Query psy7718
Match_columns 184
No_of_seqs 193 out of 2339
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 17:02:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7718.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7718hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nij_A Hypothetical protein YJ 99.9 1.5E-22 5.2E-27 165.8 8.5 133 17-154 1-137 (318)
2 2pcj_A ABC transporter, lipopr 99.7 1.4E-18 4.8E-23 135.7 5.4 126 4-129 14-181 (224)
3 3fvq_A Fe(3+) IONS import ATP- 99.7 2.5E-18 8.6E-23 142.7 6.4 124 4-127 14-177 (359)
4 1g6h_A High-affinity branched- 99.7 5.5E-18 1.9E-22 134.9 7.6 125 4-128 17-193 (257)
5 3rlf_A Maltose/maltodextrin im 99.7 4E-18 1.4E-22 142.4 5.2 124 4-127 13-172 (381)
6 3tif_A Uncharacterized ABC tra 99.7 6.1E-18 2.1E-22 133.0 5.9 123 7-129 18-186 (235)
7 1sgw_A Putative ABC transporte 99.7 1.1E-17 3.9E-22 129.8 7.2 124 4-129 20-174 (214)
8 1z47_A CYSA, putative ABC-tran 99.7 9.2E-18 3.2E-22 139.2 7.1 123 5-127 26-184 (355)
9 1vpl_A ABC transporter, ATP-bi 99.7 5.4E-18 1.9E-22 134.9 5.4 125 4-128 25-186 (256)
10 2olj_A Amino acid ABC transpor 99.7 4.3E-18 1.5E-22 136.0 4.7 125 4-128 34-199 (263)
11 2yyz_A Sugar ABC transporter, 99.7 1.4E-17 4.9E-22 138.3 8.0 124 4-127 13-172 (359)
12 1oxx_K GLCV, glucose, ABC tran 99.7 8.6E-18 2.9E-22 139.4 6.3 124 5-128 14-180 (353)
13 3tui_C Methionine import ATP-b 99.7 1.3E-17 4.5E-22 138.6 7.4 122 7-128 41-203 (366)
14 1ji0_A ABC transporter; ATP bi 99.7 2.9E-17 9.9E-22 129.5 8.6 125 4-128 16-179 (240)
15 2nq2_C Hypothetical ABC transp 99.7 2.2E-17 7.5E-22 131.2 7.4 115 6-128 17-168 (253)
16 4g1u_C Hemin import ATP-bindin 99.7 7.1E-18 2.4E-22 135.0 4.4 123 4-128 21-187 (266)
17 1b0u_A Histidine permease; ABC 99.7 1E-17 3.4E-22 133.8 5.2 125 4-128 16-193 (262)
18 1g29_1 MALK, maltose transport 99.7 1.3E-17 4.4E-22 139.2 5.9 124 4-127 13-178 (372)
19 1v43_A Sugar-binding transport 99.7 2.3E-17 7.7E-22 137.7 6.7 124 4-127 21-180 (372)
20 2it1_A 362AA long hypothetical 99.7 1.9E-17 6.6E-22 137.7 5.7 124 4-127 13-172 (362)
21 3gfo_A Cobalt import ATP-bindi 99.7 4.3E-17 1.5E-21 131.0 7.3 122 7-128 21-183 (275)
22 3d31_A Sulfate/molybdate ABC t 99.7 2.5E-17 8.7E-22 136.3 5.8 122 4-127 11-166 (348)
23 2ihy_A ABC transporter, ATP-bi 99.7 4.6E-17 1.6E-21 131.1 5.3 53 4-56 31-83 (279)
24 2onk_A Molybdate/tungstate ABC 99.6 1.2E-16 4.1E-21 126.0 6.1 119 9-128 14-166 (240)
25 2ixe_A Antigen peptide transpo 99.6 3.7E-16 1.2E-20 125.3 8.7 119 7-128 32-196 (271)
26 2ff7_A Alpha-hemolysin translo 99.6 7.6E-16 2.6E-20 121.9 9.0 120 6-128 21-185 (247)
27 2qi9_C Vitamin B12 import ATP- 99.6 2.4E-16 8.1E-21 125.0 5.8 118 8-128 14-173 (249)
28 2pze_A Cystic fibrosis transme 99.6 1.6E-15 5.6E-20 118.6 10.5 50 6-55 20-69 (229)
29 1mv5_A LMRA, multidrug resista 99.6 6.2E-16 2.1E-20 122.0 7.7 81 5-86 13-98 (243)
30 2yz2_A Putative ABC transporte 99.6 4.5E-16 1.6E-20 124.4 6.8 120 7-128 20-178 (266)
31 2cbz_A Multidrug resistance-as 99.6 1.4E-15 4.7E-20 119.7 9.0 50 6-55 17-66 (237)
32 2pjz_A Hypothetical protein ST 99.6 4.9E-16 1.7E-20 124.1 6.1 117 7-129 18-169 (263)
33 2zu0_C Probable ATP-dependent 99.6 7E-16 2.4E-20 123.4 5.4 52 4-55 30-83 (267)
34 3nh6_A ATP-binding cassette SU 99.6 2.7E-15 9.2E-20 122.2 8.1 120 6-128 66-230 (306)
35 2d2e_A SUFC protein; ABC-ATPas 99.6 9.2E-16 3.1E-20 121.6 4.9 52 4-55 13-66 (250)
36 2ghi_A Transport protein; mult 99.6 7.8E-15 2.7E-19 116.9 9.5 118 7-128 33-195 (260)
37 2bbs_A Cystic fibrosis transme 99.5 2.2E-14 7.6E-19 116.0 9.6 50 6-55 50-99 (290)
38 3gd7_A Fusion complex of cysti 99.5 1.9E-14 6.4E-19 120.7 7.9 120 5-128 32-195 (390)
39 3b5x_A Lipid A export ATP-bind 99.5 4.1E-14 1.4E-18 124.2 10.1 119 7-128 356-520 (582)
40 4a82_A Cystic fibrosis transme 99.5 5.7E-14 2E-18 123.2 9.1 119 6-127 353-516 (578)
41 3qf4_A ABC transporter, ATP-bi 99.5 1.1E-13 3.9E-18 121.6 10.7 121 5-128 354-519 (587)
42 3b60_A Lipid A export ATP-bind 99.5 6.6E-14 2.3E-18 122.9 9.0 77 7-84 356-437 (582)
43 2yl4_A ATP-binding cassette SU 99.4 8.2E-14 2.8E-18 122.6 6.9 77 7-84 357-438 (595)
44 3qf4_B Uncharacterized ABC tra 99.4 1.2E-13 4E-18 121.7 6.7 119 6-127 367-530 (598)
45 1xjc_A MOBB protein homolog; s 99.3 5.3E-13 1.8E-17 99.8 2.8 126 19-148 3-136 (169)
46 4f4c_A Multidrug resistance pr 99.3 4E-12 1.4E-16 120.6 8.5 71 6-76 1091-1166(1321)
47 3g5u_A MCG1178, multidrug resi 99.3 7.6E-12 2.6E-16 118.4 10.3 50 7-56 1046-1095(1284)
48 3bk7_A ABC transporter ATP-bin 99.3 7.3E-13 2.5E-17 116.8 2.7 44 9-52 371-414 (607)
49 3g5u_A MCG1178, multidrug resi 99.3 8.7E-12 3E-16 118.0 8.5 69 7-75 403-476 (1284)
50 3ux8_A Excinuclease ABC, A sub 99.3 4.7E-12 1.6E-16 112.8 6.2 32 6-37 30-61 (670)
51 1yqt_A RNAse L inhibitor; ATP- 99.2 1.2E-12 4.1E-17 114.0 1.8 44 9-52 301-344 (538)
52 3ozx_A RNAse L inhibitor; ATP 99.2 4E-12 1.4E-16 110.7 4.6 46 9-54 283-328 (538)
53 4f4c_A Multidrug resistance pr 99.2 2.4E-11 8.1E-16 115.3 9.7 71 5-75 429-504 (1321)
54 2qm8_A GTPase/ATPase; G protei 99.2 3.6E-11 1.2E-15 99.0 7.6 114 7-123 42-163 (337)
55 3j16_B RLI1P; ribosome recycli 99.2 1.9E-11 6.6E-16 107.7 5.2 43 8-50 361-408 (608)
56 1htw_A HI0065; nucleotide-bind 99.2 1.7E-12 6E-17 95.9 -1.4 49 7-56 20-68 (158)
57 1z6g_A Guanylate kinase; struc 99.2 3.1E-11 1.1E-15 93.4 5.6 48 3-51 6-53 (218)
58 1yqt_A RNAse L inhibitor; ATP- 99.2 2.4E-11 8.3E-16 105.8 5.5 46 4-50 31-77 (538)
59 3bk7_A ABC transporter ATP-bin 99.1 1.2E-11 4.1E-16 109.1 2.9 46 4-50 101-147 (607)
60 2iw3_A Elongation factor 3A; a 99.1 2.9E-11 1E-15 111.1 5.4 39 4-42 445-483 (986)
61 2eyu_A Twitching motility prot 99.1 5.6E-11 1.9E-15 94.6 4.4 101 8-129 15-118 (261)
62 2pt7_A CAG-ALFA; ATPase, prote 99.1 1.2E-10 4.1E-15 95.6 5.3 89 9-117 160-251 (330)
63 1s96_A Guanylate kinase, GMP k 99.0 3.2E-10 1.1E-14 87.9 6.0 109 14-129 10-125 (219)
64 3j16_B RLI1P; ribosome recycli 99.0 1.3E-10 4.3E-15 102.6 3.7 42 9-51 93-134 (608)
65 3ozx_A RNAse L inhibitor; ATP 99.0 1.9E-10 6.4E-15 100.2 3.8 42 10-51 14-56 (538)
66 2jeo_A Uridine-cytidine kinase 99.0 1.9E-10 6.4E-15 90.2 3.4 40 5-44 10-49 (245)
67 3thx_A DNA mismatch repair pro 99.0 7.8E-10 2.7E-14 101.5 8.0 102 6-124 648-759 (934)
68 2p67_A LAO/AO transport system 99.0 9.3E-10 3.2E-14 90.5 7.8 130 8-151 44-181 (341)
69 3b9q_A Chloroplast SRP recepto 99.0 4.1E-10 1.4E-14 91.3 5.4 44 10-53 90-133 (302)
70 2iw3_A Elongation factor 3A; a 99.0 3.2E-10 1.1E-14 104.3 4.8 48 7-54 686-733 (986)
71 3ux8_A Excinuclease ABC, A sub 99.0 2.4E-10 8.1E-15 101.8 3.7 35 7-41 335-369 (670)
72 1np6_A Molybdopterin-guanine d 99.0 3.1E-10 1.1E-14 85.0 3.6 121 18-148 4-142 (174)
73 2yhs_A FTSY, cell division pro 98.9 1.4E-09 4.6E-14 93.5 6.1 44 10-53 283-326 (503)
74 3thx_B DNA mismatch repair pro 98.9 1.1E-09 3.7E-14 100.4 5.5 38 5-42 658-695 (918)
75 2npi_A Protein CLP1; CLP1-PCF1 98.9 9.4E-11 3.2E-15 100.2 -2.0 44 11-54 129-174 (460)
76 2og2_A Putative signal recogni 98.9 1.3E-09 4.3E-14 90.5 4.7 43 11-53 148-190 (359)
77 2www_A Methylmalonic aciduria 98.9 8.2E-09 2.8E-13 85.2 9.3 119 19-150 73-198 (349)
78 1cr0_A DNA primase/helicase; R 98.8 2E-09 6.9E-14 86.4 3.9 39 6-44 21-59 (296)
79 1znw_A Guanylate kinase, GMP k 98.8 2.6E-09 8.8E-14 81.6 4.1 37 7-45 9-45 (207)
80 4gp7_A Metallophosphoesterase; 98.8 1.9E-09 6.6E-14 80.1 3.0 30 12-41 1-30 (171)
81 1wb9_A DNA mismatch repair pro 98.8 6.5E-09 2.2E-13 94.2 6.8 37 6-43 594-630 (800)
82 2v9p_A Replication protein E1; 98.8 8.6E-10 2.9E-14 89.6 1.0 43 8-53 114-156 (305)
83 1ewq_A DNA mismatch repair pro 98.8 7.6E-10 2.6E-14 99.8 0.6 35 6-43 565-599 (765)
84 3aez_A Pantothenate kinase; tr 98.8 7.2E-09 2.5E-13 84.4 6.2 30 17-46 87-116 (312)
85 3jvv_A Twitching mobility prot 98.8 9.2E-09 3.2E-13 85.2 6.7 40 7-46 103-149 (356)
86 3euj_A Chromosome partition pr 98.8 9.3E-10 3.2E-14 94.4 0.5 47 7-54 17-63 (483)
87 2gza_A Type IV secretion syste 98.8 1.7E-09 5.8E-14 89.7 2.0 47 10-56 165-211 (361)
88 4aby_A DNA repair protein RECN 98.8 1.5E-08 5.3E-13 84.7 7.4 36 7-43 48-83 (415)
89 4a74_A DNA repair and recombin 98.7 2E-09 7E-14 82.5 1.8 28 16-43 21-48 (231)
90 3lnc_A Guanylate kinase, GMP k 98.7 2.9E-09 1E-13 82.5 2.6 38 8-45 15-53 (231)
91 2ewv_A Twitching motility prot 98.7 7.3E-09 2.5E-13 86.3 5.0 99 9-128 127-228 (372)
92 1ye8_A Protein THEP1, hypothet 98.7 1.3E-08 4.3E-13 76.4 5.4 23 22-44 2-24 (178)
93 2obl_A ESCN; ATPase, hydrolase 98.7 6.4E-09 2.2E-13 85.9 4.0 48 6-54 58-105 (347)
94 3tr0_A Guanylate kinase, GMP k 98.7 6.9E-09 2.4E-13 78.4 3.6 32 14-45 1-32 (205)
95 1tq4_A IIGP1, interferon-induc 98.7 7.2E-10 2.5E-14 93.5 -2.1 45 7-51 36-100 (413)
96 2dpy_A FLII, flagellum-specifi 98.7 7.4E-09 2.5E-13 88.0 3.9 50 6-56 144-193 (438)
97 2w0m_A SSO2452; RECA, SSPF, un 98.7 8.7E-09 3E-13 78.9 2.7 49 6-54 8-59 (235)
98 1rj9_A FTSY, signal recognitio 98.6 4.7E-08 1.6E-12 79.3 6.8 35 19-53 101-135 (304)
99 3pih_A Uvrabc system protein A 98.6 4.4E-08 1.5E-12 89.8 7.3 31 7-37 597-627 (916)
100 1tf7_A KAIC; homohexamer, hexa 98.6 9E-09 3.1E-13 89.2 2.6 51 5-55 23-76 (525)
101 2o8b_B DNA mismatch repair pro 98.6 1.2E-08 4.1E-13 94.6 3.5 38 5-43 767-811 (1022)
102 2qag_B Septin-6, protein NEDD5 98.6 8.6E-09 2.9E-13 87.2 1.9 39 4-43 25-65 (427)
103 3e70_C DPA, signal recognition 98.6 3.2E-08 1.1E-12 81.1 5.3 119 16-153 125-255 (328)
104 3vaa_A Shikimate kinase, SK; s 98.6 1.8E-08 6.3E-13 76.3 3.5 39 6-44 11-49 (199)
105 3b85_A Phosphate starvation-in 98.6 3.3E-10 1.1E-14 87.2 -6.4 40 7-51 13-52 (208)
106 1sq5_A Pantothenate kinase; P- 98.6 6.3E-09 2.1E-13 84.4 0.7 46 8-53 49-115 (308)
107 1pzn_A RAD51, DNA repair and r 98.5 3.2E-08 1.1E-12 81.7 3.3 112 9-122 119-247 (349)
108 2oap_1 GSPE-2, type II secreti 98.5 2.1E-08 7.3E-13 86.7 1.8 49 8-56 248-296 (511)
109 3szr_A Interferon-induced GTP- 98.5 1.5E-07 5E-12 83.1 6.4 35 20-54 45-80 (608)
110 3sop_A Neuronal-specific septi 98.5 6E-08 2.1E-12 77.3 3.0 66 22-87 4-71 (270)
111 2ehv_A Hypothetical protein PH 98.5 1.3E-07 4.5E-12 73.2 4.9 47 7-53 16-66 (251)
112 1zp6_A Hypothetical protein AT 98.5 1.6E-07 5.3E-12 70.1 5.0 28 16-43 5-32 (191)
113 1ls1_A Signal recognition part 98.4 9.3E-07 3.2E-11 71.2 9.6 44 11-56 91-136 (295)
114 2wsm_A Hydrogenase expression/ 98.4 6.3E-08 2.2E-12 73.9 2.2 113 18-152 28-142 (221)
115 1zu4_A FTSY; GTPase, signal re 98.4 9.7E-07 3.3E-11 72.0 9.2 47 10-56 95-143 (320)
116 3nwj_A ATSK2; P loop, shikimat 98.4 2.5E-08 8.6E-13 78.7 -0.5 40 5-44 30-72 (250)
117 3p32_A Probable GTPase RV1496/ 98.4 5.6E-07 1.9E-11 74.2 7.3 119 18-151 77-204 (355)
118 1lvg_A Guanylate kinase, GMP k 98.4 1.2E-07 4E-12 72.0 2.9 29 17-45 1-29 (198)
119 3asz_A Uridine kinase; cytidin 98.4 1.9E-07 6.5E-12 70.9 3.7 36 17-53 3-38 (211)
120 2j41_A Guanylate kinase; GMP, 98.4 2.8E-07 9.7E-12 69.4 4.6 33 15-47 1-33 (207)
121 2px0_A Flagellar biosynthesis 98.4 1E-06 3.6E-11 71.0 7.9 39 18-56 103-144 (296)
122 2ffh_A Protein (FFH); SRP54, s 98.4 9.4E-07 3.2E-11 74.7 7.9 127 11-152 91-223 (425)
123 3c8u_A Fructokinase; YP_612366 98.3 2E-07 7E-12 70.9 3.1 29 17-45 19-47 (208)
124 1lw7_A Transcriptional regulat 98.3 1.8E-07 6.1E-12 77.4 3.0 40 9-48 157-198 (365)
125 3dm5_A SRP54, signal recogniti 98.3 8.5E-07 2.9E-11 75.3 7.2 122 19-153 99-226 (443)
126 2cvh_A DNA repair and recombin 98.3 3.6E-07 1.2E-11 69.4 4.4 46 7-53 6-52 (220)
127 1yrb_A ATP(GTP)binding protein 98.3 8.2E-07 2.8E-11 69.4 6.2 128 18-152 12-150 (262)
128 3a00_A Guanylate kinase, GMP k 98.3 1.6E-07 5.4E-12 70.3 1.9 26 20-45 1-26 (186)
129 1p9r_A General secretion pathw 98.3 1.2E-07 4.1E-12 80.1 0.8 43 9-53 158-200 (418)
130 3kta_A Chromosome segregation 98.3 4.9E-07 1.7E-11 67.0 4.1 33 11-44 18-50 (182)
131 2hf9_A Probable hydrogenase ni 98.3 6.4E-07 2.2E-11 68.4 4.7 92 19-118 37-129 (226)
132 2rcn_A Probable GTPase ENGC; Y 98.3 3.7E-07 1.3E-11 75.5 3.5 74 9-83 205-281 (358)
133 3uie_A Adenylyl-sulfate kinase 98.3 2E-07 6.7E-12 70.6 1.6 38 7-44 12-49 (200)
134 1vma_A Cell division protein F 98.3 2.2E-06 7.6E-11 69.5 7.9 44 12-55 96-141 (306)
135 1pui_A ENGB, probable GTP-bind 98.3 2.6E-07 8.9E-12 69.7 2.0 35 8-44 16-50 (210)
136 1kgd_A CASK, peripheral plasma 98.3 5.4E-07 1.8E-11 67.1 3.7 27 19-45 4-30 (180)
137 2qnr_A Septin-2, protein NEDD5 98.2 4.3E-07 1.5E-11 73.4 3.1 41 3-49 7-48 (301)
138 3tau_A Guanylate kinase, GMP k 98.2 8.2E-07 2.8E-11 67.7 4.1 29 18-46 6-34 (208)
139 2ygr_A Uvrabc system protein A 98.2 3.8E-07 1.3E-11 83.9 2.4 34 8-41 656-689 (993)
140 1t9h_A YLOQ, probable GTPase E 98.2 3.3E-07 1.1E-11 74.4 1.7 39 15-53 168-206 (307)
141 2qag_C Septin-7; cell cycle, c 98.2 9.5E-07 3.3E-11 74.6 4.5 37 3-45 20-56 (418)
142 4eun_A Thermoresistant glucoki 98.2 7.9E-07 2.7E-11 67.2 3.5 30 15-44 24-53 (200)
143 1u0l_A Probable GTPase ENGC; p 98.2 6E-07 2E-11 72.5 2.9 39 15-53 164-202 (301)
144 2x8a_A Nuclear valosin-contain 98.2 6.7E-07 2.3E-11 71.3 2.7 38 7-46 33-70 (274)
145 2r6f_A Excinuclease ABC subuni 98.2 3.7E-07 1.3E-11 83.8 1.3 34 8-41 638-671 (972)
146 1j8m_F SRP54, signal recogniti 98.2 4.8E-06 1.7E-10 67.1 7.5 128 11-152 89-225 (297)
147 3kl4_A SRP54, signal recogniti 98.1 9.1E-06 3.1E-10 68.8 9.4 120 19-153 96-225 (433)
148 2vf7_A UVRA2, excinuclease ABC 98.1 3.4E-07 1.2E-11 83.3 0.3 34 9-42 512-546 (842)
149 2i3b_A HCR-ntpase, human cance 98.1 1.1E-06 3.8E-11 66.4 2.9 26 20-45 1-26 (189)
150 1svm_A Large T antigen; AAA+ f 98.1 6.7E-07 2.3E-11 74.5 1.6 38 8-45 157-194 (377)
151 2f1r_A Molybdopterin-guanine d 98.1 8.2E-07 2.8E-11 66.1 1.7 36 20-55 2-40 (171)
152 2o5v_A DNA replication and rep 98.1 1.8E-06 6.3E-11 71.4 3.9 35 7-42 14-48 (359)
153 2bdt_A BH3686; alpha-beta prot 98.1 1.6E-06 5.4E-11 64.7 3.1 24 20-43 2-25 (189)
154 3ec2_A DNA replication protein 98.1 1.4E-06 4.8E-11 64.5 2.7 31 14-44 32-62 (180)
155 1kag_A SKI, shikimate kinase I 98.1 1.6E-06 5.6E-11 63.4 3.1 28 18-45 2-29 (173)
156 2qpt_A EH domain-containing pr 98.1 1.6E-05 5.6E-10 69.2 9.4 116 18-152 63-201 (550)
157 2yv5_A YJEQ protein; hydrolase 98.0 1.5E-06 5.1E-11 70.2 2.3 37 16-53 161-197 (302)
158 3qf7_A RAD50; ABC-ATPase, ATPa 98.0 2E-06 6.7E-11 71.3 3.0 32 9-41 13-44 (365)
159 3ney_A 55 kDa erythrocyte memb 98.0 3E-06 1E-10 64.5 3.6 31 15-45 14-44 (197)
160 1rz3_A Hypothetical protein rb 98.0 1.6E-06 5.3E-11 65.7 1.8 29 16-44 18-46 (201)
161 1udx_A The GTP-binding protein 98.0 1.6E-06 5.4E-11 73.2 2.0 34 10-43 147-180 (416)
162 2vp4_A Deoxynucleoside kinase; 98.0 2.9E-06 1E-10 65.6 3.3 32 12-43 12-43 (230)
163 1ixz_A ATP-dependent metallopr 98.0 3.5E-06 1.2E-10 65.7 3.7 36 8-45 39-74 (254)
164 1iy2_A ATP-dependent metallopr 98.0 3.1E-06 1.1E-10 67.1 3.2 36 8-45 63-98 (278)
165 3tqc_A Pantothenate kinase; bi 98.0 2.4E-06 8.2E-11 69.7 2.5 35 10-44 76-116 (321)
166 1y63_A LMAJ004144AAA protein; 98.0 4.2E-06 1.4E-10 62.3 3.6 32 12-43 2-33 (184)
167 1knq_A Gluconate kinase; ALFA/ 98.0 4.4E-06 1.5E-10 61.4 3.4 27 18-44 6-32 (175)
168 1qhl_A Protein (cell division 98.0 1.1E-07 3.6E-12 74.1 -5.8 39 14-53 22-60 (227)
169 2bbw_A Adenylate kinase 4, AK4 97.9 4.8E-06 1.6E-10 64.8 3.5 33 19-51 26-61 (246)
170 2j37_W Signal recognition part 97.9 2.9E-05 9.8E-10 67.0 8.2 121 18-153 99-227 (504)
171 4e22_A Cytidylate kinase; P-lo 97.9 5.6E-06 1.9E-10 64.9 3.5 25 17-41 24-48 (252)
172 1in4_A RUVB, holliday junction 97.9 1E-06 3.4E-11 72.0 -1.4 40 5-44 29-75 (334)
173 2qor_A Guanylate kinase; phosp 97.9 6.9E-06 2.4E-10 62.1 3.2 30 16-45 8-37 (204)
174 4eaq_A DTMP kinase, thymidylat 97.9 5.4E-06 1.8E-10 64.3 2.6 39 7-45 10-51 (229)
175 1n0w_A DNA repair protein RAD5 97.9 1.5E-05 5.3E-10 61.1 5.0 27 17-43 21-47 (243)
176 2qt1_A Nicotinamide riboside k 97.8 9.6E-06 3.3E-10 61.3 3.7 31 15-45 16-46 (207)
177 1cke_A CK, MSSA, protein (cyti 97.8 9.9E-06 3.4E-10 61.8 3.6 26 19-44 4-29 (227)
178 1oix_A RAS-related protein RAB 97.8 2.5E-05 8.4E-10 58.2 5.0 24 21-44 30-53 (191)
179 1f2t_A RAD50 ABC-ATPase; DNA d 97.8 1.4E-05 4.9E-10 57.8 3.6 31 11-42 15-45 (149)
180 1ni3_A YCHF GTPase, YCHF GTP-b 97.8 3E-05 1E-09 64.9 5.7 27 16-42 16-42 (392)
181 1e69_A Chromosome segregation 97.8 9.5E-06 3.2E-10 65.9 2.4 31 11-42 16-46 (322)
182 2xxa_A Signal recognition part 97.7 0.00018 6.1E-09 60.9 10.3 122 18-152 98-226 (433)
183 2v3c_C SRP54, signal recogniti 97.7 5.1E-05 1.7E-09 64.3 6.6 120 20-152 99-223 (432)
184 2kjq_A DNAA-related protein; s 97.7 1.1E-05 3.6E-10 58.5 2.0 26 19-44 35-60 (149)
185 1jjv_A Dephospho-COA kinase; P 97.7 1.9E-05 6.4E-10 59.5 3.2 22 21-42 3-24 (206)
186 1w1w_A Structural maintenance 97.7 2.3E-05 7.8E-10 66.0 3.9 32 15-46 21-52 (430)
187 1nlf_A Regulatory protein REPA 97.7 2.7E-05 9.2E-10 61.7 3.8 28 16-43 26-53 (279)
188 2pez_A Bifunctional 3'-phospho 97.7 2.6E-05 8.8E-10 57.5 3.4 27 18-44 3-29 (179)
189 2if2_A Dephospho-COA kinase; a 97.7 2.7E-05 9.1E-10 58.5 3.4 22 21-42 2-23 (204)
190 3cm0_A Adenylate kinase; ATP-b 97.6 2.7E-05 9.2E-10 57.5 3.2 27 17-43 1-27 (186)
191 3t61_A Gluconokinase; PSI-biol 97.6 2.7E-05 9.2E-10 58.5 3.2 25 20-44 18-42 (202)
192 1m2o_B GTP-binding protein SAR 97.6 3.3E-05 1.1E-09 57.4 3.5 35 8-43 12-46 (190)
193 3cr8_A Sulfate adenylyltranfer 97.6 2.3E-05 8E-10 68.3 2.9 32 16-47 365-396 (552)
194 2yvu_A Probable adenylyl-sulfa 97.6 4E-05 1.4E-09 56.8 3.5 30 15-44 8-37 (186)
195 1qhx_A CPT, protein (chloramph 97.6 4.3E-05 1.5E-09 55.9 3.5 26 20-45 3-28 (178)
196 2rhm_A Putative kinase; P-loop 97.6 4.6E-05 1.6E-09 56.4 3.6 28 17-44 2-29 (193)
197 2v54_A DTMP kinase, thymidylat 97.5 5.5E-05 1.9E-09 56.6 3.8 28 17-44 1-28 (204)
198 2f9l_A RAB11B, member RAS onco 97.5 4.2E-05 1.4E-09 57.1 3.1 23 21-43 6-28 (199)
199 3t34_A Dynamin-related protein 97.5 6.5E-05 2.2E-09 61.7 4.3 34 7-43 24-57 (360)
200 3kb2_A SPBC2 prophage-derived 97.5 5.5E-05 1.9E-09 54.8 3.3 23 21-43 2-24 (173)
201 3k1j_A LON protease, ATP-depen 97.5 1.7E-05 5.7E-10 69.8 0.5 44 5-48 45-88 (604)
202 1f6b_A SAR1; gtpases, N-termin 97.5 1.7E-05 5.8E-10 59.4 0.5 35 7-42 13-47 (198)
203 2dr3_A UPF0273 protein PH0284; 97.5 6.3E-05 2.2E-09 57.7 3.6 49 6-54 8-59 (247)
204 1odf_A YGR205W, hypothetical 3 97.5 5.6E-05 1.9E-09 60.7 3.4 28 18-45 29-56 (290)
205 1vht_A Dephospho-COA kinase; s 97.5 6E-05 2.1E-09 57.3 3.4 25 18-42 2-26 (218)
206 1m7g_A Adenylylsulfate kinase; 97.5 4.9E-05 1.7E-09 57.6 2.8 31 15-45 20-50 (211)
207 1ega_A Protein (GTP-binding pr 97.5 4.8E-05 1.7E-09 61.2 2.9 29 15-43 3-31 (301)
208 1nn5_A Similar to deoxythymidy 97.5 7.4E-05 2.5E-09 56.2 3.8 28 16-43 5-32 (215)
209 1tf7_A KAIC; homohexamer, hexa 97.5 6.4E-05 2.2E-09 64.9 3.9 31 14-44 275-305 (525)
210 3hr8_A Protein RECA; alpha and 97.5 0.00036 1.2E-08 57.6 8.1 36 17-52 58-95 (356)
211 1ex7_A Guanylate kinase; subst 97.5 6.2E-05 2.1E-09 56.6 3.1 23 22-44 3-25 (186)
212 3iij_A Coilin-interacting nucl 97.5 5.6E-05 1.9E-09 55.6 2.9 28 17-44 8-35 (180)
213 2vf7_A UVRA2, excinuclease ABC 97.5 5.3E-05 1.8E-09 69.0 3.1 29 9-37 25-53 (842)
214 4ad8_A DNA repair protein RECN 97.5 3.3E-05 1.1E-09 66.7 1.6 36 7-43 48-83 (517)
215 3qks_A DNA double-strand break 97.4 7.8E-05 2.7E-09 56.6 3.5 30 11-41 15-44 (203)
216 2wwf_A Thymidilate kinase, put 97.4 9E-05 3.1E-09 55.7 3.8 27 17-43 7-33 (212)
217 2c95_A Adenylate kinase 1; tra 97.4 8.3E-05 2.8E-09 55.1 3.5 28 17-44 6-33 (196)
218 3lw7_A Adenylate kinase relate 97.4 7.7E-05 2.6E-09 53.9 3.1 20 21-40 2-21 (179)
219 3m6a_A ATP-dependent protease 97.4 4.5E-05 1.5E-09 66.3 2.2 42 9-51 98-139 (543)
220 2gj8_A MNME, tRNA modification 97.4 9.5E-05 3.3E-09 54.0 3.4 25 19-43 3-27 (172)
221 2dhr_A FTSH; AAA+ protein, hex 97.4 0.00017 5.8E-09 62.1 5.1 37 7-45 53-89 (499)
222 2zr9_A Protein RECA, recombina 97.4 0.00035 1.2E-08 57.4 6.8 39 17-55 58-98 (349)
223 1kht_A Adenylate kinase; phosp 97.4 0.00011 3.7E-09 54.2 3.4 24 20-43 3-26 (192)
224 1sxj_C Activator 1 40 kDa subu 97.4 2.4E-05 8.3E-10 63.6 -0.3 38 7-44 31-70 (340)
225 2plr_A DTMP kinase, probable t 97.3 0.00012 4E-09 54.9 3.4 26 19-44 3-28 (213)
226 2ygr_A Uvrabc system protein A 97.3 0.0001 3.5E-09 68.0 3.4 29 9-37 35-63 (993)
227 2r6f_A Excinuclease ABC subuni 97.3 0.0001 3.5E-09 67.8 3.4 29 9-37 33-61 (972)
228 1uf9_A TT1252 protein; P-loop, 97.3 0.00015 5E-09 54.1 3.7 24 20-43 8-31 (203)
229 2bwj_A Adenylate kinase 5; pho 97.3 6.6E-05 2.3E-09 55.8 1.7 30 15-44 7-36 (199)
230 2p5t_B PEZT; postsegregational 97.3 0.00011 3.9E-09 57.3 3.2 30 16-45 28-57 (253)
231 1via_A Shikimate kinase; struc 97.3 0.00011 3.7E-09 53.9 2.8 24 21-44 5-28 (175)
232 1gvn_B Zeta; postsegregational 97.3 0.00015 5E-09 58.0 3.9 28 18-45 31-58 (287)
233 3pih_A Uvrabc system protein A 97.3 9.6E-05 3.3E-09 67.9 3.1 29 9-37 13-41 (916)
234 2wji_A Ferrous iron transport 97.3 0.00013 4.4E-09 52.8 3.2 23 21-43 4-26 (165)
235 1gtv_A TMK, thymidylate kinase 97.3 5.7E-05 1.9E-09 56.9 1.3 23 22-44 2-24 (214)
236 3trf_A Shikimate kinase, SK; a 97.3 0.00014 4.8E-09 53.6 3.4 26 19-44 4-29 (185)
237 2ga8_A Hypothetical 39.9 kDa p 97.3 4.7E-05 1.6E-09 62.8 0.8 35 9-43 11-47 (359)
238 3a4m_A L-seryl-tRNA(SEC) kinas 97.3 0.00014 4.9E-09 57.0 3.4 27 17-43 1-27 (260)
239 1q3t_A Cytidylate kinase; nucl 97.3 0.00016 5.5E-09 55.7 3.6 26 18-43 14-39 (236)
240 1ly1_A Polynucleotide kinase; 97.2 0.00017 5.9E-09 52.5 3.2 22 21-42 3-24 (181)
241 3qkt_A DNA double-strand break 97.2 0.00017 5.8E-09 58.9 3.3 28 13-41 17-44 (339)
242 2wjg_A FEOB, ferrous iron tran 97.2 0.00019 6.5E-09 52.6 3.3 24 20-43 7-30 (188)
243 1qf9_A UMP/CMP kinase, protein 97.2 0.00024 8E-09 52.3 3.7 24 20-43 6-29 (194)
244 1nks_A Adenylate kinase; therm 97.2 0.00021 7.2E-09 52.6 3.4 24 21-44 2-25 (194)
245 2jaq_A Deoxyguanosine kinase; 97.2 0.00019 6.6E-09 53.3 3.2 23 22-44 2-24 (205)
246 2vli_A Antibiotic resistance p 97.2 0.00015 5.1E-09 53.2 2.2 26 19-44 4-29 (183)
247 2ze6_A Isopentenyl transferase 97.2 0.00021 7.1E-09 56.0 3.1 24 21-44 2-25 (253)
248 3lda_A DNA repair protein RAD5 97.2 0.00025 8.4E-09 59.5 3.7 25 17-41 175-199 (400)
249 1sxj_E Activator 1 40 kDa subu 97.1 0.00015 5E-09 58.9 2.2 34 18-51 34-68 (354)
250 1tev_A UMP-CMP kinase; ploop, 97.1 0.00026 9E-09 52.1 3.2 24 20-43 3-26 (196)
