891 ~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV 970 (1470)
T PLN03140 891 DRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTV 970 (1470)
T ss_pred CCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcH
Confidence 345799999999999999999999999999999999997643 4566766653321 111223456676555555555
Q ss_pred hcCcc
Q psy7718 81 LKNGC 85 (184)
Q Consensus 81 l~~gc 85 (184)
.++..
T Consensus 971 ~E~L~ 975 (1470)
T PLN03140 971 RESLI 975 (1470)
T ss_pred HHHHH
Confidence 55543
No 333
>KOG0057|consensus
Probab=99.28 E-value=1.5e-11 Score=105.79 Aligned_cols=74 Identities=18% Similarity=0.149 Sum_probs=57.9
Q ss_pred CCCCC-CCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCC-----cccccceeEecCCCchhhh
Q psy7718 4 DSDSE-VPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGE-----GSAMEKSVSVGDNGNLYEE 77 (184)
Q Consensus 4 ~~~~~-~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~l~~~ 77 (184)
|..++ +|+++||++++|+.++|+|.|||||||+||.|.+... .+|.|.+++..- .+......+++|+..++++
T Consensus 361 y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd 439 (591)
T KOG0057|consen 361 YGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFND 439 (591)
T ss_pred eCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccch
Confidence 44444 9999999999999999999999999999999999876 778888865432 2223334478888777665
Q ss_pred h
Q psy7718 78 W 78 (184)
Q Consensus 78 ~ 78 (184)
.
T Consensus 440 T 440 (591)
T KOG0057|consen 440 T 440 (591)
T ss_pred h
Confidence 3
No 334
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.28 E-value=2.8e-11 Score=106.76 Aligned_cols=118 Identities=15% Similarity=0.100 Sum_probs=76.7
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc-----ccccceeEecCCCchhhhhhhh
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG-----SAMEKSVSVGDNGNLYEEWLEL 81 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~l 81 (184)
+++|+++||++++|+.++|+|+||||||||++.|+|..+|.+|.|..++..-. ........++|++.+++... .
T Consensus 336 ~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti-~ 414 (547)
T PRK10522 336 GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLL-G 414 (547)
T ss_pred CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhh-c
Confidence 56999999999999999999999999999999999999898898887653211 11122334555544333211 1
Q ss_pred cCc---------------cee------------cccccc--hHHHHHHHHHHcCCCCEEEE-ccCCCCCChhHHHH
Q psy7718 82 KNG---------------CLC------------CSVKDN--GVKAIENLMLKRGKFDYILL-ETTGLADPGPIAKV 127 (184)
Q Consensus 82 ~~g---------------ci~------------~~~~~~--~~~~l~~ll~~~~~~d~iii-E~tg~~dp~~i~~~ 127 (184)
+|+ .+. ..+.+. .+-.|++.+ ..+|+++++ |||...||..-..+
T Consensus 415 ~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal--~~~~~ililDE~ts~LD~~~~~~i 488 (547)
T PRK10522 415 PEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLAL--AEERDILLLDEWAADQDPHFRREF 488 (547)
T ss_pred cccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHH--hcCCCEEEEECCCCCCCHHHHHHH
Confidence 110 000 001011 112345544 358999999 99999999765543
No 335
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.28 E-value=1.2e-11 Score=109.57 Aligned_cols=50 Identities=20% Similarity=0.315 Sum_probs=46.5
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
++++|+++||++++|+.++|+|++||||||+++.|.+...+.+|.|..++
T Consensus 341 ~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg 390 (567)
T COG1132 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDG 390 (567)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECC
Confidence 57899999999999999999999999999999999999988888888743
No 336
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.28 E-value=1.3e-11 Score=108.05 Aligned_cols=51 Identities=22% Similarity=0.137 Sum_probs=43.4
Q ss_pred CCCC-CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEe
Q psy7718 3 SDSD-SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVIL 53 (184)
Q Consensus 3 ~~~~-~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~ 53 (184)
+|++ +.+++++||.+.++..++|+||||+|||||++.|++...+.+|.|..
T Consensus 330 ~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~ 381 (530)
T COG0488 330 GYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKV 381 (530)
T ss_pred ccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEe
Confidence 3433 68999999999999999999999999999999998877666665553
No 337
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=5.4e-11 Score=103.17 Aligned_cols=55 Identities=22% Similarity=0.228 Sum_probs=50.2
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCC
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGE 58 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~ 58 (184)
++++++++++||++++|+.++|+|+||||||||++.|+|..+++.|.|..|+..-
T Consensus 331 ~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l 385 (559)
T COG4988 331 PDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDL 385 (559)
T ss_pred CCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccc
Confidence 4556999999999999999999999999999999999999999999999987543
No 338
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.9e-11 Score=95.31 Aligned_cols=49 Identities=22% Similarity=0.257 Sum_probs=43.8
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcC--CCCeEEEEecc
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQ--HDKKIAVILNE 55 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~--~~~~~~vi~~~ 55 (184)
+++|++|||++++|++.+|.||||||||||.+.|+|.. ...+|.|+.++
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~G 67 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDG 67 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECC
Confidence 58999999999999999999999999999999999974 55677887754
No 339
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.26 E-value=3.1e-11 Score=91.32 Aligned_cols=74 Identities=24% Similarity=0.275 Sum_probs=57.4
Q ss_pred ccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc--cccccee-EecCCCchhhhhhhhcCcce
Q psy7718 13 VPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG--SAMEKSV-SVGDNGNLYEEWLELKNGCL 86 (184)
Q Consensus 13 v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~--~~~~~~~-~~~~~~~l~~~~~~l~~gci 86 (184)
.++++..+++++|.|++|||||||++.++|...|.+|.|..|+..-. ...++.+ -++|+..++.+++...|.-+
T Consensus 18 fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigL 94 (231)
T COG3840 18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGL 94 (231)
T ss_pred EEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcc
Confidence 35668899999999999999999999999999999999988765432 1122222 36788888888888777654
No 340
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.25 E-value=3.7e-11 Score=106.20 Aligned_cols=49 Identities=16% Similarity=0.179 Sum_probs=45.5
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
+++|+++||++++|+.++|+|+||||||||++.|++...|.+|.|..++
T Consensus 355 ~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g 403 (555)
T TIGR01194 355 GFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDG 403 (555)
T ss_pred CceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC
Confidence 3699999999999999999999999999999999999999889888764
No 341
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.23 E-value=2.9e-11 Score=96.89 Aligned_cols=117 Identities=19% Similarity=0.140 Sum_probs=83.1
Q ss_pred cccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccC-----Cc----ccccceeEecCCCchhhhhhhhc
Q psy7718 12 LVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFG-----EG----SAMEKSVSVGDNGNLYEEWLELK 82 (184)
Q Consensus 12 ~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~-----~~----~~~~~~~~~~~~~~l~~~~~~l~ 82 (184)
+++|......++++-|++||||||+||++.|..+|.++.|..|+.- .. ...++..++||+..++++++...
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 4567777768999999999999999999999999999998887632 11 12345668999999999999999
Q ss_pred Ccceeccc--ccchHH-----HHHHHHHH-------------------cCCCCEEEE-ccCCCCCChhHHHHh
Q psy7718 83 NGCLCCSV--KDNGVK-----AIENLMLK-------------------RGKFDYILL-ETTGLADPGPIAKVF 128 (184)
Q Consensus 83 ~gci~~~~--~~~~~~-----~l~~ll~~-------------------~~~~d~iii-E~tg~~dp~~i~~~l 128 (184)
|.|+-... +.++.. .|.-|+.+ ...|+++++ ||-...|-....|++
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~Eil 168 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREIL 168 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHH
Confidence 98754321 112211 11222322 157999999 999888865555554
No 342
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=4.7e-11 Score=102.64 Aligned_cols=51 Identities=22% Similarity=0.229 Sum_probs=47.1
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccC
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFG 57 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~ 57 (184)
.++|+|+||++++|+.++|+|++||||||+++.|.+...+.+|.|..++..
T Consensus 351 ~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~ 401 (573)
T COG4987 351 TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVE 401 (573)
T ss_pred cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcC
Confidence 469999999999999999999999999999999999999999999887643
No 343
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.23 E-value=2.8e-11 Score=116.39 Aligned_cols=80 Identities=13% Similarity=0.119 Sum_probs=57.3
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcC----CCCeEEEEecccCCc----ccccceeEecCCCchhh
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQ----HDKKIAVILNEFGEG----SAMEKSVSVGDNGNLYE 76 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~----~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~l~~ 76 (184)
..+.+|++||+++++|++++|+|+||||||||+|.|++.. .+.+|.|..++..-. .......++.|+..+++
T Consensus 72 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~ 151 (1394)
T TIGR00956 72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP 151 (1394)
T ss_pred CcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCC
Confidence 3467999999999999999999999999999999999974 356788887654221 11112345666655555
Q ss_pred hhhhhcCc
Q psy7718 77 EWLELKNG 84 (184)
Q Consensus 77 ~~~~l~~g 84 (184)
.++..++.
T Consensus 152 ~lTV~E~l 159 (1394)
T TIGR00956 152 HLTVGETL 159 (1394)
T ss_pred CCCHHHHH
Confidence 55555444
No 344
>PLN03073 ABC transporter F family; Provisional
Probab=99.23 E-value=2e-11 Score=110.61 Aligned_cols=40 Identities=23% Similarity=0.186 Sum_probs=37.1
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhc
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
|+++.+|+++||++.+|++++|+|+||||||||+++|++.
T Consensus 187 y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~ 226 (718)
T PLN03073 187 VGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMH 226 (718)
T ss_pred eCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 4567799999999999999999999999999999999974
No 345
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.22 E-value=7.8e-11 Score=94.62 Aligned_cols=44 Identities=18% Similarity=0.067 Sum_probs=40.9
Q ss_pred CCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEE
Q psy7718 8 EVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVI 52 (184)
Q Consensus 8 ~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi 52 (184)
.+++++|+ +.+|++++|+|+||||||||++.|+|..++.+|.|.
T Consensus 15 ~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~ 58 (255)
T cd03236 15 FKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFD 58 (255)
T ss_pred hhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEe
Confidence 58999995 999999999999999999999999999988888874
No 346
>PLN03232 ABC transporter C family member; Provisional
Probab=99.22 E-value=4.7e-11 Score=115.64 Aligned_cols=70 Identities=16% Similarity=0.187 Sum_probs=54.9
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcc-----cccceeEecCCCchhh
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGS-----AMEKSVSVGDNGNLYE 76 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~-----~~~~~~~~~~~~~l~~ 76 (184)
+++|+|+||++++|+.++|+|++|||||||++.|.+...+.+|.|..++..-.. ...+...++|++.++.
T Consensus 1249 ~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~ 1323 (1495)
T PLN03232 1249 PPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFS 1323 (1495)
T ss_pred CcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeC
Confidence 579999999999999999999999999999999999998988998887543211 1122335666655543
No 347
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.20 E-value=1.3e-11 Score=95.59 Aligned_cols=51 Identities=22% Similarity=0.288 Sum_probs=46.1
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
.++.+|+++||++.+++.+.|+|.||||||||++.+.|...+.+|.|..++
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg 67 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDG 67 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECc
Confidence 457799999999999999999999999999999999999888888777754
No 348
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.20 E-value=5.1e-11 Score=101.92 Aligned_cols=52 Identities=21% Similarity=0.162 Sum_probs=47.9
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
+..+++++++||++.+|+..+|+||+|||||||.|.|.|..+|.+|.|..+.
T Consensus 346 g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDg 397 (580)
T COG4618 346 GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDG 397 (580)
T ss_pred CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecc
Confidence 4567899999999999999999999999999999999999999998888754
No 349
>PLN03130 ABC transporter C family member; Provisional
Probab=99.19 E-value=1.2e-10 Score=113.32 Aligned_cols=70 Identities=17% Similarity=0.197 Sum_probs=55.6
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcc-----cccceeEecCCCchhh
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGS-----AMEKSVSVGDNGNLYE 76 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~-----~~~~~~~~~~~~~l~~ 76 (184)
+++|+|+||++++|+.++|+|++||||||+++.|.+...+.+|.|..++..-.. ...+...++|++.++.
T Consensus 1252 ~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~ 1326 (1622)
T PLN03130 1252 PPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFS 1326 (1622)
T ss_pred CceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCcccc
Confidence 479999999999999999999999999999999999998988999887643221 1122335677765544
No 350
>PLN03140 ABC transporter G family member; Provisional
Probab=99.19 E-value=4.9e-11 Score=114.94 Aligned_cols=81 Identities=15% Similarity=0.109 Sum_probs=60.1
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCC---eEEEEecccCCcc--cccceeEecCCCchhhhhhh
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDK---KIAVILNEFGEGS--AMEKSVSVGDNGNLYEEWLE 80 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~---~~~vi~~~~~~~~--~~~~~~~~~~~~~l~~~~~~ 80 (184)
.+.+|+|+|+.+++|++++|+|+||||||||++.|++...+. +|.|..|+..-.. ......++.|...+++.++.
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 256 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTV 256 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcH
Confidence 467999999999999999999999999999999999987665 7888776543211 11234466776555555666
Q ss_pred hcCcce
Q psy7718 81 LKNGCL 86 (184)
Q Consensus 81 l~~gci 86 (184)
.++..+
T Consensus 257 ~EtL~f 262 (1470)
T PLN03140 257 KETLDF 262 (1470)
T ss_pred HHHHHH
Confidence 555543
No 351
>KOG0055|consensus
Probab=99.16 E-value=8.8e-11 Score=109.22 Aligned_cols=70 Identities=16% Similarity=0.169 Sum_probs=55.0
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcc-----cccceeEecCCCchh
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGS-----AMEKSVSVGDNGNLY 75 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~-----~~~~~~~~~~~~~l~ 75 (184)
+-.+|+|+||.+++|+.++|+|++||||||+++.|.+...|.+|.|..++..-.. .......++|++.++
T Consensus 365 dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF 439 (1228)
T KOG0055|consen 365 DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLF 439 (1228)
T ss_pred cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhh
Confidence 3469999999999999999999999999999999999999999999886543211 112233566666544
No 352
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.15 E-value=1.1e-10 Score=112.75 Aligned_cols=48 Identities=23% Similarity=0.225 Sum_probs=45.2
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEec
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILN 54 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~ 54 (184)
.++|+++||++++|++++|+|+||||||||++.|.+...|.+|.|..+
T Consensus 398 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~ 445 (1466)
T PTZ00265 398 VEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIIN 445 (1466)
T ss_pred CceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEe
Confidence 469999999999999999999999999999999999999989988884
No 353
>PRK13409 putative ATPase RIL; Provisional
Probab=99.15 E-value=7.9e-11 Score=104.73 Aligned_cols=48 Identities=23% Similarity=-0.024 Sum_probs=42.5
Q ss_pred CCC-CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEE
Q psy7718 4 DSD-SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVI 52 (184)
Q Consensus 4 ~~~-~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi 52 (184)
|+. ..+|++++ ++++|++++|+|+||||||||++.|+|..+|..|.|.
T Consensus 83 yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~ 131 (590)
T PRK13409 83 YGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYE 131 (590)
T ss_pred ecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCcccc
Confidence 443 35999999 8999999999999999999999999999888777775
No 354
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.15 E-value=1.5e-10 Score=112.36 Aligned_cols=70 Identities=16% Similarity=0.147 Sum_probs=54.7
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcc-----cccceeEecCCCchhh
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGS-----AMEKSVSVGDNGNLYE 76 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~-----~~~~~~~~~~~~~l~~ 76 (184)
.++|+||||++++|+.++|+|++|||||||++.|.+...+.+|.|..++..-.. ...+...++|++.++.
T Consensus 1299 ~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~ 1373 (1522)
T TIGR00957 1299 DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFS 1373 (1522)
T ss_pred cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccC
Confidence 479999999999999999999999999999999999988888888887643221 1122335666665544
No 355
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.14 E-value=5.8e-11 Score=92.00 Aligned_cols=106 Identities=15% Similarity=0.030 Sum_probs=62.3
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcC----CCCeEEEEecccCCcccccceeEecCCCchhhhhhhh
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQ----HDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLEL 81 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~----~~~~~~vi~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 81 (184)
...++++++|.. +++++|+||||||||||+|.+.+.. .+.. +... . ..+|...++..++..
T Consensus 13 ~~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~---v~a~----~------~~~q~~~l~~~~~~~ 77 (199)
T cd03283 13 EKRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVILAQAGAP---VCAS----S------FELPPVKIFTSIRVS 77 (199)
T ss_pred CCeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHHHHHcCCE---EecC----c------cCcccceEEEeccch
Confidence 356778888766 5999999999999999999998642 1111 1000 0 011222222233333
Q ss_pred cCcceecccccchHHHHHHHHHHcC--CCCEEEE-ccCCCCCChhHHH
Q psy7718 82 KNGCLCCSVKDNGVKAIENLMLKRG--KFDYILL-ETTGLADPGPIAK 126 (184)
Q Consensus 82 ~~gci~~~~~~~~~~~l~~ll~~~~--~~d~iii-E~tg~~dp~~i~~ 126 (184)
++...-.+........+.+++.+.. .|+++++ ||+...||.....
T Consensus 78 d~l~~~~s~~~~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~ 125 (199)
T cd03283 78 DDLRDGISYFYAELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQA 125 (199)
T ss_pred hccccccChHHHHHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHH
Confidence 3321111111111245667776666 8999999 9999999875543
No 356
>PTZ00243 ABC transporter; Provisional
Probab=99.14 E-value=2.7e-10 Score=110.73 Aligned_cols=70 Identities=20% Similarity=0.153 Sum_probs=55.0
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcc-----cccceeEecCCCchhh
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGS-----AMEKSVSVGDNGNLYE 76 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~-----~~~~~~~~~~~~~l~~ 76 (184)
..+|+||||++++|+.++|+|++|||||||++.|++...+.+|.|..++..-.. .......++|++.++.
T Consensus 1323 ~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~ 1397 (1560)
T PTZ00243 1323 PLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFD 1397 (1560)
T ss_pred CceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCcccc
Confidence 459999999999999999999999999999999999998888988886543211 1122335667665554
No 357
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.13 E-value=9.6e-11 Score=97.19 Aligned_cols=103 Identities=17% Similarity=0.104 Sum_probs=66.2
Q ss_pred EEecCCChHHHHHHHHHhcCCCCeEEEEecccC--Cc-ccccceeEecCCCchhhhhhhhcCcceeccccc----chHHH
Q psy7718 25 ITGYLGAGKTTLLNYILTEQHDKKIAVILNEFG--EG-SAMEKSVSVGDNGNLYEEWLELKNGCLCCSVKD----NGVKA 97 (184)
Q Consensus 25 i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~--~~-~~~~~~~~~~~~~~l~~~~~~l~~gci~~~~~~----~~~~~ 97 (184)
|+|+||||||||++.|+|..++.+|.|..++.. .. ...+...+++|+..++..++..+|..+....++ .....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 579999999999999999988888888775432 11 112234467787777766666776654322111 11111
Q ss_pred HHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHHHH
Q psy7718 98 IENLMLK----------------------------RGKFDYILL-ETTGLADPGPIAKV 127 (184)
Q Consensus 98 l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~~~ 127 (184)
+.++++. ..+|+++++ ||+...||....++
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l 139 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQM 139 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHH
Confidence 2222211 168999999 99999999865543
No 358
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.13 E-value=2.5e-10 Score=110.60 Aligned_cols=49 Identities=20% Similarity=0.270 Sum_probs=44.6
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
+++|+++||++++|++++|+|+||||||||++.|+|..++.+|.|..++
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g 487 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG 487 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 4689999999999999999999999999999999999888888776643
No 359
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.12 E-value=1.7e-10 Score=100.13 Aligned_cols=49 Identities=27% Similarity=0.232 Sum_probs=43.3
Q ss_pred CCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCC----eEEEEeccc
Q psy7718 8 EVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDK----KIAVILNEF 56 (184)
Q Consensus 8 ~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~----~~~vi~~~~ 56 (184)
.+++||||++.+|++++|+|.+||||||+.+.|++..+.. .|.|+.++-
T Consensus 23 ~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~ 75 (539)
T COG1123 23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR 75 (539)
T ss_pred eeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCc
Confidence 5999999999999999999999999999999999976543 678877653
No 360
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.11 E-value=3.3e-10 Score=109.43 Aligned_cols=41 Identities=17% Similarity=0.213 Sum_probs=38.4
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCC
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHD 46 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~ 46 (184)
+.++|+++||++++|+.++|+|++||||||+++.|++...|
T Consensus 1180 ~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265 1180 NVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred CCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 35799999999999999999999999999999999998766
No 361
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.10 E-value=3.1e-10 Score=109.97 Aligned_cols=70 Identities=14% Similarity=0.095 Sum_probs=54.1
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcc-----cccceeEecCCCchhh
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGS-----AMEKSVSVGDNGNLYE 76 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~-----~~~~~~~~~~~~~l~~ 76 (184)
.+++|+||||++++|+.++|+|++|||||||++.|++... .+|.|..++..-.. ...+...++|++.++.
T Consensus 1231 ~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~ 1305 (1490)
T TIGR01271 1231 GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFS 1305 (1490)
T ss_pred CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCc
Confidence 4679999999999999999999999999999999999875 67888887643221 1123335677766554
No 362
>PTZ00243 ABC transporter; Provisional
Probab=99.08 E-value=4.6e-10 Score=109.12 Aligned_cols=48 Identities=23% Similarity=0.243 Sum_probs=43.5
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEe
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVIL 53 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~ 53 (184)
++.+|+++||++++|++++|+|+||||||||++.|+|...+.+|.|..
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~ 719 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWA 719 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEE
Confidence 456999999999999999999999999999999999998887777654
No 363
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=99.07 E-value=1.4e-10 Score=86.43 Aligned_cols=104 Identities=21% Similarity=0.255 Sum_probs=65.3
Q ss_pred EEEEEecCCChHHHHHHHHHhcC--CCCeEEEEecccCCcccc---cceeEecCCCchhhhhhhhcCcceecccccc-hH
Q psy7718 22 VTIITGYLGAGKTTLLNYILTEQ--HDKKIAVILNEFGEGSAM---EKSVSVGDNGNLYEEWLELKNGCLCCSVKDN-GV 95 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~~--~~~~~~vi~~~~~~~~~~---~~~~~~~~~~~l~~~~~~l~~gci~~~~~~~-~~ 95 (184)
|++|+|++||||||+++.|+... .+.+++++.++.+..... .+.....+.++ ......++|.||..... ..
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~~~~~~~d~~~~D~~~~~~aga---~~v~~~~~~~~~~~~~~~~~ 77 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIKHDHHDFDIDKNGKDSYRHREAGA---DQVIVASSRRYAFMHETQEE 77 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccccCCCccccHHHHHhCCC---CEEEEecCCeEEEEEecCCC
Confidence 57899999999999999999863 467899998876543221 11111222221 23345666666654321 12
Q ss_pred HHHHHHHHHcCCCCEEEEccCCCCCChhHHHHhh
Q psy7718 96 KAIENLMLKRGKFDYILLETTGLADPGPIAKVFW 129 (184)
Q Consensus 96 ~~l~~ll~~~~~~d~iiiE~tg~~dp~~i~~~l~ 129 (184)
..+.+++.+....|+|++|..+. .|.+..+++.
T Consensus 78 ~~l~~ll~~~~~~D~vlVEG~k~-~~~pki~v~~ 110 (155)
T TIGR00176 78 RDLEALLDRLPDLDIILVEGFKD-SPLPKIVVFR 110 (155)
T ss_pred cCHHHHHhhCCCCCEEEECCCCC-CCCCEEEEEe
Confidence 35566665555689999999885 4555555543
No 364
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.07 E-value=4.8e-10 Score=108.89 Aligned_cols=48 Identities=19% Similarity=0.299 Sum_probs=44.2
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEec
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILN 54 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~ 54 (184)
+++|+++||++++|+.++|+|++|||||||++.|+|..++.+|.|..+
T Consensus 651 ~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~ 698 (1522)
T TIGR00957 651 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMK 698 (1522)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEEC
Confidence 579999999999999999999999999999999999988877777664
No 365
>KOG0056|consensus
Probab=99.06 E-value=2.5e-10 Score=97.62 Aligned_cols=52 Identities=17% Similarity=0.234 Sum_probs=45.8
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEeccc
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEF 56 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~ 56 (184)
.++++|+||||++++|+.++++||+|+||||++|.|.+...-.+|.|..++.
T Consensus 549 p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgq 600 (790)
T KOG0056|consen 549 PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQ 600 (790)
T ss_pred CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCc
Confidence 4689999999999999999999999999999999999987666677776554
No 366
>PLN03232 ABC transporter C family member; Provisional
Probab=99.06 E-value=6.8e-10 Score=107.70 Aligned_cols=46 Identities=22% Similarity=0.269 Sum_probs=41.1
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEE
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAV 51 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~v 51 (184)
++++|+|+||++++|+.++|+|++|||||||++.|+|...+.+|.+
T Consensus 629 ~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i 674 (1495)
T PLN03232 629 SKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSS 674 (1495)
T ss_pred CCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCE
Confidence 3679999999999999999999999999999999999877655433
No 367
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.05 E-value=9.7e-10 Score=96.67 Aligned_cols=50 Identities=24% Similarity=0.201 Sum_probs=43.5
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEe
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVIL 53 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~ 53 (184)
+++...+++.+|++++|+-+.|.|++|+|||||+|.|+|..+-++|.|..
T Consensus 403 p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~ 452 (604)
T COG4178 403 PDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISM 452 (604)
T ss_pred CCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceec
Confidence 45568999999999999999999999999999999999987666665544
No 368
>PLN03130 ABC transporter C family member; Provisional
Probab=99.04 E-value=1e-09 Score=106.98 Aligned_cols=48 Identities=21% Similarity=0.349 Sum_probs=43.1
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCe-EEEEe
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKK-IAVIL 53 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~-~~vi~ 53 (184)
++++|+|+||++++|+.++|+|++|||||||++.|+|...+.+ |.|..
T Consensus 629 ~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l 677 (1622)
T PLN03130 629 ERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI 677 (1622)
T ss_pred CCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE
Confidence 3679999999999999999999999999999999999987777 66654
No 369
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.03 E-value=1.3e-09 Score=84.39 Aligned_cols=33 Identities=27% Similarity=0.186 Sum_probs=29.8
Q ss_pred CCccccceecCc-cEEEEEecCCChHHHHHHHHH
Q psy7718 9 VPDLVPAELQPV-PVTIITGYLGAGKTTLLNYIL 41 (184)
Q Consensus 9 ~l~~v~l~v~~~-~vi~i~G~~GsGKTTll~~L~ 41 (184)
.+-++||++.++ ++++|+||||+|||||++.+.
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence 455899999999 589999999999999999988
No 370
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.02 E-value=2e-09 Score=87.89 Aligned_cols=49 Identities=22% Similarity=0.206 Sum_probs=41.6
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCC-C----CeEEEEecc
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQH-D----KKIAVILNE 55 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~-~----~~~~vi~~~ 55 (184)
-.+++||||++++|++++|+|-+||||||+.+.+++..+ + ..|.|+.++
T Consensus 18 v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g 71 (316)
T COG0444 18 VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDG 71 (316)
T ss_pred EEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECC
Confidence 469999999999999999999999999999999999765 2 234566654
No 371
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.02 E-value=2e-09 Score=83.24 Aligned_cols=36 Identities=25% Similarity=0.296 Sum_probs=32.0
Q ss_pred CCC-ccccceecCccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 8 EVP-DLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 8 ~~l-~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
.-+ ++++|++.++ +++|+|+||||||||++.|.+..
T Consensus 10 r~~~~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~ 46 (197)
T cd03278 10 KSFADKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVL 46 (197)
T ss_pred cCcCCCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHh
Confidence 345 7789999999 99999999999999999998764
No 372
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.00 E-value=1.6e-09 Score=80.78 Aligned_cols=121 Identities=18% Similarity=0.149 Sum_probs=79.5
Q ss_pred CCCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEe--cccCCcc---------cccceeEecCC
Q psy7718 3 SDSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVIL--NEFGEGS---------AMEKSVSVGDN 71 (184)
Q Consensus 3 ~~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~--~~~~~~~---------~~~~~~~~~~~ 71 (184)
.|+...+|-||+|+-..|+.+.+.||+|+|||||+|.|.-...|.+|.... +.|.-.. ..++..-++|.
T Consensus 11 ~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqq 90 (242)
T COG4161 11 FYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQ 90 (242)
T ss_pred ccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhh
Confidence 467788999999999999999999999999999999987665555554433 4443211 11223346777
Q ss_pred CchhhhhhhhcCccee-ccccc----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCC
Q psy7718 72 GNLYEEWLELKNGCLC-CSVKD----NGVKAIENLMLK----------------------------RGKFDYILL-ETTG 117 (184)
Q Consensus 72 ~~l~~~~~~l~~gci~-~~~~~----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg 117 (184)
..+++.++..+|.--. |...+ .......+++++ .-.|++++. |||.
T Consensus 91 y~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdepta 170 (242)
T COG4161 91 YNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTA 170 (242)
T ss_pred hccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCccc
Confidence 6777888888775311 22211 111111222221 147888888 9999
Q ss_pred CCCChh
Q psy7718 118 LADPGP 123 (184)
Q Consensus 118 ~~dp~~ 123 (184)
..||+-
T Consensus 171 aldpei 176 (242)
T COG4161 171 ALDPEI 176 (242)
T ss_pred ccCHHH
Confidence 999973
No 373
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.96 E-value=7.7e-10 Score=83.06 Aligned_cols=51 Identities=20% Similarity=0.263 Sum_probs=46.3
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccC
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFG 57 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~ 57 (184)
-+||+++||+++.|+.+++.|++||||||++|.|-+.+.++.|.|++...+
T Consensus 24 LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g 74 (235)
T COG4778 24 LPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEG 74 (235)
T ss_pred eeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCc
Confidence 579999999999999999999999999999999999988888888775444
No 374
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.96 E-value=3.6e-09 Score=78.07 Aligned_cols=89 Identities=19% Similarity=0.141 Sum_probs=64.4
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCC---CeEEEEecccCCcc--c-ccceeEecCCCchhhhhh
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHD---KKIAVILNEFGEGS--A-MEKSVSVGDNGNLYEEWL 79 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~---~~~~vi~~~~~~~~--~-~~~~~~~~~~~~l~~~~~ 79 (184)
+.-.|-++||++.+|+|+.+.||+|+|||||+.-+.|...+ -.+.+..++..-.. . .+.....+|+..+++++.
T Consensus 14 g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphls 93 (213)
T COG4136 14 GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLS 93 (213)
T ss_pred CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccc
Confidence 45578899999999999999999999999999999997644 35666666543221 1 123345788888888888
Q ss_pred hhcCcceec--ccccch
Q psy7718 80 ELKNGCLCC--SVKDNG 94 (184)
Q Consensus 80 ~l~~gci~~--~~~~~~ 94 (184)
...|..+.- ++++..