251 3ice_A Transcription terminati 97.1 0.0003 1E-08 58.8 3.8 32 12-43 166-197 (422)
252 1ukz_A Uridylate kinase; trans 97.1 0.00028 9.6E-09 52.8 3.3 28 17-44 12-39 (203)
253 1zd8_A GTP:AMP phosphotransfer 97.1 0.00031 1E-08 53.7 3.5 27 18-44 5-31 (227)
254 3auy_A DNA double-strand break 97.1 0.00024 8.3E-09 58.6 3.2 30 11-41 17-46 (371)
255 3ake_A Cytidylate kinase; CMP 97.1 0.0003 1E-08 52.6 3.3 23 21-43 3-25 (208)
256 2zej_A Dardarin, leucine-rich 97.1 0.00025 8.5E-09 52.2 2.6 22 22-43 4-25 (184)
257 1uj2_A Uridine-cytidine kinase 97.1 0.00033 1.1E-08 54.5 3.4 25 19-43 21-45 (252)
258 2z0h_A DTMP kinase, thymidylat 97.1 0.00033 1.1E-08 51.8 3.2 23 22-44 2-24 (197)
259 1lv7_A FTSH; alpha/beta domain 97.1 0.00032 1.1E-08 54.5 3.3 24 22-45 47-70 (257)
260 3bh0_A DNAB-like replicative h 97.1 0.00049 1.7E-08 55.6 4.4 50 8-57 56-107 (315)
261 3r20_A Cytidylate kinase; stru 97.1 0.00034 1.2E-08 54.4 3.4 25 19-43 8-32 (233)
262 1aky_A Adenylate kinase; ATP:A 97.0 0.00038 1.3E-08 52.8 3.5 26 19-44 3-28 (220)
263 1zak_A Adenylate kinase; ATP:A 97.0 0.00038 1.3E-08 53.0 3.4 26 19-44 4-29 (222)
264 2iyv_A Shikimate kinase, SK; t 97.0 0.00031 1.1E-08 51.7 2.8 24 20-43 2-25 (184)
265 3k53_A Ferrous iron transport 97.0 0.00041 1.4E-08 54.6 3.6 24 20-43 3-26 (271)
266 2lkc_A Translation initiation 97.0 0.00047 1.6E-08 49.8 3.6 26 18-43 6-31 (178)
267 1svi_A GTP-binding protein YSX 97.0 0.00053 1.8E-08 50.4 3.9 25 19-43 22-46 (195)
268 2dyk_A GTP-binding protein; GT 97.0 0.00041 1.4E-08 49.2 3.2 23 21-43 2-24 (161)
269 3lxx_A GTPase IMAP family memb 97.0 0.00039 1.3E-08 53.5 3.3 25 20-44 29-53 (239)
270 1e6c_A Shikimate kinase; phosp 97.0 0.00036 1.2E-08 50.6 2.9 24 21-44 3-26 (173)
271 2pbr_A DTMP kinase, thymidylat 97.0 0.00041 1.4E-08 51.1 3.2 23 22-44 2-24 (195)
272 2ged_A SR-beta, signal recogni 97.0 0.00049 1.7E-08 50.6 3.6 26 19-44 47-72 (193)
273 2cdn_A Adenylate kinase; phosp 97.0 0.00049 1.7E-08 51.4 3.6 26 19-44 19-44 (201)
274 3pqc_A Probable GTP-binding pr 97.0 0.00058 2E-08 50.0 3.9 25 19-43 22-46 (195)
275 1a7j_A Phosphoribulokinase; tr 97.0 0.0002 6.7E-09 57.4 1.2 25 19-43 4-28 (290)
276 3fb4_A Adenylate kinase; psych 96.9 0.0005 1.7E-08 51.9 3.2 23 22-44 2-24 (216)
277 2qtf_A Protein HFLX, GTP-bindi 96.9 0.00048 1.7E-08 56.9 3.3 25 20-44 179-203 (364)
278 2fv8_A H6, RHO-related GTP-bin 96.9 0.00049 1.7E-08 51.5 3.0 35 9-43 14-48 (207)
279 2dy1_A Elongation factor G; tr 96.9 0.00052 1.8E-08 61.0 3.5 30 14-43 3-32 (665)
280 2pt5_A Shikimate kinase, SK; a 96.9 0.00056 1.9E-08 49.4 3.1 22 22-43 2-23 (168)
281 3tlx_A Adenylate kinase 2; str 96.9 0.00056 1.9E-08 53.1 3.3 27 18-44 27-53 (243)
282 1upt_A ARL1, ADP-ribosylation 96.9 0.00066 2.3E-08 48.6 3.4 26 18-43 5-30 (171)
283 2ce2_X GTPase HRAS; signaling 96.9 0.0006 2.1E-08 48.2 3.2 22 22-43 5-26 (166)
284 4ag6_A VIRB4 ATPase, type IV s 96.9 0.00041 1.4E-08 57.5 2.5 25 19-43 34-58 (392)
285 3v9p_A DTMP kinase, thymidylat 96.9 0.00048 1.6E-08 53.3 2.6 29 16-44 21-49 (227)
286 3bgw_A DNAB-like replicative h 96.9 0.0025 8.7E-08 53.9 7.3 43 17-59 194-238 (444)
287 2grj_A Dephospho-COA kinase; T 96.9 0.00063 2.1E-08 51.2 3.2 24 20-43 12-35 (192)
288 2f6r_A COA synthase, bifunctio 96.9 0.00068 2.3E-08 53.9 3.5 23 20-42 75-97 (281)
289 3zvl_A Bifunctional polynucleo 96.8 0.00069 2.4E-08 56.8 3.7 31 14-44 252-282 (416)
290 3dl0_A Adenylate kinase; phosp 96.8 0.00063 2.2E-08 51.3 3.2 23 22-44 2-24 (216)
291 2oil_A CATX-8, RAS-related pro 96.8 0.00054 1.8E-08 50.4 2.8 25 19-43 24-48 (193)
292 1z2a_A RAS-related protein RAB 96.8 0.00062 2.1E-08 48.5 3.0 23 21-43 6-28 (168)
293 2ew1_A RAS-related protein RAB 96.8 0.00064 2.2E-08 51.0 3.0 24 20-43 26-49 (201)
294 2fn4_A P23, RAS-related protei 96.8 0.00082 2.8E-08 48.5 3.5 23 21-43 10-32 (181)
295 1nrj_B SR-beta, signal recogni 96.8 0.00083 2.8E-08 50.4 3.6 26 19-44 11-36 (218)
296 2ohf_A Protein OLA1, GTP-bindi 96.8 0.0011 3.8E-08 55.4 4.6 28 16-43 18-45 (396)
297 2erx_A GTP-binding protein DI- 96.8 0.00069 2.4E-08 48.4 3.0 22 22-43 5-26 (172)
298 1u8z_A RAS-related protein RAL 96.8 0.00069 2.4E-08 48.1 3.0 23 21-43 5-27 (168)
299 1zuh_A Shikimate kinase; alpha 96.8 0.00075 2.6E-08 48.9 3.2 25 19-43 6-30 (168)
300 3cf0_A Transitional endoplasmi 96.8 0.00098 3.3E-08 53.3 4.1 30 16-45 45-74 (301)
301 1kao_A RAP2A; GTP-binding prot 96.8 0.00071 2.4E-08 48.0 3.0 22 22-43 5-26 (167)
302 1g16_A RAS-related protein SEC 96.8 0.00078 2.7E-08 48.0 3.2 22 22-43 5-26 (170)
303 2ius_A DNA translocase FTSK; n 96.8 0.001 3.6E-08 57.3 4.4 46 12-57 159-208 (512)
304 4dhe_A Probable GTP-binding pr 96.8 0.0006 2E-08 51.4 2.6 25 19-43 28-52 (223)
305 3q72_A GTP-binding protein RAD 96.8 0.00067 2.3E-08 48.4 2.7 22 22-43 4-25 (166)
306 3d3q_A TRNA delta(2)-isopenten 96.8 0.0013 4.4E-08 53.9 4.7 25 21-45 8-32 (340)
307 3iby_A Ferrous iron transport 96.8 0.00087 3E-08 52.5 3.5 23 21-43 2-24 (256)
308 2o52_A RAS-related protein RAB 96.8 0.00072 2.5E-08 50.3 2.9 24 20-43 25-48 (200)
309 1ek0_A Protein (GTP-binding pr 96.8 0.00077 2.6E-08 48.0 3.0 22 22-43 5-26 (170)
310 1ky3_A GTP-binding protein YPT 96.8 0.00084 2.9E-08 48.4 3.2 24 20-43 8-31 (182)
311 1z0j_A RAB-22, RAS-related pro 96.8 0.00078 2.7E-08 48.1 3.0 22 22-43 8-29 (170)
312 1z08_A RAS-related protein RAB 96.8 0.00077 2.6E-08 48.2 3.0 23 21-43 7-29 (170)
313 3bwd_D RAC-like GTP-binding pr 96.8 0.00098 3.4E-08 48.2 3.5 26 18-43 6-31 (182)
314 2nzj_A GTP-binding protein REM 96.7 0.00078 2.7E-08 48.4 2.9 23 21-43 5-27 (175)
315 1jwy_B Dynamin A GTPase domain 96.7 0.0012 4E-08 52.7 4.2 26 19-44 23-48 (315)
316 1fzq_A ADP-ribosylation factor 96.7 0.00084 2.9E-08 49.2 3.1 25 19-43 15-39 (181)
317 1mky_A Probable GTP-binding pr 96.7 0.0015 5.2E-08 55.0 5.1 25 20-44 180-204 (439)
318 1wms_A RAB-9, RAB9, RAS-relate 96.7 0.0008 2.7E-08 48.5 3.0 23 21-43 8-30 (177)
319 1c1y_A RAS-related protein RAP 96.7 0.00085 2.9E-08 47.7 3.0 22 22-43 5-26 (167)
320 2cxx_A Probable GTP-binding pr 96.7 0.00088 3E-08 48.8 3.1 22 22-43 3-24 (190)
321 2e87_A Hypothetical protein PH 96.7 0.00084 2.9E-08 55.1 3.2 26 18-43 165-190 (357)
322 1ypw_A Transitional endoplasmi 96.7 0.0011 3.7E-08 60.2 4.2 32 15-46 233-264 (806)
323 1moz_A ARL1, ADP-ribosylation 96.7 0.00069 2.4E-08 49.2 2.4 25 18-42 16-40 (183)
324 2y8e_A RAB-protein 6, GH09086P 96.7 0.00097 3.3E-08 48.0 3.2 22 22-43 16-37 (179)
325 3tmk_A Thymidylate kinase; pho 96.7 0.0012 4.1E-08 50.7 3.8 30 17-46 2-31 (216)
326 3q85_A GTP-binding protein REM 96.7 0.00089 3.1E-08 47.8 2.9 22 22-43 4-25 (169)
327 3be4_A Adenylate kinase; malar 96.7 0.001 3.6E-08 50.4 3.4 25 20-44 5-29 (217)
328 1r2q_A RAS-related protein RAB 96.7 0.00099 3.4E-08 47.4 3.0 22 22-43 8-29 (170)
329 3tw8_B RAS-related protein RAB 96.7 0.00081 2.8E-08 48.5 2.5 24 20-43 9-32 (181)
330 2orw_A Thymidine kinase; TMTK, 96.7 0.002 6.9E-08 47.9 4.8 37 19-55 2-40 (184)
331 3a8t_A Adenylate isopentenyltr 96.7 0.0012 4.1E-08 54.1 3.8 32 19-53 39-70 (339)
332 2r6a_A DNAB helicase, replicat 96.7 0.00056 1.9E-08 58.0 1.9 50 8-57 191-243 (454)
333 1e4v_A Adenylate kinase; trans 96.7 0.0011 3.9E-08 50.0 3.4 23 22-44 2-24 (214)
334 2xb4_A Adenylate kinase; ATP-b 96.7 0.0011 3.6E-08 50.7 3.2 23 22-44 2-24 (223)
335 4dsu_A GTPase KRAS, isoform 2B 96.7 0.001 3.5E-08 48.4 3.0 22 22-43 6-27 (189)
336 3bc1_A RAS-related protein RAB 96.6 0.001 3.6E-08 48.4 3.0 23 21-43 12-34 (195)
337 3umf_A Adenylate kinase; rossm 96.6 0.0011 3.8E-08 50.9 3.2 29 16-44 25-53 (217)
338 2ocp_A DGK, deoxyguanosine kin 96.6 0.0014 4.7E-08 50.5 3.7 26 20-45 2-27 (241)
339 3clv_A RAB5 protein, putative; 96.6 0.0013 4.5E-08 48.1 3.4 23 21-43 8-30 (208)
340 2bme_A RAB4A, RAS-related prot 96.6 0.0012 4.1E-08 48.0 3.2 24 20-43 10-33 (186)
341 1z0f_A RAB14, member RAS oncog 96.6 0.0011 3.9E-08 47.6 3.0 24 20-43 15-38 (179)
342 2a9k_A RAS-related protein RAL 96.6 0.0012 4E-08 47.9 3.0 23 21-43 19-41 (187)
343 2qag_A Septin-2, protein NEDD5 96.6 0.00051 1.7E-08 56.6 1.1 21 23-43 40-60 (361)
344 2hxs_A RAB-26, RAS-related pro 96.6 0.0013 4.3E-08 47.5 3.1 23 21-43 7-29 (178)
345 3exa_A TRNA delta(2)-isopenten 96.6 0.0019 6.4E-08 52.5 4.3 26 19-44 2-27 (322)
346 3con_A GTPase NRAS; structural 96.6 0.0012 4.2E-08 48.3 3.0 23 21-43 22-44 (190)
347 1r8s_A ADP-ribosylation factor 96.6 0.0013 4.3E-08 46.8 3.0 22 22-43 2-23 (164)
348 3bos_A Putative DNA replicatio 96.6 0.0015 5E-08 49.5 3.5 25 19-43 51-75 (242)
349 2ce7_A Cell division protein F 96.6 0.001 3.6E-08 56.9 2.8 33 10-44 41-73 (476)
350 2efe_B Small GTP-binding prote 96.6 0.0013 4.3E-08 47.6 3.0 22 22-43 14-35 (181)
351 2g6b_A RAS-related protein RAB 96.6 0.0013 4.4E-08 47.5 3.0 23 21-43 11-33 (180)
352 1vg8_A RAS-related protein RAB 96.6 0.0013 4.3E-08 48.8 3.0 24 20-43 8-31 (207)
353 4edh_A DTMP kinase, thymidylat 96.6 0.0014 4.9E-08 50.0 3.4 27 18-44 4-30 (213)
354 1ak2_A Adenylate kinase isoenz 96.6 0.0016 5.4E-08 49.9 3.6 26 19-44 15-40 (233)
355 3oes_A GTPase rhebl1; small GT 96.5 0.0015 5.2E-08 48.4 3.4 25 19-43 23-47 (201)
356 1ltq_A Polynucleotide kinase; 96.5 0.0013 4.5E-08 52.1 3.2 23 21-43 3-25 (301)
357 3b1v_A Ferrous iron uptake tra 96.5 0.0013 4.5E-08 52.0 3.2 23 21-43 4-26 (272)
358 2bov_A RAla, RAS-related prote 96.5 0.0013 4.5E-08 48.6 3.0 24 20-43 14-37 (206)
359 2xtp_A GTPase IMAP family memb 96.5 0.0016 5.4E-08 50.6 3.6 24 20-43 22-45 (260)
360 2fg5_A RAB-22B, RAS-related pr 96.5 0.0014 4.9E-08 48.2 3.2 23 21-43 24-46 (192)
361 1p5z_B DCK, deoxycytidine kina 96.5 0.00096 3.3E-08 52.1 2.3 29 18-46 22-50 (263)
362 3ihw_A Centg3; RAS, centaurin, 96.5 0.0013 4.6E-08 48.3 3.0 22 22-43 22-43 (184)
363 2gf0_A GTP-binding protein DI- 96.5 0.0015 5E-08 48.1 3.2 23 21-43 9-31 (199)
364 1m7b_A RND3/RHOE small GTP-bin 96.5 0.0015 5.1E-08 47.7 3.2 23 21-43 8-30 (184)
365 4tmk_A Protein (thymidylate ki 96.5 0.0018 6.2E-08 49.5 3.7 26 19-44 2-27 (213)
366 3lxw_A GTPase IMAP family memb 96.5 0.0013 4.6E-08 51.1 2.9 23 21-43 22-44 (247)
367 3lv8_A DTMP kinase, thymidylat 96.5 0.0018 6.2E-08 50.3 3.7 25 19-43 26-50 (236)
368 1fnn_A CDC6P, cell division co 96.5 0.0016 5.4E-08 53.1 3.5 25 22-46 46-70 (389)
369 1ksh_A ARF-like protein 2; sma 96.5 0.0016 5.4E-08 47.5 3.2 26 18-43 16-41 (186)
370 2aka_B Dynamin-1; fusion prote 96.5 0.0019 6.3E-08 51.0 3.8 26 19-44 25-50 (299)
371 1jbk_A CLPB protein; beta barr 96.5 0.0019 6.5E-08 46.7 3.5 25 19-43 42-66 (195)
372 2p5s_A RAS and EF-hand domain 96.5 0.0016 5.4E-08 48.3 3.1 26 18-43 26-51 (199)
373 3tkl_A RAS-related protein RAB 96.5 0.0015 5.2E-08 47.9 3.0 23 21-43 17-39 (196)
374 4bas_A ADP-ribosylation factor 96.5 0.0014 4.8E-08 48.2 2.8 25 19-43 16-40 (199)
375 3kkq_A RAS-related protein M-R 96.5 0.0016 5.4E-08 47.3 3.0 22 22-43 20-41 (183)
376 3t5g_A GTP-binding protein RHE 96.5 0.0017 5.8E-08 47.0 3.2 23 20-42 6-28 (181)
377 3dz8_A RAS-related protein RAB 96.5 0.0017 5.8E-08 47.7 3.2 24 21-44 24-47 (191)
378 2qu8_A Putative nucleolar GTP- 96.5 0.0017 5.8E-08 49.4 3.2 24 20-43 29-52 (228)
379 2iwr_A Centaurin gamma 1; ANK 96.5 0.0014 4.9E-08 47.3 2.7 23 21-43 8-30 (178)
380 1z06_A RAS-related protein RAB 96.5 0.0016 5.5E-08 47.7 3.0 23 21-43 21-43 (189)
381 1zj6_A ADP-ribosylation factor 96.5 0.0021 7.2E-08 47.0 3.6 25 19-43 15-39 (187)
382 2bcg_Y Protein YP2, GTP-bindin 96.5 0.0017 5.9E-08 48.2 3.2 23 21-43 9-31 (206)
383 2qby_A CDC6 homolog 1, cell di 96.4 0.0017 5.9E-08 52.6 3.4 27 18-44 43-69 (386)
384 3ld9_A DTMP kinase, thymidylat 96.4 0.002 6.7E-08 49.7 3.4 27 17-43 18-44 (223)
385 1zbd_A Rabphilin-3A; G protein 96.4 0.0017 5.9E-08 48.0 3.0 23 21-43 9-31 (203)
386 1mh1_A RAC1; GTP-binding, GTPa 96.4 0.0017 5.9E-08 47.0 3.0 22 22-43 7-28 (186)
387 2fh5_B SR-beta, signal recogni 96.4 0.002 7E-08 48.1 3.3 24 20-43 7-30 (214)
388 2gf9_A RAS-related protein RAB 96.4 0.0018 6.1E-08 47.5 2.9 24 20-43 22-45 (189)
389 3t1o_A Gliding protein MGLA; G 96.4 0.002 6.8E-08 47.1 3.2 23 22-44 16-38 (198)
390 2a5j_A RAS-related protein RAB 96.4 0.0018 6.1E-08 47.6 2.9 22 22-43 23-44 (191)
391 2h17_A ADP-ribosylation factor 96.4 0.0021 7.1E-08 46.8 3.2 23 21-43 22-44 (181)
392 1wf3_A GTP-binding protein; GT 96.4 0.002 6.8E-08 51.7 3.3 23 21-43 8-30 (301)
393 1zd9_A ADP-ribosylation factor 96.4 0.0019 6.5E-08 47.4 3.0 24 20-43 22-45 (188)
394 3llm_A ATP-dependent RNA helic 96.4 0.0014 4.8E-08 50.3 2.3 26 17-42 73-98 (235)
395 3crm_A TRNA delta(2)-isopenten 96.4 0.0022 7.7E-08 52.1 3.6 25 21-45 6-30 (323)
396 2atv_A RERG, RAS-like estrogen 96.4 0.0022 7.7E-08 47.3 3.4 23 21-43 29-51 (196)
397 1sxj_D Activator 1 41 kDa subu 96.4 0.0014 4.9E-08 52.7 2.4 36 8-43 44-81 (353)
398 1x3s_A RAS-related protein RAB 96.4 0.002 6.7E-08 47.1 3.0 24 20-43 15-38 (195)
399 3cbq_A GTP-binding protein REM 96.4 0.0013 4.4E-08 48.9 2.0 22 21-42 24-45 (195)
400 2il1_A RAB12; G-protein, GDP, 96.4 0.0016 5.5E-08 48.0 2.5 22 22-43 28-49 (192)
401 1u94_A RECA protein, recombina 96.4 0.0085 2.9E-07 49.3 7.0 38 17-54 60-99 (356)
402 3iev_A GTP-binding protein ERA 96.3 0.0022 7.4E-08 51.5 3.3 23 21-43 11-33 (308)
403 3i8s_A Ferrous iron transport 96.3 0.0025 8.4E-08 50.3 3.6 23 21-43 4-26 (274)
404 3reg_A RHO-like small GTPase; 96.3 0.0021 7.3E-08 47.2 3.0 22 22-43 25-46 (194)
405 3c5c_A RAS-like protein 12; GD 96.3 0.0022 7.5E-08 47.1 3.0 22 22-43 23-44 (187)
406 1gwn_A RHO-related GTP-binding 96.3 0.0024 8.1E-08 47.9 3.2 23 21-43 29-51 (205)
407 3t5d_A Septin-7; GTP-binding p 96.3 0.0019 6.6E-08 50.8 2.8 22 22-43 10-31 (274)
408 2h92_A Cytidylate kinase; ross 96.3 0.0022 7.5E-08 48.4 2.9 25 20-44 3-27 (219)
409 1njg_A DNA polymerase III subu 96.3 0.0026 8.9E-08 47.6 3.4 23 21-43 46-68 (250)
410 2h57_A ADP-ribosylation factor 96.3 0.0018 6.3E-08 47.4 2.4 24 20-43 21-44 (190)
411 3cph_A RAS-related protein SEC 96.3 0.0025 8.7E-08 47.3 3.2 25 19-43 19-43 (213)
412 2cjw_A GTP-binding protein GEM 96.3 0.0024 8.1E-08 47.3 3.0 22 21-42 7-28 (192)
413 4hlc_A DTMP kinase, thymidylat 96.3 0.0033 1.1E-07 47.7 3.8 25 20-44 2-26 (205)
414 2w58_A DNAI, primosome compone 96.3 0.0029 9.8E-08 47.1 3.4 24 21-44 55-78 (202)
415 3b9p_A CG5977-PA, isoform A; A 96.3 0.0028 9.6E-08 50.0 3.5 27 19-45 53-79 (297)
416 2f7s_A C25KG, RAS-related prot 96.2 0.0023 7.8E-08 47.9 2.8 23 21-43 26-48 (217)
417 3a1s_A Iron(II) transport prot 96.2 0.0022 7.5E-08 50.2 2.8 23 21-43 6-28 (258)
418 2q3h_A RAS homolog gene family 96.2 0.0025 8.5E-08 47.1 2.9 24 20-43 20-43 (201)
419 2j1l_A RHO-related GTP-binding 96.2 0.0027 9.3E-08 47.7 3.1 22 22-43 36-57 (214)
420 2z43_A DNA repair and recombin 96.2 0.0062 2.1E-07 49.2 5.4 27 17-43 104-130 (324)
421 1v5w_A DMC1, meiotic recombina 96.2 0.003 1E-07 51.6 3.5 27 17-43 119-145 (343)
422 2dby_A GTP-binding protein; GD 96.2 0.0025 8.4E-08 52.8 3.0 22 22-43 3-24 (368)
423 2atx_A Small GTP binding prote 96.2 0.003 1E-07 46.4 3.2 22 22-43 20-41 (194)
424 2b6h_A ADP-ribosylation factor 96.2 0.003 1E-07 46.7 3.1 24 20-43 29-52 (192)
425 2gco_A H9, RHO-related GTP-bin 96.2 0.003 1E-07 46.9 3.2 28 16-43 20-48 (201)
426 2p65_A Hypothetical protein PF 96.2 0.0026 9E-08 46.0 2.8 25 20-44 43-67 (187)
427 3foz_A TRNA delta(2)-isopenten 96.2 0.0033 1.1E-07 50.9 3.5 25 20-44 10-34 (316)
428 3h4m_A Proteasome-activating n 96.2 0.0046 1.6E-07 48.4 4.3 28 18-45 49-76 (285)
429 1xx6_A Thymidine kinase; NESG, 96.2 0.0051 1.7E-07 46.2 4.3 37 18-54 6-44 (191)
430 2j0v_A RAC-like GTP-binding pr 96.2 0.0037 1.3E-07 46.6 3.6 24 20-43 9-32 (212)
431 1lnz_A SPO0B-associated GTP-bi 96.1 0.0018 6E-08 53.1 1.8 33 11-43 149-181 (342)
432 3llu_A RAS-related GTP-binding 96.1 0.0041 1.4E-07 45.9 3.7 24 20-43 20-43 (196)
433 1ko7_A HPR kinase/phosphatase; 96.1 0.0032 1.1E-07 51.0 3.2 35 8-43 133-167 (314)
434 2fu5_C RAS-related protein RAB 96.1 0.0017 5.7E-08 47.1 1.4 23 21-43 9-31 (183)
435 2hup_A RAS-related protein RAB 96.1 0.0034 1.2E-07 46.7 3.2 23 21-43 30-52 (201)
436 4fcw_A Chaperone protein CLPB; 96.1 0.0036 1.2E-07 49.6 3.4 24 21-44 48-71 (311)
437 3def_A T7I23.11 protein; chlor 96.1 0.0038 1.3E-07 48.8 3.4 23 21-43 37-59 (262)
438 4gzl_A RAS-related C3 botulinu 96.1 0.0036 1.2E-07 46.7 3.2 23 21-43 31-53 (204)
439 3eph_A TRNA isopentenyltransfe 96.1 0.0038 1.3E-07 52.3 3.5 26 20-45 2-27 (409)
440 2qmh_A HPR kinase/phosphorylas 96.0 0.0038 1.3E-07 47.4 3.2 34 9-43 24-57 (205)
441 2x77_A ADP-ribosylation factor 96.0 0.0028 9.5E-08 46.3 2.4 25 18-42 20-44 (189)
442 1h65_A Chloroplast outer envel 96.0 0.0041 1.4E-07 48.7 3.4 24 20-43 39-62 (270)
443 1jal_A YCHF protein; nucleotid 96.0 0.0039 1.3E-07 51.5 3.4 23 21-43 3-25 (363)
444 4dcu_A GTP-binding protein ENG 96.0 0.0031 1.1E-07 53.4 2.8 24 20-43 23-46 (456)
445 1l8q_A Chromosomal replication 96.0 0.0036 1.2E-07 50.2 3.0 25 20-44 37-61 (324)
446 2qz4_A Paraplegin; AAA+, SPG7, 96.0 0.0047 1.6E-07 47.6 3.5 27 18-44 37-63 (262)
447 2b8t_A Thymidine kinase; deoxy 96.0 0.0068 2.3E-07 46.6 4.4 39 18-56 10-50 (223)
448 3q3j_B RHO-related GTP-binding 95.9 0.0043 1.5E-07 46.7 3.0 23 21-43 28-50 (214)
449 3sr0_A Adenylate kinase; phosp 95.9 0.005 1.7E-07 46.7 3.2 23 22-44 2-24 (206)
450 3cpj_B GTP-binding protein YPT 95.9 0.0041 1.4E-07 47.0 2.7 24 20-43 13-36 (223)
451 3cnl_A YLQF, putative uncharac 95.9 0.0054 1.8E-07 48.2 3.4 24 21-44 100-123 (262)
452 2g3y_A GTP-binding protein GEM 95.9 0.0045 1.6E-07 46.9 2.9 23 21-43 38-60 (211)
453 2chg_A Replication factor C sm 95.9 0.0051 1.7E-07 45.5 3.1 23 21-43 39-61 (226)
454 1p6x_A Thymidine kinase; P-loo 95.8 0.0048 1.7E-07 50.4 3.1 29 17-45 4-32 (334)
455 2yc2_C IFT27, small RAB-relate 95.8 0.0017 6E-08 47.9 0.4 23 21-43 21-43 (208)
456 4djt_A GTP-binding nuclear pro 95.8 0.0018 6.2E-08 48.6 0.4 22 22-43 13-34 (218)
457 4a1f_A DNAB helicase, replicat 95.8 0.0058 2E-07 50.0 3.4 50 9-58 35-86 (338)
458 3tqf_A HPR(Ser) kinase; transf 95.8 0.0068 2.3E-07 45.1 3.4 34 9-43 6-39 (181)
459 3e2i_A Thymidine kinase; Zn-bi 95.8 0.0097 3.3E-07 45.7 4.4 36 18-53 26-63 (219)
460 1xp8_A RECA protein, recombina 95.8 0.033 1.1E-06 45.9 7.9 39 17-55 71-111 (366)
461 2zts_A Putative uncharacterize 95.7 0.007 2.4E-07 46.1 3.6 40 17-56 27-69 (251)
462 2i1q_A DNA repair and recombin 95.7 0.0069 2.4E-07 48.6 3.6 27 17-43 95-121 (322)
463 1x6v_B Bifunctional 3'-phospho 95.7 0.0063 2.1E-07 53.8 3.4 26 19-44 51-76 (630)
464 1m8p_A Sulfate adenylyltransfe 95.7 0.0064 2.2E-07 53.1 3.4 26 19-44 395-420 (573)
465 3fdi_A Uncharacterized protein 95.6 0.0081 2.8E-07 45.2 3.5 25 20-44 6-30 (201)
466 2x2e_A Dynamin-1; nitration, h 95.6 0.0048 1.6E-07 50.4 2.3 24 20-43 31-54 (353)
467 2v1u_A Cell division control p 95.6 0.0057 2E-07 49.5 2.7 27 18-44 42-68 (387)
468 3gj0_A GTP-binding nuclear pro 95.6 0.0035 1.2E-07 47.2 1.3 20 22-41 17-36 (221)
469 1puj_A YLQF, conserved hypothe 95.6 0.0088 3E-07 47.5 3.7 24 21-44 121-144 (282)
470 3syl_A Protein CBBX; photosynt 95.5 0.0098 3.4E-07 47.0 3.8 24 20-43 67-90 (309)
471 2hjg_A GTP-binding protein ENG 95.5 0.0062 2.1E-07 51.2 2.7 23 21-43 4-26 (436)
472 1bif_A 6-phosphofructo-2-kinas 95.5 0.0083 2.8E-07 50.9 3.4 24 20-43 39-62 (469)
473 3t15_A Ribulose bisphosphate c 95.5 0.011 3.7E-07 47.1 3.8 26 19-44 35-60 (293)
474 4i1u_A Dephospho-COA kinase; s 95.4 0.0079 2.7E-07 45.9 2.8 23 20-42 9-31 (210)
475 1xwi_A SKD1 protein; VPS4B, AA 95.4 0.017 5.8E-07 46.6 4.9 27 19-45 44-70 (322)
476 2qby_B CDC6 homolog 3, cell di 95.4 0.011 3.9E-07 47.9 3.8 24 20-43 45-68 (384)
477 3th5_A RAS-related C3 botulinu 94.3 0.0028 9.6E-08 47.0 0.0 23 21-43 31-53 (204)
478 4a9a_A Ribosome-interacting GT 95.3 0.0084 2.9E-07 49.7 2.9 32 12-43 62-95 (376)
479 3r7w_A Gtpase1, GTP-binding pr 95.3 0.01 3.6E-07 47.5 3.3 24 20-43 3-26 (307)
480 1e2k_A Thymidine kinase; trans 95.3 0.008 2.7E-07 49.0 2.6 37 19-56 3-39 (331)
481 1c9k_A COBU, adenosylcobinamid 95.3 0.017 5.8E-07 43.0 4.2 22 22-43 1-22 (180)
482 2r62_A Cell division protease 95.3 0.0037 1.3E-07 48.6 0.5 22 22-43 46-67 (268)
483 3bfv_A CAPA1, CAPB2, membrane 95.3 0.23 7.7E-06 38.9 11.0 39 19-57 81-122 (271)
484 2z4s_A Chromosomal replication 95.3 0.0091 3.1E-07 50.4 3.0 24 20-43 130-153 (440)
485 1d2n_A N-ethylmaleimide-sensit 95.3 0.011 3.8E-07 46.1 3.3 26 19-44 63-88 (272)
486 1mky_A Probable GTP-binding pr 95.3 0.01 3.6E-07 49.9 3.3 23 21-43 2-24 (439)
487 1g8f_A Sulfate adenylyltransfe 95.3 0.0082 2.8E-07 51.8 2.6 27 18-44 393-419 (511)
488 3ea0_A ATPase, para family; al 95.3 0.17 6E-06 38.2 10.0 39 19-57 3-45 (245)
489 1wxq_A GTP-binding protein; st 95.2 0.01 3.5E-07 49.5 3.1 22 22-43 2-23 (397)
490 2qen_A Walker-type ATPase; unk 95.2 0.012 4E-07 47.0 3.4 25 20-44 31-55 (350)
491 2fna_A Conserved hypothetical 95.2 0.012 4.2E-07 46.9 3.5 24 21-44 31-54 (357)
492 1ofh_A ATP-dependent HSL prote 95.2 0.012 4.1E-07 46.3 3.2 25 20-44 50-74 (310)
493 1of1_A Thymidine kinase; trans 95.2 0.012 4E-07 48.8 3.2 37 19-56 48-84 (376)
494 1ypw_A Transitional endoplasmi 95.2 0.0052 1.8E-07 55.8 1.2 31 14-44 505-535 (806)
495 1f5n_A Interferon-induced guan 95.1 0.011 3.7E-07 51.9 3.0 26 19-44 37-62 (592)
496 2axn_A 6-phosphofructo-2-kinas 95.1 0.013 4.3E-07 50.7 3.4 25 19-43 34-58 (520)
497 3n70_A Transport activator; si 95.1 0.013 4.5E-07 41.4 3.0 25 20-44 24-48 (145)
498 3cio_A ETK, tyrosine-protein k 95.1 0.36 1.2E-05 38.3 11.8 39 19-57 103-144 (299)
499 3izy_P Translation initiation 95.1 0.011 3.9E-07 51.2 2.9 25 18-42 2-26 (537)
500 3pfi_A Holliday junction ATP-d 95.1 0.021 7.2E-07 45.7 4.4 24 21-44 56-79 (338)
No 1
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.87 E-value=1.5e-22 Score=165.82 Aligned_cols=133 Identities=46% Similarity=0.804 Sum_probs=104.6
Q ss_pred ecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcccccceeEecCCCchhhhhhhhcCcceecccccchHH
Q psy7718 17 LQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLELKNGCLCCSVKDNGVK 96 (184)
Q Consensus 17 v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~gci~~~~~~~~~~ 96 (184)
|++.|+++|+||||||||||+++|++...+.+++|+.|+++...++...+. .. ...+.++.|||+||+.++++..
T Consensus 1 m~~i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~--~~---~~~~~el~~gCicc~~~~~~~~ 75 (318)
T 1nij_A 1 MNPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIG--DR---ATQIKTLTNGCICCSRSNELED 75 (318)
T ss_dssp -CCEEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEEC--TT---SCEEEEETTSCEEECTTSCHHH
T ss_pred CCcccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHh--CC---CCCEEEECCCceEEcccHHHHH
Confidence 357899999999999999999999998888899999999998765443321 11 1346788999999999988888
Q ss_pred HHHHHH--HHcCC--CCEEEEccCCCCCChhHHHHhhhccccCCceEeCcEEEEEcCCCccc
Q psy7718 97 AIENLM--LKRGK--FDYILLETTGLADPGPIAKVFWLDKELGSDIYLDGIVTVVDCKHTID 154 (184)
Q Consensus 97 ~l~~ll--~~~~~--~d~iiiE~tg~~dp~~i~~~l~~~~~~~~~~~l~~vi~vvDa~~~~~ 154 (184)
.+..++ .+... ++++++|++|+++|.++...+...+......+++.++++||+..+..
T Consensus 76 ~l~~l~~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~ 137 (318)
T 1nij_A 76 ALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADE 137 (318)
T ss_dssp HHHHHHHHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHH
T ss_pred HHHHHHhHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHH
Confidence 888875 23343 49999999999999988766533444455678999999999986543
No 2
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.74 E-value=1.4e-18 Score=135.74 Aligned_cols=126 Identities=19% Similarity=0.066 Sum_probs=88.1
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc--c------cc-cceeEecCCCch
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG--S------AM-EKSVSVGDNGNL 74 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~--~------~~-~~~~~~~~~~~l 74 (184)
|.++.+|++|||++.+|++++|+|+||||||||++.|+|..+|.+|.|..++..-. . .. ....+++|+..+
T Consensus 14 y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l 93 (224)
T 2pcj_A 14 IRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYL 93 (224)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCC
T ss_pred ECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCccc
Confidence 34467999999999999999999999999999999999999999999988653211 1 01 234577887776
Q ss_pred hhhhhhhcCcceeccccc----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCC
Q psy7718 75 YEEWLELKNGCLCCSVKD----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADP 121 (184)
Q Consensus 75 ~~~~~~l~~gci~~~~~~----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp 121 (184)
+..++..+|..+.....+ .....+.+++++ ..+|+++++ ||+...||
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~ 173 (224)
T 2pcj_A 94 IPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDS 173 (224)
T ss_dssp CTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCH
T ss_pred CCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCH
Confidence 666666666543321111 111223333321 268999999 99999999
Q ss_pred hhHHHHhh
Q psy7718 122 GPIAKVFW 129 (184)
Q Consensus 122 ~~i~~~l~ 129 (184)
....+++.
T Consensus 174 ~~~~~~~~ 181 (224)
T 2pcj_A 174 ANTKRVMD 181 (224)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87665543
No 3
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.73 E-value=2.5e-18 Score=142.71 Aligned_cols=124 Identities=19% Similarity=0.153 Sum_probs=92.2
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCC----c---ccccceeEecCCCchhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGE----G---SAMEKSVSVGDNGNLYE 76 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~----~---~~~~~~~~~~~~~~l~~ 76 (184)
|++..+|++|||++.+|++++|+||||||||||+|+|+|..+|.+|.|..++..- . ...+....++|+..+++
T Consensus 14 y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p 93 (359)
T 3fvq_A 14 FQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFP 93 (359)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCT
T ss_pred ECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCC
Confidence 4567799999999999999999999999999999999999999999998865321 1 11234557899988888
Q ss_pred hhhhhcCcceeccccc----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChh
Q psy7718 77 EWLELKNGCLCCSVKD----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGP 123 (184)
Q Consensus 77 ~~~~l~~gci~~~~~~----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~ 123 (184)
.++..+|..+....+. .....+.++++. ..+|+++++ ||+...||..
T Consensus 94 ~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~ 173 (359)
T 3fvq_A 94 HLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQL 173 (359)
T ss_dssp TSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHH
T ss_pred CCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 8888888765432211 112233333321 168999999 9999999976
Q ss_pred HHHH
Q psy7718 124 IAKV 127 (184)
Q Consensus 124 i~~~ 127 (184)
..++
T Consensus 174 r~~l 177 (359)
T 3fvq_A 174 RRQI 177 (359)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 4
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.73 E-value=5.5e-18 Score=134.91 Aligned_cols=125 Identities=19% Similarity=0.114 Sum_probs=88.2
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcc------cccceeEecCCCchhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGS------AMEKSVSVGDNGNLYEE 77 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~------~~~~~~~~~~~~~l~~~ 77 (184)
|+++.+|++|||++++|++++|+|+||||||||++.|+|..+|.+|.|..++..-.. ......+++|+..++..
T Consensus 17 y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 96 (257)
T 1g6h_A 17 FGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 96 (257)
T ss_dssp ETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGG
T ss_pred ECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCC
Confidence 445679999999999999999999999999999999999999999999886532111 11234567888777766
Q ss_pred hhhhcCcceeccc--cc---------------chHHHHHHHHHH----------------------------cCCCCEEE
Q psy7718 78 WLELKNGCLCCSV--KD---------------NGVKAIENLMLK----------------------------RGKFDYIL 112 (184)
Q Consensus 78 ~~~l~~gci~~~~--~~---------------~~~~~l~~ll~~----------------------------~~~~d~ii 112 (184)
++..+|..+.... .+ .....+.++++. ..+|++++
T Consensus 97 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lll 176 (257)
T 1g6h_A 97 MTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIV 176 (257)
T ss_dssp SBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred CcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 6666665443211 00 111223333321 17899999
Q ss_pred E-ccCCCCCChhHHHHh
Q psy7718 113 L-ETTGLADPGPIAKVF 128 (184)
Q Consensus 113 i-E~tg~~dp~~i~~~l 128 (184)
+ |||...||....+++
T Consensus 177 LDEPts~LD~~~~~~l~ 193 (257)
T 1g6h_A 177 MDEPIAGVAPGLAHDIF 193 (257)
T ss_dssp EESTTTTCCHHHHHHHH
T ss_pred EeCCccCCCHHHHHHHH
Confidence 9 999999998765544
No 5
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.71 E-value=4e-18 Score=142.44 Aligned_cols=124 Identities=15% Similarity=0.070 Sum_probs=91.1
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCC--cc-cccceeEecCCCchhhhhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGE--GS-AMEKSVSVGDNGNLYEEWLE 80 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~--~~-~~~~~~~~~~~~~l~~~~~~ 80 (184)
|++..+|++|||++.+|++++|+||||||||||+|+|+|..++.+|.|..++..- .. ..+....++|+..+++.++.
T Consensus 13 yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV 92 (381)
T 3rlf_A 13 WGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSV 92 (381)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCH
T ss_pred ECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCH
Confidence 4567799999999999999999999999999999999999999999998865321 11 12345578999888888888
Q ss_pred hcCcceeccccc----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHHHH
Q psy7718 81 LKNGCLCCSVKD----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIAKV 127 (184)
Q Consensus 81 l~~gci~~~~~~----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~~~ 127 (184)
.+|..+....++ .....+.++++. ..+|+++++ ||+...||....++
T Consensus 93 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l 172 (381)
T 3rlf_A 93 AENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM 172 (381)
T ss_dssp HHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHH
Confidence 888765432211 111223333321 158999999 99999999755443
No 6
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.71 E-value=6.1e-18 Score=133.01 Aligned_cols=123 Identities=20% Similarity=0.081 Sum_probs=85.6
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCccc--------c-cceeEecCCCchhhh
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSA--------M-EKSVSVGDNGNLYEE 77 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~~--------~-~~~~~~~~~~~l~~~ 77 (184)
..+|++|||++.+|++++|+|+||||||||++.|+|..+|.+|.|..++..-... . ....+++|++.+++.
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ 97 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPL 97 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTT
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCC
Confidence 3589999999999999999999999999999999999999999998865321110 1 124578888777766
Q ss_pred hhhhcCcceecccc-------cchHHHHHHHHHH-----------------------------cCCCCEEEE-ccCCCCC
Q psy7718 78 WLELKNGCLCCSVK-------DNGVKAIENLMLK-----------------------------RGKFDYILL-ETTGLAD 120 (184)
Q Consensus 78 ~~~l~~gci~~~~~-------~~~~~~l~~ll~~-----------------------------~~~~d~iii-E~tg~~d 120 (184)
++..+|..+..... ......+.+++.. ..+|+++++ |||...|
T Consensus 98 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD 177 (235)
T 3tif_A 98 LTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALD 177 (235)
T ss_dssp SCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSC
T ss_pred CcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 66666654321110 0011111221111 268999999 9999999
Q ss_pred ChhHHHHhh
Q psy7718 121 PGPIAKVFW 129 (184)
Q Consensus 121 p~~i~~~l~ 129 (184)
|....+++.
T Consensus 178 ~~~~~~i~~ 186 (235)
T 3tif_A 178 SKTGEKIMQ 186 (235)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 987666543
No 7
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.71 E-value=1.1e-17 Score=129.80 Aligned_cols=124 Identities=19% Similarity=0.058 Sum_probs=83.4
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcccccceeEecCCCchhhhhhhhcC
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLELKN 83 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 83 (184)
|++ .+|+++||++.+|++++|+|+||||||||++.|+|..+|.+|.|..++..-........+++|++.++..++..+|
T Consensus 20 y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~en 98 (214)
T 1sgw_A 20 YDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDY 98 (214)
T ss_dssp SSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHH
T ss_pred eCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHH
Confidence 344 7999999999999999999999999999999999999999999988653211122234467776655554444444
Q ss_pred cceeccc---ccchHHHHHHHHH---------------------------HcCCCCEEEE-ccCCCCCChhHHHHhh
Q psy7718 84 GCLCCSV---KDNGVKAIENLML---------------------------KRGKFDYILL-ETTGLADPGPIAKVFW 129 (184)
Q Consensus 84 gci~~~~---~~~~~~~l~~ll~---------------------------~~~~~d~iii-E~tg~~dp~~i~~~l~ 129 (184)
..+.... ... ...+.++++ -..+|+++++ ||+...||.....++.
T Consensus 99 l~~~~~~~~~~~~-~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~ 174 (214)
T 1sgw_A 99 LKAVASLYGVKVN-KNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLK 174 (214)
T ss_dssp HHHHHHHTTCCCC-HHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHH
T ss_pred HHHHHHhcCCchH-HHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHH
Confidence 4332111 001 111111111 0268999999 9999999987665543
No 8
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.71 E-value=9.2e-18 Score=139.21 Aligned_cols=123 Identities=16% Similarity=0.070 Sum_probs=89.5
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCC--c-ccccceeEecCCCchhhhhhhh
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGE--G-SAMEKSVSVGDNGNLYEEWLEL 81 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~--~-~~~~~~~~~~~~~~l~~~~~~l 81 (184)
++..+|++|||++.+|++++|+||||||||||+|.|+|..++.+|.|..++..- . ...+....++|+..+++.++..
T Consensus 26 g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~ 105 (355)
T 1z47_A 26 GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVY 105 (355)
T ss_dssp TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHH
T ss_pred CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHH
Confidence 556799999999999999999999999999999999999999999998865321 1 1123455788888888877777
Q ss_pred cCcceeccccc----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHHHH
Q psy7718 82 KNGCLCCSVKD----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIAKV 127 (184)
Q Consensus 82 ~~gci~~~~~~----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~~~ 127 (184)
+|..+....++ .....+.++++. ..+|+++++ ||+...||....++
T Consensus 106 eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l 184 (355)
T 1z47_A 106 DNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRREL 184 (355)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 77654322111 111223333321 268999999 99999999765443
No 9
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.71 E-value=5.4e-18 Score=134.95 Aligned_cols=125 Identities=16% Similarity=0.017 Sum_probs=87.2
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc----ccccceeEecCCCchhhhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG----SAMEKSVSVGDNGNLYEEWL 79 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~l~~~~~ 79 (184)
|.++.+|++|||++.+|++++|+|+||||||||++.|+|..+|.+|.|..++..-. .......+++|...++..++
T Consensus 25 y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~lt 104 (256)
T 1vpl_A 25 IGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQ 104 (256)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSB
T ss_pred ECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCc
Confidence 34567999999999999999999999999999999999999999999988653211 11223456788776666666
Q ss_pred hhcCcceeccccc----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHHH
Q psy7718 80 ELKNGCLCCSVKD----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIAK 126 (184)
Q Consensus 80 ~l~~gci~~~~~~----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~~ 126 (184)
..+|..+.....+ .....+.++++. ..+|+++++ |||...||....+
T Consensus 105 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~ 184 (256)
T 1vpl_A 105 GIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNARE 184 (256)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHH
Confidence 6666544321111 011122222221 268999999 9999999987655
Q ss_pred Hh
Q psy7718 127 VF 128 (184)
Q Consensus 127 ~l 128 (184)
++
T Consensus 185 l~ 186 (256)
T 1vpl_A 185 VR 186 (256)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 10
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.71 E-value=4.3e-18 Score=136.05 Aligned_cols=125 Identities=21% Similarity=0.203 Sum_probs=87.2
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCC----cc---cccceeEecCCCchhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGE----GS---AMEKSVSVGDNGNLYE 76 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~----~~---~~~~~~~~~~~~~l~~ 76 (184)
|+++.+|++|||++.+|++++|+|+||||||||++.|+|..+|.+|.|..++..- .. ......+++|+..++.
T Consensus 34 y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~ 113 (263)
T 2olj_A 34 FGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFP 113 (263)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCT
T ss_pred ECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCC
Confidence 3456799999999999999999999999999999999999999999998865321 01 1123456788777666
Q ss_pred hhhhhcCcceec-cccc----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCCh
Q psy7718 77 EWLELKNGCLCC-SVKD----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPG 122 (184)
Q Consensus 77 ~~~~l~~gci~~-~~~~----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~ 122 (184)
.++..+|..+.. ...+ .....+.+++++ ..+|+++++ |||...||.
T Consensus 114 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~ 193 (263)
T 2olj_A 114 HMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPE 193 (263)
T ss_dssp TSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHH
T ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHH
Confidence 666666654421 1111 111222233221 268999999 999999998
Q ss_pred hHHHHh
Q psy7718 123 PIAKVF 128 (184)
Q Consensus 123 ~i~~~l 128 (184)
...+++
T Consensus 194 ~~~~~~ 199 (263)
T 2olj_A 194 MVGEVL 199 (263)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765544
No 11
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.71 E-value=1.4e-17 Score=138.28 Aligned_cols=124 Identities=16% Similarity=0.061 Sum_probs=91.1
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCC--c-ccccceeEecCCCchhhhhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGE--G-SAMEKSVSVGDNGNLYEEWLE 80 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~--~-~~~~~~~~~~~~~~l~~~~~~ 80 (184)
|+++.+|+++||++++|++++|+||||||||||+|.|+|..+|.+|.|..++..- . ...+....++|+..+++.++.
T Consensus 13 y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (359)
T 2yyz_A 13 FGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTV 92 (359)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCH
T ss_pred ECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 4456799999999999999999999999999999999999999999998865321 1 112345578898888888888
Q ss_pred hcCcceecccccch----HHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHHHH
Q psy7718 81 LKNGCLCCSVKDNG----VKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIAKV 127 (184)
Q Consensus 81 l~~gci~~~~~~~~----~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~~~ 127 (184)
.+|..+....++.. ...+.++++. ..+|+++++ ||+...||....++
T Consensus 93 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l 172 (359)
T 2yyz_A 93 FENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIM 172 (359)
T ss_dssp HHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH
Confidence 88876544322111 1123333321 268999999 99999999765443
No 12
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.71 E-value=8.6e-18 Score=139.43 Aligned_cols=124 Identities=18% Similarity=0.046 Sum_probs=90.0
Q ss_pred CCCC--CCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCC--------cccccceeEecCCCch
Q psy7718 5 SDSE--VPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGE--------GSAMEKSVSVGDNGNL 74 (184)
Q Consensus 5 ~~~~--~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~--------~~~~~~~~~~~~~~~l 74 (184)
++.. +|++|||++.+|++++|+||||||||||+|.|+|..+|.+|.|..++..- ....+....++|+..+
T Consensus 14 ~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l 93 (353)
T 1oxx_K 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWAL 93 (353)
T ss_dssp GGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCC
T ss_pred CCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCcc
Confidence 3456 89999999999999999999999999999999999999999998865221 1112334578898888
Q ss_pred hhhhhhhcCcceeccccc----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCC
Q psy7718 75 YEEWLELKNGCLCCSVKD----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADP 121 (184)
Q Consensus 75 ~~~~~~l~~gci~~~~~~----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp 121 (184)
++.++..+|..+....++ .....+.++++. ..+|+++++ ||+...||
T Consensus 94 ~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~ 173 (353)
T 1oxx_K 94 YPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDA 173 (353)
T ss_dssp CTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCG
T ss_pred CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence 888888888765432211 111223333321 268999999 99999999
Q ss_pred hhHHHHh
Q psy7718 122 GPIAKVF 128 (184)
Q Consensus 122 ~~i~~~l 128 (184)
....++.
T Consensus 174 ~~r~~l~ 180 (353)
T 1oxx_K 174 RMRDSAR 180 (353)
T ss_dssp GGHHHHH
T ss_pred HHHHHHH
Confidence 8655443
No 13
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.71 E-value=1.3e-17 Score=138.61 Aligned_cols=122 Identities=16% Similarity=0.150 Sum_probs=89.5
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcc--------cccceeEecCCCchhhhh
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGS--------AMEKSVSVGDNGNLYEEW 78 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~--------~~~~~~~~~~~~~l~~~~ 78 (184)
..+|++|||++.+|++++|+|+||||||||+|.|++..+|.+|.|..++..-.. ..+....++|++.++..+
T Consensus 41 ~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~ 120 (366)
T 3tui_C 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSR 120 (366)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTS
T ss_pred eEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCC
Confidence 458999999999999999999999999999999999999999999886532111 123455789988888777
Q ss_pred hhhcCcceeccccc----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHH
Q psy7718 79 LELKNGCLCCSVKD----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIA 125 (184)
Q Consensus 79 ~~l~~gci~~~~~~----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~ 125 (184)
+..+|..+.....+ .....+.++++. ..+|+++++ |||...||....
T Consensus 121 TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~ 200 (366)
T 3tui_C 121 TVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTR 200 (366)
T ss_dssp CHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHH
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHH
Confidence 77777655432211 112223333331 168999999 999999998655
Q ss_pred HHh
Q psy7718 126 KVF 128 (184)
Q Consensus 126 ~~l 128 (184)
+++
T Consensus 201 ~i~ 203 (366)
T 3tui_C 201 SIL 203 (366)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 14
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.70 E-value=2.9e-17 Score=129.50 Aligned_cols=125 Identities=17% Similarity=0.139 Sum_probs=87.5
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc--c---c-ccceeEecCCCchhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG--S---A-MEKSVSVGDNGNLYEE 77 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~--~---~-~~~~~~~~~~~~l~~~ 77 (184)
|+++.+|++|||++.+|++++|+|+||||||||++.|+|..+|.+|.|..++..-. . . .....+++|+..++..
T Consensus 16 y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 95 (240)
T 1ji0_A 16 YGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPE 95 (240)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTT
T ss_pred ECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCC
Confidence 34467999999999999999999999999999999999999999999988653211 1 1 1124578888777776
Q ss_pred hhhhcCcceecc--c-ccchHHHHHHH------HHH-----------------------cCCCCEEEE-ccCCCCCChhH
Q psy7718 78 WLELKNGCLCCS--V-KDNGVKAIENL------MLK-----------------------RGKFDYILL-ETTGLADPGPI 124 (184)
Q Consensus 78 ~~~l~~gci~~~--~-~~~~~~~l~~l------l~~-----------------------~~~~d~iii-E~tg~~dp~~i 124 (184)
++..+|..+.+. . .......+.++ +.. ..+|+++++ |||...||...
T Consensus 96 ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~ 175 (240)
T 1ji0_A 96 LTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILV 175 (240)
T ss_dssp SBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHH
T ss_pred CcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHH
Confidence 667776654321 1 11111122222 110 268999999 99999999876
Q ss_pred HHHh
Q psy7718 125 AKVF 128 (184)
Q Consensus 125 ~~~l 128 (184)
..++
T Consensus 176 ~~l~ 179 (240)
T 1ji0_A 176 SEVF 179 (240)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 15
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.70 E-value=2.2e-17 Score=131.22 Aligned_cols=115 Identities=17% Similarity=0.094 Sum_probs=76.4
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcccccceeEecCCCchhhhhhhhcCcc
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLELKNGC 85 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~gc 85 (184)
++.+|+++||++++|++++|+|+||||||||++.|+|..+|.+|.|.. .....+++|...++..++..+|..
T Consensus 17 ~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~--------~~~i~~v~q~~~~~~~~tv~enl~ 88 (253)
T 2nq2_C 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV--------YQSIGFVPQFFSSPFAYSVLDIVL 88 (253)
T ss_dssp TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE--------CSCEEEECSCCCCSSCCBHHHHHH
T ss_pred CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE--------eccEEEEcCCCccCCCCCHHHHHH
Confidence 567999999999999999999999999999999999999888888762 112234555544433334444433
Q ss_pred eeccc--------ccchHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHHHHh
Q psy7718 86 LCCSV--------KDNGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIAKVF 128 (184)
Q Consensus 86 i~~~~--------~~~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~~~l 128 (184)
+.... .......+.++++. ..+|+++++ ||+...||....+++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~ 168 (253)
T 2nq2_C 89 MGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVL 168 (253)
T ss_dssp GGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHH
T ss_pred HhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 22110 00001112222211 268999999 999999998765543
No 16
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.70 E-value=7.1e-18 Score=134.96 Aligned_cols=123 Identities=13% Similarity=0.044 Sum_probs=81.9
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc-----ccccceeEecCCCchhhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG-----SAMEKSVSVGDNGNLYEEW 78 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~l~~~~ 78 (184)
|+++.+|++|||++.+|++++|+|+||||||||++.|+|..++.+|.|..++..-. .......+++|...++..+
T Consensus 21 ~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (266)
T 4g1u_C 21 VQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPF 100 (266)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCC
T ss_pred eCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCC
Confidence 45677999999999999999999999999999999999999888888887653211 1112234566655443334
Q ss_pred hhhcCcceecccc--cch------------------------------HHHHHHHHHHcC------CCCEEEE-ccCCCC
Q psy7718 79 LELKNGCLCCSVK--DNG------------------------------VKAIENLMLKRG------KFDYILL-ETTGLA 119 (184)
Q Consensus 79 ~~l~~gci~~~~~--~~~------------------------------~~~l~~ll~~~~------~~d~iii-E~tg~~ 119 (184)
+..+|..+..... ... .-.|++.+. . +|+++++ |||...
T Consensus 101 tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~--~~~~~~~~p~lLllDEPts~L 178 (266)
T 4g1u_C 101 SVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLA--QLWQPQPTPRWLFLDEPTSAL 178 (266)
T ss_dssp BHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHH--HTCCSSCCCEEEEECCCCSSC
T ss_pred CHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHh--cccccCCCCCEEEEeCccccC
Confidence 4444433221110 011 112333322 4 8999999 999999
Q ss_pred CChhHHHHh
Q psy7718 120 DPGPIAKVF 128 (184)
Q Consensus 120 dp~~i~~~l 128 (184)
||....+++
T Consensus 179 D~~~~~~i~ 187 (266)
T 4g1u_C 179 DLYHQQHTL 187 (266)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 998655544
No 17
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.70 E-value=1e-17 Score=133.79 Aligned_cols=125 Identities=23% Similarity=0.186 Sum_probs=85.3
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc------------------ccccce
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG------------------SAMEKS 65 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~------------------~~~~~~ 65 (184)
|+++.+|++|||++.+|++++|+|+||||||||++.|+|..+|.+|.|..++..-. ......
T Consensus 16 y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 95 (262)
T 1b0u_A 16 YGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 95 (262)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHE
T ss_pred ECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcce
Confidence 34567999999999999999999999999999999999999999999988653211 011234
Q ss_pred eEecCCCchhhhhhhhcCcceec-ccc----cchHHHHHHHHH----------H-------------------cCCCCEE
Q psy7718 66 VSVGDNGNLYEEWLELKNGCLCC-SVK----DNGVKAIENLML----------K-------------------RGKFDYI 111 (184)
Q Consensus 66 ~~~~~~~~l~~~~~~l~~gci~~-~~~----~~~~~~l~~ll~----------~-------------------~~~~d~i 111 (184)
.+++|+..++..++..+|..+.. ... ......+.++++ + ..+|+++
T Consensus 96 ~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ll 175 (262)
T 1b0u_A 96 TMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVL 175 (262)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEE
T ss_pred EEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 57788776666666666654421 110 000111111111 0 2689999
Q ss_pred EE-ccCCCCCChhHHHHh
Q psy7718 112 LL-ETTGLADPGPIAKVF 128 (184)
Q Consensus 112 ii-E~tg~~dp~~i~~~l 128 (184)
++ |||...||.....++
T Consensus 176 lLDEPts~LD~~~~~~~~ 193 (262)
T 1b0u_A 176 LFDEPTSALDPELVGEVL 193 (262)
T ss_dssp EEESTTTTSCHHHHHHHH
T ss_pred EEeCCCccCCHHHHHHHH
Confidence 99 999999998655543
No 18
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.69 E-value=1.3e-17 Score=139.22 Aligned_cols=124 Identities=15% Similarity=0.068 Sum_probs=89.6
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCC---------cccccceeEecCCCch
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGE---------GSAMEKSVSVGDNGNL 74 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~l 74 (184)
|++..+|++|||++.+|++++|+|+||||||||+|.|+|..++.+|.|..++..- ....+....++|+..+
T Consensus 13 y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l 92 (372)
T 1g29_1 13 FGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL 92 (372)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC
T ss_pred ECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCcc
Confidence 4456799999999999999999999999999999999999999999998865321 1112335578898888
Q ss_pred hhhhhhhcCcceeccccc----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCC
Q psy7718 75 YEEWLELKNGCLCCSVKD----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADP 121 (184)
Q Consensus 75 ~~~~~~l~~gci~~~~~~----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp 121 (184)
++.++..+|..+....++ .....+.++++. ..+|+++++ ||+...||
T Consensus 93 ~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~ 172 (372)
T 1g29_1 93 YPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDA 172 (372)
T ss_dssp CTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCH
T ss_pred CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCH
Confidence 888888887655432211 111223333221 168999999 99999999
Q ss_pred hhHHHH
Q psy7718 122 GPIAKV 127 (184)
Q Consensus 122 ~~i~~~ 127 (184)
....++
T Consensus 173 ~~r~~l 178 (372)
T 1g29_1 173 KLRVRM 178 (372)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765443
No 19
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.69 E-value=2.3e-17 Score=137.69 Aligned_cols=124 Identities=13% Similarity=0.022 Sum_probs=85.3
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCC--c-ccccceeEecCCCchhhhhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGE--G-SAMEKSVSVGDNGNLYEEWLE 80 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~--~-~~~~~~~~~~~~~~l~~~~~~ 80 (184)
|++..+|+++||++.+|++++|+||||||||||+|.|+|..++.+|.|..++..- . ...+....++|+..+++.++.
T Consensus 21 y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 100 (372)
T 1v43_A 21 FGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTV 100 (372)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCH
T ss_pred ECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 4456799999999999999999999999999999999999999999998865321 1 112345578898888888888
Q ss_pred hcCcceeccccc----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHHHH
Q psy7718 81 LKNGCLCCSVKD----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIAKV 127 (184)
Q Consensus 81 l~~gci~~~~~~----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~~~ 127 (184)
.+|..+....++ .....+.++++. ..+|+++++ ||+...||....++
T Consensus 101 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l 180 (372)
T 1v43_A 101 YENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAM 180 (372)
T ss_dssp HHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHH
Confidence 888765433211 111223333331 168999999 99999999765443
No 20
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.68 E-value=1.9e-17 Score=137.66 Aligned_cols=124 Identities=17% Similarity=0.060 Sum_probs=90.5
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCC--c-ccccceeEecCCCchhhhhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGE--G-SAMEKSVSVGDNGNLYEEWLE 80 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~--~-~~~~~~~~~~~~~~l~~~~~~ 80 (184)
|++..+|+++||++.+|++++|+||||||||||+|.|+|..++.+|.|..++..- . ...+....++|+..+++.++.
T Consensus 13 y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (362)
T 2it1_A 13 FGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTV 92 (362)
T ss_dssp SSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCH
T ss_pred ECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCH
Confidence 4556799999999999999999999999999999999999999999998865321 1 112345578898888888888
Q ss_pred hcCcceeccccc----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHHHH
Q psy7718 81 LKNGCLCCSVKD----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIAKV 127 (184)
Q Consensus 81 l~~gci~~~~~~----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~~~ 127 (184)
.+|..+....++ .....+.++++. ..+|+++++ ||+...||....++
T Consensus 93 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l 172 (362)
T 2it1_A 93 YKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEV 172 (362)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHH
Confidence 887655322111 111223333321 268999999 99999999765443
No 21
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.68 E-value=4.3e-17 Score=130.99 Aligned_cols=122 Identities=15% Similarity=0.085 Sum_probs=81.1
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCC--c-----ccccceeEecCCCc-hhhhh
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGE--G-----SAMEKSVSVGDNGN-LYEEW 78 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~--~-----~~~~~~~~~~~~~~-l~~~~ 78 (184)
..+|++|||++.+|++++|+|+||||||||++.|+|..+|.+|.|..++..- . .......+++|++. .+...
T Consensus 21 ~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~ 100 (275)
T 3gfo_A 21 THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSA 100 (275)
T ss_dssp CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSS
T ss_pred CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccC
Confidence 4599999999999999999999999999999999999999999998865321 1 11223456777642 11133
Q ss_pred hhhcCcceeccccc----chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHH
Q psy7718 79 LELKNGCLCCSVKD----NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIA 125 (184)
Q Consensus 79 ~~l~~gci~~~~~~----~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~ 125 (184)
+..+|..+.+...+ .....+.++++. ..+|+++++ |||...||....
T Consensus 101 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~ 180 (275)
T 3gfo_A 101 SVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVS 180 (275)
T ss_dssp BHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHH
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHH
Confidence 44444333221110 111122222221 268999999 999999998655
Q ss_pred HHh
Q psy7718 126 KVF 128 (184)
Q Consensus 126 ~~l 128 (184)
+++
T Consensus 181 ~i~ 183 (275)
T 3gfo_A 181 EIM 183 (275)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 22
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.68 E-value=2.5e-17 Score=136.31 Aligned_cols=122 Identities=19% Similarity=0.117 Sum_probs=88.4
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc---ccccceeEecCCCchhhhhhh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG---SAMEKSVSVGDNGNLYEEWLE 80 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~---~~~~~~~~~~~~~~l~~~~~~ 80 (184)
|++. +|+++||++.+|++++|+||||||||||+|.|+|..+|.+|.|..++..-. ...+....++|+..+++.++.
T Consensus 11 y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 89 (348)
T 3d31_A 11 WKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNV 89 (348)
T ss_dssp CSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCH
T ss_pred ECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCH
Confidence 4455 999999999999999999999999999999999999999999988653211 112334578898888887777
Q ss_pred hcCcceecccc--cchHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHHHH
Q psy7718 81 LKNGCLCCSVK--DNGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIAKV 127 (184)
Q Consensus 81 l~~gci~~~~~--~~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~~~ 127 (184)
.+|..+....+ ... ..+.++++. ..+|+++++ ||+...||....++
T Consensus 90 ~enl~~~~~~~~~~~~-~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l 166 (348)
T 3d31_A 90 KKNLEFGMRMKKIKDP-KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENA 166 (348)
T ss_dssp HHHHHHHHHHHCCCCH-HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHH-HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHH
Confidence 77765432211 011 222232221 268999999 99999999765543
No 23
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.66 E-value=4.6e-17 Score=131.08 Aligned_cols=53 Identities=25% Similarity=0.188 Sum_probs=48.2
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEeccc
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEF 56 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~ 56 (184)
|+++.+|++|||++.+|++++|+|+||||||||++.|+|..+|.+|.|..++.