T Consensus 94 Vg~Nl~fAlp~~~KG~a 110 (213)
T COG4136 94 VGQNLLFALPATLKGNA 110 (213)
T ss_pred cccceEEecCcccccHH
Confidence 888875442 445443
No 375
>KOG0927|consensus
Probab=98.95 E-value=2.2e-09 Score=92.62 Aligned_cols=44 Identities=27% Similarity=0.172 Sum_probs=39.5
Q ss_pred CCCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCC
Q psy7718 3 SDSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHD 46 (184)
Q Consensus 3 ~~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~ 46 (184)
++.+..++++++|++.+|+.++|+|+|||||||+|+.+.+...|
T Consensus 84 s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P 127 (614)
T KOG0927|consen 84 SFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVP 127 (614)
T ss_pred ccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCC
Confidence 35678899999999999999999999999999999999986544
No 376
>KOG0055|consensus
Probab=98.94 E-value=2.1e-09 Score=100.19 Aligned_cols=81 Identities=14% Similarity=0.085 Sum_probs=61.5
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccC--Cc---ccccceeEecCCCchhhhhhh
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFG--EG---SAMEKSVSVGDNGNLYEEWLE 80 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~--~~---~~~~~~~~~~~~~~l~~~~~~ 80 (184)
+.++|+|+||++++|+-++|+||+||||||.|.+|-+...|..|.|..++.. +- ........+.|+|.++... -
T Consensus 1002 ~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~T-I 1080 (1228)
T KOG0055|consen 1002 DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGT-I 1080 (1228)
T ss_pred CchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhccc-H
Confidence 3569999999999999999999999999999999999988888888875432 21 1223344678888877543 4
Q ss_pred hcCccee
Q psy7718 81 LKNGCLC 87 (184)
Q Consensus 81 l~~gci~ 87 (184)
.+|.|+-
T Consensus 1081 rENI~YG 1087 (1228)
T KOG0055|consen 1081 RENIAYG 1087 (1228)
T ss_pred HHHHhcc
Confidence 5665544
No 377
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.93 E-value=2e-09 Score=75.11 Aligned_cols=36 Identities=25% Similarity=0.201 Sum_probs=33.9
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHH
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYIL 41 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~ 41 (184)
++.+|++++|++.+++.++|.|++|||||||++.+.
T Consensus 1 ~~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 1 GTTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 357899999999999999999999999999999987
No 378
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=98.91 E-value=2.8e-09 Score=79.69 Aligned_cols=95 Identities=14% Similarity=0.238 Sum_probs=58.7
Q ss_pred ccEEEEEecCCChHHHHHHHHHhcC--CCCeEEEEecccCCcc---cccceeEecCCCchhhhhhhhcCcceecccccch
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTEQ--HDKKIAVILNEFGEGS---AMEKSVSVGDNGNLYEEWLELKNGCLCCSVKDNG 94 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~~--~~~~~~vi~~~~~~~~---~~~~~~~~~~~~~l~~~~~~l~~gci~~~~~~~~ 94 (184)
.++++|+|+++||||||+..|+... ++.+++++.|..+... ...+++...+.++ ..+...+..-...+.+..
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh~~~~D~~GkDs~r~~~aGa---~~~v~~s~~~~~~~~~~~ 78 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAHHDFDLDKPGKDTYRHRKAGA---DQVVVASDHRTALMTRTP 78 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecCCCCCCCCCCCccchhhcccc---ceEEEecCCEEEEEEecC
Confidence 5799999999999999999998753 6778999997766522 2334555555443 112222222222221111
Q ss_pred HHHHHHHHHHcCC-CCEEEEccCC
Q psy7718 95 VKAIENLMLKRGK-FDYILLETTG 117 (184)
Q Consensus 95 ~~~l~~ll~~~~~-~d~iiiE~tg 117 (184)
...|..++++... .|++++|...
T Consensus 79 ~~~L~~vl~~l~~~~D~vLVEGFK 102 (161)
T COG1763 79 DRDLDAVLSRLDPLLDLVLVEGFK 102 (161)
T ss_pred CcCHHHHHHhcCcccCEEEEeccc
Confidence 1445555554433 4999999987
No 379
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.91 E-value=2.6e-09 Score=82.74 Aligned_cols=32 Identities=28% Similarity=0.137 Sum_probs=27.6
Q ss_pred ccccceecCccEEEEEecCCChHHHHHHHHHh
Q psy7718 11 DLVPAELQPVPVTIITGYLGAGKTTLLNYILT 42 (184)
Q Consensus 11 ~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~ 42 (184)
-..++++.++++++|+|+||||||||++.+.+
T Consensus 20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred EeeeEEEcCCeEEEEECCCCCccHHHHHHHHH
Confidence 44566677889999999999999999999984
No 380
>KOG0062|consensus
Probab=98.89 E-value=2.1e-09 Score=92.21 Aligned_cols=40 Identities=23% Similarity=0.152 Sum_probs=37.4
Q ss_pred CCCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHh
Q psy7718 3 SDSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILT 42 (184)
Q Consensus 3 ~~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~ 42 (184)
+++++.+|++-++++.+|..++++|+||+|||||+|.|..
T Consensus 89 a~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 89 AYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred eecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence 3667889999999999999999999999999999999986
No 381
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.87 E-value=1.3e-08 Score=80.80 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=29.6
Q ss_pred CCCCCCCCccccceecCccEEEEEecCCChHHHHHHHHH
Q psy7718 3 SDSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYIL 41 (184)
Q Consensus 3 ~~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~ 41 (184)
+|.+..++++++ +.+++|+||||||||||++.|.
T Consensus 11 sy~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~ 44 (243)
T cd03272 11 SYKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIR 44 (243)
T ss_pred CcccCcccccCC-----CCcEEEECCCCCCHHHHHHHHH
Confidence 466677888876 6799999999999999999997
No 382
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.86 E-value=3.1e-09 Score=80.75 Aligned_cols=49 Identities=22% Similarity=0.249 Sum_probs=46.2
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
..+++.|||++.++..++|+|.||||||||.++|.|...|.+|.+++|+
T Consensus 26 ~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~ 74 (267)
T COG4167 26 VEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILIND 74 (267)
T ss_pred hhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECC
Confidence 4589999999999999999999999999999999999999999999976
No 383
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.85 E-value=5.7e-09 Score=81.18 Aligned_cols=39 Identities=26% Similarity=0.211 Sum_probs=35.4
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhc
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.+..++++++|+..++++++|+|+||+||||+++.+.+.
T Consensus 14 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 14 KKNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred CCcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 456799999999999999999999999999999998753
No 384
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.84 E-value=1.2e-08 Score=83.80 Aligned_cols=51 Identities=31% Similarity=0.264 Sum_probs=43.2
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcC--CCCeEEEEecccC
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQ--HDKKIAVILNEFG 57 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~--~~~~~~vi~~~~~ 57 (184)
..++++++++..++++++|+|++|||||||++.+.... .+.++.++..|..
T Consensus 21 ~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~ 73 (300)
T TIGR00750 21 KQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPS 73 (300)
T ss_pred HHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 45789999999999999999999999999999998753 4567888776654
No 385
>KOG0065|consensus
Probab=98.82 E-value=7.8e-09 Score=96.85 Aligned_cols=87 Identities=18% Similarity=0.216 Sum_probs=67.2
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCC--CeEEEEecccCCc--ccccceeEecCCCchhhhhhh
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHD--KKIAVILNEFGEG--SAMEKSVSVGDNGNLYEEWLE 80 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~--~~~~vi~~~~~~~--~~~~~~~~~~~~~~l~~~~~~ 80 (184)
+.+.+|+||+=-+++|..+++.|.+|||||||++.|++.... ..|.|.++++-.. ...+...++.|...-.+++++
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TV 881 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTV 881 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccch
Confidence 447799999999999999999999999999999999987543 3567777776543 344556677776554567888
Q ss_pred hcCcceecccc
Q psy7718 81 LKNGCLCCSVK 91 (184)
Q Consensus 81 l~~gci~~~~~ 91 (184)
.+..-+.|.+|
T Consensus 882 rESL~fSA~LR 892 (1391)
T KOG0065|consen 882 RESLRFSAALR 892 (1391)
T ss_pred HHHHHHHHHHc
Confidence 88877777765
No 386
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=98.81 E-value=6.4e-09 Score=78.75 Aligned_cols=40 Identities=25% Similarity=0.405 Sum_probs=32.4
Q ss_pred cCccEEEEEecCCChHHHHHHHHHhcCC--CCeEEEEecccC
Q psy7718 18 QPVPVTIITGYLGAGKTTLLNYILTEQH--DKKIAVILNEFG 57 (184)
Q Consensus 18 ~~~~vi~i~G~~GsGKTTll~~L~~~~~--~~~~~vi~~~~~ 57 (184)
.+.++++|+|++|||||||++.|++... +.+++++.++.+
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~~ 45 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence 3567999999999999999999998653 457788876544
No 387
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.77 E-value=9.2e-09 Score=81.96 Aligned_cols=96 Identities=24% Similarity=0.367 Sum_probs=52.2
Q ss_pred CccEEEEEecCCChHHHHHHHHHhcC--CCCeEEEEecccCC----cccccceeEecC----CCchhhhhhhhcCcceec
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTEQ--HDKKIAVILNEFGE----GSAMEKSVSVGD----NGNLYEEWLELKNGCLCC 88 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~~--~~~~~~vi~~~~~~----~~~~~~~~~~~~----~~~l~~~~~~l~~gci~~ 88 (184)
+..+++|+|+.|+|||||+..|.... .+.+++|+.-|.+. +++..++++|.. .+.+...+....+
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~----- 102 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGS----- 102 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SS-----
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCC-----
Confidence 45699999999999999999998753 57789998866543 344444443321 1111111111110
Q ss_pred ccccchHH---HHHHHHHHcCCCCEEEEccCCCCCCh
Q psy7718 89 SVKDNGVK---AIENLMLKRGKFDYILLETTGLADPG 122 (184)
Q Consensus 89 ~~~~~~~~---~l~~ll~~~~~~d~iiiE~tg~~dp~ 122 (184)
+ +.+.. ..-++++ ...+|+||+|+.|.++.+
T Consensus 103 -l-GGls~~t~~~v~ll~-aaG~D~IiiETVGvGQsE 136 (266)
T PF03308_consen 103 -L-GGLSRATRDAVRLLD-AAGFDVIIIETVGVGQSE 136 (266)
T ss_dssp -H-HHHHHHHHHHHHHHH-HTT-SEEEEEEESSSTHH
T ss_pred -C-CCccHhHHHHHHHHH-HcCCCEEEEeCCCCCccH
Confidence 1 11222 2334443 468999999999998854
No 388
>KOG0054|consensus
Probab=98.75 E-value=4.5e-08 Score=93.05 Aligned_cols=53 Identities=17% Similarity=0.204 Sum_probs=47.5
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccC
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFG 57 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~ 57 (184)
+...||++|||++++++.+||+|.-|||||||+..|-+...+..|.|..++..
T Consensus 1151 ~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvd 1203 (1381)
T KOG0054|consen 1151 NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVD 1203 (1381)
T ss_pred CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCee
Confidence 34679999999999999999999999999999999999888788888886654
No 389
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.74 E-value=4.9e-08 Score=75.87 Aligned_cols=28 Identities=36% Similarity=0.490 Sum_probs=23.1
Q ss_pred ccceecCccEEEEEecCCChHHHHHHHHH
Q psy7718 13 VPAELQPVPVTIITGYLGAGKTTLLNYIL 41 (184)
Q Consensus 13 v~l~v~~~~vi~i~G~~GsGKTTll~~L~ 41 (184)
.++++.++ +++|+|+||||||||++.|.
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 34455555 99999999999999999984
No 390
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.74 E-value=2.3e-08 Score=80.94 Aligned_cols=107 Identities=23% Similarity=0.325 Sum_probs=64.9
Q ss_pred CCCccccceecCccEEEEEecCCChHHHHHHHHHhc--CCCCeEEEEecccCC----cccccceeEecC----CCchhhh
Q psy7718 8 EVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTE--QHDKKIAVILNEFGE----GSAMEKSVSVGD----NGNLYEE 77 (184)
Q Consensus 8 ~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~--~~~~~~~vi~~~~~~----~~~~~~~~~~~~----~~~l~~~ 77 (184)
++|.-+.-.-.+..+++|||+.|+|||||+..|... ..+.+++|+.-|.+. +++..+.++|.. .+.+...
T Consensus 39 ~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs 118 (323)
T COG1703 39 ELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRS 118 (323)
T ss_pred HHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEee
Confidence 344444444556679999999999999999999875 367889998866553 344444443322 1111111
Q ss_pred hhhhcCcceecccccchHHH---HHHHHHHcCCCCEEEEccCCCCCCh
Q psy7718 78 WLELKNGCLCCSVKDNGVKA---IENLMLKRGKFDYILLETTGLADPG 122 (184)
Q Consensus 78 ~~~l~~gci~~~~~~~~~~~---l~~ll~~~~~~d~iiiE~tg~~dp~ 122 (184)
+.. .| ++ +....+ +-.+++ ...+|+||||+.|.++.+
T Consensus 119 ~~s--rG----~l-GGlS~at~~~i~~ld-AaG~DvIIVETVGvGQse 158 (323)
T COG1703 119 SPS--RG----TL-GGLSRATREAIKLLD-AAGYDVIIVETVGVGQSE 158 (323)
T ss_pred cCC--Cc----cc-hhhhHHHHHHHHHHH-hcCCCEEEEEecCCCcch
Confidence 110 00 11 222222 223343 468999999999999865
No 391
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.72 E-value=1e-08 Score=80.81 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=30.6
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHH
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLL 37 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll 37 (184)
.+..+|++|||++++|++++|+|+||||||||+
T Consensus 6 ~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 6 AREHNLKNVDVDIPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred chhhccccceeecCCCcEEEEEcCCCCCHHHHH
Confidence 346799999999999999999999999999996
No 392
>KOG0066|consensus
Probab=98.71 E-value=6e-08 Score=82.45 Aligned_cols=49 Identities=16% Similarity=0.154 Sum_probs=43.0
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEe
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVIL 53 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~ 53 (184)
+.+++|..++|-+.....++|+||||.|||||++.|+|...|..+....
T Consensus 598 gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RK 646 (807)
T KOG0066|consen 598 GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRK 646 (807)
T ss_pred CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhc
Confidence 5688999999999999999999999999999999999987776555444
No 393
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.68 E-value=4.8e-08 Score=76.96 Aligned_cols=36 Identities=25% Similarity=0.222 Sum_probs=34.1
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHh
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILT 42 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~ 42 (184)
..+.++++|.+.++++++|+|+||+||||+++.+.+
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHH
Confidence 568899999999999999999999999999999987
No 394
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.68 E-value=2.7e-08 Score=78.05 Aligned_cols=36 Identities=28% Similarity=0.327 Sum_probs=32.1
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHh
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILT 42 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~ 42 (184)
...+.++++|+.++ ++++|+|+|||||||+++.+..
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHH
Confidence 34588999999887 8999999999999999999975
No 395
>KOG0927|consensus
Probab=98.67 E-value=3.9e-08 Score=84.96 Aligned_cols=47 Identities=21% Similarity=0.157 Sum_probs=42.4
Q ss_pred CCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEec
Q psy7718 8 EVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILN 54 (184)
Q Consensus 8 ~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~ 54 (184)
.++++++|-+.....++++||||+||||||+.+++...|..|.|..+
T Consensus 404 ~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~ 450 (614)
T KOG0927|consen 404 MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRH 450 (614)
T ss_pred hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccc
Confidence 58899999999999999999999999999999999988877776653
No 396
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.67 E-value=2.1e-08 Score=84.07 Aligned_cols=48 Identities=15% Similarity=0.155 Sum_probs=44.6
Q ss_pred CCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 8 EVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 8 ~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
.-+..||+++++|+++-++|.|||||||+++.|+|..+|.+|.|..|+
T Consensus 337 FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg 384 (546)
T COG4615 337 FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDG 384 (546)
T ss_pred ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECC
Confidence 457889999999999999999999999999999999999999999865
No 397
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.67 E-value=5.3e-08 Score=80.89 Aligned_cols=102 Identities=18% Similarity=0.161 Sum_probs=59.1
Q ss_pred cCccEEEEEecCCChHHHHHHHHHhcC--CCCeEEEEecccCCc----ccccceeEecCCCchhhhhhhhcCcceecccc
Q psy7718 18 QPVPVTIITGYLGAGKTTLLNYILTEQ--HDKKIAVILNEFGEG----SAMEKSVSVGDNGNLYEEWLELKNGCLCCSVK 91 (184)
Q Consensus 18 ~~~~vi~i~G~~GsGKTTll~~L~~~~--~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~l~~~~~~l~~gci~~~~~ 91 (184)
.+..+++|+|++|||||||++.|.... .+.++.|+..|.... +...+...+.+-.. .+.....+-+ -||.+.