T Consensus 31 y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~ 83 (279)
T 2ihy_A 31 KQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGK 83 (279)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTB
T ss_pred ECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCE
Confidence 34567999999999999999999999999999999999999999999988653
No 24
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.65 E-value=1.2e-16 Score=126.03 Aligned_cols=119 Identities=17% Similarity=0.087 Sum_probs=81.8
Q ss_pred CCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc---ccccceeEecCCCchhhhhhhhcCcc
Q psy7718 9 VPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG---SAMEKSVSVGDNGNLYEEWLELKNGC 85 (184)
Q Consensus 9 ~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~---~~~~~~~~~~~~~~l~~~~~~l~~gc 85 (184)
+|++|||++++ ++++|+|+||||||||++.|+|..+|.+|.|..++..-. .......+++|...+++.++..+|..
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~ 92 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIA 92 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHH
Confidence 59999999999 999999999999999999999999999999988653211 11122345777766666666666654
Q ss_pred eeccccc--chHHHHHHHHHH----------------------------cCCCCEEEE-ccCCCCCChhHHHHh
Q psy7718 86 LCCSVKD--NGVKAIENLMLK----------------------------RGKFDYILL-ETTGLADPGPIAKVF 128 (184)
Q Consensus 86 i~~~~~~--~~~~~l~~ll~~----------------------------~~~~d~iii-E~tg~~dp~~i~~~l 128 (184)
+.+...+ .....+.+++++ ..+|+++++ |||...||....+++
T Consensus 93 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~ 166 (240)
T 2onk_A 93 YGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLM 166 (240)
T ss_dssp TTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHH
T ss_pred HHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 3322111 001222232221 268999999 999999998655543
No 25
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.64 E-value=3.7e-16 Score=125.30 Aligned_cols=119 Identities=19% Similarity=0.144 Sum_probs=81.2
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcc-----cccceeEecCCCchhhhhhhh
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGS-----AMEKSVSVGDNGNLYEEWLEL 81 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~l 81 (184)
+.+|++|||++.+|++++|+|+||||||||++.|+|..+|.+|.|..++..-.. ......+++|.+.++. .+..
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~ 110 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-RSFR 110 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHH
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCcccc-ccHH
Confidence 679999999999999999999999999999999999999999999886532111 1122446777665543 2444
Q ss_pred cCcceecccccc----------------------------------------hHHHHHHHHHHcCCCCEEEE-ccCCCCC
Q psy7718 82 KNGCLCCSVKDN----------------------------------------GVKAIENLMLKRGKFDYILL-ETTGLAD 120 (184)
Q Consensus 82 ~~gci~~~~~~~----------------------------------------~~~~l~~ll~~~~~~d~iii-E~tg~~d 120 (184)
+|..+....... ..-.|++.+ ..+|+++++ |||...|
T Consensus 111 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL--~~~p~lllLDEPts~LD 188 (271)
T 2ixe_A 111 ENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARAL--IRKPRLLILDNATSALD 188 (271)
T ss_dssp HHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHH--TTCCSEEEEESTTTTCC
T ss_pred HHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHH--hcCCCEEEEECCccCCC
Confidence 444332111000 011222222 268999999 9999999
Q ss_pred ChhHHHHh
Q psy7718 121 PGPIAKVF 128 (184)
Q Consensus 121 p~~i~~~l 128 (184)
|.....++
T Consensus 189 ~~~~~~i~ 196 (271)
T 2ixe_A 189 AGNQLRVQ 196 (271)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98765544
No 26
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.63 E-value=7.6e-16 Score=121.86 Aligned_cols=120 Identities=17% Similarity=0.097 Sum_probs=82.5
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcc-----cccceeEecCCCchhhhhhh
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGS-----AMEKSVSVGDNGNLYEEWLE 80 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~ 80 (184)
++.+|++|||++++|++++|+|+||||||||++.|+|..+|.+|.|..++..-.. ......+++|.+.++. .+.
T Consensus 21 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv 99 (247)
T 2ff7_A 21 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSI 99 (247)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-SBH
T ss_pred CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-ccH
Confidence 4679999999999999999999999999999999999999999999886532111 1123446778766554 355
Q ss_pred hcCcceeccccc--ch-------------------------------------HHHHHHHHHHcCCCCEEEE-ccCCCCC
Q psy7718 81 LKNGCLCCSVKD--NG-------------------------------------VKAIENLMLKRGKFDYILL-ETTGLAD 120 (184)
Q Consensus 81 l~~gci~~~~~~--~~-------------------------------------~~~l~~ll~~~~~~d~iii-E~tg~~d 120 (184)
.+|..+...... .. .-.|++.+ ..+|+++++ |||...|
T Consensus 100 ~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL--~~~p~lllLDEPts~LD 177 (247)
T 2ff7_A 100 IDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARAL--VNNPKILIFDEATSALD 177 (247)
T ss_dssp HHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHH--TTCCSEEEECCCCSCCC
T ss_pred HHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHH--hcCCCEEEEeCCcccCC
Confidence 555443211000 00 01112221 267999999 9999999
Q ss_pred ChhHHHHh
Q psy7718 121 PGPIAKVF 128 (184)
Q Consensus 121 p~~i~~~l 128 (184)
|.....++
T Consensus 178 ~~~~~~i~ 185 (247)
T 2ff7_A 178 YESEHVIM 185 (247)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98665544
No 27
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.63 E-value=2.4e-16 Score=124.96 Aligned_cols=118 Identities=14% Similarity=0.022 Sum_probs=79.0
Q ss_pred CCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc-----ccccceeEecCCCchhhhhhhhc
Q psy7718 8 EVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG-----SAMEKSVSVGDNGNLYEEWLELK 82 (184)
Q Consensus 8 ~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~l~ 82 (184)
.+|+++||++.+|++++|+|+||||||||++.|+|..++. |.|..++..-. .......+++|+..++..++..+
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 92 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWH 92 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHH
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHH
Confidence 5899999999999999999999999999999999998888 88887653211 11123446777766555555555
Q ss_pred Ccceecccccc-----------------------------hHHHHHHHHHHcCCCC-------EEEE-ccCCCCCChhHH
Q psy7718 83 NGCLCCSVKDN-----------------------------GVKAIENLMLKRGKFD-------YILL-ETTGLADPGPIA 125 (184)
Q Consensus 83 ~gci~~~~~~~-----------------------------~~~~l~~ll~~~~~~d-------~iii-E~tg~~dp~~i~ 125 (184)
|..+....... ..-.|++.+. .+|+ ++++ |||...||....
T Consensus 93 ~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~--~~p~~~~~~~~lllLDEPts~LD~~~~~ 170 (249)
T 2qi9_C 93 YLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVL--QITPQANPAGQLLLLDEPMNSLDVAQQS 170 (249)
T ss_dssp HHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHH--HHCTTTCTTCCEEEESSTTTTCCHHHHH
T ss_pred HHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHH--cCCCcCCCCCeEEEEECCcccCCHHHHH
Confidence 54332110000 0112222221 4677 9999 999999998655
Q ss_pred HHh
Q psy7718 126 KVF 128 (184)
Q Consensus 126 ~~l 128 (184)
.++
T Consensus 171 ~l~ 173 (249)
T 2qi9_C 171 ALD 173 (249)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 28
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.63 E-value=1.6e-15 Score=118.64 Aligned_cols=50 Identities=22% Similarity=0.256 Sum_probs=46.4
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
++++|+++||++++|++++|+|+||||||||++.|+|..+|.+|.|..++
T Consensus 20 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 69 (229)
T 2pze_A 20 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 69 (229)
T ss_dssp SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC
Confidence 46799999999999999999999999999999999999999999887754
No 29
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.62 E-value=6.2e-16 Score=122.01 Aligned_cols=81 Identities=12% Similarity=0.100 Sum_probs=59.4
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCC-----cccccceeEecCCCchhhhhh
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGE-----GSAMEKSVSVGDNGNLYEEWL 79 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~l~~~~~ 79 (184)
+++.+|++|||++++|++++|+|+||||||||++.|+|..+|.+|.|..++..- ........+++|++.++.. +
T Consensus 13 ~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~-t 91 (243)
T 1mv5_A 13 DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG-T 91 (243)
T ss_dssp SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCE-E
T ss_pred CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccc-c
Confidence 456799999999999999999999999999999999999888888887765321 1111223456776655442 4
Q ss_pred hhcCcce
Q psy7718 80 ELKNGCL 86 (184)
Q Consensus 80 ~l~~gci 86 (184)
..+|..+
T Consensus 92 v~enl~~ 98 (243)
T 1mv5_A 92 IRENLTY 98 (243)
T ss_dssp HHHHTTS
T ss_pred HHHHHhh
Confidence 5555443
No 30
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.62 E-value=4.5e-16 Score=124.40 Aligned_cols=120 Identities=13% Similarity=0.077 Sum_probs=79.4
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc--ccccceeEecCCC-chhhhhhhhcC
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG--SAMEKSVSVGDNG-NLYEEWLELKN 83 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~--~~~~~~~~~~~~~-~l~~~~~~l~~ 83 (184)
+.+|+++||++.+|++++|+|+||||||||++.|+|..+|.+|.|..++..-. .......+++|++ ..+..++..+|
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~en 99 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDE 99 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHH
Confidence 46999999999999999999999999999999999999999999988653211 1122344567763 22223344444
Q ss_pred cceeccc--c-cc----hHH----------------------------HHHHHHHHcCCCCEEEE-ccCCCCCChhHHHH
Q psy7718 84 GCLCCSV--K-DN----GVK----------------------------AIENLMLKRGKFDYILL-ETTGLADPGPIAKV 127 (184)
Q Consensus 84 gci~~~~--~-~~----~~~----------------------------~l~~ll~~~~~~d~iii-E~tg~~dp~~i~~~ 127 (184)
..+.... . .. ... .|++.+ ..+|+++++ |||...||.....+
T Consensus 100 l~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL--~~~p~lllLDEPts~LD~~~~~~l 177 (266)
T 2yz2_A 100 VAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVI--VHEPDILILDEPLVGLDREGKTDL 177 (266)
T ss_dssp HHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHH--TTCCSEEEEESTTTTCCHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHH--HcCCCEEEEcCccccCCHHHHHHH
Confidence 3332110 0 00 011 112211 268999999 99999999866554
Q ss_pred h
Q psy7718 128 F 128 (184)
Q Consensus 128 l 128 (184)
+
T Consensus 178 ~ 178 (266)
T 2yz2_A 178 L 178 (266)
T ss_dssp H
T ss_pred H
Confidence 3
No 31
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.61 E-value=1.4e-15 Score=119.66 Aligned_cols=50 Identities=20% Similarity=0.323 Sum_probs=45.8
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
++.+|+++||++.+|++++|+|+||||||||++.|+|..+|.+|.|..++
T Consensus 17 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g 66 (237)
T 2cbz_A 17 DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG 66 (237)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS
T ss_pred CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 46799999999999999999999999999999999999888888887654
No 32
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.61 E-value=4.9e-16 Score=124.07 Aligned_cols=117 Identities=15% Similarity=0.017 Sum_probs=76.9
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc--cccccee-EecCCCchhhhhhhhcC
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG--SAMEKSV-SVGDNGNLYEEWLELKN 83 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~--~~~~~~~-~~~~~~~l~~~~~~l~~ 83 (184)
+.+|+++||+++ |++++|+|+||||||||++.|+|.. |.+|.|..++..-. ....... +++|++.+ .++..+|
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~en 93 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVNDI 93 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBHHHH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCcc--CCcHHHH
Confidence 569999999999 9999999999999999999999999 99999988652110 1112233 45665443 2333333
Q ss_pred cceecc-----------------cc------------c--chHHHHHHHHHHcCCCCEEEE-ccCCCCCChhHHHHhh
Q psy7718 84 GCLCCS-----------------VK------------D--NGVKAIENLMLKRGKFDYILL-ETTGLADPGPIAKVFW 129 (184)
Q Consensus 84 gci~~~-----------------~~------------~--~~~~~l~~ll~~~~~~d~iii-E~tg~~dp~~i~~~l~ 129 (184)
..+... +. + ...-.|++.+ ..+|+++++ |||...||....+++.
T Consensus 94 l~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL--~~~p~lllLDEPts~LD~~~~~~l~~ 169 (263)
T 2pjz_A 94 VYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLAL--ASQPEIVGLDEPFENVDAARRHVISR 169 (263)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHH--HTCCSEEEEECTTTTCCHHHHHHHHH
T ss_pred HHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHH--HhCCCEEEEECCccccCHHHHHHHHH
Confidence 222110 00 0 0011233333 268999999 9999999987666543
No 33
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.59 E-value=7e-16 Score=123.38 Aligned_cols=52 Identities=21% Similarity=0.198 Sum_probs=45.8
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhc--CCCCeEEEEecc
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTE--QHDKKIAVILNE 55 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~--~~~~~~~vi~~~ 55 (184)
|+++.+|++|||++.+|++++|+|+||||||||++.|+|. .++.+|.|..++
T Consensus 30 y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g 83 (267)
T 2zu0_C 30 VEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG 83 (267)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETT
T ss_pred ECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECC
Confidence 3456799999999999999999999999999999999997 356788888765
No 34
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.58 E-value=2.7e-15 Score=122.19 Aligned_cols=120 Identities=18% Similarity=0.117 Sum_probs=82.5
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcc-----cccceeEecCCCchhhhhhh
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGS-----AMEKSVSVGDNGNLYEEWLE 80 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~ 80 (184)
+..+|++|||++++|++++|+|+||||||||++.|++...|.+|.|..++..-.. ......+++|++.++.. +.
T Consensus 66 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Tv 144 (306)
T 3nh6_A 66 GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFND-TI 144 (306)
T ss_dssp TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSE-EH
T ss_pred CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcc-cH
Confidence 4679999999999999999999999999999999999999999999886543211 12234467777665532 44
Q ss_pred hcCcceeccccc---------------------------------------chHHHHHHHHHHcCCCCEEEE-ccCCCCC
Q psy7718 81 LKNGCLCCSVKD---------------------------------------NGVKAIENLMLKRGKFDYILL-ETTGLAD 120 (184)
Q Consensus 81 l~~gci~~~~~~---------------------------------------~~~~~l~~ll~~~~~~d~iii-E~tg~~d 120 (184)
.+|..+...... ...-.|++.+. .+|+++|+ |||...|
T Consensus 145 ~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~--~~p~iLlLDEPts~LD 222 (306)
T 3nh6_A 145 ADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTIL--KAPGIILLDEATSALD 222 (306)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHH--HCCSEEEEECCSSCCC
T ss_pred HHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHH--hCCCEEEEECCcccCC
Confidence 444433211000 00113333332 47999999 9999999
Q ss_pred ChhHHHHh
Q psy7718 121 PGPIAKVF 128 (184)
Q Consensus 121 p~~i~~~l 128 (184)
|..-..++
T Consensus 223 ~~~~~~i~ 230 (306)
T 3nh6_A 223 TSNERAIQ 230 (306)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 97655443
No 35
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.58 E-value=9.2e-16 Score=121.56 Aligned_cols=52 Identities=19% Similarity=0.174 Sum_probs=46.4
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhc--CCCCeEEEEecc
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTE--QHDKKIAVILNE 55 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~--~~~~~~~vi~~~ 55 (184)
|.++.+|++|||++.+|++++|+|+||||||||++.|+|. .+|.+|.|..++
T Consensus 13 y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g 66 (250)
T 2d2e_A 13 IDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDG 66 (250)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETT
T ss_pred ECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECC
Confidence 4456799999999999999999999999999999999997 577888888765
No 36
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.57 E-value=7.8e-15 Score=116.86 Aligned_cols=118 Identities=13% Similarity=0.021 Sum_probs=77.3
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc-----ccccceeEecCCCchhhhhhhh
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG-----SAMEKSVSVGDNGNLYEEWLEL 81 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~l 81 (184)
+.+|++|||++++|++++|+|+||||||||++.|+|..++ +|.|..++..-. .......+++|++.++. .+..
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~ 110 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-ETIK 110 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-EEHH
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-cCHH
Confidence 4699999999999999999999999999999999998776 788887653211 11123446677655443 2333
Q ss_pred cCcceec-------------------------------------cccc--chHHHHHHHHHHcCCCCEEEE-ccCCCCCC
Q psy7718 82 KNGCLCC-------------------------------------SVKD--NGVKAIENLMLKRGKFDYILL-ETTGLADP 121 (184)
Q Consensus 82 ~~gci~~-------------------------------------~~~~--~~~~~l~~ll~~~~~~d~iii-E~tg~~dp 121 (184)
+|..+.. .+.+ ...-.|++.+. .+|+++++ |||...||
T Consensus 111 enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~--~~p~lllLDEPts~LD~ 188 (260)
T 2ghi_A 111 YNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLL--KDPKIVIFDEATSSLDS 188 (260)
T ss_dssp HHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHH--HCCSEEEEECCCCTTCH
T ss_pred HHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHH--cCCCEEEEECccccCCH
Confidence 3332210 0000 00112333332 47999999 99999999
Q ss_pred hhHHHHh
Q psy7718 122 GPIAKVF 128 (184)
Q Consensus 122 ~~i~~~l 128 (184)
.....++
T Consensus 189 ~~~~~i~ 195 (260)
T 2ghi_A 189 KTEYLFQ 195 (260)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8655443
No 37
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.54 E-value=2.2e-14 Score=115.97 Aligned_cols=50 Identities=22% Similarity=0.256 Sum_probs=45.7
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecc
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~ 55 (184)
.+.+|+++||++.+|++++|+|+||||||||++.|+|..+|.+|.|..++
T Consensus 50 ~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g 99 (290)
T 2bbs_A 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 99 (290)
T ss_dssp CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS
T ss_pred CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC
Confidence 35799999999999999999999999999999999999888888887654
No 38
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.52 E-value=1.9e-14 Score=120.74 Aligned_cols=120 Identities=15% Similarity=0.109 Sum_probs=82.1
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcc-----cccceeEecCCCchhhhhh
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGS-----AMEKSVSVGDNGNLYEEWL 79 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~-----~~~~~~~~~~~~~l~~~~~ 79 (184)
++..+|++|||++.+|++++|+||||||||||+++|+|..+ .+|.|..++..-.. ..+....++|+..++. .+
T Consensus 32 ~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~t 109 (390)
T 3gd7_A 32 GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-GT 109 (390)
T ss_dssp SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-EE
T ss_pred CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-cC
Confidence 45789999999999999999999999999999999999876 78888886543211 1234457888877664 34
Q ss_pred hhcCcceecccc------------------------------------c--chHHHHHHHHHHcCCCCEEEE-ccCCCCC
Q psy7718 80 ELKNGCLCCSVK------------------------------------D--NGVKAIENLMLKRGKFDYILL-ETTGLAD 120 (184)
Q Consensus 80 ~l~~gci~~~~~------------------------------------~--~~~~~l~~ll~~~~~~d~iii-E~tg~~d 120 (184)
..+|........ + ...-+|++.+ ..+|+++++ ||+...|
T Consensus 110 v~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL--~~~P~lLLLDEPts~LD 187 (390)
T 3gd7_A 110 FRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSV--LSKAKILLLDEPSAHLD 187 (390)
T ss_dssp HHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHH--HTTCCEEEEESHHHHSC
T ss_pred HHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHH--hcCCCEEEEeCCccCCC
Confidence 444433111000 0 0112334433 258999999 9999999
Q ss_pred ChhHHHHh
Q psy7718 121 PGPIAKVF 128 (184)
Q Consensus 121 p~~i~~~l 128 (184)
|....++.
T Consensus 188 ~~~~~~l~ 195 (390)
T 3gd7_A 188 PVTYQIIR 195 (390)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 97655443
No 39
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.51 E-value=4.1e-14 Score=124.22 Aligned_cols=119 Identities=15% Similarity=0.111 Sum_probs=81.5
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc-----ccccceeEecCCCchhhhhhhh
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG-----SAMEKSVSVGDNGNLYEEWLEL 81 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~l 81 (184)
+++|+++||++++|++++|+|+||||||||++.|+|..+|.+|.|..++..-. ........++|++.+++. +..
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~ 434 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIA 434 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccc-cHH
Confidence 67999999999999999999999999999999999998888888887653211 112234467777666543 555
Q ss_pred cCcceec--cccc-ch-------------------------------------HHHHHHHHHHcCCCCEEEE-ccCCCCC
Q psy7718 82 KNGCLCC--SVKD-NG-------------------------------------VKAIENLMLKRGKFDYILL-ETTGLAD 120 (184)
Q Consensus 82 ~~gci~~--~~~~-~~-------------------------------------~~~l~~ll~~~~~~d~iii-E~tg~~d 120 (184)
+|..+.. .... .. +-.|++.+ ..+|+++++ |||...|
T Consensus 435 eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral--~~~p~illlDEpts~LD 512 (582)
T 3b5x_A 435 NNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARAL--LRDAPVLILDEATSALD 512 (582)
T ss_pred HHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHH--HcCCCEEEEECccccCC
Confidence 5554322 1000 00 01122222 268999999 9999999
Q ss_pred ChhHHHHh
Q psy7718 121 PGPIAKVF 128 (184)
Q Consensus 121 p~~i~~~l 128 (184)
|..-.++.
T Consensus 513 ~~~~~~i~ 520 (582)
T 3b5x_A 513 TESERAIQ 520 (582)
T ss_pred HHHHHHHH
Confidence 98655443
No 40
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.49 E-value=5.7e-14 Score=123.24 Aligned_cols=119 Identities=16% Similarity=0.164 Sum_probs=81.6
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc-----ccccceeEecCCCchhhhhhh
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG-----SAMEKSVSVGDNGNLYEEWLE 80 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~ 80 (184)
+.++|+++||++++|++++|+||||||||||++.|+|..+|.+|.|..++..-. .......+++|++.++.. +.
T Consensus 353 ~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv 431 (578)
T 4a82_A 353 EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TV 431 (578)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-BH
T ss_pred CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-cH
Confidence 357999999999999999999999999999999999999999999988653211 112234467777665543 44
Q ss_pred hcCcceeccccc---------------------------------------chHHHHHHHHHHcCCCCEEEE-ccCCCCC
Q psy7718 81 LKNGCLCCSVKD---------------------------------------NGVKAIENLMLKRGKFDYILL-ETTGLAD 120 (184)
Q Consensus 81 l~~gci~~~~~~---------------------------------------~~~~~l~~ll~~~~~~d~iii-E~tg~~d 120 (184)
.+|.++...... ..+-.|++.+- .+|+++++ |||...|
T Consensus 432 ~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~--~~p~illlDEpts~LD 509 (578)
T 4a82_A 432 KENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFL--NNPPILILDEATSALD 509 (578)
T ss_dssp HHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHH--HCCSEEEEESTTTTCC
T ss_pred HHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHH--cCCCEEEEECccccCC
Confidence 445433211000 00112333332 47999999 9999999
Q ss_pred ChhHHHH
Q psy7718 121 PGPIAKV 127 (184)
Q Consensus 121 p~~i~~~ 127 (184)
|..-..+
T Consensus 510 ~~~~~~i 516 (578)
T 4a82_A 510 LESESII 516 (578)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9764443
No 41
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.49 E-value=1.1e-13 Score=121.60 Aligned_cols=121 Identities=18% Similarity=0.166 Sum_probs=82.4
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcc-----cccceeEecCCCchhhhhh
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGS-----AMEKSVSVGDNGNLYEEWL 79 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~-----~~~~~~~~~~~~~l~~~~~ 79 (184)
.++++|+++||++++|++++|+|+||||||||++.|++..+|.+|.|..++..-.. ......+++|++.++.. +
T Consensus 354 ~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-t 432 (587)
T 3qf4_A 354 NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG-T 432 (587)
T ss_dssp SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSE-E
T ss_pred CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCc-c
Confidence 34679999999999999999999999999999999999999999999886543211 12234467777655432 3
Q ss_pred hhcCcceeccccc---------------------------------------chHHHHHHHHHHcCCCCEEEE-ccCCCC
Q psy7718 80 ELKNGCLCCSVKD---------------------------------------NGVKAIENLMLKRGKFDYILL-ETTGLA 119 (184)
Q Consensus 80 ~l~~gci~~~~~~---------------------------------------~~~~~l~~ll~~~~~~d~iii-E~tg~~ 119 (184)
..+|..+...... ..+-.|++.+ ..+|+++++ |||...
T Consensus 433 v~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal--~~~p~illlDEpts~L 510 (587)
T 3qf4_A 433 IKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARAL--VKKPKVLILDDCTSSV 510 (587)
T ss_dssp HHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHH--HTCCSEEEEESCCTTS
T ss_pred HHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHH--HcCCCEEEEECCcccC
Confidence 3444332211000 0011233333 258999999 999999
Q ss_pred CChhHHHHh
Q psy7718 120 DPGPIAKVF 128 (184)
Q Consensus 120 dp~~i~~~l 128 (184)
||..-.++.
T Consensus 511 D~~~~~~i~ 519 (587)
T 3qf4_A 511 DPITEKRIL 519 (587)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 997654443
No 42
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.48 E-value=6.6e-14 Score=122.93 Aligned_cols=77 Identities=14% Similarity=0.143 Sum_probs=58.6
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCc-----ccccceeEecCCCchhhhhhhh
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG-----SAMEKSVSVGDNGNLYEEWLEL 81 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~l 81 (184)
+++|+++||++++|++++|+|+||||||||++.|+|..+|.+|.|..++..-. ........++|++.+++. +..
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~ 434 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVA 434 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-BHH
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCC-CHH
Confidence 67999999999999999999999999999999999999999999988653211 111234467777655442 444
Q ss_pred cCc
Q psy7718 82 KNG 84 (184)
Q Consensus 82 ~~g 84 (184)
+|.
T Consensus 435 eni 437 (582)
T 3b60_A 435 NNI 437 (582)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 43
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.45 E-value=8.2e-14 Score=122.61 Aligned_cols=77 Identities=18% Similarity=0.138 Sum_probs=57.7
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcc-----cccceeEecCCCchhhhhhhh
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGS-----AMEKSVSVGDNGNLYEEWLEL 81 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~l 81 (184)
.++|+++||++++|++++|+|+||||||||++.|+|..+|.+|.|..++..-.. .......++|++.+++. +..
T Consensus 357 ~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~-tv~ 435 (595)
T 2yl4_A 357 VPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSC-SIA 435 (595)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSS-BHH
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCC-CHH
Confidence 469999999999999999999999999999999999999999999886532111 11234466776655432 344
Q ss_pred cCc
Q psy7718 82 KNG 84 (184)
Q Consensus 82 ~~g 84 (184)
+|.
T Consensus 436 eni 438 (595)
T 2yl4_A 436 ENI 438 (595)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 44
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.43 E-value=1.2e-13 Score=121.72 Aligned_cols=119 Identities=15% Similarity=0.147 Sum_probs=80.6
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcc-----cccceeEecCCCchhhhhhh
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGS-----AMEKSVSVGDNGNLYEEWLE 80 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~ 80 (184)
++++|+|+||++++|++++|+|+||||||||++.|+|..+|.+|.|..++..-.. .......++|++.++.. +.
T Consensus 367 ~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv 445 (598)
T 3qf4_B 367 KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFST-TV 445 (598)
T ss_dssp SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSS-BH
T ss_pred CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccc-cH
Confidence 4679999999999999999999999999999999999999999999886533211 11234456776655432 33
Q ss_pred hcCcceecc-------------------------------------ccc--chHHHHHHHHHHcCCCCEEEE-ccCCCCC
Q psy7718 81 LKNGCLCCS-------------------------------------VKD--NGVKAIENLMLKRGKFDYILL-ETTGLAD 120 (184)
Q Consensus 81 l~~gci~~~-------------------------------------~~~--~~~~~l~~ll~~~~~~d~iii-E~tg~~d 120 (184)
.+|.++... +.+ ..+-.|++.+ ..+|+++++ |||...|
T Consensus 446 ~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral--~~~p~illlDEpts~LD 523 (598)
T 3qf4_B 446 KENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAF--LANPKILILDEATSNVD 523 (598)
T ss_dssp HHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHH--HTCCSEEEECCCCTTCC
T ss_pred HHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHH--hcCCCEEEEECCccCCC
Confidence 333322110 000 0011334433 258999999 9999999
Q ss_pred ChhHHHH
Q psy7718 121 PGPIAKV 127 (184)
Q Consensus 121 p~~i~~~ 127 (184)
|..-..+
T Consensus 524 ~~~~~~i 530 (598)
T 3qf4_B 524 TKTEKSI 530 (598)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9754443
No 45
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=99.31 E-value=5.3e-13 Score=99.77 Aligned_cols=126 Identities=18% Similarity=0.191 Sum_probs=72.3
Q ss_pred CccEEEEEecCCChHHHHHHHHHhcC--CCCeEEEEecccCCcccc----cceeEecCCCchhhhhhhhcCcceecccc-
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTEQ--HDKKIAVILNEFGEGSAM----EKSVSVGDNGNLYEEWLELKNGCLCCSVK- 91 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~~--~~~~~~vi~~~~~~~~~~----~~~~~~~~~~~l~~~~~~l~~gci~~~~~- 91 (184)
+.++++|+|++||||||+++.|++.. .+.++.++.++.+...++ .+.....+.++ ..+...+++|.||..+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~~~diD~~~g~D~~r~~~aGa--~~v~~~s~~~~~~~~~~ 80 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGVDSVRHERAGA--VATAVEGDGLLQLHLRR 80 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--------------------C--SEEEEEETTEEEEEECC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCCCcccccCCChhHHHHHhcCC--CeEEeccCCEEEEEecc
Confidence 46799999999999999999999863 567889999887643221 12222223222 2244567888877552
Q ss_pred -cchHHHHHHHHHHcCCCCEEEEccCCCCCChhHHHHhhhccccCCceEeCcEEEEEc
Q psy7718 92 -DNGVKAIENLMLKRGKFDYILLETTGLADPGPIAKVFWLDKELGSDIYLDGIVTVVD 148 (184)
Q Consensus 92 -~~~~~~l~~ll~~~~~~d~iiiE~tg~~dp~~i~~~l~~~~~~~~~~~l~~vi~vvD 148 (184)
+.....+.+++.+. .+|++++|+++. +|.+..++++..........+.++++++-
T Consensus 81 ~~~~~~~~~~ll~~~-~~D~vlVEg~~~-~~~pki~~~r~~~~~~~l~~~~~i~av~~ 136 (169)
T 1xjc_A 81 PLWRLDDVLALYAPL-RLDLVLVEGYKQ-ERHPKVVLVRSEEDWASLQHLANIRAVIA 136 (169)
T ss_dssp SCCCHHHHHHHHGGG-CCSEEEEECCTT-SCSCEEEEESSHHHHHHHTTSTTEEEEEE
T ss_pred cccchHHHHHHHHhc-CCCEEEEeCCCC-CCCCEEEEEecCCCCcccccccceEEEEe
Confidence 21234455666555 899999999996 56665554432111100012356777773
No 46
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.30 E-value=4e-12 Score=120.58 Aligned_cols=71 Identities=13% Similarity=0.181 Sum_probs=56.3
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcc-----cccceeEecCCCchhh
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGS-----AMEKSVSVGDNGNLYE 76 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~-----~~~~~~~~~~~~~l~~ 76 (184)
+.+||+||||++++|+.++|+|++||||||+++.|.+...|.+|.|..++..-.. ...+...++|++.++.
T Consensus 1091 ~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~ 1166 (1321)
T 4f4c_A 1091 EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD 1166 (1321)
T ss_dssp SSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCS
T ss_pred CCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeC
Confidence 3579999999999999999999999999999999999999988999887543221 1223345777766543
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.30 E-value=7.6e-12 Score=118.44 Aligned_cols=50 Identities=18% Similarity=0.154 Sum_probs=46.8
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEeccc
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEF 56 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~ 56 (184)
.++|+++||++++|++++|+|+||||||||++.|.+..+|.+|.|..++.
T Consensus 1046 ~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~ 1095 (1284)
T 3g5u_A 1046 IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGK 1095 (1284)
T ss_dssp CCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSS
T ss_pred CeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCE
Confidence 46999999999999999999999999999999999999999999988654
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.29 E-value=7.3e-13 Score=116.81 Aligned_cols=44 Identities=25% Similarity=0.268 Sum_probs=38.6
Q ss_pred CCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEE
Q psy7718 9 VPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVI 52 (184)
Q Consensus 9 ~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi 52 (184)
.|+.++|++.+|++++|+|+||||||||++.|+|..+|.+|.|.
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~ 414 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVE 414 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCC
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence 57788888999999999999999999999999998877665553
No 49
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.26 E-value=8.7e-12 Score=118.03 Aligned_cols=69 Identities=13% Similarity=0.096 Sum_probs=54.3
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcc-----cccceeEecCCCchh
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGS-----AMEKSVSVGDNGNLY 75 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~-----~~~~~~~~~~~~~l~ 75 (184)
.++|+||||++++|++++|+|+||||||||++.|.+..+|.+|.|..++..-.. .......++|++.++
T Consensus 403 ~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~ 476 (1284)
T 3g5u_A 403 VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLF 476 (1284)
T ss_dssp CCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCC
T ss_pred CcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccC
Confidence 479999999999999999999999999999999999999999999886532111 112234566766544
No 50
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.26 E-value=4.7e-12 Score=112.81 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=30.2
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHH
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLL 37 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll 37 (184)
...+|++|||++++|++++|+||||||||||+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHh
Confidence 35689999999999999999999999999997
No 51
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.25 E-value=1.2e-12 Score=114.00 Aligned_cols=44 Identities=23% Similarity=0.263 Sum_probs=38.3
Q ss_pred CCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEE
Q psy7718 9 VPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVI 52 (184)
Q Consensus 9 ~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi 52 (184)
.|+.++|++.+|++++|+|+||||||||++.|+|..++.+|.|.
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~ 344 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIE 344 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCC
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 47778888899999999999999999999999998877665543
No 52
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.24 E-value=4e-12 Score=110.68 Aligned_cols=46 Identities=22% Similarity=0.132 Sum_probs=40.0
Q ss_pred CCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEec
Q psy7718 9 VPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILN 54 (184)
Q Consensus 9 ~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~ 54 (184)
.|+.++|++.+|++++|+|+||||||||++.|+|..+|.+|.|..+
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 328 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPE 328 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESS
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEC
Confidence 4566678899999999999999999999999999988888777643
No 53
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.23 E-value=2.4e-11 Score=115.33 Aligned_cols=71 Identities=14% Similarity=0.196 Sum_probs=55.9
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcc-----cccceeEecCCCchh
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGS-----AMEKSVSVGDNGNLY 75 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~-----~~~~~~~~~~~~~l~ 75 (184)
.+.++|+|+||++++|+.++|+|++||||||+++.|++...+.+|.|..++..-.. ......++.|++.++
T Consensus 429 ~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf 504 (1321)
T 4f4c_A 429 PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALF 504 (1321)
T ss_dssp TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCC
T ss_pred CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceee
Confidence 45789999999999999999999999999999999999999999999886532211 112233566665544
No 54
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.19 E-value=3.6e-11 Score=98.98 Aligned_cols=114 Identities=19% Similarity=0.202 Sum_probs=70.0
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcC--CCCeEEEEecccCCcccccceeEecCCCchhhhhhhhcCc
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQ--HDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLELKNG 84 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~--~~~~~~vi~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g 84 (184)
..++++++|++.++++++|+|+||||||||++.|++.. ...++.+...+............... ....+....+.
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~---~i~~v~q~~~~ 118 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT---RMARLAIDRNA 118 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGG---GSTTGGGCTTE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhh---hheeeccCccc
Confidence 35789999999999999999999999999999999864 34667777666543211000000000 00112222233
Q ss_pred ce-----ecccccchHHHHHHHH-HHcCCCCEEEEccCCCCCChh
Q psy7718 85 CL-----CCSVKDNGVKAIENLM-LKRGKFDYILLETTGLADPGP 123 (184)
Q Consensus 85 ci-----~~~~~~~~~~~l~~ll-~~~~~~d~iiiE~tg~~dp~~ 123 (184)
++ ||.+.+......+.+. ......+++++|+.|+.++..
T Consensus 119 ~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~ 163 (337)
T 2qm8_A 119 FIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSET 163 (337)
T ss_dssp EEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHH
T ss_pred ccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchh
Confidence 32 4555444333333321 124689999999999998753
No 55
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.16 E-value=1.9e-11 Score=107.74 Aligned_cols=43 Identities=16% Similarity=0.214 Sum_probs=38.1
Q ss_pred CCCccccceecCc-----cEEEEEecCCChHHHHHHHHHhcCCCCeEE
Q psy7718 8 EVPDLVPAELQPV-----PVTIITGYLGAGKTTLLNYILTEQHDKKIA 50 (184)
Q Consensus 8 ~~l~~v~l~v~~~-----~vi~i~G~~GsGKTTll~~L~~~~~~~~~~ 50 (184)
.+++++||++.+| ++++|+|+||||||||++.|.|..+|.+|.
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~ 408 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQ 408 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCC
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Confidence 4688999999998 789999999999999999999988776653
No 56
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.16 E-value=1.7e-12 Score=95.94 Aligned_cols=49 Identities=24% Similarity=0.226 Sum_probs=42.5
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEeccc
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEF 56 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~ 56 (184)
..+++++||++++|++++|+|+||||||||++.|++.. +.++.|..+++
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~ 68 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTY 68 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCE
Confidence 35789999999999999999999999999999999987 76676665543
No 57
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.16 E-value=3.1e-11 Score=93.37 Aligned_cols=48 Identities=19% Similarity=0.208 Sum_probs=27.7
Q ss_pred CCCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEE
Q psy7718 3 SDSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAV 51 (184)
Q Consensus 3 ~~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~v 51 (184)
|+.-...|++|||++++|++++|+||||||||||++.|++.. ++++.+
T Consensus 6 ~~~~~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-pG~i~~ 53 (218)
T 1z6g_A 6 HHHHHSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-PNYFYF 53 (218)
T ss_dssp ----------------CCCCEEEECSTTSSHHHHHHHHHHHS-TTTEEE
T ss_pred cccccccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-CCcEEE
Confidence 344467899999999999999999999999999999999977 334433
No 58
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.15 E-value=2.4e-11 Score=105.77 Aligned_cols=46 Identities=20% Similarity=0.099 Sum_probs=39.4
Q ss_pred CCCC-CCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEE
Q psy7718 4 DSDS-EVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIA 50 (184)
Q Consensus 4 ~~~~-~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~ 50 (184)
|++. .+++++| ++.+|++++|+|+||||||||++.|+|...|..|.
T Consensus 31 yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~ 77 (538)
T 1yqt_A 31 YGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCG 77 (538)
T ss_dssp CSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred ECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCc
Confidence 3444 4899999 99999999999999999999999999987665544
No 59
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.14 E-value=1.2e-11 Score=109.09 Aligned_cols=46 Identities=22% Similarity=0.095 Sum_probs=39.5
Q ss_pred CCCC-CCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEE
Q psy7718 4 DSDS-EVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIA 50 (184)
Q Consensus 4 ~~~~-~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~ 50 (184)
|++. .+++++| ++.+|++++|+|+||||||||++.|+|...|..|.
T Consensus 101 yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~ 147 (607)
T 3bk7_A 101 YGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE 147 (607)
T ss_dssp CSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTT
T ss_pred ECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCc
Confidence 3344 4899999 99999999999999999999999999987665554
No 60
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.14 E-value=2.9e-11 Score=111.08 Aligned_cols=39 Identities=23% Similarity=0.188 Sum_probs=36.0
Q ss_pred CCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHh
Q psy7718 4 DSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILT 42 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~ 42 (184)
|+++.+|+++||++.+|++++|+|+||||||||++.|++
T Consensus 445 yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 445 YGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred ECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 445679999999999999999999999999999999984
No 61
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.09 E-value=5.6e-11 Score=94.57 Aligned_cols=101 Identities=14% Similarity=0.131 Sum_probs=62.9
Q ss_pred CCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCC-eEEEEecccCCcccccc-eeEecCCCchhhhhhhhcCcc
Q psy7718 8 EVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDK-KIAVILNEFGEGSAMEK-SVSVGDNGNLYEEWLELKNGC 85 (184)
Q Consensus 8 ~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~-~~~vi~~~~~~~~~~~~-~~~~~~~~~l~~~~~~l~~gc 85 (184)
++|++++ +.++++++|+||||||||||++.|++...+. ++.|..++..-..+... ...+.|. ...+..
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~------~~gl~~-- 84 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQR------EVGEDT-- 84 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEE------EBTTTB--
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHH------HhCCCH--
Confidence 5788888 8899999999999999999999999976543 45555443211110000 0001110 000000
Q ss_pred eecccccchHHHHHHHHHHcCCCCEEEE-ccCCCCCChhHHHHhh
Q psy7718 86 LCCSVKDNGVKAIENLMLKRGKFDYILL-ETTGLADPGPIAKVFW 129 (184)
Q Consensus 86 i~~~~~~~~~~~l~~ll~~~~~~d~iii-E~tg~~dp~~i~~~l~ 129 (184)
..+...+++.+.. +||++++ ||+ ||..+..++.
T Consensus 85 ------~~l~~~la~aL~~--~p~illlDEp~---D~~~~~~~l~ 118 (261)
T 2eyu_A 85 ------KSFADALRAALRE--DPDVIFVGEMR---DLETVETALR 118 (261)
T ss_dssp ------SCHHHHHHHHHHH--CCSEEEESCCC---SHHHHHHHHH
T ss_pred ------HHHHHHHHHHHhh--CCCEEEeCCCC---CHHHHHHHHH
Confidence 2335567776643 7999999 998 8887665543
No 62
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.06 E-value=1.2e-10 Score=95.57 Aligned_cols=89 Identities=17% Similarity=0.167 Sum_probs=61.6
Q ss_pred CCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCCcccc--cceeEecCCCchhhhhhhhcCcce
Q psy7718 9 VPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAM--EKSVSVGDNGNLYEEWLELKNGCL 86 (184)
Q Consensus 9 ~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~~~~~--~~~~~~~~~~~l~~~~~~l~~gci 86 (184)
++++++|+++++++++|+|+||||||||++.|++...+.++.|..++..+.... ++.+. +
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~------------------~ 221 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQ------------------L 221 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEE------------------E
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEE------------------E
Confidence 578899999999999999999999999999999998887777776654321110 01000 0
Q ss_pred ecccccchHHHHHHHHHHcCCCCEEEE-ccCC
Q psy7718 87 CCSVKDNGVKAIENLMLKRGKFDYILL-ETTG 117 (184)
Q Consensus 87 ~~~~~~~~~~~l~~ll~~~~~~d~iii-E~tg 117 (184)
...........|++.+ ..+|+++++ |+++
T Consensus 222 ~~ggg~~~r~~la~aL--~~~p~ilildE~~~ 251 (330)
T 2pt7_A 222 FFGGNITSADCLKSCL--RMRPDRIILGELRS 251 (330)
T ss_dssp ECBTTBCHHHHHHHHT--TSCCSEEEECCCCS
T ss_pred EeCCChhHHHHHHHHh--hhCCCEEEEcCCCh
Confidence 0001123345666655 358999999 9998
No 63
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.02 E-value=3.2e-10 Score=87.91 Aligned_cols=109 Identities=16% Similarity=0.144 Sum_probs=65.0
Q ss_pred cceecCccEEEEEecCCChHHHHHHHHHhcCCC--CeEEEEecccCCc-ccccceeEecCCCchhhhhhh----hcCcce
Q psy7718 14 PAELQPVPVTIITGYLGAGKTTLLNYILTEQHD--KKIAVILNEFGEG-SAMEKSVSVGDNGNLYEEWLE----LKNGCL 86 (184)
Q Consensus 14 ~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~--~~~~vi~~~~~~~-~~~~~~~~~~~~~~l~~~~~~----l~~gci 86 (184)
.-++++|++++|+||||||||||++.|++..++ ..+.|........ .......++++....+..++. +++..+
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~ 89 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEV 89 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHH
Confidence 446889999999999999999999999998764 4454433221110 001112245666666666666 566554
Q ss_pred ecccccchHHHHHHHHHHcCCCCEEEEccCCCCCChhHHHHhh
Q psy7718 87 CCSVKDNGVKAIENLMLKRGKFDYILLETTGLADPGPIAKVFW 129 (184)
Q Consensus 87 ~~~~~~~~~~~l~~ll~~~~~~d~iiiE~tg~~dp~~i~~~l~ 129 (184)
....++.....+.+++. .++.+++. .||.....+..
T Consensus 90 ~~~~yg~~~~~v~~~l~---~G~illLD----LD~~~~~~i~~ 125 (219)
T 1s96_A 90 FGNYYGTSREAIEQVLA---TGVDVFLD----IDWQGAQQIRQ 125 (219)
T ss_dssp TTEEEEEEHHHHHHHHT---TTCEEEEE----CCHHHHHHHHH
T ss_pred HhccCCCCHHHHHHHHh---cCCeEEEE----ECHHHHHHHHH
Confidence 43333333445666553 46778878 78887776653
No 64
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.01 E-value=1.3e-10 Score=102.56 Aligned_cols=42 Identities=24% Similarity=0.235 Sum_probs=35.2
Q ss_pred CCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEE
Q psy7718 9 VPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAV 51 (184)
Q Consensus 9 ~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~v 51 (184)
.+++++ ++.+|++++|+|+||||||||++.|+|..+|..|.|
T Consensus 93 ~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i 134 (608)
T 3j16_B 93 KLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134 (608)
T ss_dssp EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred eecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence 455555 578999999999999999999999999887766654
No 65
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.99 E-value=1.9e-10 Score=100.16 Aligned_cols=42 Identities=21% Similarity=0.091 Sum_probs=33.6
Q ss_pred Cccccceec-CccEEEEEecCCChHHHHHHHHHhcCCCCeEEE
Q psy7718 10 PDLVPAELQ-PVPVTIITGYLGAGKTTLLNYILTEQHDKKIAV 51 (184)
Q Consensus 10 l~~v~l~v~-~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~v 51 (184)
|+.-.|... +|++++|+|+||||||||+|.|+|...|..|.+
T Consensus 14 f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i 56 (538)
T 3ozx_A 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP 56 (538)
T ss_dssp CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCT
T ss_pred eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCcc
Confidence 444444444 799999999999999999999999887766554
No 66
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.98 E-value=1.9e-10 Score=90.25 Aligned_cols=40 Identities=13% Similarity=-0.001 Sum_probs=25.4
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
+++.+|+++||++.++.+++|+|+|||||||+++.|.+..
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467999999999999999999999999999999998853
No 67
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.98 E-value=7.8e-10 Score=101.55 Aligned_cols=102 Identities=16% Similarity=0.047 Sum_probs=60.8
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHH--------HhcCCCCeEEEEecccCCccccccee-EecCCCchhh
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYI--------LTEQHDKKIAVILNEFGEGSAMEKSV-SVGDNGNLYE 76 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L--------~~~~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~l~~ 76 (184)
+..++++++|++.++++++|+|||||||||++|.+ .|...|.....+. ...+.. .+.....+..
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~-------~~d~i~~~ig~~d~l~~ 720 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVS-------IVDCILARVGAGDSQLK 720 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEE-------CCSEEEEECC-------
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccch-------HHHHHHHhcCchhhHHH
Confidence 46799999999999999999999999999999999 4433333322211 000000 0110000000
Q ss_pred hhhhhcCcceecccccchHHHHHHHHHHcCCCCEEEE-ccCCCCCChhH
Q psy7718 77 EWLELKNGCLCCSVKDNGVKAIENLMLKRGKFDYILL-ETTGLADPGPI 124 (184)
Q Consensus 77 ~~~~l~~gci~~~~~~~~~~~l~~ll~~~~~~d~iii-E~tg~~dp~~i 124 (184)
.+... ..-...+..++....+|+++++ ||+.+.||..-
T Consensus 721 ~lStf----------~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~ 759 (934)
T 3thx_A 721 GVSTF----------MAEMLETASILRSATKDSLIIIDELGRGTSTYDG 759 (934)
T ss_dssp --CHH----------HHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHH
T ss_pred hHhhh----------HHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHH
Confidence 11100 0112345555555678999999 99999999643
No 68
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.98 E-value=9.3e-10 Score=90.54 Aligned_cols=130 Identities=18% Similarity=0.175 Sum_probs=78.4
Q ss_pred CCCccccceecCccEEEEEecCCChHHHHHHHHHhcC--CCCeEEEEecccCCcccccceeEecCCCchhhhhhhhcCcc
Q psy7718 8 EVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQ--HDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLELKNGC 85 (184)
Q Consensus 8 ~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~--~~~~~~vi~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~gc 85 (184)
.++++++++..++++++|+|++|+||||+++.|++.. .+.++.++..+..........+ .. ......+....++|
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il--~d-~~~~~~~~~~~~~~ 120 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSIL--GD-KTRMNDLARAEAAF 120 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC------------------CTTTTCTTEE
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCccee--cc-cchHHhhccCCCce
Confidence 4677889999999999999999999999999999753 4567788877765422111111 00 00012233456788
Q ss_pred eecccccc-----hHHHHHHHHH-HcCCCCEEEEccCCCCCChhHHHHhhhccccCCceEeCcEEEEEcCCC
Q psy7718 86 LCCSVKDN-----GVKAIENLML-KRGKFDYILLETTGLADPGPIAKVFWLDKELGSDIYLDGIVTVVDCKH 151 (184)
Q Consensus 86 i~~~~~~~-----~~~~l~~ll~-~~~~~d~iiiE~tg~~dp~~i~~~l~~~~~~~~~~~l~~vi~vvDa~~ 151 (184)
+||...+. ....++.+.. ....++++++++.|..++.... . -..+.++.|+|+..
T Consensus 121 i~~~~~~~~l~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~~--~---------~~aD~vl~Vvd~~~ 181 (341)
T 2p67_A 121 IRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETEV--A---------RMVDCFISLQIAGG 181 (341)
T ss_dssp EEEECC-----CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHHH--H---------TTCSEEEEEECC--
T ss_pred eecCccccccchhHHHHHHHHHHhhccCCCEEEEeCCCccchHHHH--H---------HhCCEEEEEEeCCc
Confidence 88754221 1122222211 1357899999999998875432 1 13456788888764
No 69
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.98 E-value=4.1e-10 Score=91.35 Aligned_cols=44 Identities=23% Similarity=0.323 Sum_probs=36.1
Q ss_pred CccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEe
Q psy7718 10 PDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVIL 53 (184)
Q Consensus 10 l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~ 53 (184)
+++++|++.++++++|+|+|||||||+++.|++...+..+.|..
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l 133 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLM 133 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 46789999999999999999999999999999975443333433
No 70
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.97 E-value=3.2e-10 Score=104.27 Aligned_cols=48 Identities=21% Similarity=0.133 Sum_probs=45.4
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEec
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILN 54 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~ 54 (184)
+++|+++||++.+|++++|+|+||||||||++.|+|...|.+|.|..+
T Consensus 686 ~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~ 733 (986)
T 2iw3_A 686 KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTH 733 (986)
T ss_dssp SCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEEC
T ss_pred ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEc
Confidence 579999999999999999999999999999999999999989988775
No 71
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.96 E-value=2.4e-10 Score=101.82 Aligned_cols=35 Identities=29% Similarity=0.378 Sum_probs=32.2
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHH
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYIL 41 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~ 41 (184)
..+|++|||++++|++++|+|+||||||||++.++
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 45899999999999999999999999999998654
No 72
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=98.96 E-value=3.1e-10 Score=85.04 Aligned_cols=121 Identities=17% Similarity=0.196 Sum_probs=66.3
Q ss_pred cCccEEEEEecCCChHHHHHHHHHhcC--CCCeEEEEecccCCcccccceeEecCCCchhhhhhhhcCcc----eecccc
Q psy7718 18 QPVPVTIITGYLGAGKTTLLNYILTEQ--HDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLELKNGC----LCCSVK 91 (184)
Q Consensus 18 ~~~~vi~i~G~~GsGKTTll~~L~~~~--~~~~~~vi~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~gc----i~~~~~ 91 (184)
...++++|+|++|||||||++.|++.. .+.++.++.++.+...++.. ..+ ...-..+|| +||..+
T Consensus 4 ~~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~~~id~~----g~D-----s~~~~~~G~~~v~i~~~~~ 74 (174)
T 1np6_A 4 TMIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKP----GKD-----SYELRKAGAAQTIVASQQR 74 (174)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------------CHHHHTCSEEEEECSSE
T ss_pred CcceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCccccCCC----CCc-----eEEEEeCCcceeecccchh
Confidence 347899999999999999999999863 45677788876654322110 000 011112455 566432
Q ss_pred c--------chHHHHHHHHHHcC--CCCEEEEccCCCCCChhHHHHhhhccccCCce--EeCcEEEEEc
Q psy7718 92 D--------NGVKAIENLMLKRG--KFDYILLETTGLADPGPIAKVFWLDKELGSDI--YLDGIVTVVD 148 (184)
Q Consensus 92 ~--------~~~~~l~~ll~~~~--~~d~iiiE~tg~~dp~~i~~~l~~~~~~~~~~--~l~~vi~vvD 148 (184)
- .....|.+++.+.. ..|++++|+.+.. +.+...++.......... ..+++++++.
T Consensus 75 ~~~~~~~~~~~~~~L~~ll~r~~~~~~D~ilIEg~k~~-~~pki~v~~~~~~~~~~~~~~~~~i~av~~ 142 (174)
T 1np6_A 75 WALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHE-EIAKIVLFRDGAGHRPEELVIDRHVIAVAS 142 (174)
T ss_dssp EEEEEECSSSCCCCHHHHHHHSCGGGCSEEEEESCSSC-CSEEEEEECTTSSCCGGGCCCCTTEEEEEE
T ss_pred heeeeeccCCchhhHHHHHHhcCCCcchHHHHHHHhhc-CCCEEEEEecccCCcccCccCCCCEEEEEe
Confidence 1 11235666665433 3499999998864 345444443211111011 2467888884
No 73
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.90 E-value=1.4e-09 Score=93.51 Aligned_cols=44 Identities=23% Similarity=0.298 Sum_probs=36.4
Q ss_pred CccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEe
Q psy7718 10 PDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVIL 53 (184)
Q Consensus 10 l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~ 53 (184)
-+++||++.++.+++|+|+||||||||++.|++...+..+.|..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l 326 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVML 326 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEE
Confidence 46899999999999999999999999999999975443333433
No 74
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.90 E-value=1.1e-09 Score=100.45 Aligned_cols=38 Identities=26% Similarity=0.288 Sum_probs=35.1
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHh
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILT 42 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~ 42 (184)
++..++++++|++.++++++|+|||||||||++|.+..
T Consensus 658 ~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 658 QDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCceecccccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 35789999999999999999999999999999999864
No 75
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.88 E-value=9.4e-11 Score=100.24 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=37.9
Q ss_pred ccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeE-E-EEec
Q psy7718 11 DLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKI-A-VILN 54 (184)
Q Consensus 11 ~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~-~-vi~~ 54 (184)
+++||++.+|++++|+|+||||||||+|.|++...+.++ . |..+
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vd 174 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYIN 174 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEE
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEc
Confidence 468899999999999999999999999999998766666 5 5544
No 76
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.87 E-value=1.3e-09 Score=90.49 Aligned_cols=43 Identities=23% Similarity=0.336 Sum_probs=35.4
Q ss_pred ccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEe
Q psy7718 11 DLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVIL 53 (184)
Q Consensus 11 ~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~ 53 (184)
+.++|++.++++++|+|+|||||||+++.|++...+..+.|..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l 190 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLM 190 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEE
Confidence 5789999999999999999999999999999975443333433
No 77
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.87 E-value=8.2e-09 Score=85.21 Aligned_cols=119 Identities=18% Similarity=0.139 Sum_probs=61.2
Q ss_pred CccEEEEEecCCChHHHHHHHHHhcC--CCCeEEEEecccCCccc----ccceeEecCCCchh-hhhhhhcCcceecccc
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTEQ--HDKKIAVILNEFGEGSA----MEKSVSVGDNGNLY-EEWLELKNGCLCCSVK 91 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~~--~~~~~~vi~~~~~~~~~----~~~~~~~~~~~~l~-~~~~~l~~gci~~~~~ 91 (184)
++++++|+|++|||||||++.|++.. .+.++.|+.++...... ..+...+..-+.-. ..++....+|.||...
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t 152 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT 152 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence 37899999999999999999999853 45678888877654321 11111111110000 0122234456665443
Q ss_pred cchHHHHHHHHHHcCCCCEEEEccCCCCCChhHHHHhhhccccCCceEeCcEEEEEcCC
Q psy7718 92 DNGVKAIENLMLKRGKFDYILLETTGLADPGPIAKVFWLDKELGSDIYLDGIVTVVDCK 150 (184)
Q Consensus 92 ~~~~~~l~~ll~~~~~~d~iiiE~tg~~dp~~i~~~l~~~~~~~~~~~l~~vi~vvDa~ 150 (184)
.+....+.. + ....++++++|+.|+.++..- +.. ..+-++.|+|+.
T Consensus 153 r~~~~~~~~-~-~~~~~~~iliDT~Gi~~~~~~--l~~---------~~d~vl~V~d~~ 198 (349)
T 2www_A 153 RTTNEAILL-C-EGAGYDIILIETVGVGQSEFA--VAD---------MVDMFVLLLPPA 198 (349)
T ss_dssp TTHHHHHHH-H-HHTTCSEEEEECCCC--CHHH--HHT---------TCSEEEEEECCC
T ss_pred HHHHHHHHh-h-ccCCCCEEEEECCCcchhhhh--HHh---------hCCEEEEEEcCC
Confidence 344444432 2 246789999999998766421 111 244577888875
No 78
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.82 E-value=2e-09 Score=86.39 Aligned_cols=39 Identities=15% Similarity=0.050 Sum_probs=36.4
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
+..+|+++++.+.+|++++|+|+||||||||++.|++..
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999864
No 79
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.81 E-value=2.6e-09 Score=81.57 Aligned_cols=37 Identities=14% Similarity=0.137 Sum_probs=25.7
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCC
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQH 45 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~ 45 (184)
..+++| .++.+|++++|+|+||||||||++.|++..+
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 568888 7899999999999999999999999999764
No 80
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.80 E-value=1.9e-09 Score=80.06 Aligned_cols=30 Identities=17% Similarity=0.361 Sum_probs=27.9
Q ss_pred cccceecCccEEEEEecCCChHHHHHHHHH
Q psy7718 12 LVPAELQPVPVTIITGYLGAGKTTLLNYIL 41 (184)
Q Consensus 12 ~v~l~v~~~~vi~i~G~~GsGKTTll~~L~ 41 (184)
+|||++.+|++++|+|+||||||||++.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHS
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHc
Confidence 689999999999999999999999999644
No 81
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.79 E-value=6.5e-09 Score=94.21 Aligned_cols=37 Identities=19% Similarity=0.153 Sum_probs=34.3
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhc
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
+..++++++|+ .++++++|+|||||||||++|.+++.
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 46799999999 88999999999999999999999874
No 82
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.79 E-value=8.6e-10 Score=89.58 Aligned_cols=43 Identities=16% Similarity=0.091 Sum_probs=38.2
Q ss_pred CCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEe
Q psy7718 8 EVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVIL 53 (184)
Q Consensus 8 ~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~ 53 (184)
.+|+++||++++|++++|+|+||||||||++.|++.. +|.|+.
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~ 156 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLS 156 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEEC
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEE
Confidence 4789999999999999999999999999999999987 345554
No 83
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.79 E-value=7.6e-10 Score=99.84 Aligned_cols=35 Identities=29% Similarity=0.256 Sum_probs=32.4
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhc
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
+..++++++|+ +++++|+|||||||||++|.+++.
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhh
Confidence 46799999999 899999999999999999999875
No 84
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.78 E-value=7.2e-09 Score=84.37 Aligned_cols=30 Identities=13% Similarity=0.067 Sum_probs=27.2
Q ss_pred ecCccEEEEEecCCChHHHHHHHHHhcCCC
Q psy7718 17 LQPVPVTIITGYLGAGKTTLLNYILTEQHD 46 (184)
Q Consensus 17 v~~~~vi~i~G~~GsGKTTll~~L~~~~~~ 46 (184)
+.++++++|+|+||||||||++.|.+...+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 788999999999999999999999987543
No 85
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.78 E-value=9.2e-09 Score=85.21 Aligned_cols=40 Identities=23% Similarity=0.265 Sum_probs=32.5
Q ss_pred CCCCccccc-------eecCccEEEEEecCCChHHHHHHHHHhcCCC
Q psy7718 7 SEVPDLVPA-------ELQPVPVTIITGYLGAGKTTLLNYILTEQHD 46 (184)
Q Consensus 7 ~~~l~~v~l-------~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~ 46 (184)
...|+++.+ ...++.+++|+|+||||||||++.|++...+
T Consensus 103 ~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 103 VLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp CCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccC
Confidence 455666665 5677789999999999999999999987543
No 86
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.77 E-value=9.3e-10 Score=94.44 Aligned_cols=47 Identities=19% Similarity=0.082 Sum_probs=41.4
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEec
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILN 54 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~ 54 (184)
+.+|+++||++++ ++++|+|+||||||||++.|++...+.+|.|..+
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~ 63 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFR 63 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEEC
Confidence 5689999999999 9999999999999999999999877766665554
No 87
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.77 E-value=1.7e-09 Score=89.72 Aligned_cols=47 Identities=21% Similarity=0.349 Sum_probs=41.8
Q ss_pred CccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEeccc
Q psy7718 10 PDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEF 56 (184)
Q Consensus 10 l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~ 56 (184)
+++++|++++++.++|+|+||||||||++.|++...+.++.|..++.
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~ 211 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV 211 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc
Confidence 48999999999999999999999999999999988877777776654
No 88
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.75 E-value=1.5e-08 Score=84.75 Aligned_cols=36 Identities=22% Similarity=0.178 Sum_probs=32.6
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhc
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
..++++++|++.+| +++|+|+||||||||++.|...
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l 83 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999 9999999999999999998654
No 89
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.75 E-value=2e-09 Score=82.54 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=26.0
Q ss_pred eecCccEEEEEecCCChHHHHHHHHHhc
Q psy7718 16 ELQPVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 16 ~v~~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
-+++|++++|+|+||||||||++.|++.
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999999999999999984
No 90
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.74 E-value=2.9e-09 Score=82.48 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=22.8
Q ss_pred CCCccccceecCccEEEEEecCCChHHHHHHHHH-hcCC
Q psy7718 8 EVPDLVPAELQPVPVTIITGYLGAGKTTLLNYIL-TEQH 45 (184)
Q Consensus 8 ~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~-~~~~ 45 (184)
.-.+++||++.+|++++|+|||||||||+++.|. +...
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 3578999999999999999999999999999999 8753
No 91
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.74 E-value=7.3e-09 Score=86.26 Aligned_cols=99 Identities=16% Similarity=0.120 Sum_probs=57.2
Q ss_pred CCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCC-eEEEEecccC-CcccccceeEecCCCchhhhhhhhcCcce
Q psy7718 9 VPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDK-KIAVILNEFG-EGSAMEKSVSVGDNGNLYEEWLELKNGCL 86 (184)
Q Consensus 9 ~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~-~~~vi~~~~~-~~~~~~~~~~~~~~~~l~~~~~~l~~gci 86 (184)
+|++++ +.++.+++|+|+||||||||++.|++...+. ++.|+..+-. +.........+.|.. + .+.
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~-----~-g~~---- 194 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQRE-----V-GED---- 194 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEE-----B-TTT----
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeee-----c-CCC----
Confidence 555554 6789999999999999999999999976443 4455433211 100000111122210 0 000
Q ss_pred ecccccchHHHHHHHHHHcCCCCEEEE-ccCCCCCChhHHHHh
Q psy7718 87 CCSVKDNGVKAIENLMLKRGKFDYILL-ETTGLADPGPIAKVF 128 (184)
Q Consensus 87 ~~~~~~~~~~~l~~ll~~~~~~d~iii-E~tg~~dp~~i~~~l 128 (184)
...+...+.+.+. .+||++++ |++ |++.+..++
T Consensus 195 ----~~~~~~~l~~~L~--~~pd~illdE~~---d~e~~~~~l 228 (372)
T 2ewv_A 195 ----TKSFADALRAALR--EDPDVIFVGEMR---DLETVETAL 228 (372)
T ss_dssp ----BSCSHHHHHHHTT--SCCSEEEESCCC---SHHHHHHHH
T ss_pred ----HHHHHHHHHHHhh--hCcCEEEECCCC---CHHHHHHHH
Confidence 0123455666553 48999999 997 666655544
No 92
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.72 E-value=1.3e-08 Score=76.40 Aligned_cols=23 Identities=48% Similarity=0.585 Sum_probs=21.2
Q ss_pred EEEEEecCCChHHHHHHHHHhcC
Q psy7718 22 VTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
.++|+|+||||||||++.|++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999865
No 93
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.72 E-value=6.4e-09 Score=85.87 Aligned_cols=48 Identities=23% Similarity=0.094 Sum_probs=42.6
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEec
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILN 54 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~ 54 (184)
+..+++++ |++.+|++++|.|+||||||||++.|++...+..+.+...
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~ 105 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALI 105 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEE
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEe
Confidence 46789999 9999999999999999999999999999988877665543
No 94
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.71 E-value=6.9e-09 Score=78.37 Aligned_cols=32 Identities=25% Similarity=0.372 Sum_probs=26.2
Q ss_pred cceecCccEEEEEecCCChHHHHHHHHHhcCC
Q psy7718 14 PAELQPVPVTIITGYLGAGKTTLLNYILTEQH 45 (184)
Q Consensus 14 ~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~ 45 (184)
|++|.+|++++|+|+|||||||+++.|.+..+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 67899999999999999999999999998753
No 95
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.71 E-value=7.2e-10 Score=93.51 Aligned_cols=45 Identities=20% Similarity=0.338 Sum_probs=39.0
Q ss_pred CCCCccccceecCcc--------------------EEEEEecCCChHHHHHHHHHhcCCCCeEEE
Q psy7718 7 SEVPDLVPAELQPVP--------------------VTIITGYLGAGKTTLLNYILTEQHDKKIAV 51 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~--------------------vi~i~G~~GsGKTTll~~L~~~~~~~~~~v 51 (184)
+.++++|||++.+|+ +++|+|+||||||||+|.|+|...+.+|.|
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI 100 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAA 100 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSC
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceE
Confidence 358999999999999 999999999999999999999765554443
No 96
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.70 E-value=7.4e-09 Score=88.01 Aligned_cols=50 Identities=16% Similarity=0.042 Sum_probs=44.6
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEeccc
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEF 56 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~ 56 (184)
+..+++++ |++.+|++++|.|+||||||||++.|++...+..+.|..++.
T Consensus 144 g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~ 193 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGE 193 (438)
T ss_dssp SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEece
Confidence 46799999 999999999999999999999999999998888887766543
No 97
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.65 E-value=8.7e-09 Score=78.88 Aligned_cols=49 Identities=14% Similarity=0.060 Sum_probs=38.7
Q ss_pred CCCCCccccc-eecCccEEEEEecCCChHHHHHHHHHhcC--CCCeEEEEec
Q psy7718 6 DSEVPDLVPA-ELQPVPVTIITGYLGAGKTTLLNYILTEQ--HDKKIAVILN 54 (184)
Q Consensus 6 ~~~~l~~v~l-~v~~~~vi~i~G~~GsGKTTll~~L~~~~--~~~~~~vi~~ 54 (184)
+.+.||++.+ .+.+|++++|+|+||||||||++.+++.. .+.++.++..
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 4567888888 89999999999999999999999999753 2344544443
No 98
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.64 E-value=4.7e-08 Score=79.28 Aligned_cols=35 Identities=23% Similarity=0.259 Sum_probs=28.4
Q ss_pred CccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEe
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVIL 53 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~ 53 (184)
++++++|+|+|||||||+++.|++...+..+.|..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l 135 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMF 135 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEE
Confidence 58899999999999999999999976544444443
No 99
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.64 E-value=4.4e-08 Score=89.81 Aligned_cols=31 Identities=23% Similarity=0.317 Sum_probs=29.2
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHH
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLL 37 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll 37 (184)
...|++|||+++.|++++|+|+||||||||+
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhH
Confidence 3479999999999999999999999999997
No 100
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.63 E-value=9e-09 Score=89.21 Aligned_cols=51 Identities=20% Similarity=0.047 Sum_probs=42.0
Q ss_pred CCCCCCccccc-eecCccEEEEEecCCChHHHHHHH--HHhcCCCCeEEEEecc
Q psy7718 5 SDSEVPDLVPA-ELQPVPVTIITGYLGAGKTTLLNY--ILTEQHDKKIAVILNE 55 (184)
Q Consensus 5 ~~~~~l~~v~l-~v~~~~vi~i~G~~GsGKTTll~~--L~~~~~~~~~~vi~~~ 55 (184)
.+.++|++|+| .+.+|++++|+|+||||||||++. +.+..++.++.|..+.
T Consensus 23 ~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g 76 (525)
T 1tf7_A 23 TMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF 76 (525)
T ss_dssp CCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 35779999999 999999999999999999999999 5576554455665543
No 101
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.63 E-value=1.2e-08 Score=94.60 Aligned_cols=38 Identities=21% Similarity=0.238 Sum_probs=34.5
Q ss_pred CCCCCCccccceecC-------ccEEEEEecCCChHHHHHHHHHhc
Q psy7718 5 SDSEVPDLVPAELQP-------VPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~-------~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
++..++++++|++.+ +++++|+|||||||||++|.+ +.