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~-~~~~~~r~~~-~~~~l~ 131 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSR-HPNAFIRPSP-SSGTLG 131 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcC-CCCeEEEecC-Cccccc
Confidence 345589999999999999999988753 466888888876542 12222222211000 0111111111 155554
Q ss_pred cc--hHHHHHHHHHHcCCCCEEEEccCCCCCCh
Q psy7718 92 DN--GVKAIENLMLKRGKFDYILLETTGLADPG 122 (184)
Q Consensus 92 ~~--~~~~l~~ll~~~~~~d~iiiE~tg~~dp~ 122 (184)
+. ......+++. ...+|++++|+.|..+.+
T Consensus 132 ~~a~~~~~~~~~~~-~~g~d~viieT~Gv~qs~ 163 (332)
T PRK09435 132 GVARKTRETMLLCE-AAGYDVILVETVGVGQSE 163 (332)
T ss_pred chHHHHHHHHHHHh-ccCCCEEEEECCCCccch
Confidence 32 1222223333 468999999999998654
No 398
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.66 E-value=8.6e-08 Score=73.37 Aligned_cols=46 Identities=24% Similarity=0.312 Sum_probs=36.9
Q ss_pred CccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 10 PDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 10 l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
.+-+.+.++++..++|+|++|||||||++.|++..++..+.+...+
T Consensus 15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied 60 (186)
T cd01130 15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIED 60 (186)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECC
Confidence 3445677889999999999999999999999998766555555544
No 399
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.65 E-value=2.1e-08 Score=84.50 Aligned_cols=38 Identities=39% Similarity=0.493 Sum_probs=35.8
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhc
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.+.++++++|++++|++++|+|.+||||||++++++|.
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~ 432 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGA 432 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHH
Confidence 46799999999999999999999999999999999985
No 400
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.65 E-value=7.9e-08 Score=80.86 Aligned_cols=47 Identities=19% Similarity=0.130 Sum_probs=41.1
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEec
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILN 54 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~ 54 (184)
..++++|||++++|+.++|+|.+|||||||-..|++...+. |.|.+.
T Consensus 300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~ 346 (534)
T COG4172 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFD 346 (534)
T ss_pred eEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEEC
Confidence 45899999999999999999999999999999999986554 666664
No 401
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=98.63 E-value=4.1e-08 Score=83.69 Aligned_cols=123 Identities=17% Similarity=0.154 Sum_probs=68.5
Q ss_pred cEEEEEecCCChHHHHHHHHHhcC--CCCeEEEEecccCCccc---ccceeEecCCCchhhhhhhhcCcceeccc-ccch
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTEQ--HDKKIAVILNEFGEGSA---MEKSVSVGDNGNLYEEWLELKNGCLCCSV-KDNG 94 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~~--~~~~~~vi~~~~~~~~~---~~~~~~~~~~~~l~~~~~~l~~gci~~~~-~~~~ 94 (184)
++++|+|++|||||||+..|+... ++.++++++|+.+.... ..++....+.++ ..+...+........ ....
T Consensus 2 kVi~IvG~sgSGKTTLiekLI~~L~~rG~rVavIKH~hH~fd~D~~GKDS~r~r~AGA--~~V~v~s~~r~al~~~~~~~ 79 (452)
T PRK14495 2 RVYGIIGWKDAGKTGLVERLVAAIAARGFSVSTVKHSHHDVDPDPPGSDSHRHRAAGA--AEVVLAGPRRLILTREHRGE 79 (452)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeccCcccCCCCCCCCchhHHhCCC--CEEEEEcCCeEEEEEecCCC
Confidence 689999999999999999999864 56799999976554221 122333333333 111111111111100 0011
Q ss_pred HHHHHHHHHHcCCCCEEEEccCCCCCChhHHHHhhhccccCCc-e--EeCcEEEEEc
Q psy7718 95 VKAIENLMLKRGKFDYILLETTGLADPGPIAKVFWLDKELGSD-I--YLDGIVTVVD 148 (184)
Q Consensus 95 ~~~l~~ll~~~~~~d~iiiE~tg~~dp~~i~~~l~~~~~~~~~-~--~l~~vi~vvD 148 (184)
...+.+++......|+||+|...-.. .+..+++ +....+. + .-+++++|+-
T Consensus 80 ~~~L~~ll~~l~~~DlVLVEGfK~~~-~PKIeV~--R~~~~~~~l~~~d~~iiAVat 133 (452)
T PRK14495 80 PPRLAAILERMAPVDLVLVEGYKTEP-HPKIEVF--RKAAGHALRQPEDPWVRAVAS 133 (452)
T ss_pred CcCHHHHHhhcccCCEEEEecccCCC-CCEEEEE--ccCCCCCCcCCCCCCEEEEEe
Confidence 13455665544568999999987643 3444443 2333322 1 1356777773
No 402
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.63 E-value=2.9e-08 Score=78.21 Aligned_cols=36 Identities=28% Similarity=0.199 Sum_probs=33.1
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHH
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYIL 41 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~ 41 (184)
...+.++++|+..++++++|+|+||+||||+++.+.
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~ 51 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIG 51 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHH
Confidence 356899999999999999999999999999999976
No 403
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.61 E-value=2.6e-08 Score=85.70 Aligned_cols=45 Identities=18% Similarity=0.248 Sum_probs=37.0
Q ss_pred CCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeE-EEEec
Q psy7718 8 EVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKI-AVILN 54 (184)
Q Consensus 8 ~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~-~vi~~ 54 (184)
++|++|||++.+|++++|+|++|||||||++ .+...+..+ .|..+
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ld 65 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLD 65 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEEC
Confidence 5799999999999999999999999999999 454445444 45553
No 404
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.59 E-value=1.9e-07 Score=73.05 Aligned_cols=36 Identities=25% Similarity=0.243 Sum_probs=27.1
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHh
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILT 42 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~ 42 (184)
..|-+++++.-....+++|+|+||+|||||+|.+..
T Consensus 16 ~~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 16 SFVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEcceEEecCCCceEEEEECCCCCChHHHHHHHHH
Confidence 345555655433337899999999999999999873
No 405
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.58 E-value=3.2e-07 Score=83.18 Aligned_cols=127 Identities=14% Similarity=0.117 Sum_probs=72.4
Q ss_pred CCccccceecCccEEEEEecCCChHHHHHHHHHhcC---CC-CeEEEEecccCCcccccceeEecCCCchhhhhhhhcCc
Q psy7718 9 VPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQ---HD-KKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLELKNG 84 (184)
Q Consensus 9 ~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~---~~-~~~~vi~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g 84 (184)
+++++++.+.++.+++|+||||+||||++.+|++.. .+ .++.++..|...... ..| ........+.
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA------~eQ----L~~~a~~~gv 243 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGA------LEQ----LRIYGRILGV 243 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHH------HHH----HHHHHHhCCC
Confidence 567788888888999999999999999999999754 22 366666544322110 000 0011111111
Q ss_pred ceecccccchHHHHHHHHHHcCCCCEEEEccCCCCCCh-hHHHHhhhccccCCceEeCcEEEEEcCCC
Q psy7718 85 CLCCSVKDNGVKAIENLMLKRGKFDYILLETTGLADPG-PIAKVFWLDKELGSDIYLDGIVTVVDCKH 151 (184)
Q Consensus 85 ci~~~~~~~~~~~l~~ll~~~~~~d~iiiE~tg~~dp~-~i~~~l~~~~~~~~~~~l~~vi~vvDa~~ 151 (184)
-+. .. .+ ...+.+.+....+.|+|||-+.|..+-. .+.+.+.. +.....-..++.|+|+.+
T Consensus 244 pv~-~~-~~-~~~l~~al~~~~~~D~VLIDTAGRs~~d~~l~eel~~---l~~~~~p~e~~LVLsAt~ 305 (767)
T PRK14723 244 PVH-AV-KD-AADLRFALAALGDKHLVLIDTVGMSQRDRNVSEQIAM---LCGVGRPVRRLLLLNAAS 305 (767)
T ss_pred Ccc-cc-CC-HHHHHHHHHHhcCCCEEEEeCCCCCccCHHHHHHHHH---HhccCCCCeEEEEECCCC
Confidence 010 01 11 2234455555567899999999976533 23433321 122223335788999874
No 406
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.58 E-value=4.6e-08 Score=76.51 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=30.7
Q ss_pred CCCCCCCCccccceecCccEEEEEecCCChHHHHHHHHH
Q psy7718 3 SDSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYIL 41 (184)
Q Consensus 3 ~~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~ 41 (184)
++.+..++++++| ++++|+|||||||||+++.|.
T Consensus 13 ~~~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~ 46 (212)
T cd03274 13 SYAGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML 46 (212)
T ss_pred cCCCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHH
Confidence 4677889999987 799999999999999999987
No 407
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=98.54 E-value=6.2e-08 Score=72.52 Aligned_cols=127 Identities=24% Similarity=0.218 Sum_probs=63.7
Q ss_pred cEEEEEecCCChHHHHHHHHHhcC--CCCeEEEEecccCCcccc---cceeEecCCCchhhhhhhhcCcc--eecccccc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTEQ--HDKKIAVILNEFGEGSAM---EKSVSVGDNGNLYEEWLELKNGC--LCCSVKDN 93 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~~--~~~~~~vi~~~~~~~~~~---~~~~~~~~~~~l~~~~~~l~~gc--i~~~~~~~ 93 (184)
++++|+|++||||||+++.|.... .+.+++++.++.+....+ .+.....+.++ +.+...+.+- +.......
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~~~~~~~~d~~g~Ds~~~~~aGa--~~v~~~~~~~~~~~~~~~~~ 79 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKHDHHDFDIDTPGKDSYRHREAGA--EEVLVSSPRRWALIRELRDE 79 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCCcccccCccchHHHHHHcCC--CEEEEecCCeEEEEEEcCCC
Confidence 689999999999999999999864 345678887654432110 01111111111 0000000000 00000011
Q ss_pred hHHHHHHHHHHcCCCCEEEEccCCCCCChhHHHHhhhccccCC-ceEeCcEEEEEcCCC
Q psy7718 94 GVKAIENLMLKRGKFDYILLETTGLADPGPIAKVFWLDKELGS-DIYLDGIVTVVDCKH 151 (184)
Q Consensus 94 ~~~~l~~ll~~~~~~d~iiiE~tg~~dp~~i~~~l~~~~~~~~-~~~l~~vi~vvDa~~ 151 (184)
....+. ++......|+|++|+.+-+ |.+..++++....... .....++++++-...
T Consensus 80 ~~~~~~-~~~~~~~~D~vlvEG~k~~-~~pkI~v~r~~~~~~~~~~~~~~~~Av~~~~~ 136 (159)
T cd03116 80 PEPDLL-LLLRLLDVDLVLVEGFKEE-PIPKIEVHRPELGKPLLLPEDPNVVAVATDEP 136 (159)
T ss_pred ccccHH-HHhhCCCCCEEEEccCCCC-CCCEEEEEcCcCCCccccCCCCCEEEEEeCCc
Confidence 111111 2333457899999999876 5555555432211111 123577888876543
No 408
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.54 E-value=2.6e-07 Score=72.16 Aligned_cols=32 Identities=28% Similarity=0.319 Sum_probs=26.9
Q ss_pred ccccceec-CccEEEEEecCCChHHHHHHHHHh
Q psy7718 11 DLVPAELQ-PVPVTIITGYLGAGKTTLLNYILT 42 (184)
Q Consensus 11 ~~v~l~v~-~~~vi~i~G~~GsGKTTll~~L~~ 42 (184)
.+++|... ++++++|+|+|||||||+++.|..
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~ 50 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITY 50 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHhee
Confidence 45666644 488999999999999999999984
No 409
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.49 E-value=2.1e-07 Score=71.22 Aligned_cols=20 Identities=45% Similarity=0.443 Sum_probs=18.4
Q ss_pred EEEEEecCCChHHHHHHHHH
Q psy7718 22 VTIITGYLGAGKTTLLNYIL 41 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~ 41 (184)
+++|+|+||+||||++|.+.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred CEEEECCCCCcHHHHHHHHH
Confidence 46899999999999999997
No 410
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.47 E-value=3.3e-07 Score=72.02 Aligned_cols=38 Identities=29% Similarity=0.294 Sum_probs=34.5
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhc
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
...+.++++|..+++++++|+|+||+||||+++.+...
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~ 53 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLA 53 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHH
Confidence 45789999999999999999999999999999998753
No 411
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.45 E-value=4.8e-07 Score=74.63 Aligned_cols=43 Identities=23% Similarity=0.378 Sum_probs=34.5
Q ss_pred ccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 13 VPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 13 v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
+++.++.+..++|+|++|||||||++.|++..++....+...+
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied 179 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED 179 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC
Confidence 5677889999999999999999999999998765444444433
No 412
>KOG0060|consensus
Probab=98.45 E-value=1.2e-06 Score=76.56 Aligned_cols=49 Identities=20% Similarity=0.129 Sum_probs=42.3
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEec
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILN 54 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~ 54 (184)
+..+++++||++..|.-..|+||||+|||+|+|.|.+..+-.+|.+...
T Consensus 447 g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~ 495 (659)
T KOG0060|consen 447 GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKP 495 (659)
T ss_pred CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEec
Confidence 5667889999999999999999999999999999999876555655543
No 413
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.42 E-value=2.2e-06 Score=71.00 Aligned_cols=39 Identities=23% Similarity=0.334 Sum_probs=30.6
Q ss_pred cCccEEEEEecCCChHHHHHHHHHhcC--CCCeEEEEeccc
Q psy7718 18 QPVPVTIITGYLGAGKTTLLNYILTEQ--HDKKIAVILNEF 56 (184)
Q Consensus 18 ~~~~vi~i~G~~GsGKTTll~~L~~~~--~~~~~~vi~~~~ 56 (184)
.++.+++++|+||+||||++..|++.. .+.++.++..|.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT 152 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence 467899999999999999999999864 345566655443
No 414
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.42 E-value=6.1e-07 Score=75.65 Aligned_cols=51 Identities=14% Similarity=0.157 Sum_probs=41.5
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCC-----CeEEEEecc
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHD-----KKIAVILNE 55 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~-----~~~~vi~~~ 55 (184)
+...++++|||++.+|+.++++|.+|||||-+.+.+++.... .++.|..++
T Consensus 21 ~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G 76 (534)
T COG4172 21 GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDG 76 (534)
T ss_pred cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcC
Confidence 446799999999999999999999999999999999986422 234555543
No 415
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.41 E-value=1.6e-06 Score=73.05 Aligned_cols=48 Identities=25% Similarity=0.250 Sum_probs=38.0
Q ss_pred CCCccccceecCccEEEEEecCCChHHHHHHHHHhcC---CC-CeEEEEecc
Q psy7718 8 EVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQ---HD-KKIAVILNE 55 (184)
Q Consensus 8 ~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~---~~-~~~~vi~~~ 55 (184)
.+++..++.+.++.+++|+||+|+||||++..|+... .+ .++.++..|
T Consensus 125 ~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D 176 (374)
T PRK14722 125 PVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTD 176 (374)
T ss_pred hhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecc
Confidence 4667788889999999999999999999999998742 23 466666543
No 416
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=5.2e-07 Score=76.23 Aligned_cols=52 Identities=17% Similarity=0.231 Sum_probs=46.5
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
...++.|+++||+++.|+.++++|++|+||||+++.|.+...+..|.|..++
T Consensus 273 ~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~ 324 (497)
T COG5265 273 DPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDG 324 (497)
T ss_pred cccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcc
Confidence 3457899999999999999999999999999999999998888788777754
No 417
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.41 E-value=4.2e-07 Score=83.27 Aligned_cols=104 Identities=21% Similarity=0.181 Sum_probs=56.1
Q ss_pred ccceecCc-cEEEEEecCCChHHHHHHHHHhc-CCCCeEEEEec-ccCCccccccee-EecCCCchhhhhhhhcCcceec
Q psy7718 13 VPAELQPV-PVTIITGYLGAGKTTLLNYILTE-QHDKKIAVILN-EFGEGSAMEKSV-SVGDNGNLYEEWLELKNGCLCC 88 (184)
Q Consensus 13 v~l~v~~~-~vi~i~G~~GsGKTTll~~L~~~-~~~~~~~vi~~-~~~~~~~~~~~~-~~~~~~~l~~~~~~l~~gci~~ 88 (184)
+++++.++ .+++|+||||+||||+++.+.+. ..+..|..+.. ......+..... .+.....+...+..++.
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i~~~i~~~~si~~~LStfS~----- 388 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEIFADIGDEQSIEQNLSTFSG----- 388 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhheeeecChHhHHhhhhhHHHH-----
Confidence 68888776 89999999999999999999875 22222211111 101111111111 11111111112222211
Q ss_pred ccccchHHHHHHHHHHcCCCCEEEE-ccCCCCCChhHHH
Q psy7718 89 SVKDNGVKAIENLMLKRGKFDYILL-ETTGLADPGPIAK 126 (184)
Q Consensus 89 ~~~~~~~~~l~~ll~~~~~~d~iii-E~tg~~dp~~i~~ 126 (184)
. ...+..++.....+.++++ |++.+.||..-..
T Consensus 389 ----~-m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~a 422 (771)
T TIGR01069 389 ----H-MKNISAILSKTTENSLVLFDELGAGTDPDEGSA 422 (771)
T ss_pred ----H-HHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHH
Confidence 1 1234455544457889999 9999999975443
No 418
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.38 E-value=8.2e-07 Score=66.43 Aligned_cols=30 Identities=37% Similarity=0.408 Sum_probs=23.7
Q ss_pred ccceecCccEEEEEecCCChHHHHHHHHHh
Q psy7718 13 VPAELQPVPVTIITGYLGAGKTTLLNYILT 42 (184)
Q Consensus 13 v~l~v~~~~vi~i~G~~GsGKTTll~~L~~ 42 (184)
.+....++.+++|+|||||||||+++.+.-
T Consensus 14 ~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~ 43 (162)
T cd03227 14 NDVTFGEGSLTIITGPNGSGKSTILDAIGL 43 (162)
T ss_pred cEEecCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 334444446999999999999999999764
No 419
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.37 E-value=5.4e-07 Score=56.65 Aligned_cols=40 Identities=38% Similarity=0.355 Sum_probs=31.5
Q ss_pred CCCCccccceecC-ccEEEEEecCCChHHHHHHHHHhcCCC
Q psy7718 7 SEVPDLVPAELQP-VPVTIITGYLGAGKTTLLNYILTEQHD 46 (184)
Q Consensus 7 ~~~l~~v~l~v~~-~~vi~i~G~~GsGKTTll~~L~~~~~~ 46 (184)
+-.+++.++++.+ ++++.|+|+|||||||++..+.-...+
T Consensus 9 w~~f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 9 WGSFDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred cCccCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3456667777775 469999999999999999998765433
No 420
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=98.37 E-value=4.2e-07 Score=76.69 Aligned_cols=126 Identities=17% Similarity=0.164 Sum_probs=66.9
Q ss_pred CccEEEEEecCCChHHHHHHHHHhcC--CCCeEEEEecccCCccc---ccceeEecCCCchhhhhhhhcCcceeccccc-
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTEQ--HDKKIAVILNEFGEGSA---MEKSVSVGDNGNLYEEWLELKNGCLCCSVKD- 92 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~~--~~~~~~vi~~~~~~~~~---~~~~~~~~~~~~l~~~~~~l~~gci~~~~~~- 92 (184)
+.++++|+|++|||||||++.|+... ++.+++++.|+.+.... ..++....+.++- .+...+.+. |...+.
T Consensus 204 ~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~h~~~~d~~g~Ds~r~~~aGa~--~v~~~~~~~-~~~~~~~ 280 (366)
T PRK14489 204 APPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKHSHHRVDIDKPGKDSHRLRAAGAN--PTMIVCPER-WALMRET 280 (366)
T ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEECCcccCCCCCCChhHHHHhCCCc--eEEEEcCCe-EEEEEeC
Confidence 35799999999999999999999864 46789999987654221 1122222333321 111111111 111111
Q ss_pred chH-HHHHHHHHHc--CCCCEEEEccCCCCCChhHHHHhhhccccCCc-e-EeCcEEEEEcCC
Q psy7718 93 NGV-KAIENLMLKR--GKFDYILLETTGLADPGPIAKVFWLDKELGSD-I-YLDGIVTVVDCK 150 (184)
Q Consensus 93 ~~~-~~l~~ll~~~--~~~d~iiiE~tg~~dp~~i~~~l~~~~~~~~~-~-~l~~vi~vvDa~ 150 (184)
... ..+.+++.+. ...|+|++|...-. |.+-.++.+ ...... . .-+.+++++...
T Consensus 281 ~~~~~~l~~~~~~~~~~~~D~vlvEG~k~~-~~pki~v~r--~~~~~~~~~~~~~~~a~~~d~ 340 (366)
T PRK14489 281 PEEAVPFKVLIATFDPEEVDLILVEGFKHE-PLPKIQLHR--QLISKPLPELDLWTIATATDY 340 (366)
T ss_pred CCCCcCHHHHHHhcCCcCCCEEEEcccccC-CCCeEEEec--cccCCCCCCCCCCEEEEEcCC
Confidence 001 1345555433 35799999997764 344444433 211111 1 124677776543
No 421
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.37 E-value=9.6e-07 Score=67.58 Aligned_cols=114 Identities=27% Similarity=0.386 Sum_probs=66.5
Q ss_pred cEEEEEecCCChHHHHHHHHHhcC-CCCeEEEEecccCCcccccceeEecCCCchhhhhhhhcCcceeccccc-chHHHH
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTEQ-HDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLELKNGCLCCSVKD-NGVKAI 98 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~~-~~~~~~vi~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~gci~~~~~~-~~~~~l 98 (184)
-.+++.|+.||||||||..+++.. ...+.+|+.+|..... +.+.++-. .+ ..+...+.|-.| .+-. ....++
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~-Da~~l~~~-~g---~~i~~v~TG~~C-H~da~m~~~ai 87 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKE-DADRLRKL-PG---EPIIGVETGKGC-HLDASMNLEAI 87 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechh-hHHHHHhC-CC---CeeEEeccCCcc-CCcHHHHHHHH
Confidence 489999999999999999999864 4478999998876422 11111100 11 112222323222 2211 124567
Q ss_pred HHHHHHcCCCCEEEEccCC-CCCChhHHHHhhhccccCCceEeCcEEEEEcCCCc
Q psy7718 99 ENLMLKRGKFDYILLETTG-LADPGPIAKVFWLDKELGSDIYLDGIVTVVDCKHT 152 (184)
Q Consensus 99 ~~ll~~~~~~d~iiiE~tg-~~dp~~i~~~l~~~~~~~~~~~l~~vi~vvDa~~~ 152 (184)
+++..+....|++++|..| +.-|. ++.++..+. |+|+|....
T Consensus 88 ~~l~~~~~~~Dll~iEs~GNL~~~~--------sp~L~d~~~----v~VidvteG 130 (202)
T COG0378 88 EELVLDFPDLDLLFIESVGNLVCPF--------SPDLGDHLR----VVVIDVTEG 130 (202)
T ss_pred HHHhhcCCcCCEEEEecCcceeccc--------CcchhhceE----EEEEECCCC
Confidence 7776555557999999988 44432 344444333 566665543
No 422
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=98.35 E-value=4.7e-07 Score=80.78 Aligned_cols=123 Identities=21% Similarity=0.284 Sum_probs=67.3
Q ss_pred CccEEEEEecCCChHHHHHHHHHhcC--CCCeEEEEecccCCcccc---cceeEecCCCchhhhhhhhcCcceeccccc-
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTEQ--HDKKIAVILNEFGEGSAM---EKSVSVGDNGNLYEEWLELKNGCLCCSVKD- 92 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~~--~~~~~~vi~~~~~~~~~~---~~~~~~~~~~~l~~~~~~l~~gci~~~~~~- 92 (184)
+.++++|+|++|||||||+..|+... ++.+++++.|+.+....+ .++..+.+.++- .+...+.. -+..+.+
T Consensus 9 ~~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVavIKh~~h~~d~d~~gkDs~r~~~aGA~--~v~i~s~~-~~a~~~~~ 85 (597)
T PRK14491 9 SIPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLAVIKHAHHNFDVDQPGKDSYRLRKAGAS--QMLVASRV-RWALMTET 85 (597)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEEEEEcCCcCCCCCCCCchHHHHHHcCCc--EEEEEcCC-eEEEEEEc
Confidence 36799999999999999999999864 467999999865442211 222223333321 11001111 0111111
Q ss_pred --chHHHHHHHHHHc--CCCCEEEEccCCCCCChhHHHHhhhccccCCc-e--EeCcEEEEE
Q psy7718 93 --NGVKAIENLMLKR--GKFDYILLETTGLADPGPIAKVFWLDKELGSD-I--YLDGIVTVV 147 (184)
Q Consensus 93 --~~~~~l~~ll~~~--~~~d~iiiE~tg~~dp~~i~~~l~~~~~~~~~-~--~l~~vi~vv 147 (184)
.....+.+++.+. ...|+|++|..+-.. .+..++.+ ...... + ...++++++
T Consensus 86 ~~~~~~~l~~~l~~l~~~~~D~vlvEG~k~~~-~PkI~v~r--~~~~~~~l~~~~~~v~Av~ 144 (597)
T PRK14491 86 PRDGEPELPHLLKQIDADKVDIVLVEGFKKLA-LPKIELHR--AAHGKPWIYPHDENIIAIA 144 (597)
T ss_pred CcCCCcCHHHHHHhcCcCCCCEEEEcCCCCCC-CCEEEEEc--ccCCCCccCCCCCCEEEEE
Confidence 0112345555433 358999999988644 44444432 222221 2 246677777
No 423
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=98.32 E-value=7.3e-07 Score=70.46 Aligned_cols=37 Identities=24% Similarity=0.350 Sum_probs=30.8
Q ss_pred cEEEEEecCCChHHHHHHHHHhcC--CCCeEEEEecccC
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTEQ--HDKKIAVILNEFG 57 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~~--~~~~~~vi~~~~~ 57 (184)
+++.|+|+.||||||++..|+... ++.+++++.+..+
T Consensus 2 ~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK~~~~ 40 (229)
T PRK14494 2 RAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAKHTHH 40 (229)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEEeccc
Confidence 589999999999999999999864 4578888886443
No 424
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.31 E-value=2.2e-06 Score=73.59 Aligned_cols=43 Identities=14% Similarity=0.067 Sum_probs=38.4
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCe
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKK 48 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~ 48 (184)
.+..+++++ |++.+|.+++|.|+||+|||||+++|++...+..
T Consensus 141 TGi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv 183 (434)
T PRK07196 141 VGVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADV 183 (434)
T ss_pred cceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCe
Confidence 456799999 9999999999999999999999999998766553
No 425
>KOG0054|consensus
Probab=98.31 E-value=9e-07 Score=84.45 Aligned_cols=54 Identities=28% Similarity=0.348 Sum_probs=47.1
Q ss_pred CCCCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 2 DSDSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 2 ~~~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
|+++..+.|+||||++++|..++|+|+-|||||+||..++|+.+..+|.+.+++
T Consensus 529 ~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g 582 (1381)
T KOG0054|consen 529 DSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG 582 (1381)
T ss_pred CCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC
Confidence 444456699999999999999999999999999999999999877777777754
No 426
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.29 E-value=5.9e-06 Score=70.72 Aligned_cols=38 Identities=24% Similarity=0.306 Sum_probs=29.5
Q ss_pred ecCccEEEEEecCCChHHHHHHHHHhcC----CCCeEEEEec
Q psy7718 17 LQPVPVTIITGYLGAGKTTLLNYILTEQ----HDKKIAVILN 54 (184)
Q Consensus 17 v~~~~vi~i~G~~GsGKTTll~~L~~~~----~~~~~~vi~~ 54 (184)
+.++.+++++|+||+||||+++.|++.. .+.++.++..
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~ 229 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTT 229 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 3578899999999999999999998742 3355655543
No 427
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.28 E-value=4.1e-06 Score=72.84 Aligned_cols=47 Identities=30% Similarity=0.304 Sum_probs=36.8
Q ss_pred CCccccceecCccEEEEEecCCChHHHHHHHHHhcC---CC-CeEEEEecc
Q psy7718 9 VPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQ---HD-KKIAVILNE 55 (184)
Q Consensus 9 ~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~---~~-~~~~vi~~~ 55 (184)
++++.++.+.++.+++|+|+||+||||++.+|++.. .+ .++.++..|
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~D 295 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTD 295 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 456677778889999999999999999999999753 22 356666544
No 428
>KOG2355|consensus
Probab=98.27 E-value=1e-06 Score=68.39 Aligned_cols=39 Identities=26% Similarity=0.272 Sum_probs=36.0
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
..+.+-++|+.++.+....++|.||||||||++.|.|..
T Consensus 26 ~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKh 64 (291)
T KOG2355|consen 26 SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKH 64 (291)
T ss_pred CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcc
Confidence 357899999999999999999999999999999999864
No 429
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=98.27 E-value=1.8e-06 Score=70.15 Aligned_cols=36 Identities=25% Similarity=0.388 Sum_probs=30.5
Q ss_pred cEEEEEecCCChHHHHHHHHHhcC--CCCeEEEEecccC
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTEQ--HDKKIAVILNEFG 57 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~~--~~~~~~vi~~~~~ 57 (184)
++++|+|+.|||||||+..|+... ++ +++++.++.+
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~h 39 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKHMDT 39 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEEcCC
Confidence 589999999999999999999864 34 7888888753
No 430
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.25 E-value=2.1e-06 Score=69.61 Aligned_cols=34 Identities=26% Similarity=0.123 Sum_probs=29.4
Q ss_pred cEEEEEecCCChHHHHHHHHHhcCCCCeEEEEec
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTEQHDKKIAVILN 54 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~ 54 (184)
.-++|.|++|||||||++.|++...+..+.+..+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~ 145 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLR 145 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEEC
Confidence 5789999999999999999999988777766554
No 431
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.24 E-value=1.6e-06 Score=74.11 Aligned_cols=42 Identities=21% Similarity=0.125 Sum_probs=34.3
Q ss_pred CCccccceec-----CccEEEEEecCCChHHHHHHHHHhcCCCCeEE
Q psy7718 9 VPDLVPAELQ-----PVPVTIITGYLGAGKTTLLNYILTEQHDKKIA 50 (184)
Q Consensus 9 ~l~~v~l~v~-----~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~ 50 (184)
.+.+..|++. .++|++++||||-|||||++.|+|..+|.++.
T Consensus 351 ~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~ 397 (591)
T COG1245 351 TYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS 397 (591)
T ss_pred ecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC
Confidence 4556667665 47799999999999999999999988776553
No 432
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.23 E-value=9.9e-07 Score=71.11 Aligned_cols=35 Identities=26% Similarity=0.367 Sum_probs=32.2
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHH
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYIL 41 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~ 41 (184)
...|++|++.++.+.+++|+|.+|||||||++.++
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l 42 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTL 42 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHH
Confidence 45799999999999999999999999999998764
No 433
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.22 E-value=4.8e-06 Score=64.40 Aligned_cols=34 Identities=26% Similarity=0.417 Sum_probs=27.7
Q ss_pred CCCccccceecCccEEEEEecCCChHHHHHHHHHh
Q psy7718 8 EVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILT 42 (184)
Q Consensus 8 ~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~ 42 (184)
..+++++++..++ +.+|+|+|||||||++..|..