T Consensus 767 ~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl 811 (1022)
T 2o8b_B 767 GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GL 811 (1022)
T ss_dssp CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HH
T ss_pred CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HH
Confidence 446799999999987 899999999999999999999 64
No 102
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.62 E-value=8.6e-09 Score=87.17 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=33.6
Q ss_pred CCCCCCCccccceecCccE--EEEEecCCChHHHHHHHHHhc
Q psy7718 4 DSDSEVPDLVPAELQPVPV--TIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 4 ~~~~~~l~~v~l~v~~~~v--i~i~G~~GsGKTTll~~L~~~ 43 (184)
+++.+ ++++||++++|.+ ++|+|+||||||||++.|++.
T Consensus 25 y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 25 FDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred ECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 34455 9999999999999 999999999999999999986
No 103
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.62 E-value=3.2e-08 Score=81.06 Aligned_cols=119 Identities=13% Similarity=0.152 Sum_probs=64.2
Q ss_pred eecCccEEEEEecCCChHHHHHHHHHhcCCC--CeEEEEecccCCcccc-------cc--eeEecCCCchhhhhhhhcCc
Q psy7718 16 ELQPVPVTIITGYLGAGKTTLLNYILTEQHD--KKIAVILNEFGEGSAM-------EK--SVSVGDNGNLYEEWLELKNG 84 (184)
Q Consensus 16 ~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~--~~~~vi~~~~~~~~~~-------~~--~~~~~~~~~l~~~~~~l~~g 84 (184)
...++++++|+|+|||||||+++.|++...+ +++.+...+....... .+ ...+.|...+.+..+..
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~--- 201 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAY--- 201 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHH---
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHH---
Confidence 3467899999999999999999999997543 4444444443221100 00 01223332222222211
Q ss_pred ceecccccchHHHHHHHHHHcCCCCEEEEccCCCCCCh-hHHHHhhhccccCCceEeCcEEEEEcCCCcc
Q psy7718 85 CLCCSVKDNGVKAIENLMLKRGKFDYILLETTGLADPG-PIAKVFWLDKELGSDIYLDGIVTVVDCKHTI 153 (184)
Q Consensus 85 ci~~~~~~~~~~~l~~ll~~~~~~d~iiiE~tg~~dp~-~i~~~l~~~~~~~~~~~l~~vi~vvDa~~~~ 153 (184)
..+.... ....|++++++.|..+-. .+.+-+.. +.+.+..+..+.++|+.+-+
T Consensus 202 -----------e~l~~~~--~~~~d~vliDtaG~~~~~~~l~~eL~~---i~ral~~de~llvLDa~t~~ 255 (328)
T 3e70_C 202 -----------DAIQHAK--ARGIDVVLIDTAGRSETNRNLMDEMKK---IARVTKPNLVIFVGDALAGN 255 (328)
T ss_dssp -----------HHHHHHH--HHTCSEEEEEECCSCCTTTCHHHHHHH---HHHHHCCSEEEEEEEGGGTT
T ss_pred -----------HHHHHHH--hccchhhHHhhccchhHHHHHHHHHHH---HHHHhcCCCCEEEEecHHHH
Confidence 1222211 236889999998886522 22222211 12223356678899987643
No 104
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.61 E-value=1.8e-08 Score=76.25 Aligned_cols=39 Identities=26% Similarity=0.260 Sum_probs=24.4
Q ss_pred CCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 6 ~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
....+++|||++.++++++|+|++||||||+.+.|.+..
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 356999999999999999999999999999999998754
No 105
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.61 E-value=3.3e-10 Score=87.19 Aligned_cols=40 Identities=20% Similarity=0.140 Sum_probs=32.9
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEE
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAV 51 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~v 51 (184)
+.+|+++ .+|++++|+|+||||||||++.|++. +|.+|.|
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I 52 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQV 52 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSC
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCee
Confidence 3467775 78999999999999999999999998 6654443
No 106
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.60 E-value=6.3e-09 Score=84.39 Aligned_cols=46 Identities=17% Similarity=0.154 Sum_probs=37.0
Q ss_pred CCCcccccee-------------------cCccEEEEEecCCChHHHHHHHHHhcCC--CCeEEEEe
Q psy7718 8 EVPDLVPAEL-------------------QPVPVTIITGYLGAGKTTLLNYILTEQH--DKKIAVIL 53 (184)
Q Consensus 8 ~~l~~v~l~v-------------------~~~~vi~i~G~~GsGKTTll~~L~~~~~--~~~~~vi~ 53 (184)
+++++++|.+ .++.+++|+|+||||||||++.|.+... +..+.|..
T Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~v 115 (308)
T 1sq5_A 49 PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVEL 115 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEE
Confidence 4567788877 7889999999999999999999999654 54444444
No 107
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.54 E-value=3.2e-08 Score=81.69 Aligned_cols=112 Identities=14% Similarity=0.134 Sum_probs=62.8
Q ss_pred CCccc-cceecCccEEEEEecCCChHHHHHHHHHhcC--CCCe----EE-EEecccCCcccccceeEecCCCchhhhhhh
Q psy7718 9 VPDLV-PAELQPVPVTIITGYLGAGKTTLLNYILTEQ--HDKK----IA-VILNEFGEGSAMEKSVSVGDNGNLYEEWLE 80 (184)
Q Consensus 9 ~l~~v-~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~--~~~~----~~-vi~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 80 (184)
.||.+ .+.+++|.++.|.|+||||||||++.+++.. ++.. +. +..+...... ..+...+.+...++.. ..
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~-~~~i~~i~q~~~~~~~-~v 196 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR-PERIREIAQNRGLDPD-EV 196 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCC-HHHHHHHHHTTTCCHH-HH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCC-HHHHHHHHHHcCCCHH-HH
Confidence 35555 6789999999999999999999999999865 3222 23 3333222100 0111122333322222 34
Q ss_pred hcCcceecccc-c---chHHHHHHHHHHc----CCCCEEEE-ccCCCCCCh
Q psy7718 81 LKNGCLCCSVK-D---NGVKAIENLMLKR----GKFDYILL-ETTGLADPG 122 (184)
Q Consensus 81 l~~gci~~~~~-~---~~~~~l~~ll~~~----~~~d~iii-E~tg~~dp~ 122 (184)
++|..+..... + .....+..++... .+|+++++ |++...+|.
T Consensus 197 ~~ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~ 247 (349)
T 1pzn_A 197 LKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSE 247 (349)
T ss_dssp GGGEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHH
T ss_pred hhCEEEEecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhh
Confidence 45544332211 1 1122333444322 58999999 999998774
No 108
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.52 E-value=2.1e-08 Score=86.71 Aligned_cols=49 Identities=22% Similarity=0.179 Sum_probs=41.7
Q ss_pred CCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEeccc
Q psy7718 8 EVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEF 56 (184)
Q Consensus 8 ~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~ 56 (184)
.++++++|.+.++..++|+|++|||||||++.|++..++.++.|...+.
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~ 296 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDT 296 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESS
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCc
Confidence 3678899999999999999999999999999999988776666655443
No 109
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.49 E-value=1.5e-07 Score=83.05 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=24.9
Q ss_pred ccEEEEEecCCChHHHHHHHHHhcCCC-CeEEEEec
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTEQHD-KKIAVILN 54 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~~~~-~~~~vi~~ 54 (184)
.|.++|+|+||||||||++.|+|...| .+|.|..+
T Consensus 45 lp~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~ 80 (608)
T 3szr_A 45 LPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRC 80 (608)
T ss_dssp CCCEECCCCTTSCHHHHHHHHHSCC-------CCCS
T ss_pred CCeEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEc
Confidence 356999999999999999999998766 56665443
No 110
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.47 E-value=6e-08 Score=77.32 Aligned_cols=66 Identities=18% Similarity=0.184 Sum_probs=33.2
Q ss_pred EEEEEecCCChHHHHHHHHHhcCCCCeEEEEecccCC--cccccceeEecCCCchhhhhhhhcCccee
Q psy7718 22 VTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGE--GSAMEKSVSVGDNGNLYEEWLELKNGCLC 87 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~~~--~~~~~~~~~~~~~~~l~~~~~~l~~gci~ 87 (184)
.++|+|+||||||||+|.|.+...+.++.+..++..- .........++|...++..++..++..+.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g 71 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFG 71 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhh
Confidence 5799999999999999999998777777766543211 11112233556665555556666655443
No 111
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.47 E-value=1.3e-07 Score=73.18 Aligned_cols=47 Identities=17% Similarity=0.141 Sum_probs=34.1
Q ss_pred CCCCccccc-eecCccEEEEEecCCChHHHHHHHHH--hc-CCCCeEEEEe
Q psy7718 7 SEVPDLVPA-ELQPVPVTIITGYLGAGKTTLLNYIL--TE-QHDKKIAVIL 53 (184)
Q Consensus 7 ~~~l~~v~l-~v~~~~vi~i~G~~GsGKTTll~~L~--~~-~~~~~~~vi~ 53 (184)
.+.||.+-- .+++|++++|+|+||||||||++.|+ +. ..+..+.++.
T Consensus 16 ~~~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 16 IPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp CTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CHhHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 345555521 68899999999999999999999999 54 3444444443
No 112
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.46 E-value=1.6e-07 Score=70.12 Aligned_cols=28 Identities=18% Similarity=0.280 Sum_probs=25.4
Q ss_pred eecCccEEEEEecCCChHHHHHHHHHhc
Q psy7718 16 ELQPVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 16 ~v~~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.+.+|++++|+|+|||||||+++.|++.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3678899999999999999999999987
No 113
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.45 E-value=9.3e-07 Score=71.24 Aligned_cols=44 Identities=16% Similarity=0.179 Sum_probs=35.1
Q ss_pred ccccceecCccEEEEEecCCChHHHHHHHHHhcC--CCCeEEEEeccc
Q psy7718 11 DLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQ--HDKKIAVILNEF 56 (184)
Q Consensus 11 ~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~--~~~~~~vi~~~~ 56 (184)
++++|+ ++++++++|++|+||||++..|++.. .+.++.++-.+.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~ 136 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc
Confidence 678888 78999999999999999999999864 345565554443
No 114
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.43 E-value=6.3e-08 Score=73.86 Aligned_cols=113 Identities=22% Similarity=0.230 Sum_probs=66.5
Q ss_pred cCccEEEEEecCCChHHHHHHHHHhcC-CCCeEEEEecccCCcccccceeEecCCCchhhhhhhhcCcceecccccchHH
Q psy7718 18 QPVPVTIITGYLGAGKTTLLNYILTEQ-HDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLELKNGCLCCSVKDNGVK 96 (184)
Q Consensus 18 ~~~~vi~i~G~~GsGKTTll~~L~~~~-~~~~~~vi~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~gci~~~~~~~~~~ 96 (184)
.+.++++|+|+.|+|||||++.|+... ...+..++.++++.. .+... +...+ ..+..+.++|+||....
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~-~d~~~--~~~~~---~~~~~~~~~~~~~~~~~---- 97 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSK-ADYER--VRRFG---IKAEAISTGKECHLDAH---- 97 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCH-HHHHH--HHTTT---CEEEECCCTTCSSCCHH----
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCc-hhHHH--HHhCC---CcEEEecCCceeecccH----
Confidence 356799999999999999999998752 335677777776531 11110 11111 01234567777653321
Q ss_pred HHHHHHHHcCCCCEEEEccCCC-CCChhHHHHhhhccccCCceEeCcEEEEEcCCCc
Q psy7718 97 AIENLMLKRGKFDYILLETTGL-ADPGPIAKVFWLDKELGSDIYLDGIVTVVDCKHT 152 (184)
Q Consensus 97 ~l~~ll~~~~~~d~iiiE~tg~-~dp~~i~~~l~~~~~~~~~~~l~~vi~vvDa~~~ 152 (184)
.+.+.+.....+|++++|++|. ..|... .. .-..++.|+|+...
T Consensus 98 ~~~~~~~~~~~~d~iiidt~G~~~~~~~~--------~~----~~~~~i~vvd~~~~ 142 (221)
T 2wsm_A 98 MIYHRLKKFSDCDLLLIENVGNLICPVDF--------DL----GENYRVVMVSVTEG 142 (221)
T ss_dssp HHHTTGGGGTTCSEEEEEEEEBSSGGGGC--------CC----SCSEEEEEEEGGGC
T ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCCchh--------cc----ccCcEEEEEeCCCc
Confidence 2222221345799999999995 333211 11 12347889998654
No 115
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.43 E-value=9.7e-07 Score=72.00 Aligned_cols=47 Identities=17% Similarity=0.170 Sum_probs=37.9
Q ss_pred CccccceecCccEEEEEecCCChHHHHHHHHHhcC--CCCeEEEEeccc
Q psy7718 10 PDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQ--HDKKIAVILNEF 56 (184)
Q Consensus 10 l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~--~~~~~~vi~~~~ 56 (184)
+++++|+..++.+++++|++|+||||++..|++.. .+.++.++-.|.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 47899999999999999999999999999999864 455666554443
No 116
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.41 E-value=2.5e-08 Score=78.75 Aligned_cols=40 Identities=20% Similarity=0.354 Sum_probs=35.5
Q ss_pred CCCCCCccccceecC---ccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 5 SDSEVPDLVPAELQP---VPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~---~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
++..+|+++||++.+ +++++|+|++||||||+.+.|.+..
T Consensus 30 ~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 30 EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp --CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 456799999999999 9999999999999999999998753
No 117
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.40 E-value=5.6e-07 Score=74.24 Aligned_cols=119 Identities=18% Similarity=0.165 Sum_probs=65.3
Q ss_pred cCccEEEEEecCCChHHHHHHHHHhc--CCCCeEEEEecccCCcccc----cceeEec---CCCchhhhhhhhcCcceec
Q psy7718 18 QPVPVTIITGYLGAGKTTLLNYILTE--QHDKKIAVILNEFGEGSAM----EKSVSVG---DNGNLYEEWLELKNGCLCC 88 (184)
Q Consensus 18 ~~~~vi~i~G~~GsGKTTll~~L~~~--~~~~~~~vi~~~~~~~~~~----~~~~~~~---~~~~l~~~~~~l~~gci~~ 88 (184)
.+.++++|+|+.|+|||||++.|+.. ..+.++.++..+....... .+...+. ..+. ..+.....+|.|+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~--~~i~~~~~~~~~~ 154 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPN--AYIRPSPTSGTLG 154 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTT--EEEECCC--CCHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCC--eeEEECCCCcccc
Confidence 45679999999999999999999875 3567788887775442110 0100000 0000 0122334445555
Q ss_pred ccccchHHHHHHHHHHcCCCCEEEEccCCCCCChhHHHHhhhccccCCceEeCcEEEEEcCCC
Q psy7718 89 SVKDNGVKAIENLMLKRGKFDYILLETTGLADPGPIAKVFWLDKELGSDIYLDGIVTVVDCKH 151 (184)
Q Consensus 89 ~~~~~~~~~l~~ll~~~~~~d~iiiE~tg~~dp~~i~~~l~~~~~~~~~~~l~~vi~vvDa~~ 151 (184)
.........+ ..+. ...++++++++.|+..+.... +. ..+.++.|+|+..
T Consensus 155 ~~~~~t~d~i-~~~~-~~~~~~iiiDTpGi~~~~~~~--~~---------~aD~vl~V~d~~~ 204 (355)
T 3p32_A 155 GVTRATRETV-VLLE-AAGFDVILIETVGVGQSEVAV--AN---------MVDTFVLLTLART 204 (355)
T ss_dssp HHHHHHHHHH-HHHH-HTTCCEEEEEECSCSSHHHHH--HT---------TCSEEEEEEESST
T ss_pred chhHHHHHHH-HHHh-hCCCCEEEEeCCCCCcHHHHH--HH---------hCCEEEEEECCCC
Confidence 4433334445 3333 467999999999987643221 11 2345778888654
No 118
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.39 E-value=1.2e-07 Score=71.99 Aligned_cols=29 Identities=31% Similarity=0.509 Sum_probs=23.0
Q ss_pred ecCccEEEEEecCCChHHHHHHHHHhcCC
Q psy7718 17 LQPVPVTIITGYLGAGKTTLLNYILTEQH 45 (184)
Q Consensus 17 v~~~~vi~i~G~~GsGKTTll~~L~~~~~ 45 (184)
|+++++++|+||||||||||++.|++...
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45788999999999999999999998643
No 119
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.38 E-value=1.9e-07 Score=70.89 Aligned_cols=36 Identities=25% Similarity=0.241 Sum_probs=28.0
Q ss_pred ecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEe
Q psy7718 17 LQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVIL 53 (184)
Q Consensus 17 v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~ 53 (184)
.+++.+++|+|+|||||||+++.|.+...+ ++.++.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-~i~~v~ 38 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE-RVALLP 38 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG-GEEEEE
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC-CeEEEe
Confidence 457889999999999999999999987543 345544
No 120
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.37 E-value=2.8e-07 Score=69.38 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=27.0
Q ss_pred ceecCccEEEEEecCCChHHHHHHHHHhcCCCC
Q psy7718 15 AELQPVPVTIITGYLGAGKTTLLNYILTEQHDK 47 (184)
Q Consensus 15 l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~ 47 (184)
+++.++.+++|+|++||||||+++.|.+...+.
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 457889999999999999999999999876443
No 121
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.36 E-value=1e-06 Score=71.03 Aligned_cols=39 Identities=33% Similarity=0.362 Sum_probs=30.8
Q ss_pred cCccEEEEEecCCChHHHHHHHHHhcC---CCCeEEEEeccc
Q psy7718 18 QPVPVTIITGYLGAGKTTLLNYILTEQ---HDKKIAVILNEF 56 (184)
Q Consensus 18 ~~~~vi~i~G~~GsGKTTll~~L~~~~---~~~~~~vi~~~~ 56 (184)
.++.+++++|++|+||||+++.|++.. .+.++.++..+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 467899999999999999999999853 344666665444
No 122
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.36 E-value=9.4e-07 Score=74.72 Aligned_cols=127 Identities=17% Similarity=0.098 Sum_probs=68.1
Q ss_pred ccccceecCccEEEEEecCCChHHHHHHHHHhcC--CCCeEEEEecccCCcccccceeEecCCCchhhhhhhhcCcceec
Q psy7718 11 DLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQ--HDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLELKNGCLCC 88 (184)
Q Consensus 11 ~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~--~~~~~~vi~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~gci~~ 88 (184)
++++|+ ++.+++++|++|+||||++..|++.. .+.++.++-.|........ | ...+....|.-+..
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~------q----L~~~~~~~gv~v~~ 158 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE------Q----LRLLGEKVGVPVLE 158 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHH------H----HHHHHHHHTCCEEE
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHH------H----HHHhcccCCccEEe
Confidence 678887 78899999999999999999999864 4556666655443221100 0 00011111111111
Q ss_pred c-cccchHHHHHHHHHH--cCCCCEEEEccCCCCCCh-hHHHHhhhccccCCceEeCcEEEEEcCCCc
Q psy7718 89 S-VKDNGVKAIENLMLK--RGKFDYILLETTGLADPG-PIAKVFWLDKELGSDIYLDGIVTVVDCKHT 152 (184)
Q Consensus 89 ~-~~~~~~~~l~~ll~~--~~~~d~iiiE~tg~~dp~-~i~~~l~~~~~~~~~~~l~~vi~vvDa~~~ 152 (184)
. ...+...-+.+.+.. ...+|+||+.+.|..+.. .+..-+. .+.+.+..+.++.|+|+.+.
T Consensus 159 ~~~~~~p~~i~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~---~i~~~~~pd~vlLVvDa~tg 223 (425)
T 2ffh_A 159 VMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELA---RLKEVLGPDEVLLVLDAMTG 223 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHCCSEEEEEEEGGGT
T ss_pred cCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHH---HhhhccCCceEEEEEeccch
Confidence 1 111211111233322 268999999998876532 2222111 11111235567889998654
No 123
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.34 E-value=2e-07 Score=70.95 Aligned_cols=29 Identities=24% Similarity=0.304 Sum_probs=26.1
Q ss_pred ecCccEEEEEecCCChHHHHHHHHHhcCC
Q psy7718 17 LQPVPVTIITGYLGAGKTTLLNYILTEQH 45 (184)
Q Consensus 17 v~~~~vi~i~G~~GsGKTTll~~L~~~~~ 45 (184)
.+++++++|+|+||||||||++.|.+...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46789999999999999999999998754
No 124
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.34 E-value=1.8e-07 Score=77.39 Aligned_cols=40 Identities=23% Similarity=0.325 Sum_probs=36.0
Q ss_pred CCccccceecC--ccEEEEEecCCChHHHHHHHHHhcCCCCe
Q psy7718 9 VPDLVPAELQP--VPVTIITGYLGAGKTTLLNYILTEQHDKK 48 (184)
Q Consensus 9 ~l~~v~l~v~~--~~vi~i~G~~GsGKTTll~~L~~~~~~~~ 48 (184)
+.+.|++++.+ ++.++|+|+||||||||++.|++...+..
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 35679999999 99999999999999999999999877755
No 125
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.34 E-value=8.5e-07 Score=75.29 Aligned_cols=122 Identities=16% Similarity=0.200 Sum_probs=65.3
Q ss_pred CccEEEEEecCCChHHHHHHHHHhc--CCCCeEEEEecccCCcccccceeEecCCCchhhhhhhhcCc-ceecccccchH
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTE--QHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLELKNG-CLCCSVKDNGV 95 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~--~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g-ci~~~~~~~~~ 95 (184)
++.++.++|++|+||||++..|+.. ..+.++.++..|........ | ...+....+. ++......+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~e------q----L~~~~~~~gvpv~~~~~~~dp~ 168 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYH------Q----LRQLLDRYHIEVFGNPQEKDAI 168 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHH------H----HHHHHGGGTCEEECCTTCCCHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHH------H----HHHHHHhcCCcEEecCCCCCHH
Confidence 3579999999999999999999874 34567777765543221100 0 0011111111 11111112322
Q ss_pred HHHHHHHH--HcCCCCEEEEccCCCCCCh-hHHHHhhhccccCCceEeCcEEEEEcCCCcc
Q psy7718 96 KAIENLML--KRGKFDYILLETTGLADPG-PIAKVFWLDKELGSDIYLDGIVTVVDCKHTI 153 (184)
Q Consensus 96 ~~l~~ll~--~~~~~d~iiiE~tg~~dp~-~i~~~l~~~~~~~~~~~l~~vi~vvDa~~~~ 153 (184)
..+.+.+. +..++|+||+++.|..+.. .+...+.. +......+.++.|+||.+.+
T Consensus 169 ~i~~~al~~a~~~~~DvVIIDTaGrl~~d~~lm~el~~---i~~~~~pd~vlLVvDA~~gq 226 (443)
T 3dm5_A 169 KLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQ---ISNVIHPHEVILVIDGTIGQ 226 (443)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHH---HHHHHCCSEEEEEEEGGGGG
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCcccchHHHHHHHHH---HHHhhcCceEEEEEeCCCch
Confidence 22222222 2356999999999987643 23222211 11112346689999998643
No 126
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.34 E-value=3.6e-07 Score=69.40 Aligned_cols=46 Identities=26% Similarity=0.212 Sum_probs=35.1
Q ss_pred CCCCccccc-eecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEe
Q psy7718 7 SEVPDLVPA-ELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVIL 53 (184)
Q Consensus 7 ~~~l~~v~l-~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~ 53 (184)
.+.||.+.. -+.+|++++|+|++|||||||++.+++ ..+.++.++.
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~~~~~v~~i~ 52 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-LSGKKVAYVD 52 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-HHCSEEEEEE
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-HcCCcEEEEE
Confidence 445666665 688999999999999999999999998 3334444443
No 127
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.32 E-value=8.2e-07 Score=69.40 Aligned_cols=128 Identities=22% Similarity=0.207 Sum_probs=69.8
Q ss_pred cCccEEEEEecCCChHHHHHHHHHhc-CCCCeEEEEecccCCcccccc-eeEecCCCchhhhh---hhhcCcceeccc--
Q psy7718 18 QPVPVTIITGYLGAGKTTLLNYILTE-QHDKKIAVILNEFGEGSAMEK-SVSVGDNGNLYEEW---LELKNGCLCCSV-- 90 (184)
Q Consensus 18 ~~~~vi~i~G~~GsGKTTll~~L~~~-~~~~~~~vi~~~~~~~~~~~~-~~~~~~~~~l~~~~---~~l~~gci~~~~-- 90 (184)
.+..+++++|+.|+||||+++.|+.. ..+.++.++-.|.+....... ...+..-.. .... ....|+|+||..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 90 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVT-VEEIMREGYGPNGAIVESYDR 90 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCC-HHHHHTTTCCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhccc-HHHHhhccCCCCCcEEecHHH
Confidence 45678999999999999999999853 245678888777654322100 000000000 1111 113466666532
Q ss_pred ccchHHHHHHHHHH-cCCCCEEEEccCCCCCChhHHH---HhhhccccCCceEeCcEEEEEcCCCc
Q psy7718 91 KDNGVKAIENLMLK-RGKFDYILLETTGLADPGPIAK---VFWLDKELGSDIYLDGIVTVVDCKHT 152 (184)
Q Consensus 91 ~~~~~~~l~~ll~~-~~~~d~iiiE~tg~~dp~~i~~---~l~~~~~~~~~~~l~~vi~vvDa~~~ 152 (184)
.......+.+.+.. ...+|++++++.|..++..... .+. ..+ -. .-+|.++|+...
T Consensus 91 ~~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~~l~~~~~--~~~---~~-~~iv~vvD~~~~ 150 (262)
T 1yrb_A 91 LMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLM--ENL---PY-PLVVYISDPEIL 150 (262)
T ss_dssp HHTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHH--HTS---SS-CEEEEEECGGGC
T ss_pred HhhhHHHHHHHHHHHhhcCCEEEEeCCCccchhhhhhhHHHHH--HHH---hh-ceEEeccchhhh
Confidence 11122333333322 1258999999999877654321 111 112 13 567889998643
No 128
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.32 E-value=1.6e-07 Score=70.34 Aligned_cols=26 Identities=35% Similarity=0.508 Sum_probs=23.5
Q ss_pred ccEEEEEecCCChHHHHHHHHHhcCC
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTEQH 45 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~~~ 45 (184)
+++++|+|||||||||++++|++..+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998764
No 129
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.29 E-value=1.2e-07 Score=80.12 Aligned_cols=43 Identities=23% Similarity=0.281 Sum_probs=31.8
Q ss_pred CCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEe
Q psy7718 9 VPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVIL 53 (184)
Q Consensus 9 ~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~ 53 (184)
+|+++ + ..++.+++|+|+||||||||++.|++...+.++.|+.
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~ 200 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILT 200 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEE
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEE
Confidence 34444 3 2678899999999999999999999976554443433
No 130
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.29 E-value=4.9e-07 Score=67.01 Aligned_cols=33 Identities=27% Similarity=0.248 Sum_probs=29.5
Q ss_pred ccccceecCccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 11 DLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 11 ~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
++++|.+.++ +++|+|+|||||||+++.|....
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence 6788888887 99999999999999999998653
No 131
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.28 E-value=6.4e-07 Score=68.40 Aligned_cols=92 Identities=23% Similarity=0.317 Sum_probs=55.1
Q ss_pred CccEEEEEecCCChHHHHHHHHHhc-CCCCeEEEEecccCCcccccceeEecCCCchhhhhhhhcCcceecccccchHHH
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTE-QHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLELKNGCLCCSVKDNGVKA 97 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~-~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~gci~~~~~~~~~~~ 97 (184)
+.++++|+|+.|+|||||++.++.. ....+..++.++++. ..+... +...+ .....+.++|.|+....+....
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~-~~d~~~--~~~~~---~~~~~~~~~~~~~l~~~~~~~~ 110 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIA-KFDAER--MEKHG---AKVVPLNTGKECHLDAHLVGHA 110 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTT-HHHHHH--HHTTT---CEEEEEECTTCSSCCHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCC-CccHHH--HHhcC---CcEEEecCCceEeccHHHHHHH
Confidence 4678999999999999999999975 334567777777752 111110 11111 1233455677765332222222
Q ss_pred HHHHHHHcCCCCEEEEccCCC
Q psy7718 98 IENLMLKRGKFDYILLETTGL 118 (184)
Q Consensus 98 l~~ll~~~~~~d~iiiE~tg~ 118 (184)
+..+ ....+|++++|++|.
T Consensus 111 ~~~l--~~~~~d~~~id~~g~ 129 (226)
T 2hf9_A 111 LEDL--NLDEIDLLFIENVGN 129 (226)
T ss_dssp HTTS--CGGGCSEEEEECCSC
T ss_pred HHHH--hcCCCCEEEEeCCCC
Confidence 2222 123679999999995
No 132
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.28 E-value=3.7e-07 Score=75.54 Aligned_cols=74 Identities=19% Similarity=0.164 Sum_probs=43.5
Q ss_pred CCccccceecCccEEEEEecCCChHHHHHHHHHhcCC-CCeEEEEec-ccCC-cccccceeEecCCCchhhhhhhhcC
Q psy7718 9 VPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQH-DKKIAVILN-EFGE-GSAMEKSVSVGDNGNLYEEWLELKN 83 (184)
Q Consensus 9 ~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~-~~~~~vi~~-~~~~-~~~~~~~~~~~~~~~l~~~~~~l~~ 83 (184)
-++++++.+ ++++++|+|+||+|||||+|.|++... +..+.|... +.+. .........+++.+.+++.....++
T Consensus 205 gl~~L~~~~-~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 205 GLKPLEEAL-TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREF 281 (358)
T ss_dssp THHHHHHHH-TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTC
T ss_pred CHHHHHHhc-CCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHh
Confidence 456676654 689999999999999999999999877 766666543 2111 0111223345565555554444443
No 133
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.27 E-value=2e-07 Score=70.56 Aligned_cols=38 Identities=29% Similarity=0.129 Sum_probs=32.5
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
-...+.+++..+++++++|+|++||||||+.+.|.+..
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44556677778899999999999999999999999864
No 134
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.27 E-value=2.2e-06 Score=69.46 Aligned_cols=44 Identities=20% Similarity=0.257 Sum_probs=34.4
Q ss_pred cccceecCccEEEEEecCCChHHHHHHHHHhcC--CCCeEEEEecc
Q psy7718 12 LVPAELQPVPVTIITGYLGAGKTTLLNYILTEQ--HDKKIAVILNE 55 (184)
Q Consensus 12 ~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~--~~~~~~vi~~~ 55 (184)
.++|+..++.+++|+|++||||||+++.|++.. .+.++.++..|
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D 141 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAAD 141 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccc
Confidence 456667788999999999999999999999864 34556555444
No 135
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.26 E-value=2.6e-07 Score=69.68 Aligned_cols=35 Identities=17% Similarity=0.099 Sum_probs=30.9
Q ss_pred CCCccccceecCccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 8 EVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 8 ~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
.++++ |.+.++..++|+|++|||||||++.|++..
T Consensus 16 ~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 16 PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 56777 889999999999999999999999999864
No 136
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.26 E-value=5.4e-07 Score=67.09 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=24.5
Q ss_pred CccEEEEEecCCChHHHHHHHHHhcCC
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTEQH 45 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~~~ 45 (184)
++++++|+||||||||||++.|.+...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 578999999999999999999998754
No 137
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.24 E-value=4.3e-07 Score=73.35 Aligned_cols=41 Identities=22% Similarity=0.314 Sum_probs=22.1
Q ss_pred CCCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhc-CCCCeE
Q psy7718 3 SDSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTE-QHDKKI 49 (184)
Q Consensus 3 ~~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~-~~~~~~ 49 (184)
+++++.++++++|.+ +|+|+||+|||||++.|.+. ..+.++
T Consensus 7 ~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g 48 (301)
T 2qnr_A 7 QVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV 48 (301)
T ss_dssp -----------CEEE------EEEEETTSSHHHHHHHHHC--------
T ss_pred eECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC
Confidence 456678999999988 99999999999999999875 444444
No 138
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.22 E-value=8.2e-07 Score=67.67 Aligned_cols=29 Identities=17% Similarity=0.340 Sum_probs=26.2
Q ss_pred cCccEEEEEecCCChHHHHHHHHHhcCCC
Q psy7718 18 QPVPVTIITGYLGAGKTTLLNYILTEQHD 46 (184)
Q Consensus 18 ~~~~vi~i~G~~GsGKTTll~~L~~~~~~ 46 (184)
+++++++|+||+||||||+++.|++...+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 57899999999999999999999987654
No 139
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.21 E-value=3.8e-07 Score=83.93 Aligned_cols=34 Identities=32% Similarity=0.355 Sum_probs=31.8
Q ss_pred CCCccccceecCccEEEEEecCCChHHHHHHHHH
Q psy7718 8 EVPDLVPAELQPVPVTIITGYLGAGKTTLLNYIL 41 (184)
Q Consensus 8 ~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~ 41 (184)
.+|++|||++++|++++|+|+||||||||++.|+
T Consensus 656 ~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 656 HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 3799999999999999999999999999999864
No 140
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.21 E-value=3.3e-07 Score=74.43 Aligned_cols=39 Identities=26% Similarity=0.230 Sum_probs=26.5
Q ss_pred ceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEe
Q psy7718 15 AELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVIL 53 (184)
Q Consensus 15 l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~ 53 (184)
+++.++++++|+|+||+|||||+|.|++...+..+.|..
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~ 206 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 206 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceee
Confidence 667789999999999999999999999987666665543
No 141
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.20 E-value=9.5e-07 Score=74.57 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=31.5
Q ss_pred CCCCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCC
Q psy7718 3 SDSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQH 45 (184)
Q Consensus 3 ~~~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~ 45 (184)
++.++.++++++|++ +|+|+||+|||||++.|++...
T Consensus 20 ~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 20 QVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp CTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCC
T ss_pred eECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCC
Confidence 456678999999987 9999999999999999998643
No 142
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.20 E-value=7.9e-07 Score=67.18 Aligned_cols=30 Identities=27% Similarity=0.412 Sum_probs=24.2
Q ss_pred ceecCccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 15 AELQPVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 15 l~v~~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
+..+++++++|+|+|||||||+++.|.+..
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 445678999999999999999999998765
No 143
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.19 E-value=6e-07 Score=72.47 Aligned_cols=39 Identities=26% Similarity=0.267 Sum_probs=29.6
Q ss_pred ceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEe
Q psy7718 15 AELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVIL 53 (184)
Q Consensus 15 l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~ 53 (184)
|++..+++++|+|+||||||||+|.|++...+..+.|..