T Consensus 10 r~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~ 43 (198)
T cd03276 10 MCHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTI 43 (198)
T ss_pred cceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHH
Confidence 3456677777664 889999999999999999874
No 434
>PRK14974 cell division protein FtsY; Provisional
Probab=98.21 E-value=8.5e-06 Score=67.96 Aligned_cols=118 Identities=19% Similarity=0.188 Sum_probs=60.6
Q ss_pred CccEEEEEecCCChHHHHHHHHHhcC--CCCeEEEEecccC-CcccccceeEecCCCchhhhhhhhcCccee--cccccc
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTEQ--HDKKIAVILNEFG-EGSAMEKSVSVGDNGNLYEEWLELKNGCLC--CSVKDN 93 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~~--~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~l~~~~~~l~~gci~--~~~~~~ 93 (184)
+..+++++|++|+||||++..|+... .+.++.++..|.. .... .| ...... ..+.-+ .....+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~-------eq----L~~~a~-~lgv~v~~~~~g~d 206 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAI-------EQ----LEEHAE-RLGVKVIKHKYGAD 206 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHH-------HH----HHHHHH-HcCCceecccCCCC
Confidence 35699999999999999999998753 3345555443321 1110 00 000000 011100 001112
Q ss_pred hH----HHHHHHHHHcCCCCEEEEccCCCCC-ChhHHHHhhhccccCCceEeCcEEEEEcCCCcc
Q psy7718 94 GV----KAIENLMLKRGKFDYILLETTGLAD-PGPIAKVFWLDKELGSDIYLDGIVTVVDCKHTI 153 (184)
Q Consensus 94 ~~----~~l~~ll~~~~~~d~iiiE~tg~~d-p~~i~~~l~~~~~~~~~~~l~~vi~vvDa~~~~ 153 (184)
.. ..+... +..+.|+|+|.+.|..+ +..+.+-+. .+.+....+.++.|+|+.+-+
T Consensus 207 p~~v~~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~---~i~~~~~pd~~iLVl~a~~g~ 266 (336)
T PRK14974 207 PAAVAYDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELK---KIVRVTKPDLVIFVGDALAGN 266 (336)
T ss_pred HHHHHHHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHH---HHHHhhCCceEEEeeccccch
Confidence 11 222222 23568999999999875 344444332 112223345678899986543
No 435
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.20 E-value=1.3e-06 Score=67.93 Aligned_cols=36 Identities=28% Similarity=0.254 Sum_probs=28.7
Q ss_pred cCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEe
Q psy7718 18 QPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVIL 53 (184)
Q Consensus 18 ~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~ 53 (184)
+++.+++|+|++|||||||++.|.+...+..+.++.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~ 39 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIIS 39 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEec
Confidence 468899999999999999999999876543444443
No 436
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=98.17 E-value=2.6e-06 Score=64.58 Aligned_cols=47 Identities=19% Similarity=0.192 Sum_probs=38.8
Q ss_pred CCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 8 EVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 8 ~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
.=|-.+|.++..|+++=++||||+|||||+..++|... .+|.|...+
T Consensus 13 tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~-~sGsi~~~G 59 (248)
T COG4138 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAG 59 (248)
T ss_pred ccccccccccccceEEEEECCCCccHHHHHHHHhCCCC-CCceEEECC
Confidence 34667889999999999999999999999999999754 456666643
No 437
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.17 E-value=4e-06 Score=61.98 Aligned_cols=36 Identities=39% Similarity=0.535 Sum_probs=28.5
Q ss_pred EEEEEecCCChHHHHHHHHHhcC--CCCeEEEEecccC
Q psy7718 22 VTIITGYLGAGKTTLLNYILTEQ--HDKKIAVILNEFG 57 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~~--~~~~~~vi~~~~~ 57 (184)
+++++|++||||||+++.+.... .+.++.++..|.+
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~ 38 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPS 38 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCC
Confidence 47899999999999999998753 5567777766653
No 438
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.14 E-value=1.8e-05 Score=64.10 Aligned_cols=125 Identities=17% Similarity=0.228 Sum_probs=68.0
Q ss_pred CCccccceecC-------ccEEEEEecCCChHHHHHHHHHhcC--CCCeEEEEecccCCcccccceeEecCCCchhhhhh
Q psy7718 9 VPDLVPAELQP-------VPVTIITGYLGAGKTTLLNYILTEQ--HDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWL 79 (184)
Q Consensus 9 ~l~~v~l~v~~-------~~vi~i~G~~GsGKTTll~~L~~~~--~~~~~~vi~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (184)
+++++++.+.. +++++++|++|+||||+++.|+... .+.++.++..+....+. + .++.
T Consensus 57 v~~~l~~~~~~~~~~~~~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~------~-------~ql~ 123 (270)
T PRK06731 57 ILEDMSSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGT------V-------QQLQ 123 (270)
T ss_pred HhcccEEeeCCcccccCCCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHH------H-------HHHH
Confidence 58888888874 4899999999999999999998753 23455555443221110 0 0111
Q ss_pred hhc--Ccce-eccc-ccchHHHHHHHHHHcCCCCEEEEccCCCCC--ChhHHHHhhhccccCCceEeCcEEEEEcCCC
Q psy7718 80 ELK--NGCL-CCSV-KDNGVKAIENLMLKRGKFDYILLETTGLAD--PGPIAKVFWLDKELGSDIYLDGIVTVVDCKH 151 (184)
Q Consensus 80 ~l~--~gci-~~~~-~~~~~~~l~~ll~~~~~~d~iiiE~tg~~d--p~~i~~~l~~~~~~~~~~~l~~vi~vvDa~~ 151 (184)
.+. .++- .... ..++...+.++ .+..++|+|++-+.|..+ ...+.++.. +.+....+.++.|+||..
T Consensus 124 ~~~~~~~~~~~~~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~----~~~~~~~~~~~LVl~a~~ 196 (270)
T PRK06731 124 DYVKTIGFEVIAVRDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIE----TMGQVEPDYICLTLSASM 196 (270)
T ss_pred HHhhhcCceEEecCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHH----HHhhhCCCeEEEEEcCcc
Confidence 100 0111 1101 11222334333 233579999998888864 233333321 111222334788999864
No 439
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.13 E-value=2.2e-05 Score=60.67 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=21.3
Q ss_pred EEEEEecCCChHHHHHHHHHhcCC
Q psy7718 22 VTIITGYLGAGKTTLLNYILTEQH 45 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~~~ 45 (184)
+++|+||+||||||+++.+++...
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 689999999999999999887653
No 440
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=98.10 E-value=2.1e-05 Score=59.84 Aligned_cols=33 Identities=18% Similarity=0.112 Sum_probs=25.4
Q ss_pred CccccceecCccEEEEEecCCChHHHHHHHHHh
Q psy7718 10 PDLVPAELQPVPVTIITGYLGAGKTTLLNYILT 42 (184)
Q Consensus 10 l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~ 42 (184)
+++..+.....++.+|+|+||||||+++..|.-
T Consensus 12 ~~~~~~~~~~~~~~~i~G~NGsGKSnil~Ai~~ 44 (178)
T cd03239 12 YRDETVVGGSNSFNAIVGPNGSGKSNIVDAICF 44 (178)
T ss_pred CCCCEEecCCCceEEEECCCCCCHHHHHHHHHH
Confidence 344455444445999999999999999999864
No 441
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.09 E-value=4.2e-06 Score=64.96 Aligned_cols=37 Identities=38% Similarity=0.401 Sum_probs=29.9
Q ss_pred cCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEec
Q psy7718 18 QPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILN 54 (184)
Q Consensus 18 ~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~ 54 (184)
.+..+++|+|++|||||||.+.|.+......+.++..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~ 40 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQ 40 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeC
Confidence 4677999999999999999999998765445555543
No 442
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.09 E-value=3.2e-05 Score=65.33 Aligned_cols=42 Identities=21% Similarity=0.306 Sum_probs=33.4
Q ss_pred cceecCccEEEEEecCCChHHHHHHHHHhcC--CCCeEEEEecc
Q psy7718 14 PAELQPVPVTIITGYLGAGKTTLLNYILTEQ--HDKKIAVILNE 55 (184)
Q Consensus 14 ~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~--~~~~~~vi~~~ 55 (184)
++.+.++++++|+||+|+||||++..|+... .+.++.++..|
T Consensus 200 ~~~~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaD 243 (407)
T PRK12726 200 SFDLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTD 243 (407)
T ss_pred CceecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 5567889999999999999999999998643 45566666544
No 443
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.08 E-value=1.6e-05 Score=64.84 Aligned_cols=39 Identities=31% Similarity=0.371 Sum_probs=30.7
Q ss_pred cCccEEEEEecCCChHHHHHHHHHhcC--C-C-CeEEEEeccc
Q psy7718 18 QPVPVTIITGYLGAGKTTLLNYILTEQ--H-D-KKIAVILNEF 56 (184)
Q Consensus 18 ~~~~vi~i~G~~GsGKTTll~~L~~~~--~-~-~~~~vi~~~~ 56 (184)
.++.+++|+||+|+||||++..|+... . + .++.++..|.
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 457799999999999999999998753 2 3 6777776543
No 444
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.07 E-value=2.4e-05 Score=66.41 Aligned_cols=37 Identities=27% Similarity=0.347 Sum_probs=28.8
Q ss_pred CccEEEEEecCCChHHHHHHHHHhcC--CCCeEEEEecc
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTEQ--HDKKIAVILNE 55 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~~--~~~~~~vi~~~ 55 (184)
+..+++|+|++|+||||++..|+... .+.++.++..|
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aD 278 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTD 278 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Confidence 34689999999999999999998753 34566666544
No 445
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.07 E-value=2.1e-05 Score=63.80 Aligned_cols=40 Identities=20% Similarity=0.278 Sum_probs=30.9
Q ss_pred ecCccEEEEEecCCChHHHHHHHHHhcC--CCCeEEEEeccc
Q psy7718 17 LQPVPVTIITGYLGAGKTTLLNYILTEQ--HDKKIAVILNEF 56 (184)
Q Consensus 17 v~~~~vi~i~G~~GsGKTTll~~L~~~~--~~~~~~vi~~~~ 56 (184)
..+..+++++|++|+||||++..|+... .+.++.++-.|.
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 4556799999999999999999998743 445677776553
No 446
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.04 E-value=4.8e-06 Score=64.05 Aligned_cols=34 Identities=29% Similarity=0.454 Sum_probs=26.9
Q ss_pred EEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 22 VTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
+++|+|++|||||||.+.|.+.....++.++..|
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D 34 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQD 34 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 5899999999999999999987644455555533
No 447
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.02 E-value=3e-05 Score=64.93 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=23.8
Q ss_pred cCccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 18 QPVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 18 ~~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
.+...+.|+|+.||||||+++.+++..
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i 146 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYI 146 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 456799999999999999999999854
No 448
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.01 E-value=9.6e-06 Score=62.72 Aligned_cols=119 Identities=18% Similarity=0.246 Sum_probs=61.1
Q ss_pred cEEEEEecCCChHHHHHHHHHhc--CCCCeEEEEecccCCcccccceeEecCCCchhhhhhhhcCccee-cccccchHHH
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE--QHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLELKNGCLC-CSVKDNGVKA 97 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~--~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~gci~-~~~~~~~~~~ 97 (184)
.++.++||+|+||||++-.|+.. ..+.++.++..|..-.+. +.| ...+.+.-+.-++ +....+....
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga------~eQ----L~~~a~~l~vp~~~~~~~~~~~~~ 71 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGA------VEQ----LKTYAEILGVPFYVARTESDPAEI 71 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHH------HHH----HHHHHHHHTEEEEESSTTSCHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccH------HHH----HHHHHHHhccccchhhcchhhHHH
Confidence 48999999999999999999864 247778777755432111 000 0111111111111 1111223332
Q ss_pred HHHHHH--HcCCCCEEEEccCCCCCCh--hHHHHhhhccccCCceEeCcEEEEEcCCCcc
Q psy7718 98 IENLML--KRGKFDYILLETTGLADPG--PIAKVFWLDKELGSDIYLDGIVTVVDCKHTI 153 (184)
Q Consensus 98 l~~ll~--~~~~~d~iiiE~tg~~dp~--~i~~~l~~~~~~~~~~~l~~vi~vvDa~~~~ 153 (184)
+.+.++ +..+.|+|+|-+.|...-. .+.++- .+.+...-..++.|+++..-+
T Consensus 72 ~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~----~~~~~~~~~~~~LVlsa~~~~ 127 (196)
T PF00448_consen 72 AREALEKFRKKGYDLVLIDTAGRSPRDEELLEELK----KLLEALNPDEVHLVLSATMGQ 127 (196)
T ss_dssp HHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHH----HHHHHHSSSEEEEEEEGGGGG
T ss_pred HHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHH----HHhhhcCCccceEEEecccCh
Confidence 333322 2357999999998886533 222221 111122345688899987543
No 449
>PRK10867 signal recognition particle protein; Provisional
Probab=98.00 E-value=5.2e-05 Score=65.31 Aligned_cols=121 Identities=21% Similarity=0.255 Sum_probs=63.4
Q ss_pred CccEEEEEecCCChHHHHHHHHHhcC--C-CCeEEEEecccCCcccccceeEecCCCchhhhhhhhcCcceecc-cccch
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTEQ--H-DKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLELKNGCLCCS-VKDNG 94 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~~--~-~~~~~vi~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~gci~~~-~~~~~ 94 (184)
+..++.++|++||||||+...|+... . +.++.++..|......... + ..+....+.-+... ...+.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQ-L---------~~~a~~~gv~v~~~~~~~dp 168 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQ-L---------KTLGEQIGVPVFPSGDGQDP 168 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHH-H---------HHHHhhcCCeEEecCCCCCH
Confidence 35689999999999999999888643 3 5677777665432111000 0 00011111101110 00122
Q ss_pred HHHHHHHHH--HcCCCCEEEEccCCCCCC-hhHHHHhhhccccCCceEeCcEEEEEcCCCc
Q psy7718 95 VKAIENLML--KRGKFDYILLETTGLADP-GPIAKVFWLDKELGSDIYLDGIVTVVDCKHT 152 (184)
Q Consensus 95 ~~~l~~ll~--~~~~~d~iiiE~tg~~dp-~~i~~~l~~~~~~~~~~~l~~vi~vvDa~~~ 152 (184)
..-..+.+. +...+|+||+.+.|.... ..+.+.+. .+.+.+..+.++.|+|+.+.
T Consensus 169 ~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~---~i~~~v~p~evllVlda~~g 226 (433)
T PRK10867 169 VDIAKAALEEAKENGYDVVIVDTAGRLHIDEELMDELK---AIKAAVNPDEILLVVDAMTG 226 (433)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCcccCHHHHHHHH---HHHHhhCCCeEEEEEecccH
Confidence 111112221 245799999999997753 33333222 12223345667999998653
No 450
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.00 E-value=5.6e-06 Score=63.23 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=23.7
Q ss_pred ccEEEEEecCCChHHHHHHHHHhcCCC
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTEQHD 46 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~~~~ 46 (184)
+.+++|+||+||||||+++.|.+...+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~ 28 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT 28 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 578999999999999999999876543
No 451
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.00 E-value=4.4e-06 Score=65.96 Aligned_cols=32 Identities=28% Similarity=0.323 Sum_probs=26.3
Q ss_pred cCccEEEEEecCCChHHHHHHHHHhcCCCCeE
Q psy7718 18 QPVPVTIITGYLGAGKTTLLNYILTEQHDKKI 49 (184)
Q Consensus 18 ~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~ 49 (184)
.+..+++|+|+||||||||++.|.+..++..+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g 62 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGE 62 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccC
Confidence 34569999999999999999999987655433
No 452
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.99 E-value=5.7e-06 Score=65.07 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=21.1
Q ss_pred EEEEEecCCChHHHHHHHHHhcC
Q psy7718 22 VTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
+++|.|+||||||||.+.|.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999865
No 453
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.98 E-value=8.4e-06 Score=59.72 Aligned_cols=37 Identities=32% Similarity=0.454 Sum_probs=27.9
Q ss_pred cEEEEEecCCChHHHHHHHHHhcC--CCCeEEEEecccC
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTEQ--HDKKIAVILNEFG 57 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~~--~~~~~~vi~~~~~ 57 (184)
|++.|+|+.|||||||++.|+... ++.++.++.+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccC
Confidence 689999999999999999999863 6777887775443
No 454
>KOG0064|consensus
Probab=97.96 E-value=9.4e-06 Score=70.58 Aligned_cols=44 Identities=18% Similarity=0.178 Sum_probs=38.1
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCe
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKK 48 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~ 48 (184)
.+.-++..++|.+.+|-...|+||||+|||+|.|+|.|..+-..
T Consensus 493 ~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~ 536 (728)
T KOG0064|consen 493 AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYN 536 (728)
T ss_pred CcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccC
Confidence 45568899999999999999999999999999999998764333
No 455
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.95 E-value=6.6e-05 Score=63.81 Aligned_cols=118 Identities=18% Similarity=0.165 Sum_probs=60.7
Q ss_pred CccEEEEEecCCChHHHHHHHHHhcC------CCCeEEEEecccCCcccccceeEecCCCchhhhhhhhcCcceeccccc
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTEQ------HDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLELKNGCLCCSVKD 92 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~~------~~~~~~vi~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~gci~~~~~~ 92 (184)
++.++.++|++|+||||++..|+... .+.++.++..|....+.. .| ...+...-+.-+.+ .
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~------eQ----L~~~a~~lgvpv~~---~ 239 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAK------KQ----IQTYGDIMGIPVKA---I 239 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHH------HH----HHHHhhcCCcceEe---e
Confidence 35699999999999999999998642 245677665443221100 00 00000100100111 0
Q ss_pred chHHHHHHHHHHcCCCCEEEEccCCCCCCh--hHHHHhhhccccCCceEeCcEEEEEcCCCc
Q psy7718 93 NGVKAIENLMLKRGKFDYILLETTGLADPG--PIAKVFWLDKELGSDIYLDGIVTVVDCKHT 152 (184)
Q Consensus 93 ~~~~~l~~ll~~~~~~d~iiiE~tg~~dp~--~i~~~l~~~~~~~~~~~l~~vi~vvDa~~~ 152 (184)
.....+.+.+.+..+.|+|+|-+.|...-. .+.++......... -..++.|+||.+-
T Consensus 240 ~~~~~l~~~L~~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~---~~e~~LVlsat~~ 298 (388)
T PRK12723 240 ESFKDLKEEITQSKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGR---DAEFHLAVSSTTK 298 (388)
T ss_pred CcHHHHHHHHHHhCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCC---CCeEEEEEcCCCC
Confidence 112334444444568999999777776532 22222111111111 1147889998763
No 456
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=97.95 E-value=1.5e-05 Score=66.13 Aligned_cols=46 Identities=20% Similarity=0.100 Sum_probs=39.8
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEE
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAV 51 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~v 51 (184)
.+..+++++ |.+.+|++++|.|++|+|||||++.|++...+..+.+
T Consensus 55 tGi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi 100 (326)
T cd01136 55 TGVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVI 100 (326)
T ss_pred CCcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEE
Confidence 345689999 9999999999999999999999999999876655443
No 457
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=97.94 E-value=1.1e-05 Score=68.17 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=31.6
Q ss_pred CccEEEEEecCCChHHHHHHHHHhcCC-CCeEEEEecccC
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTEQH-DKKIAVILNEFG 57 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~~~-~~~~~vi~~~~~ 57 (184)
++-+++|+|++|||||||++.|++... ..+++++.+..+
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~~l~~~~~V~~ik~~~~ 43 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVRRLSERFSVGYYKHGCH 43 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHhhCceEEEEEeCCC
Confidence 567999999999999999999998642 278888886433
No 458
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.94 E-value=6.1e-05 Score=64.67 Aligned_cols=119 Identities=18% Similarity=0.230 Sum_probs=64.7
Q ss_pred CccEEEEEecCCChHHHHHHHHHhcC--CCCeEEEEecccCCcccccceeEecCCCchhhhhhhhcCcceeccc--ccch
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTEQ--HDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLELKNGCLCCSV--KDNG 94 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~~--~~~~~~vi~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~gci~~~~--~~~~ 94 (184)
+..++.++|++|+||||++..|+... .+.++.++..|...... +.| ....... .+.-+... ..+.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA------~eQ----Lk~~a~~-~~vp~~~~~~~~dp 167 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGA------FDQ----LKQNATK-ARIPFYGSYTESDP 167 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhH------HHH----HHHHhhc-cCCeEEeecCCCCH
Confidence 35689999999999999999998643 45567776554322110 000 0000111 11111111 1122
Q ss_pred H----HHHHHHHHHcCCCCEEEEccCCCCCChh-HHHHhhhccccCCceEeCcEEEEEcCCCcc
Q psy7718 95 V----KAIENLMLKRGKFDYILLETTGLADPGP-IAKVFWLDKELGSDIYLDGIVTVVDCKHTI 153 (184)
Q Consensus 95 ~----~~l~~ll~~~~~~d~iiiE~tg~~dp~~-i~~~l~~~~~~~~~~~l~~vi~vvDa~~~~ 153 (184)
. ..+..+ +...+|+||+-+.|..+... +.+-+. .+.+....+.++.|+||..-+
T Consensus 168 ~~i~~~~l~~~--~~~~~DvViIDTaGr~~~d~~lm~El~---~i~~~~~p~e~lLVlda~~Gq 226 (429)
T TIGR01425 168 VKIASEGVEKF--KKENFDIIIVDTSGRHKQEDSLFEEML---QVAEAIQPDNIIFVMDGSIGQ 226 (429)
T ss_pred HHHHHHHHHHH--HhCCCCEEEEECCCCCcchHHHHHHHH---HHhhhcCCcEEEEEeccccCh
Confidence 1 233332 23579999999999877642 333222 222333456689999997654
No 459
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.93 E-value=0.00013 Score=62.73 Aligned_cols=119 Identities=20% Similarity=0.250 Sum_probs=63.2
Q ss_pred ccEEEEEecCCChHHHHHHHHHhcC---CCCeEEEEecccCCcccccceeEecCCCchhhhhhhhcC-cceecccccchH
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTEQ---HDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLELKN-GCLCCSVKDNGV 95 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~~---~~~~~~vi~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~-gci~~~~~~~~~ 95 (184)
..++.++|++||||||+...|+... .+.++.++..|........ | ...+....+ ..+.+.-..+..
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~------Q----L~~~a~~~gvp~~~~~~~~~P~ 168 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIE------Q----LKVLGQQVGVPVFALGKGQSPV 168 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHH------H----HHHHHHhcCCceEecCCCCCHH
Confidence 4589999999999999999888652 4567777766643211100 0 000000000 000000001111
Q ss_pred ----HHHHHHHHHcCCCCEEEEccCCCCCC-hhHHHHhhhccccCCceEeCcEEEEEcCCCcc
Q psy7718 96 ----KAIENLMLKRGKFDYILLETTGLADP-GPIAKVFWLDKELGSDIYLDGIVTVVDCKHTI 153 (184)
Q Consensus 96 ----~~l~~ll~~~~~~d~iiiE~tg~~dp-~~i~~~l~~~~~~~~~~~l~~vi~vvDa~~~~ 153 (184)
..+..+ ....+|+||+.+.|...- ..+...+. .+.+.+..+.++.|+|+.+.+
T Consensus 169 ~i~~~al~~~--~~~~~DvVIIDTaGr~~~d~~l~~eL~---~i~~~~~p~e~lLVvda~tgq 226 (428)
T TIGR00959 169 EIARRALEYA--KENGFDVVIVDTAGRLQIDEELMEELA---AIKEILNPDEILLVVDAMTGQ 226 (428)
T ss_pred HHHHHHHHHH--HhcCCCEEEEeCCCccccCHHHHHHHH---HHHHhhCCceEEEEEeccchH
Confidence 122222 235799999999997643 22333222 223334566789999987543
No 460
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.93 E-value=3.7e-05 Score=64.40 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=27.0
Q ss_pred eecCccEEEEEecCCChHHHHHHHHHhcCCCC
Q psy7718 16 ELQPVPVTIITGYLGAGKTTLLNYILTEQHDK 47 (184)
Q Consensus 16 ~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~ 47 (184)
.++.+.-+.|+|+.|||||||++.|++...+.
T Consensus 158 ~v~~~~nilI~G~tGSGKTTll~aLl~~i~~~ 189 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTMSKTLISAIPPQ 189 (344)
T ss_pred HHHcCCeEEEECCCCccHHHHHHHHHcccCCC
Confidence 35567789999999999999999999876543
No 461
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.92 E-value=9.3e-06 Score=62.65 Aligned_cols=29 Identities=28% Similarity=0.483 Sum_probs=25.9
Q ss_pred ecCccEEEEEecCCChHHHHHHHHHhcCC
Q psy7718 17 LQPVPVTIITGYLGAGKTTLLNYILTEQH 45 (184)
Q Consensus 17 v~~~~vi~i~G~~GsGKTTll~~L~~~~~ 45 (184)
++++.+++|+|++|||||||++.|.+..+
T Consensus 2 ~~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 2 MRRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 46789999999999999999999998653
No 462
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=97.91 E-value=1.7e-05 Score=68.35 Aligned_cols=47 Identities=19% Similarity=0.137 Sum_probs=41.3
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEe
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVIL 53 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~ 53 (184)
+..+++++ |.+.++.+++|.|++|+|||||++.|++...+..+.+..
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~ 191 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIAL 191 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEE
Confidence 45689999 999999999999999999999999999987776665544
No 463
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.90 E-value=1.1e-05 Score=61.34 Aligned_cols=28 Identities=21% Similarity=0.188 Sum_probs=25.1
Q ss_pred CccEEEEEecCCChHHHHHHHHHhcCCC
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTEQHD 46 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~~~~ 46 (184)
+|++++++|+|||||||+++.|.+...+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4789999999999999999999987654
No 464
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.89 E-value=9.8e-06 Score=75.52 Aligned_cols=34 Identities=32% Similarity=0.356 Sum_probs=31.3
Q ss_pred CCCccccceecCccEEEEEecCCChHHHHHHHHH
Q psy7718 8 EVPDLVPAELQPVPVTIITGYLGAGKTTLLNYIL 41 (184)
Q Consensus 8 ~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~ 41 (184)
..|+++||+++.|++++|+|+||||||||++-.+
T Consensus 621 ~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~~~l 654 (924)
T TIGR00630 621 NNLKNITVSIPLGLFTCITGVSGSGKSTLINDTL 654 (924)
T ss_pred CCcCceEEEEeCCCEEEEECCCCCCHHHHHHHHH
Confidence 3699999999999999999999999999998555
No 465
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.88 E-value=7.9e-05 Score=55.99 Aligned_cols=115 Identities=21% Similarity=0.252 Sum_probs=59.2
Q ss_pred EEEEEecCCChHHHHHHHHHhcC--CCCeEEEEecccCCcccccceeEecCCCchhhhhhhhcCcceec-ccccchH---
Q psy7718 22 VTIITGYLGAGKTTLLNYILTEQ--HDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLELKNGCLCC-SVKDNGV--- 95 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~~--~~~~~~vi~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~gci~~-~~~~~~~--- 95 (184)
+++++|+.|+||||+...++... .+.++.++..|.......... .......+.-+.. ....+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l----------~~~~~~~~~~~~~~~~~~~~~~~~ 71 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQL----------RVLGEQVGVPVFEEGEGKDPVSIA 71 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHH----------HHhcccCCeEEEecCCCCCHHHHH
Confidence 68899999999999999988643 445676666554321110000 0000000100111 1111211
Q ss_pred -HHHHHHHHHcCCCCEEEEccCCCCCC-hhHHHHhhhccccCCceEeCcEEEEEcCCC
Q psy7718 96 -KAIENLMLKRGKFDYILLETTGLADP-GPIAKVFWLDKELGSDIYLDGIVTVVDCKH 151 (184)
Q Consensus 96 -~~l~~ll~~~~~~d~iiiE~tg~~dp-~~i~~~l~~~~~~~~~~~l~~vi~vvDa~~ 151 (184)
..+... .....|++++.+.|...- .+..+.+. .+......+.++.|+|+.+
T Consensus 72 ~~~~~~~--~~~~~d~viiDt~g~~~~~~~~l~~l~---~l~~~~~~~~~~lVv~~~~ 124 (173)
T cd03115 72 KRAIEHA--REENFDVVIVDTAGRLQIDENLMEELK---KIKRVVKPDEVLLVVDAMT 124 (173)
T ss_pred HHHHHHH--HhCCCCEEEEECcccchhhHHHHHHHH---HHHhhcCCCeEEEEEECCC
Confidence 222222 235789999988887531 22222222 1222234678899999854
No 466
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.88 E-value=9.3e-05 Score=59.81 Aligned_cols=26 Identities=42% Similarity=0.586 Sum_probs=22.7
Q ss_pred CccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
+...++|+|+.||||||+++.++...
T Consensus 79 ~~GlilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 79 PHGIILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhhh
Confidence 45589999999999999999988754
No 467
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=97.87 E-value=2.5e-05 Score=67.09 Aligned_cols=48 Identities=21% Similarity=0.106 Sum_probs=41.4
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEe
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVIL 53 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~ 53 (184)
.+..+++++ |.+.++..++|.|++|+|||||++.|++...+..+.+..
T Consensus 131 tG~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~ 178 (422)
T TIGR02546 131 TGVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIAL 178 (422)
T ss_pred CCceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEE
Confidence 456799999 999999999999999999999999999987776654443
No 468
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=97.87 E-value=7.8e-05 Score=64.08 Aligned_cols=47 Identities=21% Similarity=0.126 Sum_probs=39.2
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEe
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVIL 53 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~ 53 (184)
+..++|++ |.+.+|..++|.|++|+|||||++.|++...+..+.+..
T Consensus 143 GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~ 189 (432)
T PRK06793 143 GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISL 189 (432)
T ss_pred CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEe
Confidence 34577774 999999999999999999999999999987776665443
No 469
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.87 E-value=1.2e-05 Score=60.77 Aligned_cols=25 Identities=36% Similarity=0.488 Sum_probs=22.4
Q ss_pred ccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
+++++|+|++||||||+++.|....
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998764
No 470
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=97.87 E-value=5.1e-05 Score=66.02 Aligned_cols=48 Identities=19% Similarity=0.247 Sum_probs=42.4
Q ss_pred CCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 8 EVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 8 ~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
..+++|||++.+|+|++|.|--|||+|-+++.|-|..+...|.|..++
T Consensus 273 ~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G 320 (500)
T COG1129 273 GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDG 320 (500)
T ss_pred CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECC
Confidence 368899999999999999999999999999999997666677777754
No 471
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.86 E-value=9.1e-05 Score=63.77 Aligned_cols=39 Identities=33% Similarity=0.393 Sum_probs=30.1
Q ss_pred ecCccEEEEEecCCChHHHHHHHHHhcC----CCCeEEEEecc
Q psy7718 17 LQPVPVTIITGYLGAGKTTLLNYILTEQ----HDKKIAVILNE 55 (184)
Q Consensus 17 v~~~~vi~i~G~~GsGKTTll~~L~~~~----~~~~~~vi~~~ 55 (184)
+.++.++.|+||+|+||||++..|+... .+.++.++..|
T Consensus 218 ~~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D 260 (424)
T PRK05703 218 LKQGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLD 260 (424)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 4567899999999999999999998642 34567766543
No 472
>PRK09099 type III secretion system ATPase; Provisional
Probab=97.86 E-value=3e-05 Score=66.79 Aligned_cols=48 Identities=19% Similarity=0.142 Sum_probs=40.9
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEe
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVIL 53 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~ 53 (184)
.+..+++++ |.+.+|.+++|.|++|+|||||++.+++...+..+.+..
T Consensus 149 TGi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~ 196 (441)
T PRK09099 149 TGVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIAL 196 (441)
T ss_pred CCceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEE
Confidence 456799999 999999999999999999999999999877665554443
No 473
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=97.85 E-value=0.00012 Score=60.72 Aligned_cols=27 Identities=37% Similarity=0.560 Sum_probs=24.1
Q ss_pred ecCccEEEEEecCCChHHHHHHHHHhc
Q psy7718 17 LQPVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 17 v~~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
++...-+.|+|+.|||||||++.|+..
T Consensus 145 v~~~~~ilI~G~tGSGKTTll~aL~~~ 171 (319)
T PRK13894 145 VRAHRNILVIGGTGSGKTTLVNAIINE 171 (319)
T ss_pred HHcCCeEEEECCCCCCHHHHHHHHHHh
Confidence 556778999999999999999999975
No 474
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=97.85 E-value=2.2e-05 Score=67.58 Aligned_cols=48 Identities=23% Similarity=0.221 Sum_probs=40.5
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEe
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVIL 53 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~ 53 (184)
.+..+++.++ .+.+|++++|.|++|+|||||++.|.+...+..+.+..