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~ 202 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 202 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceec
Confidence 445678999999999999999999999988887777665
No 144
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.17 E-value=6.7e-07 Score=71.28 Aligned_cols=38 Identities=18% Similarity=0.155 Sum_probs=33.8
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCC
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHD 46 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~ 46 (184)
..++++++|.+++| ++|.||+|+|||||++.|++...+
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~ 70 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL 70 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC
Confidence 34678899999998 999999999999999999997655
No 145
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.17 E-value=3.7e-07 Score=83.79 Aligned_cols=34 Identities=29% Similarity=0.387 Sum_probs=31.8
Q ss_pred CCCccccceecCccEEEEEecCCChHHHHHHHHH
Q psy7718 8 EVPDLVPAELQPVPVTIITGYLGAGKTTLLNYIL 41 (184)
Q Consensus 8 ~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~ 41 (184)
..|++|||++++|++++|+|+||||||||++.++
T Consensus 638 ~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 638 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 4699999999999999999999999999999864
No 146
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.15 E-value=4.8e-06 Score=67.14 Aligned_cols=128 Identities=16% Similarity=0.143 Sum_probs=68.0
Q ss_pred cc-ccceecCccEEEEEecCCChHHHHHHHHHhcC--CCCeEEEEecccCCcccccceeEecCCCchhhhhhhhcCccee
Q psy7718 11 DL-VPAELQPVPVTIITGYLGAGKTTLLNYILTEQ--HDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLELKNGCLC 87 (184)
Q Consensus 11 ~~-v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~--~~~~~~vi~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~gci~ 87 (184)
++ ++|+.+ +.+++++|++|+||||++..|++.. .+.++.++-.+........ | ...+....+.-+.
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~------q----l~~~~~~~~v~v~ 157 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALE------Q----LQQLGQQIGVPVY 157 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHH------H----HHHHHHHHTCCEE
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHH------H----HHHHhccCCeEEE
Confidence 45 788876 8899999999999999999999753 4556666654433211100 0 0001111111111
Q ss_pred cc-cccchHHHHHHHHHH--cCCCCEEEEccCCCCC--Ch-hHHHHhhhccccCCceEeCcEEEEEcCCCc
Q psy7718 88 CS-VKDNGVKAIENLMLK--RGKFDYILLETTGLAD--PG-PIAKVFWLDKELGSDIYLDGIVTVVDCKHT 152 (184)
Q Consensus 88 ~~-~~~~~~~~l~~ll~~--~~~~d~iiiE~tg~~d--p~-~i~~~l~~~~~~~~~~~l~~vi~vvDa~~~ 152 (184)
.. ...+....+.+.+.. ...+|+|++-+.|..+ .. .+.+.+. .+......+.++.|+|+.+.
T Consensus 158 ~~~~~~~p~~~~~~~l~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~---~i~~~~~~d~vllVvda~~g 225 (297)
T 1j8m_F 158 GEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMK---NIYEAIKPDEVTLVIDASIG 225 (297)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHH---HHHHHHCCSEEEEEEEGGGG
T ss_pred ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcccccHHHHHHHHH---HHHHHhcCCEEEEEeeCCch
Confidence 11 011222222233322 2689999998888876 32 2322111 00111235678889998653
No 147
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.15 E-value=9.1e-06 Score=68.82 Aligned_cols=120 Identities=15% Similarity=0.171 Sum_probs=62.9
Q ss_pred CccEEEEEecCCChHHHHHHHHHhcC--CCCeEEEEecccCCcccccceeEecCCCchhhhhhhhcCcceeccc--ccch
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTEQ--HDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLELKNGCLCCSV--KDNG 94 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~~--~~~~~~vi~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~gci~~~~--~~~~ 94 (184)
++.+++++|++||||||++..|+... .+.++.++..+........ | ...+... .+.-+... ..+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~e------q----L~~~~~~-~gv~~~~~~~~~dp 164 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYD------Q----LLQLGNQ-IGVQVYGEPNNQNP 164 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHH------H----HHHHHHT-TTCCEECCTTCSCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHH------H----HHHHHHh-cCCceeeccccCCH
Confidence 46799999999999999999998753 4566766655543211000 0 0000011 11111111 1122
Q ss_pred HHHHHHHHHH--cCCCCEEEEccCCCC----CChhHHHHhhhccccCCceEeCcEEEEEcCCCcc
Q psy7718 95 VKAIENLMLK--RGKFDYILLETTGLA----DPGPIAKVFWLDKELGSDIYLDGIVTVVDCKHTI 153 (184)
Q Consensus 95 ~~~l~~ll~~--~~~~d~iiiE~tg~~----dp~~i~~~l~~~~~~~~~~~l~~vi~vvDa~~~~ 153 (184)
..-..+.+.. ...+|++++.+.|.. ++.-+.++... .+...-+.++.|+|+.+.+
T Consensus 165 ~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i----~~~~~pd~vlLVlDa~~gq 225 (433)
T 3kl4_A 165 IEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEM----YDVLKPDDVILVIDASIGQ 225 (433)
T ss_dssp HHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHH----HHHHCCSEEEEEEEGGGGG
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHH----HHhhCCcceEEEEeCccch
Confidence 2212222222 248999999877863 44333332211 1112335789999998754
No 148
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.13 E-value=3.4e-07 Score=83.31 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=31.5
Q ss_pred CCccccceecCccEEEEEecCCChHHHHHHH-HHh
Q psy7718 9 VPDLVPAELQPVPVTIITGYLGAGKTTLLNY-ILT 42 (184)
Q Consensus 9 ~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~-L~~ 42 (184)
.|++|||++++|++++|+|+||||||||++. |.+
T Consensus 512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g 546 (842)
T 2vf7_A 512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVD 546 (842)
T ss_dssp TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHH
T ss_pred ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHH
Confidence 6999999999999999999999999999996 543
No 149
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.12 E-value=1.1e-06 Score=66.36 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=23.4
Q ss_pred ccEEEEEecCCChHHHHHHHHHhcCC
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTEQH 45 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~~~ 45 (184)
|++++|+|+||||||||++.|++..+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc
Confidence 57899999999999999999998654
No 150
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.11 E-value=6.7e-07 Score=74.55 Aligned_cols=38 Identities=18% Similarity=0.172 Sum_probs=34.4
Q ss_pred CCCccccceecCccEEEEEecCCChHHHHHHHHHhcCC
Q psy7718 8 EVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQH 45 (184)
Q Consensus 8 ~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~ 45 (184)
.+++++++.++++++++|.|++|||||||++.|++...
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 46788899999999999999999999999999998643
No 151
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.10 E-value=8.2e-07 Score=66.09 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=27.4
Q ss_pred ccEEEEEecCCChHHHHHHHHHhcCCCC---eEEEEecc
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTEQHDK---KIAVILNE 55 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~~~~~---~~~vi~~~ 55 (184)
.++++|+|++|||||||++.|++...+. .+.|..++
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg 40 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHA 40 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcC
Confidence 4789999999999999999999976544 45555443
No 152
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.09 E-value=1.8e-06 Score=71.44 Aligned_cols=35 Identities=31% Similarity=0.161 Sum_probs=32.1
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHh
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILT 42 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~ 42 (184)
...+++++|++.++ +++|+|+|||||||+++.|..
T Consensus 14 ~~~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 14 YRNLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp BTTCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ccceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 45678999999999 999999999999999999985
No 153
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.08 E-value=1.6e-06 Score=64.65 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=22.0
Q ss_pred ccEEEEEecCCChHHHHHHHHHhc
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
+++++|+|+|||||||+++.|.+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc
Confidence 578999999999999999999873
No 154
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.08 E-value=1.4e-06 Score=64.53 Aligned_cols=31 Identities=23% Similarity=0.105 Sum_probs=27.3
Q ss_pred cceecCccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 14 PAELQPVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 14 ~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
+|.+.+++.++|.|++|+|||||++.+++..
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4566778999999999999999999999864
No 155
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.08 E-value=1.6e-06 Score=63.44 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=24.0
Q ss_pred cCccEEEEEecCCChHHHHHHHHHhcCC
Q psy7718 18 QPVPVTIITGYLGAGKTTLLNYILTEQH 45 (184)
Q Consensus 18 ~~~~vi~i~G~~GsGKTTll~~L~~~~~ 45 (184)
..+.+++|+|++||||||+.+.|.+...
T Consensus 2 ~~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 2 AEKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp -CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4567899999999999999999998654
No 156
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.06 E-value=1.6e-05 Score=69.22 Aligned_cols=116 Identities=16% Similarity=0.320 Sum_probs=60.0
Q ss_pred cCccEEEEEecCCChHHHHHHHHHhcCCC----------Ce-EEEEecccCCcccccceeEecCCCchhhhh----hhhc
Q psy7718 18 QPVPVTIITGYLGAGKTTLLNYILTEQHD----------KK-IAVILNEFGEGSAMEKSVSVGDNGNLYEEW----LELK 82 (184)
Q Consensus 18 ~~~~vi~i~G~~GsGKTTll~~L~~~~~~----------~~-~~vi~~~~~~~~~~~~~~~~~~~~~l~~~~----~~l~ 82 (184)
...+.++|+|..|+|||||++.|++.... .+ ..+..++.+..... ..+..... .-+..+ ..+.
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g-~~l~~~~~-~~~~~L~~~g~~~~ 140 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPG-NALVVDPE-KPFRKLNPFGNTFL 140 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECC-C-------------------CCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCC-ceeeecCc-ccHHHHhhhccccc
Confidence 35689999999999999999999985311 11 23333332211100 00000000 000111 1234
Q ss_pred CcceecccccchHHHHHHHHHHcCCCCEEEEccCCCCCChh--H------HHHhhhccccCCceEeCcEEEEEcCCCc
Q psy7718 83 NGCLCCSVKDNGVKAIENLMLKRGKFDYILLETTGLADPGP--I------AKVFWLDKELGSDIYLDGIVTVVDCKHT 152 (184)
Q Consensus 83 ~gci~~~~~~~~~~~l~~ll~~~~~~d~iiiE~tg~~dp~~--i------~~~l~~~~~~~~~~~l~~vi~vvDa~~~ 152 (184)
++|+||.+..... . .++++++.|..++.. + ..... .. .-..+.++.|+|+...
T Consensus 141 ~~~~~~~~~~~ll-------~-----~l~lIDTPG~~~~~~~~~~~~~~f~~~~~---~~--l~~aD~il~VvDa~~~ 201 (550)
T 2qpt_A 141 NRFMCAQLPNQVL-------E-----SISIIDTPGILSGAKQRVSRGYDFPAVLR---WF--AERVDLIILLFDAHKL 201 (550)
T ss_dssp TTEEEEECCCHHH-------H-----HCEEEECCCBCC-------CCSCHHHHHH---HH--HHHCSEEEEEEETTSC
T ss_pred ccceEEecccccc-------C-----CEEEEECcCCCCcchhHHHHHhhHHHHHH---HH--HHhCCEEEEEEeCCcC
Confidence 8999998874321 1 347889999987432 1 11110 00 0135779999999763
No 157
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.04 E-value=1.5e-06 Score=70.22 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=29.7
Q ss_pred eecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEe
Q psy7718 16 ELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVIL 53 (184)
Q Consensus 16 ~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~ 53 (184)
+...+++++|+|+||||||||+|.|+ ...+..+.|..
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~ 197 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSE 197 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC--
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCccccccc
Confidence 35568899999999999999999999 87666666554
No 158
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.03 E-value=2e-06 Score=71.31 Aligned_cols=32 Identities=34% Similarity=0.416 Sum_probs=28.7
Q ss_pred CCccccceecCccEEEEEecCCChHHHHHHHHH
Q psy7718 9 VPDLVPAELQPVPVTIITGYLGAGKTTLLNYIL 41 (184)
Q Consensus 9 ~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~ 41 (184)
.++++++.+.++ +++|+|+|||||||+++.|.
T Consensus 13 ~~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 13 GLKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp TEEEEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred CccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 467788888887 89999999999999999987
No 159
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.02 E-value=3e-06 Score=64.50 Aligned_cols=31 Identities=19% Similarity=0.345 Sum_probs=25.7
Q ss_pred ceecCccEEEEEecCCChHHHHHHHHHhcCC
Q psy7718 15 AELQPVPVTIITGYLGAGKTTLLNYILTEQH 45 (184)
Q Consensus 15 l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~ 45 (184)
+...++++++|+||+|||||||++.|++...
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3345789999999999999999999998654
No 160
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.01 E-value=1.6e-06 Score=65.70 Aligned_cols=29 Identities=31% Similarity=0.217 Sum_probs=25.7
Q ss_pred eecCccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 16 ELQPVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 16 ~v~~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
...++.+++|+|++||||||+++.|.+..
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35678899999999999999999999864
No 161
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.01 E-value=1.6e-06 Score=73.17 Aligned_cols=34 Identities=26% Similarity=0.334 Sum_probs=32.1
Q ss_pred CccccceecCccEEEEEecCCChHHHHHHHHHhc
Q psy7718 10 PDLVPAELQPVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 10 l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
-++++|+++.++.++|+|++||||||||+.|++.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 4789999999999999999999999999999976
No 162
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.01 E-value=2.9e-06 Score=65.55 Aligned_cols=32 Identities=34% Similarity=0.294 Sum_probs=28.1
Q ss_pred cccceecCccEEEEEecCCChHHHHHHHHHhc
Q psy7718 12 LVPAELQPVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 12 ~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
+-+...++|.+++|.|++||||||+++.|.+.
T Consensus 12 ~~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 12 TKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCBTTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CccCCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34556788999999999999999999999987
No 163
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.00 E-value=3.5e-06 Score=65.74 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=32.0
Q ss_pred CCCccccceecCccEEEEEecCCChHHHHHHHHHhcCC
Q psy7718 8 EVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQH 45 (184)
Q Consensus 8 ~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~ 45 (184)
.++++++++++++ ++|.|++|+|||||++.+.+...
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC
Confidence 4678889999888 99999999999999999998764
No 164
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.99 E-value=3.1e-06 Score=67.10 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=32.0
Q ss_pred CCCccccceecCccEEEEEecCCChHHHHHHHHHhcCC
Q psy7718 8 EVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQH 45 (184)
Q Consensus 8 ~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~ 45 (184)
.++++++|+++++ ++|.|++|+|||||++.|.+...
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC
Confidence 4677889999888 89999999999999999998764
No 165
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.98 E-value=2.4e-06 Score=69.71 Aligned_cols=35 Identities=17% Similarity=0.170 Sum_probs=26.8
Q ss_pred CccccceecCcc------EEEEEecCCChHHHHHHHHHhcC
Q psy7718 10 PDLVPAELQPVP------VTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 10 l~~v~l~v~~~~------vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
+.+++..+.+.+ +++|+|++|||||||++.|.+..
T Consensus 76 l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 76 LQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 344444444443 89999999999999999998864
No 166
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.97 E-value=4.2e-06 Score=62.34 Aligned_cols=32 Identities=31% Similarity=0.299 Sum_probs=26.5
Q ss_pred cccceecCccEEEEEecCCChHHHHHHHHHhc
Q psy7718 12 LVPAELQPVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 12 ~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
++||...++.+++|+|+.||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 67899999999999999999999999999875
No 167
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.96 E-value=4.4e-06 Score=61.37 Aligned_cols=27 Identities=15% Similarity=0.340 Sum_probs=23.8
Q ss_pred cCccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 18 QPVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 18 ~~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
.++++++|+|++||||||+.+.|.+..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 357899999999999999999998754
No 168
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.95 E-value=1.1e-07 Score=74.11 Aligned_cols=39 Identities=26% Similarity=0.280 Sum_probs=29.1
Q ss_pred cceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEe
Q psy7718 14 PAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVIL 53 (184)
Q Consensus 14 ~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~ 53 (184)
+|++.+ ++++|+||||||||||++.|.+...+.++.|..
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~ 60 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHF 60 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC--
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEE
Confidence 344444 789999999999999999999976655554443
No 169
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.94 E-value=4.8e-06 Score=64.80 Aligned_cols=33 Identities=27% Similarity=0.216 Sum_probs=26.0
Q ss_pred CccEEEEEecCCChHHHHHHHHH---hcCCCCeEEE
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYIL---TEQHDKKIAV 51 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~---~~~~~~~~~v 51 (184)
++++++|+|+|||||||+++.|+ +...+..+.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i 61 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHF 61 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHH
Confidence 35799999999999999999999 6554433333
No 170
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.92 E-value=2.9e-05 Score=67.00 Aligned_cols=121 Identities=19% Similarity=0.203 Sum_probs=63.9
Q ss_pred cCccEEEEEecCCChHHHHHHHHHhcC--CCCeEEEEecccCCcccccceeEecCCCchhhhhhhhcCcceec-ccccch
Q psy7718 18 QPVPVTIITGYLGAGKTTLLNYILTEQ--HDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLELKNGCLCC-SVKDNG 94 (184)
Q Consensus 18 ~~~~vi~i~G~~GsGKTTll~~L~~~~--~~~~~~vi~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~gci~~-~~~~~~ 94 (184)
.+..+++|+|+.|+||||+++.|+... .+.++.++..|........ + ........+.-+.. ....+.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~------q----L~~~~~~~~i~v~~~~~~~dp 168 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFD------Q----LKQNATKARIPFYGSYTEMDP 168 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHH------H----HHHHHHHHTCCEEECCCCSCH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHH------H----HHHHhhccCceEEccCCCCCH
Confidence 345689999999999999999998642 3567777765543211100 0 00000111111111 111122
Q ss_pred H----HHHHHHHHHcCCCCEEEEccCCCCCCh-hHHHHhhhccccCCceEeCcEEEEEcCCCcc
Q psy7718 95 V----KAIENLMLKRGKFDYILLETTGLADPG-PIAKVFWLDKELGSDIYLDGIVTVVDCKHTI 153 (184)
Q Consensus 95 ~----~~l~~ll~~~~~~d~iiiE~tg~~dp~-~i~~~l~~~~~~~~~~~l~~vi~vvDa~~~~ 153 (184)
. ..+..+ +...+|++|+.+.|..+.. .+.+.+... .+.+..+.++.|+|+...+
T Consensus 169 ~~i~~~al~~~--~~~~~DvvIIDTpG~~~~~~~l~~el~~~---~~~i~pd~vllVvDa~~g~ 227 (504)
T 2j37_W 169 VIIASEGVEKF--KNENFEIIIVDTSGRHKQEDSLFEEMLQV---ANAIQPDNIVYVMDASIGQ 227 (504)
T ss_dssp HHHHHHHHHHH--HHTTCCEEEEEECCCCTTCHHHHHHHHHH---HHHHCCSEEEEEEETTCCT
T ss_pred HHHHHHHHHHH--HHCCCcEEEEeCCCCcccchhHHHHHHHH---HhhhcCceEEEEEeccccc
Confidence 2 223332 1267999999999998753 233222111 1112456789999998643
No 171
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.92 E-value=5.6e-06 Score=64.93 Aligned_cols=25 Identities=36% Similarity=0.444 Sum_probs=23.4
Q ss_pred ecCccEEEEEecCCChHHHHHHHHH
Q psy7718 17 LQPVPVTIITGYLGAGKTTLLNYIL 41 (184)
Q Consensus 17 v~~~~vi~i~G~~GsGKTTll~~L~ 41 (184)
..++++++|+|++||||||+++.|.
T Consensus 24 ~~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 24 TAIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999999999999
No 172
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.88 E-value=1e-06 Score=71.98 Aligned_cols=40 Identities=28% Similarity=0.378 Sum_probs=33.1
Q ss_pred CCCCCCccccceecCc-------cEEEEEecCCChHHHHHHHHHhcC
Q psy7718 5 SDSEVPDLVPAELQPV-------PVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~-------~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
+...+++++++.+..+ +.++|.||+|+|||||++.+++..
T Consensus 29 g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 29 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3345777888887755 789999999999999999999864
No 173
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.87 E-value=6.9e-06 Score=62.09 Aligned_cols=30 Identities=30% Similarity=0.542 Sum_probs=26.2
Q ss_pred eecCccEEEEEecCCChHHHHHHHHHhcCC
Q psy7718 16 ELQPVPVTIITGYLGAGKTTLLNYILTEQH 45 (184)
Q Consensus 16 ~v~~~~vi~i~G~~GsGKTTll~~L~~~~~ 45 (184)
+|.++.+++|+|++||||||+.+.|.....
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 577899999999999999999999987653
No 174
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.87 E-value=5.4e-06 Score=64.28 Aligned_cols=39 Identities=21% Similarity=0.133 Sum_probs=26.0
Q ss_pred CCCCccccceec---CccEEEEEecCCChHHHHHHHHHhcCC
Q psy7718 7 SEVPDLVPAELQ---PVPVTIITGYLGAGKTTLLNYILTEQH 45 (184)
Q Consensus 7 ~~~l~~v~l~v~---~~~vi~i~G~~GsGKTTll~~L~~~~~ 45 (184)
..-|.+++|... ++.+++|.|++||||||+++.|.....
T Consensus 10 ~~~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 10 GVDLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp ----------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CcCccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 445677777766 788999999999999999999998654
No 175
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.85 E-value=1.5e-05 Score=61.12 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=25.2
Q ss_pred ecCccEEEEEecCCChHHHHHHHHHhc
Q psy7718 17 LQPVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 17 v~~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
+.+|++++|+|++|||||||++.+++.
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 678999999999999999999999984
No 176
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.85 E-value=9.6e-06 Score=61.25 Aligned_cols=31 Identities=23% Similarity=0.188 Sum_probs=26.7
Q ss_pred ceecCccEEEEEecCCChHHHHHHHHHhcCC
Q psy7718 15 AELQPVPVTIITGYLGAGKTTLLNYILTEQH 45 (184)
Q Consensus 15 l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~ 45 (184)
=+++++.+++|+|++||||||+.+.|.+...
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3466788999999999999999999998653
No 177
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.84 E-value=9.9e-06 Score=61.80 Aligned_cols=26 Identities=38% Similarity=0.432 Sum_probs=22.8
Q ss_pred CccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
.+.+++|+|++||||||+.+.|.+..
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998753
No 178
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.79 E-value=2.5e-05 Score=58.23 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.7
Q ss_pred cEEEEEecCCChHHHHHHHHHhcC
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
-.++|+|++|||||||++.+++..
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 478999999999999999999864
No 179
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.79 E-value=1.4e-05 Score=57.80 Aligned_cols=31 Identities=32% Similarity=0.517 Sum_probs=23.9
Q ss_pred ccccceecCccEEEEEecCCChHHHHHHHHHh
Q psy7718 11 DLVPAELQPVPVTIITGYLGAGKTTLLNYILT 42 (184)
Q Consensus 11 ~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~ 42 (184)
++.++...+ .+.+|+|+|||||||++..|.-
T Consensus 15 ~~~~i~f~~-g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKE-GINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCS-EEEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCC-CeEEEECCCCCCHHHHHHHHHH
Confidence 344444443 4999999999999999999863
No 180
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.77 E-value=3e-05 Score=64.89 Aligned_cols=27 Identities=26% Similarity=0.191 Sum_probs=25.0
Q ss_pred eecCccEEEEEecCCChHHHHHHHHHh
Q psy7718 16 ELQPVPVTIITGYLGAGKTTLLNYILT 42 (184)
Q Consensus 16 ~v~~~~vi~i~G~~GsGKTTll~~L~~ 42 (184)
.+.++..++|+|+||+|||||++.|++
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 456789999999999999999999998
No 181
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.75 E-value=9.5e-06 Score=65.87 Aligned_cols=31 Identities=26% Similarity=0.272 Sum_probs=27.4
Q ss_pred ccccceecCccEEEEEecCCChHHHHHHHHHh
Q psy7718 11 DLVPAELQPVPVTIITGYLGAGKTTLLNYILT 42 (184)
Q Consensus 11 ~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~ 42 (184)
+.++|++.++ +++|+|+|||||||+++.|..
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHH
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHH
Confidence 4677888777 999999999999999999983
No 182
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.75 E-value=0.00018 Score=60.90 Aligned_cols=122 Identities=21% Similarity=0.204 Sum_probs=64.5
Q ss_pred cCccEEEEEecCCChHHHHHHHHHhcC--C-CCeEEEEecccCCcccccceeEecCCCchhhhhhhhcCcceeccc-ccc
Q psy7718 18 QPVPVTIITGYLGAGKTTLLNYILTEQ--H-DKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLELKNGCLCCSV-KDN 93 (184)
Q Consensus 18 ~~~~vi~i~G~~GsGKTTll~~L~~~~--~-~~~~~vi~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~gci~~~~-~~~ 93 (184)
.+..++.++|+.|+||||+...|+... . +.++.++-.|........ + ........|.-+.... ..+
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~------q----l~~~~~~~~l~v~~~~~~~d 167 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIK------Q----LETLAEQVGVDFFPSDVGQK 167 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHH------H----HHHHHHHHTCEECCCCSSSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHH------H----HHhhcccCCeeEEeCCCCCC
Confidence 345689999999999999999998642 3 677777766543221100 0 0001111111111110 011
Q ss_pred hHHHHHHHHHH--cCCCCEEEEccCCCCCCh-hHHHHhhhccccCCceEeCcEEEEEcCCCc
Q psy7718 94 GVKAIENLMLK--RGKFDYILLETTGLADPG-PIAKVFWLDKELGSDIYLDGIVTVVDCKHT 152 (184)
Q Consensus 94 ~~~~l~~ll~~--~~~~d~iiiE~tg~~dp~-~i~~~l~~~~~~~~~~~l~~vi~vvDa~~~ 152 (184)
...-+.+.+.. ...+|+|||.+.|..+.. .+...+... ......+.++.|+|+.+.
T Consensus 168 p~~i~~~~l~~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~---~~~~~p~~vllVvda~~g 226 (433)
T 2xxa_A 168 PVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQV---HASINPVETLFVVDAMTG 226 (433)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCCCCTTCHHHHHHHHHH---HHHSCCSEEEEEEETTBC
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCCcccccHHHHHHHHHH---HHhhcCcceeEEeecchh
Confidence 12212222221 257999999998887652 333322211 111234567888998764
No 183
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.73 E-value=5.1e-05 Score=64.26 Aligned_cols=120 Identities=20% Similarity=0.177 Sum_probs=63.7
Q ss_pred ccEEEEEecCCChHHHHHHHHHhcC--CCCeEEEEecccCCcccccceeEecCCCchhhhhhhhcCcceecc--cccchH
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTEQ--HDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLELKNGCLCCS--VKDNGV 95 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~~--~~~~~~vi~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~gci~~~--~~~~~~ 95 (184)
..+++++|++|+||||++..|+... .+.++.++..+........ + ........+.-+... ...+..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~------q----L~~~~~~~gv~v~~~~~~~~dp~ 168 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYE------Q----LKQLAEKIHVPIYGDETRTKSPV 168 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGG------S----SHHHHHHSSCCEECCSSSCCSSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHH------H----HHHhhhccCcceEecCCCCCCHH
Confidence 4589999999999999999999753 3456666655433211110 0 001101111111110 001111
Q ss_pred HHHHHHHHHcCCCCEEEEccCCCCCChh-HHHHhhhccccCCceEeCcEEEEEcCCCc
Q psy7718 96 KAIENLMLKRGKFDYILLETTGLADPGP-IAKVFWLDKELGSDIYLDGIVTVVDCKHT 152 (184)
Q Consensus 96 ~~l~~ll~~~~~~d~iiiE~tg~~dp~~-i~~~l~~~~~~~~~~~l~~vi~vvDa~~~ 152 (184)
..+.+.+.....+|++|+.+.|...... +...+. .+......+.++.|+|+...
T Consensus 169 ~i~~~~l~~~~~~D~vIIDT~G~~~~~~~l~~~l~---~i~~~~~~d~vllVvda~~g 223 (432)
T 2v3c_C 169 DIVKEGMEKFKKADVLIIDTAGRHKEEKGLLEEMK---QIKEITNPDEIILVIDGTIG 223 (432)
T ss_dssp TTHHHHHHTTSSCSEEEEECCCSCSSHHHHHHHHH---HTTSSSCCSEEEEEEEGGGG
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCccccHHHHHHHH---HHHHHhcCcceeEEeecccc
Confidence 1112333334679999999888877532 333222 12333356678889998654
No 184
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.72 E-value=1.1e-05 Score=58.50 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=24.1
Q ss_pred CccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
+++.++|.|++|+|||||++.+.+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999999864
No 185
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.70 E-value=1.9e-05 Score=59.52 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=20.5
Q ss_pred cEEEEEecCCChHHHHHHHHHh
Q psy7718 21 PVTIITGYLGAGKTTLLNYILT 42 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~ 42 (184)
.+++|+|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 186
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.69 E-value=2.3e-05 Score=66.03 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=27.0
Q ss_pred ceecCccEEEEEecCCChHHHHHHHHHhcCCC
Q psy7718 15 AELQPVPVTIITGYLGAGKTTLLNYILTEQHD 46 (184)
Q Consensus 15 l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~ 46 (184)
+++.++++++|+|+|||||||+++.|.+...+
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 55667899999999999999999999875433
No 187
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.67 E-value=2.7e-05 Score=61.68 Aligned_cols=28 Identities=21% Similarity=0.218 Sum_probs=25.4
Q ss_pred eecCccEEEEEecCCChHHHHHHHHHhc
Q psy7718 16 ELQPVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 16 ~v~~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
-+.+|.+++|+|+||||||||++.+++.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999999864
No 188
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.66 E-value=2.6e-05 Score=57.52 Aligned_cols=27 Identities=30% Similarity=0.180 Sum_probs=23.5
Q ss_pred cCccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 18 QPVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 18 ~~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
.++.+++|+|++||||||+.+.|.+..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999998754
No 189
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.65 E-value=2.7e-05 Score=58.51 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=20.6
Q ss_pred cEEEEEecCCChHHHHHHHHHh
Q psy7718 21 PVTIITGYLGAGKTTLLNYILT 42 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~ 42 (184)
.+++|+|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999998
No 190
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.64 E-value=2.7e-05 Score=57.51 Aligned_cols=27 Identities=30% Similarity=0.311 Sum_probs=22.7
Q ss_pred ecCccEEEEEecCCChHHHHHHHHHhc
Q psy7718 17 LQPVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 17 v~~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
|.++.+++|+|++||||||+.+.|...
T Consensus 1 m~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 1 MDVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 356779999999999999999999864
No 191
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.63 E-value=2.7e-05 Score=58.52 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=22.3
Q ss_pred ccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
..+++|+|++||||||+.+.|.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998754
No 192
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.62 E-value=3.3e-05 Score=57.41 Aligned_cols=35 Identities=26% Similarity=0.219 Sum_probs=20.8
Q ss_pred CCCccccceecCccEEEEEecCCChHHHHHHHHHhc
Q psy7718 8 EVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 8 ~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.+++++++..++. .++++|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4678889887765 6799999999999999999973
No 193
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.61 E-value=2.3e-05 Score=68.29 Aligned_cols=32 Identities=25% Similarity=0.267 Sum_probs=27.7
Q ss_pred eecCccEEEEEecCCChHHHHHHHHHhcCCCC
Q psy7718 16 ELQPVPVTIITGYLGAGKTTLLNYILTEQHDK 47 (184)
Q Consensus 16 ~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~ 47 (184)
.++++.+++|+|+|||||||+++.|.+...+.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~ 396 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM 396 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc
Confidence 46789999999999999999999999875443
No 194
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.59 E-value=4e-05 Score=56.84 Aligned_cols=30 Identities=27% Similarity=0.288 Sum_probs=25.6
Q ss_pred ceecCccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 15 AELQPVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 15 l~v~~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
+...++.++.|+|++||||||+.+.|....
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 344578899999999999999999998754
No 195
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.58 E-value=4.3e-05 Score=55.95 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=23.0
Q ss_pred ccEEEEEecCCChHHHHHHHHHhcCC
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTEQH 45 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~~~ 45 (184)
+.++.|+|++||||||+.+.|.....
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999987653
No 196
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.57 E-value=4.6e-05 Score=56.42 Aligned_cols=28 Identities=36% Similarity=0.418 Sum_probs=24.1
Q ss_pred ecCccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 17 LQPVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 17 v~~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
++++.++.|+|++||||||+.+.|....
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4567799999999999999999998643
No 197
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.55 E-value=5.5e-05 Score=56.57 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=24.8
Q ss_pred ecCccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 17 LQPVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 17 v~~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
|.++.+++|+|+.||||||+.+.|....
T Consensus 1 m~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 1 MSRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3467899999999999999999999865
No 198
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.55 E-value=4.2e-05 Score=57.13 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=21.2
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
-.++|+|++|+|||||++.+++.
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999986
No 199
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.53 E-value=6.5e-05 Score=61.75 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=26.6
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhc
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
..+|++++++++ .++|+|..|||||||++.|++.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 457888887776 8999999999999999999984
No 200
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.51 E-value=5.5e-05 Score=54.82 Aligned_cols=23 Identities=22% Similarity=0.156 Sum_probs=20.9
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.+++|+|++||||||+.+.|...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999865
No 201
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.50 E-value=1.7e-05 Score=69.79 Aligned_cols=44 Identities=11% Similarity=0.169 Sum_probs=38.1
Q ss_pred CCCCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCe
Q psy7718 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKK 48 (184)
Q Consensus 5 ~~~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~ 48 (184)
+...+++.+++.+..++.++|.|++|+||||+++.|.+...+..
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 88 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTET 88 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCccc
Confidence 34557888999999999999999999999999999999765544
No 202
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.50 E-value=1.7e-05 Score=59.44 Aligned_cols=35 Identities=29% Similarity=0.274 Sum_probs=30.2
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHh
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILT 42 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~ 42 (184)
..++++++|..++. .++++|++|+|||||++.+.+
T Consensus 13 ~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 13 SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 35788889888776 578999999999999999986
No 203
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.50 E-value=6.3e-05 Score=57.70 Aligned_cols=49 Identities=16% Similarity=0.137 Sum_probs=34.7
Q ss_pred CCCCCccc-cceecCccEEEEEecCCChHHHHHHHHHhc--CCCCeEEEEec
Q psy7718 6 DSEVPDLV-PAELQPVPVTIITGYLGAGKTTLLNYILTE--QHDKKIAVILN 54 (184)
Q Consensus 6 ~~~~l~~v-~l~v~~~~vi~i~G~~GsGKTTll~~L~~~--~~~~~~~vi~~ 54 (184)
+.+.||.+ .--+.+|++++|.|++|||||||+..++.. ..+.++.++..