T Consensus 151 TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~l 198 (450)
T PRK06002 151 TGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIAL 198 (450)
T ss_pred CCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeee
Confidence 4466888885 89999999999999999999999999887777665544
No 475
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.85 E-value=0.00011 Score=63.42 Aligned_cols=119 Identities=16% Similarity=0.176 Sum_probs=64.1
Q ss_pred CccEEEEEecCCChHHHHHHHHHhcC--CCCeEEEEecccCCcccccceeEecCCCchhhhhhh---hcCcceecc-ccc
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTEQ--HDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLE---LKNGCLCCS-VKD 92 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~~--~~~~~~vi~~~~~~~~~~~~~~~~~~~~~l~~~~~~---l~~gci~~~-~~~ 92 (184)
+..++.++|+.|+||||++..|+... .+.++.++..|..... .++.+.. ..+.-+... ...
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~a-------------a~eQL~~la~~~gvp~~~~~~~~ 160 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPA-------------AYDQLKQLAEKIGVPFYGDPDNK 160 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHH-------------HHHHHHHHHHHcCCcEEecCCcc
Confidence 45689999999999999999998643 3456777655542211 0111111 111111111 112
Q ss_pred chHHHHHHHHHHcCCCCEEEEccCCCCCCh-hHHHHhhhccccCCceEeCcEEEEEcCCCcc
Q psy7718 93 NGVKAIENLMLKRGKFDYILLETTGLADPG-PIAKVFWLDKELGSDIYLDGIVTVVDCKHTI 153 (184)
Q Consensus 93 ~~~~~l~~ll~~~~~~d~iiiE~tg~~dp~-~i~~~l~~~~~~~~~~~l~~vi~vvDa~~~~ 153 (184)
+....+.+.+......|+||+.+.|..... ++.+-+. .+...+.-+.++.|+|+.+.+
T Consensus 161 d~~~i~~~al~~~~~~DvVIIDTAGr~~~d~~lm~El~---~l~~~~~pdevlLVvda~~gq 219 (437)
T PRK00771 161 DAVEIAKEGLEKFKKADVIIVDTAGRHALEEDLIEEMK---EIKEAVKPDEVLLVIDATIGQ 219 (437)
T ss_pred CHHHHHHHHHHHhhcCCEEEEECCCcccchHHHHHHHH---HHHHHhcccceeEEEeccccH
Confidence 333334444444345699999888876532 3332222 112223445688899987643
No 476
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.84 E-value=1.8e-05 Score=64.32 Aligned_cols=32 Identities=25% Similarity=0.350 Sum_probs=26.4
Q ss_pred EEEEEecCCChHHHHHHHHHhcCCCCeEEEEe
Q psy7718 22 VTIITGYLGAGKTTLLNYILTEQHDKKIAVIL 53 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~ 53 (184)
+++|+|++|||||||.+.|.+...+..+.++.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~ 32 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVIC 32 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEE
Confidence 58999999999999999999887665554554
No 477
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.84 E-value=1.7e-05 Score=64.91 Aligned_cols=27 Identities=19% Similarity=0.183 Sum_probs=22.9
Q ss_pred cCccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 18 QPVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 18 ~~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
+..-+++|.|+||||||||.+.|.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 344689999999999999999987754
No 478
>PRK08149 ATP synthase SpaL; Validated
Probab=97.83 E-value=2.4e-05 Score=67.14 Aligned_cols=43 Identities=19% Similarity=0.156 Sum_probs=38.0
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCe
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKK 48 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~ 48 (184)
.+..+++++ |.+.+|+.++|.|++|+|||||++.|++...+..
T Consensus 137 tGi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv 179 (428)
T PRK08149 137 TGVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADV 179 (428)
T ss_pred CCcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCe
Confidence 345789999 9999999999999999999999999998766554
No 479
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.83 E-value=5e-05 Score=61.20 Aligned_cols=37 Identities=38% Similarity=0.485 Sum_probs=29.0
Q ss_pred ecCccEEEEEecCCChHHHHHHHHHhcCCCC--eEEEEe
Q psy7718 17 LQPVPVTIITGYLGAGKTTLLNYILTEQHDK--KIAVIL 53 (184)
Q Consensus 17 v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~--~~~vi~ 53 (184)
++.+..++|+|+-||||||+++.++....+. ++.++.
T Consensus 124 v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iE 162 (270)
T PF00437_consen 124 VRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIE 162 (270)
T ss_dssp HHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEE
T ss_pred cccceEEEEECCCccccchHHHHHhhhccccccceEEec
Confidence 4456789999999999999999999875443 555444
No 480
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.83 E-value=0.0001 Score=64.69 Aligned_cols=39 Identities=26% Similarity=0.388 Sum_probs=29.9
Q ss_pred ecCccEEEEEecCCChHHHHHHHHHhcC--C--CCeEEEEecc
Q psy7718 17 LQPVPVTIITGYLGAGKTTLLNYILTEQ--H--DKKIAVILNE 55 (184)
Q Consensus 17 v~~~~vi~i~G~~GsGKTTll~~L~~~~--~--~~~~~vi~~~ 55 (184)
+.++.+++|+|++|+||||++..|+... . +.++.++..|
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtD 389 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTD 389 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecc
Confidence 4678999999999999999999998642 2 3456666443
No 481
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=97.82 E-value=2.4e-05 Score=67.24 Aligned_cols=46 Identities=22% Similarity=0.148 Sum_probs=40.3
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEE
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAV 51 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~v 51 (184)
.+..+++++ |.+.+|.+++|.|++|+|||||++.|++...+..+.+
T Consensus 141 tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi 186 (433)
T PRK07594 141 TGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL 186 (433)
T ss_pred CCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEE
Confidence 456799999 9999999999999999999999999998877766543
No 482
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.82 E-value=1.7e-05 Score=59.85 Aligned_cols=25 Identities=36% Similarity=0.557 Sum_probs=22.7
Q ss_pred ccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
|.+++|+||+||||||+++.|.+..
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccC
Confidence 5789999999999999999999864
No 483
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=97.81 E-value=1.6e-05 Score=60.39 Aligned_cols=33 Identities=27% Similarity=0.385 Sum_probs=25.6
Q ss_pred CCccccceecCccEEEEEecCCChHHHHHHHHHh
Q psy7718 9 VPDLVPAELQPVPVTIITGYLGAGKTTLLNYILT 42 (184)
Q Consensus 9 ~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~ 42 (184)
.+++++++..+ .+++|+|+||+||||++..|.-
T Consensus 9 ~~~~~~i~f~~-g~~vi~G~Ng~GKStil~ai~~ 41 (202)
T PF13476_consen 9 SFKDLEIDFSP-GLNVIYGPNGSGKSTILEAIRY 41 (202)
T ss_dssp TEEEEEEE--S-EEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcceEEEcCC-CcEEEECCCCCCHHHHHHHHHH
Confidence 34666777755 5999999999999999998864
No 484
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=97.81 E-value=1.9e-05 Score=63.08 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=21.9
Q ss_pred ccEEEEEecCCChHHHHHHHHHhc
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
..+.+|+|+|||||||+++.|...
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~l 48 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFV 48 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 569999999999999999999865
No 485
>PLN02796 D-glycerate 3-kinase
Probab=97.80 E-value=1.1e-05 Score=67.19 Aligned_cols=50 Identities=22% Similarity=0.177 Sum_probs=35.3
Q ss_pred CCCcccccee---cCc-----cEEEEEecCCChHHHHHHHHHhcCCCC---eEEEEecccC
Q psy7718 8 EVPDLVPAEL---QPV-----PVTIITGYLGAGKTTLLNYILTEQHDK---KIAVILNEFG 57 (184)
Q Consensus 8 ~~l~~v~l~v---~~~-----~vi~i~G~~GsGKTTll~~L~~~~~~~---~~~vi~~~~~ 57 (184)
.+++.+++++ ++| -+++|+|++|||||||++.|.+...+. .+.+..+++.
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY 140 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY 140 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence 4567788776 222 359999999999999999999875432 3444455544
No 486
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.80 E-value=7.7e-05 Score=59.05 Aligned_cols=37 Identities=14% Similarity=0.176 Sum_probs=27.3
Q ss_pred ecCccEEEEEecCCChHHHH-HHHHHhcC-CCCeEEEEe
Q psy7718 17 LQPVPVTIITGYLGAGKTTL-LNYILTEQ-HDKKIAVIL 53 (184)
Q Consensus 17 v~~~~vi~i~G~~GsGKTTl-l~~L~~~~-~~~~~~vi~ 53 (184)
++++.++.|+|++|+||||| ++.+.+.. ++.++..+.
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 67899999999999999999 46666543 444444443
No 487
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=97.79 E-value=1.8e-05 Score=73.94 Aligned_cols=34 Identities=35% Similarity=0.393 Sum_probs=31.7
Q ss_pred CCCccccceecCccEEEEEecCCChHHHHHHHHH
Q psy7718 8 EVPDLVPAELQPVPVTIITGYLGAGKTTLLNYIL 41 (184)
Q Consensus 8 ~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~ 41 (184)
..|+++||++++|++++|+|.||||||||++.++
T Consensus 623 ~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l 656 (943)
T PRK00349 623 NNLKNVDVEIPLGKFTCVTGVSGSGKSTLINETL 656 (943)
T ss_pred CCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHH
Confidence 3589999999999999999999999999999875
No 488
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.79 E-value=0.00014 Score=56.91 Aligned_cols=43 Identities=21% Similarity=0.191 Sum_probs=38.2
Q ss_pred CCCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCC
Q psy7718 3 SDSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQH 45 (184)
Q Consensus 3 ~~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~ 45 (184)
+++--.++|++|++++.|++-+++|.+|||||-..+.+.+..+
T Consensus 16 sqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~k 58 (330)
T COG4170 16 SQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNK 58 (330)
T ss_pred CCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccc
Confidence 4455679999999999999999999999999999999998653
No 489
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.79 E-value=3.3e-05 Score=66.63 Aligned_cols=46 Identities=20% Similarity=0.115 Sum_probs=39.5
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEE
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAV 51 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~v 51 (184)
.+..+++++ |.+.+|+.++|.|++|+|||||++.|++...+..+.+
T Consensus 149 TGi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi 194 (440)
T TIGR01026 149 TGVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVI 194 (440)
T ss_pred ceeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEE
Confidence 345789999 9999999999999999999999999998876655433
No 490
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=97.78 E-value=5.2e-05 Score=69.83 Aligned_cols=29 Identities=31% Similarity=0.255 Sum_probs=22.9
Q ss_pred cceec-CccEEEEEecCCChHHHHHHHHHh
Q psy7718 14 PAELQ-PVPVTIITGYLGAGKTTLLNYILT 42 (184)
Q Consensus 14 ~l~v~-~~~vi~i~G~~GsGKTTll~~L~~ 42 (184)
++.+. ...+++|+|||++||||+++.+..
T Consensus 320 di~l~~~~~~~iITGpN~gGKTt~lktigl 349 (782)
T PRK00409 320 DISLGFDKTVLVITGPNTGGKTVTLKTLGL 349 (782)
T ss_pred eeEECCCceEEEEECCCCCCcHHHHHHHHH
Confidence 33444 356899999999999999999863
No 491
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.78 E-value=1.1e-05 Score=61.18 Aligned_cols=34 Identities=26% Similarity=0.310 Sum_probs=28.7
Q ss_pred CCccccceecCccEEEEEecCCChHHHHHHHHHhc
Q psy7718 9 VPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 9 ~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
+|+++++..++.++ +|+|++|||||||++.+.+.
T Consensus 9 ~~~~~~~~~~~~ki-~ilG~~~~GKStLi~~l~~~ 42 (190)
T cd00879 9 VLSSLGLYNKEAKI-LFLGLDNAGKTTLLHMLKDD 42 (190)
T ss_pred HHHHhhcccCCCEE-EEECCCCCCHHHHHHHHhcC
Confidence 57788888776555 99999999999999999863
No 492
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.78 E-value=2.3e-05 Score=56.88 Aligned_cols=28 Identities=43% Similarity=0.542 Sum_probs=25.3
Q ss_pred ecCccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 17 LQPVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 17 v~~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
++++.++.+.|++|||||||++.+++..
T Consensus 19 l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 19 LDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 5678899999999999999999999754
No 493
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.77 E-value=0.00015 Score=60.23 Aligned_cols=26 Identities=38% Similarity=0.492 Sum_probs=22.3
Q ss_pred CccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
...-+.|+|+.|||||||++.|+...
T Consensus 143 ~~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 143 SRLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999999864
No 494
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.77 E-value=2.5e-05 Score=55.03 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=20.9
Q ss_pred EEEEEecCCChHHHHHHHHHhcC
Q psy7718 22 VTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
+++|+|++||||||+.+.|....
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998754
No 495
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=97.76 E-value=3.5e-05 Score=66.20 Aligned_cols=41 Identities=12% Similarity=0.077 Sum_probs=36.0
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCC
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDK 47 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~ 47 (184)
+..+++.+ |.+.+|..++|.|++|+|||||++.|++...+.
T Consensus 149 Gi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d 189 (444)
T PRK08972 149 GVRAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTAD 189 (444)
T ss_pred cceeecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCCCC
Confidence 45678888 999999999999999999999999999876554
No 496
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.75 E-value=4e-05 Score=62.53 Aligned_cols=91 Identities=23% Similarity=0.255 Sum_probs=51.1
Q ss_pred CccEEEEEecCCChHHHHHHHHHhcC---CCCeEEEEecccCCcccccceeEecCCCchhhhhhhhcCcceecccccchH
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTEQ---HDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLELKNGCLCCSVKDNGV 95 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~~---~~~~~~vi~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~gci~~~~~~~~~ 95 (184)
+.-.+.++||-||||||++..++... .+..+--+.+.........+++ +.|. ++.-- -..+.
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skksl-I~QR--------EvG~d------T~sF~ 188 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSL-INQR--------EVGRD------TLSFA 188 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhh-hhHH--------Hhccc------HHHHH
Confidence 34489999999999999999998753 3333333333222111111111 1111 11100 02345
Q ss_pred HHHHHHHHHcCCCCEEEE-ccCCCCCChhHHHHhh
Q psy7718 96 KAIENLMLKRGKFDYILL-ETTGLADPGPIAKVFW 129 (184)
Q Consensus 96 ~~l~~ll~~~~~~d~iii-E~tg~~dp~~i~~~l~ 129 (184)
.+|...++ .+||+|++ |. -|.+.+.-.+.
T Consensus 189 ~aLraALR--eDPDVIlvGEm---RD~ETi~~ALt 218 (353)
T COG2805 189 NALRAALR--EDPDVILVGEM---RDLETIRLALT 218 (353)
T ss_pred HHHHHHhh--cCCCEEEEecc---ccHHHHHHHHH
Confidence 66766653 58999998 75 77777766653
No 497
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.74 E-value=0.00015 Score=59.57 Aligned_cols=28 Identities=36% Similarity=0.457 Sum_probs=23.8
Q ss_pred ecCccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 17 LQPVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 17 v~~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
+....-+.|+|+.||||||+++.|++..
T Consensus 129 v~~~~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 129 VLARKNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred HHcCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3445678899999999999999999864
No 498
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.73 E-value=4.1e-05 Score=58.35 Aligned_cols=32 Identities=25% Similarity=0.476 Sum_probs=26.6
Q ss_pred CccEEEEEecCCChHHHHHHHHHhcCCCCeEEE
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTEQHDKKIAV 51 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~v 51 (184)
+|.+++|+||+|+||||++++|.... +.+..|
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SV 34 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSV 34 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc-CeEEEE
Confidence 68899999999999999999999765 444333
No 499
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.73 E-value=3e-05 Score=55.55 Aligned_cols=28 Identities=39% Similarity=0.602 Sum_probs=24.6
Q ss_pred ecCccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 17 LQPVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 17 v~~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
++++.++.+.|..|||||||.|.++...
T Consensus 12 l~~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 12 LKPGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp HSS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 5788999999999999999999999764
No 500
>PRK05922 type III secretion system ATPase; Validated
Probab=97.72 E-value=5e-05 Score=65.26 Aligned_cols=45 Identities=18% Similarity=0.126 Sum_probs=37.9
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEE
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAV 51 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~v 51 (184)
+-.++|.+ |.+.+|..++|.|+||+|||||++.|++...+..+.+
T Consensus 144 GIr~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~gvi 188 (434)
T PRK05922 144 GIKAIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVI 188 (434)
T ss_pred Cceeecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCCCCceEE
Confidence 45577776 9999999999999999999999999998766655443
Done!