T Consensus 8 G~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 8 GIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp CCTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CchhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 34556666 556889999999999999999997766543 23444544443
No 204
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.49 E-value=5.6e-05 Score=60.67 Aligned_cols=28 Identities=18% Similarity=0.122 Sum_probs=24.3
Q ss_pred cCccEEEEEecCCChHHHHHHHHHhcCC
Q psy7718 18 QPVPVTIITGYLGAGKTTLLNYILTEQH 45 (184)
Q Consensus 18 ~~~~vi~i~G~~GsGKTTll~~L~~~~~ 45 (184)
.++.+++|+|++|||||||.+.|.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4567999999999999999999987653
No 205
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.49 E-value=6e-05 Score=57.26 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.1
Q ss_pred cCccEEEEEecCCChHHHHHHHHHh
Q psy7718 18 QPVPVTIITGYLGAGKTTLLNYILT 42 (184)
Q Consensus 18 ~~~~vi~i~G~~GsGKTTll~~L~~ 42 (184)
.++.+++|+|++||||||+.+.|..
T Consensus 2 ~~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 2 SLRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999986
No 206
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.49 E-value=4.9e-05 Score=57.63 Aligned_cols=31 Identities=23% Similarity=0.119 Sum_probs=26.7
Q ss_pred ceecCccEEEEEecCCChHHHHHHHHHhcCC
Q psy7718 15 AELQPVPVTIITGYLGAGKTTLLNYILTEQH 45 (184)
Q Consensus 15 l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~ 45 (184)
+.+.++.++.|+|++||||||+.+.|.+...
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567788999999999999999999987643
No 207
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.48 E-value=4.8e-05 Score=61.18 Aligned_cols=29 Identities=31% Similarity=0.368 Sum_probs=24.1
Q ss_pred ceecCccEEEEEecCCChHHHHHHHHHhc
Q psy7718 15 AELQPVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 15 l~v~~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
++..+...++|+|++|+|||||++.|++.
T Consensus 3 v~~~r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 3 IDKSYCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp -CCCEEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cccccCCEEEEECCCCCCHHHHHHHHHCC
Confidence 33445668999999999999999999975
No 208
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.48 E-value=7.4e-05 Score=56.23 Aligned_cols=28 Identities=18% Similarity=0.229 Sum_probs=23.8
Q ss_pred eecCccEEEEEecCCChHHHHHHHHHhc
Q psy7718 16 ELQPVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 16 ~v~~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.++++.+++|+|+.||||||+.+.|...
T Consensus 5 ~~~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 5 AARRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp --CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3567889999999999999999999864
No 209
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.48 E-value=6.4e-05 Score=64.94 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=28.0
Q ss_pred cceecCccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 14 PAELQPVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 14 ~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
+..+.+|++++|+|+||||||||++.+++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999999999999853
No 210
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.47 E-value=0.00036 Score=57.62 Aligned_cols=36 Identities=28% Similarity=0.193 Sum_probs=28.3
Q ss_pred ecCccEEEEEecCCChHHHHHHHHHhcC--CCCeEEEE
Q psy7718 17 LQPVPVTIITGYLGAGKTTLLNYILTEQ--HDKKIAVI 52 (184)
Q Consensus 17 v~~~~vi~i~G~~GsGKTTll~~L~~~~--~~~~~~vi 52 (184)
+.++.++.|.|++|+|||||+..++... .+.++..+
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyI 95 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFI 95 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 5678899999999999999999998753 33444444
No 211
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.47 E-value=6.2e-05 Score=56.63 Aligned_cols=23 Identities=39% Similarity=0.618 Sum_probs=20.4
Q ss_pred EEEEEecCCChHHHHHHHHHhcC
Q psy7718 22 VTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
-++|+||+|||||||++.|+...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 37899999999999999998764
No 212
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.47 E-value=5.6e-05 Score=55.65 Aligned_cols=28 Identities=32% Similarity=0.471 Sum_probs=23.9
Q ss_pred ecCccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 17 LQPVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 17 v~~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
+.++++++|+|++||||||+.+.|....
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4567789999999999999999998643
No 213
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.45 E-value=5.3e-05 Score=69.00 Aligned_cols=29 Identities=21% Similarity=0.346 Sum_probs=27.9
Q ss_pred CCccccceecCccEEEEEecCCChHHHHH
Q psy7718 9 VPDLVPAELQPVPVTIITGYLGAGKTTLL 37 (184)
Q Consensus 9 ~l~~v~l~v~~~~vi~i~G~~GsGKTTll 37 (184)
=|+||+++++++..++|+|.+|||||||.
T Consensus 25 NLkni~v~iP~~~l~viTGvSGSGKSSLa 53 (842)
T 2vf7_A 25 NLKDISVKVPRDALVVFTGVSGSGKSSLA 53 (842)
T ss_dssp TCCSEEEEEESSSEEEEESSTTSSHHHHH
T ss_pred CCCCeeEEecCCCEEEEECCCCCCHHHHH
Confidence 48999999999999999999999999998
No 214
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.45 E-value=3.3e-05 Score=66.67 Aligned_cols=36 Identities=22% Similarity=0.178 Sum_probs=31.1
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhc
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
...+++++|+..++ +.+|+|+|||||||+++.|...
T Consensus 48 f~~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp BTTBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred ccceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 34678889998888 9999999999999999999543
No 215
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.45 E-value=7.8e-05 Score=56.57 Aligned_cols=30 Identities=33% Similarity=0.534 Sum_probs=23.3
Q ss_pred ccccceecCccEEEEEecCCChHHHHHHHHH
Q psy7718 11 DLVPAELQPVPVTIITGYLGAGKTTLLNYIL 41 (184)
Q Consensus 11 ~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~ 41 (184)
.+.++...+ .+.+|+|+|||||||++..|.
T Consensus 15 ~~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 334444443 599999999999999999885
No 216
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.44 E-value=9e-05 Score=55.71 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=24.1
Q ss_pred ecCccEEEEEecCCChHHHHHHHHHhc
Q psy7718 17 LQPVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 17 v~~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
+.++.+++|+|+.||||||+.+.|...
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 566789999999999999999999864
No 217
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.44 E-value=8.3e-05 Score=55.13 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=24.5
Q ss_pred ecCccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 17 LQPVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 17 v~~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
+.++.+++|+|+.||||||+.+.|....
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5577899999999999999999998643
No 218
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.42 E-value=7.7e-05 Score=53.87 Aligned_cols=20 Identities=35% Similarity=0.649 Sum_probs=18.9
Q ss_pred cEEEEEecCCChHHHHHHHH
Q psy7718 21 PVTIITGYLGAGKTTLLNYI 40 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L 40 (184)
.+++|+|+.||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999999
No 219
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.42 E-value=4.5e-05 Score=66.30 Aligned_cols=42 Identities=24% Similarity=0.313 Sum_probs=33.3
Q ss_pred CCccccceecCccEEEEEecCCChHHHHHHHHHhcCCCCeEEE
Q psy7718 9 VPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAV 51 (184)
Q Consensus 9 ~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~v 51 (184)
++.++++++ +++.++|.||+|+||||+++.|.+...+..+.+
T Consensus 98 ~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i 139 (543)
T 3m6a_A 98 AVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRI 139 (543)
T ss_dssp HHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEE
Confidence 455667777 789999999999999999999998765443443
No 220
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.40 E-value=9.5e-05 Score=54.03 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=22.1
Q ss_pred CccEEEEEecCCChHHHHHHHHHhc
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
++..++|+|++|+|||||++.+.+.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999975
No 221
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.37 E-value=0.00017 Score=62.13 Aligned_cols=37 Identities=22% Similarity=0.228 Sum_probs=32.4
Q ss_pred CCCCccccceecCccEEEEEecCCChHHHHHHHHHhcCC
Q psy7718 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQH 45 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~ 45 (184)
..+++++++.++++ +.|.||+|+|||||++.+.+...
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC
Confidence 35678889988888 89999999999999999998764
No 222
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.37 E-value=0.00035 Score=57.42 Aligned_cols=39 Identities=28% Similarity=0.145 Sum_probs=29.3
Q ss_pred ecCccEEEEEecCCChHHHHHHHHHhcC--CCCeEEEEecc
Q psy7718 17 LQPVPVTIITGYLGAGKTTLLNYILTEQ--HDKKIAVILNE 55 (184)
Q Consensus 17 v~~~~vi~i~G~~GsGKTTll~~L~~~~--~~~~~~vi~~~ 55 (184)
++++.++.|.|++|+|||||...++... .+.++..+..+
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 5688999999999999999998887542 34455544433
No 223
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.36 E-value=0.00011 Score=54.16 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.7
Q ss_pred ccEEEEEecCCChHHHHHHHHHhc
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
+.+++|+|++||||||+.+.|...
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999874
No 224
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.36 E-value=2.4e-05 Score=63.63 Aligned_cols=38 Identities=24% Similarity=0.224 Sum_probs=32.0
Q ss_pred CCCCccccceecCccE--EEEEecCCChHHHHHHHHHhcC
Q psy7718 7 SEVPDLVPAELQPVPV--TIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 7 ~~~l~~v~l~v~~~~v--i~i~G~~GsGKTTll~~L~~~~ 44 (184)
..+++.++..+..+++ +.|.||+|+||||+++.+++..
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 4466777777888776 9999999999999999999863
No 225
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.35 E-value=0.00012 Score=54.88 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=23.0
Q ss_pred CccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
++.+++|.|+.||||||+.+.|....
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998753
No 226
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.33 E-value=0.0001 Score=68.00 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=27.8
Q ss_pred CCccccceecCccEEEEEecCCChHHHHH
Q psy7718 9 VPDLVPAELQPVPVTIITGYLGAGKTTLL 37 (184)
Q Consensus 9 ~l~~v~l~v~~~~vi~i~G~~GsGKTTll 37 (184)
=|+||++++++.+.++|+|.+|||||||.
T Consensus 35 NLkni~v~iP~~~lvv~tG~SGSGKSSLa 63 (993)
T 2ygr_A 35 NLRSVDLDLPRDALIVFTGLSGSGKSSLA 63 (993)
T ss_dssp SCCSEEEEEESSSEEEEEESTTSSHHHHH
T ss_pred ccCceeeeccCCCEEEEECCCCCcHHHHH
Confidence 38999999999999999999999999997
No 227
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.33 E-value=0.0001 Score=67.78 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=27.7
Q ss_pred CCccccceecCccEEEEEecCCChHHHHH
Q psy7718 9 VPDLVPAELQPVPVTIITGYLGAGKTTLL 37 (184)
Q Consensus 9 ~l~~v~l~v~~~~vi~i~G~~GsGKTTll 37 (184)
=|+||++++++.+.++|+|.+|||||||.
T Consensus 33 NLkni~v~iP~~~lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 33 NLKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (972)
T ss_dssp SCCSEEEEEETTSEEEEEESTTSSHHHHH
T ss_pred cCCceeeeccCCcEEEEECCCCCCHHHHH
Confidence 38999999999999999999999999997
No 228
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.32 E-value=0.00015 Score=54.07 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.8
Q ss_pred ccEEEEEecCCChHHHHHHHHHhc
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
..+++|+|+.||||||+.+.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 458999999999999999999875
No 229
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.32 E-value=6.6e-05 Score=55.81 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=25.2
Q ss_pred ceecCccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 15 AELQPVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 15 l~v~~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
..++++.+++|+|+.||||||+.+.|....
T Consensus 7 ~~~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 7 EDLRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 345567799999999999999999998753
No 230
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.32 E-value=0.00011 Score=57.34 Aligned_cols=30 Identities=27% Similarity=0.276 Sum_probs=25.6
Q ss_pred eecCccEEEEEecCCChHHHHHHHHHhcCC
Q psy7718 16 ELQPVPVTIITGYLGAGKTTLLNYILTEQH 45 (184)
Q Consensus 16 ~v~~~~vi~i~G~~GsGKTTll~~L~~~~~ 45 (184)
...++.++.|+|++||||||+.+.|.....
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 455677999999999999999999987654
No 231
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.32 E-value=0.00011 Score=53.91 Aligned_cols=24 Identities=25% Similarity=0.553 Sum_probs=21.3
Q ss_pred cEEEEEecCCChHHHHHHHHHhcC
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
+++.|+|++||||||+.+.|....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 479999999999999999998653
No 232
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.32 E-value=0.00015 Score=58.00 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=23.8
Q ss_pred cCccEEEEEecCCChHHHHHHHHHhcCC
Q psy7718 18 QPVPVTIITGYLGAGKTTLLNYILTEQH 45 (184)
Q Consensus 18 ~~~~vi~i~G~~GsGKTTll~~L~~~~~ 45 (184)
.++.++.|+|++||||||+.+.|.....
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3466899999999999999999987653
No 233
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.32 E-value=9.6e-05 Score=67.90 Aligned_cols=29 Identities=24% Similarity=0.389 Sum_probs=28.0
Q ss_pred CCccccceecCccEEEEEecCCChHHHHH
Q psy7718 9 VPDLVPAELQPVPVTIITGYLGAGKTTLL 37 (184)
Q Consensus 9 ~l~~v~l~v~~~~vi~i~G~~GsGKTTll 37 (184)
=|+||++++++.+.++|+|.+|||||||.
T Consensus 13 NLkni~~~ip~~~l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 13 NLKNITVRIPKNRLVVITGVSGSGKSSLA 41 (916)
T ss_dssp TCCSBCCEEETTSEEEEEESTTSSSHHHH
T ss_pred ccCcceeccCCCcEEEEECCCCCcHHHHH
Confidence 48999999999999999999999999998
No 234
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.31 E-value=0.00013 Score=52.77 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=21.1
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
..++++|++|+|||||++.+.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999974
No 235
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.31 E-value=5.7e-05 Score=56.91 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=21.0
Q ss_pred EEEEEecCCChHHHHHHHHHhcC
Q psy7718 22 VTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
+++|.|++||||||+++.|....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998764
No 236
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.31 E-value=0.00014 Score=53.56 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=22.2
Q ss_pred CccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
.++.++|+|+.||||||+.+.|....
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998653
No 237
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.31 E-value=4.7e-05 Score=62.82 Aligned_cols=35 Identities=23% Similarity=0.314 Sum_probs=30.2
Q ss_pred CCccccceecCccE--EEEEecCCChHHHHHHHHHhc
Q psy7718 9 VPDLVPAELQPVPV--TIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 9 ~l~~v~l~v~~~~v--i~i~G~~GsGKTTll~~L~~~ 43 (184)
+++.+++.+.++++ ++|+|++||||||+.+.|.+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 56778888888777 999999999999999988863
No 238
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.28 E-value=0.00014 Score=57.04 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=22.8
Q ss_pred ecCccEEEEEecCCChHHHHHHHHHhc
Q psy7718 17 LQPVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 17 v~~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
|.++.++.|+|++||||||+.+.|...
T Consensus 1 M~~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 1 MGDIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 345779999999999999999999864
No 239
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.28 E-value=0.00016 Score=55.72 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=23.1
Q ss_pred cCccEEEEEecCCChHHHHHHHHHhc
Q psy7718 18 QPVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 18 ~~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.++.+++|+|++||||||+.+.|.+.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45779999999999999999999864
No 240
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.24 E-value=0.00017 Score=52.55 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=20.4
Q ss_pred cEEEEEecCCChHHHHHHHHHh
Q psy7718 21 PVTIITGYLGAGKTTLLNYILT 42 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~ 42 (184)
.++.|.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 241
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=97.23 E-value=0.00017 Score=58.87 Aligned_cols=28 Identities=36% Similarity=0.613 Sum_probs=22.0
Q ss_pred ccceecCccEEEEEecCCChHHHHHHHHH
Q psy7718 13 VPAELQPVPVTIITGYLGAGKTTLLNYIL 41 (184)
Q Consensus 13 v~l~v~~~~vi~i~G~~GsGKTTll~~L~ 41 (184)
..+...+ .+.+|+|+|||||||++..|.
T Consensus 17 ~~i~f~~-~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 17 TVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEcCCC-CeEEEECCCCCCHHHHHHHHH
Confidence 3344433 489999999999999999874
No 242
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.22 E-value=0.00019 Score=52.56 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.5
Q ss_pred ccEEEEEecCCChHHHHHHHHHhc
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
...++++|++|+|||||++.+++.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999974
No 243
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.21 E-value=0.00024 Score=52.32 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=21.6
Q ss_pred ccEEEEEecCCChHHHHHHHHHhc
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
..+++|+|+.||||||+.+.|...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999864
No 244
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.20 E-value=0.00021 Score=52.59 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.2
Q ss_pred cEEEEEecCCChHHHHHHHHHhcC
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
.++.|.|+.||||||+.+.|....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999998753
No 245
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.20 E-value=0.00019 Score=53.34 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=20.8
Q ss_pred EEEEEecCCChHHHHHHHHHhcC
Q psy7718 22 VTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
+++|.|+.||||||+.+.|....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999998754
No 246
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.17 E-value=0.00015 Score=53.19 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=18.3
Q ss_pred CccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
++.++.|+|+.||||||+.+.|....
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998654
No 247
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.16 E-value=0.00021 Score=56.00 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=21.5
Q ss_pred cEEEEEecCCChHHHHHHHHHhcC
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
++++|+|++||||||+.+.|++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 578999999999999999998754
No 248
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.16 E-value=0.00025 Score=59.45 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=22.9
Q ss_pred ecCccEEEEEecCCChHHHHHHHHH
Q psy7718 17 LQPVPVTIITGYLGAGKTTLLNYIL 41 (184)
Q Consensus 17 v~~~~vi~i~G~~GsGKTTll~~L~ 41 (184)
+.+++++.|.|++|||||||++.++
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHH
Confidence 6789999999999999999999765
No 249
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.15 E-value=0.00015 Score=58.87 Aligned_cols=34 Identities=21% Similarity=0.194 Sum_probs=25.5
Q ss_pred cCccEEEEEecCCChHHHHHHHHHh-cCCCCeEEE
Q psy7718 18 QPVPVTIITGYLGAGKTTLLNYILT-EQHDKKIAV 51 (184)
Q Consensus 18 ~~~~vi~i~G~~GsGKTTll~~L~~-~~~~~~~~v 51 (184)
.+.+.+.|.|++|+||||+++.+++ ...+..+.+
T Consensus 34 ~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i 68 (354)
T 1sxj_E 34 RDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRL 68 (354)
T ss_dssp TCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC-
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeE
Confidence 3445599999999999999999998 444444433
No 250
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.12 E-value=0.00026 Score=52.13 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=21.4
Q ss_pred ccEEEEEecCCChHHHHHHHHHhc
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
+.+++|+|+.||||||+.+.|...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998864
No 251
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.12 E-value=0.0003 Score=58.84 Aligned_cols=32 Identities=25% Similarity=0.191 Sum_probs=30.2
Q ss_pred cccceecCccEEEEEecCCChHHHHHHHHHhc
Q psy7718 12 LVPAELQPVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 12 ~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
|+.+.+.+|..++|.|++|+|||||++.|.+.
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 89999999999999999999999999998874
No 252
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.11 E-value=0.00028 Score=52.77 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=23.5
Q ss_pred ecCccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 17 LQPVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 17 v~~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
-.+..+++|+|+.||||||+.+.|....
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3445689999999999999999998654
No 253
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.11 E-value=0.00031 Score=53.72 Aligned_cols=27 Identities=30% Similarity=0.326 Sum_probs=22.5
Q ss_pred cCccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 18 QPVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 18 ~~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
.++.+++|.|+.||||||+.+.|....
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998654
No 254
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.11 E-value=0.00024 Score=58.63 Aligned_cols=30 Identities=17% Similarity=0.332 Sum_probs=24.0
Q ss_pred ccccceecCccEEEEEecCCChHHHHHHHHH
Q psy7718 11 DLVPAELQPVPVTIITGYLGAGKTTLLNYIL 41 (184)
Q Consensus 11 ~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~ 41 (184)
++..++..+ .+++|+|+|||||||++..|.
T Consensus 17 ~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 17 VNSRIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred cceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 444555444 599999999999999999886
No 255
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.10 E-value=0.0003 Score=52.57 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=21.0
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
++++|+|++||||||+.+.|...
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 48999999999999999999874
No 256
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.07 E-value=0.00025 Score=52.16 Aligned_cols=22 Identities=41% Similarity=0.644 Sum_probs=20.2
Q ss_pred EEEEEecCCChHHHHHHHHHhc
Q psy7718 22 VTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.++|+|++|+|||||++.+++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999974
No 257
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.06 E-value=0.00033 Score=54.53 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=21.7
Q ss_pred CccEEEEEecCCChHHHHHHHHHhc
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
+..+++|+|+.||||||+-+.|...
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999764
No 258
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.06 E-value=0.00033 Score=51.84 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.6
Q ss_pred EEEEEecCCChHHHHHHHHHhcC
Q psy7718 22 VTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
+++|+|+.||||||+.+.|....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998753
No 259
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.06 E-value=0.00032 Score=54.50 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=21.2
Q ss_pred EEEEEecCCChHHHHHHHHHhcCC
Q psy7718 22 VTIITGYLGAGKTTLLNYILTEQH 45 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~~~ 45 (184)
-+.|.|++|+||||+++.+.+...
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECcCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998643
No 260
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.06 E-value=0.00049 Score=55.58 Aligned_cols=50 Identities=16% Similarity=0.131 Sum_probs=36.0
Q ss_pred CCCccccceecCccEEEEEecCCChHHHHHHHHHhc--CCCCeEEEEecccC
Q psy7718 8 EVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTE--QHDKKIAVILNEFG 57 (184)
Q Consensus 8 ~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~--~~~~~~~vi~~~~~ 57 (184)
+.||.+.--+.+|.++.|.|++|+|||||...++.. ..+.++.++..|..
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s 107 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG 107 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSC
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 345555545789999999999999999999888753 23445555555543
No 261
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.06 E-value=0.00034 Score=54.37 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=21.6
Q ss_pred CccEEEEEecCCChHHHHHHHHHhc
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
+..+++|+|++||||||+.+.|...
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999864
No 262
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.04 E-value=0.00038 Score=52.84 Aligned_cols=26 Identities=23% Similarity=0.179 Sum_probs=22.7
Q ss_pred CccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
++..++|.|+.||||||+.+.|....
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998754
No 263
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.03 E-value=0.00038 Score=52.97 Aligned_cols=26 Identities=27% Similarity=0.234 Sum_probs=22.5
Q ss_pred CccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
++..+.|.|+.||||||+.+.|....
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998653
No 264
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.03 E-value=0.00031 Score=51.70 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=21.3
Q ss_pred ccEEEEEecCCChHHHHHHHHHhc
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
+++++|+|+.||||||+.+.|...
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999864
No 265
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.02 E-value=0.00041 Score=54.60 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.7
Q ss_pred ccEEEEEecCCChHHHHHHHHHhc
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
...++|+|++|+|||||++.|++.
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999975
No 266
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.01 E-value=0.00047 Score=49.78 Aligned_cols=26 Identities=42% Similarity=0.549 Sum_probs=22.9
Q ss_pred cCccEEEEEecCCChHHHHHHHHHhc
Q psy7718 18 QPVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 18 ~~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
++...++++|..|+|||||++.+.+.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45678999999999999999999863
No 267
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.01 E-value=0.00053 Score=50.43 Aligned_cols=25 Identities=20% Similarity=0.495 Sum_probs=22.4
Q ss_pred CccEEEEEecCCChHHHHHHHHHhc
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
+...++++|+.|+|||||++.+++.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999875
No 268
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.01 E-value=0.00041 Score=49.20 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=21.0
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
+.++++|+.|+|||||++.+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999875
No 269
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.00 E-value=0.00039 Score=53.46 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=22.2
Q ss_pred ccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
...++|+|++|+|||||++.|++..
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCC
Confidence 3579999999999999999999854
No 270
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.00 E-value=0.00036 Score=50.64 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=21.3
Q ss_pred cEEEEEecCCChHHHHHHHHHhcC
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
.+++|+|+.||||||+.+.|....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998643
No 271
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.99 E-value=0.00041 Score=51.12 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=20.6
Q ss_pred EEEEEecCCChHHHHHHHHHhcC
Q psy7718 22 VTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
+++|+|+.||||||+.+.|....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998753
No 272
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.00049 Score=50.59 Aligned_cols=26 Identities=38% Similarity=0.547 Sum_probs=22.8
Q ss_pred CccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
+...++++|+.|+|||||++.+.+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45589999999999999999999754
No 273
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.98 E-value=0.00049 Score=51.45 Aligned_cols=26 Identities=23% Similarity=0.178 Sum_probs=22.2
Q ss_pred CccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
++-+++|+|+.||||||+.+.|....
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999998643
No 274
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.98 E-value=0.00058 Score=49.97 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=22.2
Q ss_pred CccEEEEEecCCChHHHHHHHHHhc
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
..+.++++|..|+|||||++.+++.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3458999999999999999999875
No 275
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.96 E-value=0.0002 Score=57.41 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=19.2
Q ss_pred CccEEEEEecCCChHHHHHHHHHhc
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
+..+++|+|++||||||+.+.|...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999864
No 276
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.93 E-value=0.0005 Score=51.89 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.1
Q ss_pred EEEEEecCCChHHHHHHHHHhcC
Q psy7718 22 VTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
.++|+|+.||||||+.+.|....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997643
No 277
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.92 E-value=0.00048 Score=56.90 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=21.8
Q ss_pred ccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
.++++|+|++|+|||||++.|++..
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCC
Confidence 4569999999999999999999753
No 278
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.90 E-value=0.00049 Score=51.50 Aligned_cols=35 Identities=17% Similarity=0.074 Sum_probs=24.8
Q ss_pred CCccccceecCccEEEEEecCCChHHHHHHHHHhc
Q psy7718 9 VPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 9 ~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
...++.|.-.....++++|..|+|||||++.+.+.
T Consensus 14 ~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 14 GTENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp -----CGGGSEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cccccccccccCcEEEEECcCCCCHHHHHHHHhcC
Confidence 44555555444557999999999999999999974
No 279
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.89 E-value=0.00052 Score=61.01 Aligned_cols=30 Identities=27% Similarity=0.331 Sum_probs=25.2
Q ss_pred cceecCccEEEEEecCCChHHHHHHHHHhc
Q psy7718 14 PAELQPVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 14 ~l~v~~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
++++.+++.++|+|++|+|||||+++|++.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~ 32 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYK 32 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHh
Confidence 456788999999999999999999999964
No 280
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.89 E-value=0.00056 Score=49.38 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=20.0
Q ss_pred EEEEEecCCChHHHHHHHHHhc
Q psy7718 22 VTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.++|+|+.||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 281
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.89 E-value=0.00056 Score=53.10 Aligned_cols=27 Identities=26% Similarity=0.242 Sum_probs=23.2
Q ss_pred cCccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 18 QPVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 18 ~~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
.++.+++|+|+.||||||+.+.|....
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 456689999999999999999998643
No 282
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.88 E-value=0.00066 Score=48.57 Aligned_cols=26 Identities=35% Similarity=0.362 Sum_probs=22.2
Q ss_pred cCccEEEEEecCCChHHHHHHHHHhc
Q psy7718 18 QPVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 18 ~~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
++...++++|+.|+|||||++.+.+.
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34557999999999999999999863
No 283
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.88 E-value=0.0006 Score=48.21 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=20.1
Q ss_pred EEEEEecCCChHHHHHHHHHhc
Q psy7718 22 VTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.++++|..|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 284
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.87 E-value=0.00041 Score=57.49 Aligned_cols=25 Identities=24% Similarity=0.174 Sum_probs=22.6
Q ss_pred CccEEEEEecCCChHHHHHHHHHhc
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
..+-+.|+|++||||||+++.++..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999875
No 285
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.86 E-value=0.00048 Score=53.31 Aligned_cols=29 Identities=28% Similarity=0.331 Sum_probs=21.4
Q ss_pred eecCccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 16 ELQPVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 16 ~v~~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
+|.+|..+.|.|+.||||||+++.|....
T Consensus 21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 21 SMARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp --CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46678899999999999999999998753
No 286
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.86 E-value=0.0025 Score=53.94 Aligned_cols=43 Identities=16% Similarity=0.177 Sum_probs=32.9
Q ss_pred ecCccEEEEEecCCChHHHHHHHHHhc--CCCCeEEEEecccCCc
Q psy7718 17 LQPVPVTIITGYLGAGKTTLLNYILTE--QHDKKIAVILNEFGEG 59 (184)
Q Consensus 17 v~~~~vi~i~G~~GsGKTTll~~L~~~--~~~~~~~vi~~~~~~~ 59 (184)
+.+|.++.|.|+.|+|||||.-.++.. ..+.++.++..|....
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~~ 238 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKK 238 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCTT
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCHH
Confidence 678999999999999999999888753 2355666666565443
No 287
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.86 E-value=0.00063 Score=51.20 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=21.5
Q ss_pred ccEEEEEecCCChHHHHHHHHHhc
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
-.+++|+|+.||||||+.+.|...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999865
No 288
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.85 E-value=0.00068 Score=53.87 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.8
Q ss_pred ccEEEEEecCCChHHHHHHHHHh
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILT 42 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~ 42 (184)
..+++|+|+.||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999984
No 289
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.85 E-value=0.00069 Score=56.85 Aligned_cols=31 Identities=26% Similarity=0.360 Sum_probs=25.5
Q ss_pred cceecCccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 14 PAELQPVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 14 ~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
.+...+..+++++|++||||||+.+.|....
T Consensus 252 ~~~~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 252 SLLSPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CSCCSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred ccCCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3445567799999999999999999998653
No 290
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.85 E-value=0.00063 Score=51.35 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.3
Q ss_pred EEEEEecCCChHHHHHHHHHhcC
Q psy7718 22 VTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
.++|+|+.||||||+.+.|....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997654
No 291
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.85 E-value=0.00054 Score=50.43 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=21.7
Q ss_pred CccEEEEEecCCChHHHHHHHHHhc
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
+.-.++|+|..|+|||||++.+.+.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3447899999999999999999874
No 292
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.84 E-value=0.00062 Score=48.48 Aligned_cols=23 Identities=13% Similarity=0.249 Sum_probs=20.5
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
-.++++|+.|+|||||++.+.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999874
No 293
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.82 E-value=0.00064 Score=51.02 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.2
Q ss_pred ccEEEEEecCCChHHHHHHHHHhc
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.-.++|+|..|+|||||++.+.+.
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 447899999999999999999864
No 294
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.82 E-value=0.00082 Score=48.47 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.9
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
..++++|..|+|||||++.+.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999999874
No 295
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.81 E-value=0.00083 Score=50.45 Aligned_cols=26 Identities=38% Similarity=0.547 Sum_probs=22.7
Q ss_pred CccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
+.+.++++|+.|+|||||++.+.+..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35689999999999999999999753
No 296
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.81 E-value=0.0011 Score=55.41 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=24.1
Q ss_pred eecCccEEEEEecCCChHHHHHHHHHhc
Q psy7718 16 ELQPVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 16 ~v~~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.+.++..++|+|++|+|||||++.|++.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4556778999999999999999999975
No 297
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.81 E-value=0.00069 Score=48.36 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=20.1
Q ss_pred EEEEEecCCChHHHHHHHHHhc
Q psy7718 22 VTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.++++|..|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999999874
No 298
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.81 E-value=0.00069 Score=48.09 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=20.5
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
-.++++|..|+|||||++.+.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35889999999999999999864
No 299
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.81 E-value=0.00075 Score=48.89 Aligned_cols=25 Identities=20% Similarity=0.470 Sum_probs=21.2
Q ss_pred CccEEEEEecCCChHHHHHHHHHhc
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
...+++|+|+.||||||+.+.|...
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999864
No 300
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.80 E-value=0.00098 Score=53.28 Aligned_cols=30 Identities=30% Similarity=0.368 Sum_probs=25.8
Q ss_pred eecCccEEEEEecCCChHHHHHHHHHhcCC
Q psy7718 16 ELQPVPVTIITGYLGAGKTTLLNYILTEQH 45 (184)
Q Consensus 16 ~v~~~~vi~i~G~~GsGKTTll~~L~~~~~ 45 (184)
.+.++..+.|.|++|+||||+.+.+.+...
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 356677899999999999999999998653
No 301
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.79 E-value=0.00071 Score=47.95 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=20.1
Q ss_pred EEEEEecCCChHHHHHHHHHhc
Q psy7718 22 VTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.++++|+.|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 302
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.79 E-value=0.00078 Score=48.04 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.2
Q ss_pred EEEEEecCCChHHHHHHHHHhc
Q psy7718 22 VTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.++++|+.|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 303
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.78 E-value=0.001 Score=57.34 Aligned_cols=46 Identities=20% Similarity=0.359 Sum_probs=35.8
Q ss_pred cccceecCccEEEEEecCCChHHHHHHHHHh----cCCCCeEEEEecccC
Q psy7718 12 LVPAELQPVPVTIITGYLGAGKTTLLNYILT----EQHDKKIAVILNEFG 57 (184)
Q Consensus 12 ~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~----~~~~~~~~vi~~~~~ 57 (184)
.+++.+.+++.+.|.|.+||||||+++.|+. ...+..+.++.-|+.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK 208 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK 208 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence 4677788899999999999999999999875 235566666655544
No 304
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.78 E-value=0.0006 Score=51.37 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.5
Q ss_pred CccEEEEEecCCChHHHHHHHHHhc
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
..+.++|+|..|+|||||++.|++.
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999975
No 305
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.77 E-value=0.00067 Score=48.37 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=20.0
Q ss_pred EEEEEecCCChHHHHHHHHHhc
Q psy7718 22 VTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.++++|..|+|||||++.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 5899999999999999999864
No 306
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.77 E-value=0.0013 Score=53.94 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=22.4
Q ss_pred cEEEEEecCCChHHHHHHHHHhcCC
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTEQH 45 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~~~ 45 (184)
.+++|+||+||||||+.+.|.....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999987654
No 307
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.77 E-value=0.00087 Score=52.54 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=21.4
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
+.++++|..|+|||||++.|++.
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 67899999999999999999975
No 308
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.77 E-value=0.00072 Score=50.34 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=20.7
Q ss_pred ccEEEEEecCCChHHHHHHHHHhc
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.-.++|+|..|+|||||++.+.+.
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 346899999999999999999864
No 309
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.76 E-value=0.00077 Score=48.00 Aligned_cols=22 Identities=14% Similarity=0.345 Sum_probs=20.0
Q ss_pred EEEEEecCCChHHHHHHHHHhc
Q psy7718 22 VTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.++++|+.|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 310
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.76 E-value=0.00084 Score=48.43 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=21.2
Q ss_pred ccEEEEEecCCChHHHHHHHHHhc
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
...++++|+.|+|||||++.+.+.
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999874
No 311
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.76 E-value=0.00078 Score=48.06 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=20.3
Q ss_pred EEEEEecCCChHHHHHHHHHhc
Q psy7718 22 VTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.++++|+.|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999975
No 312
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.76 E-value=0.00077 Score=48.15 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=20.6
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
-.++++|..|+|||||++.+.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36899999999999999999864
No 313
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.76 E-value=0.00098 Score=48.23 Aligned_cols=26 Identities=23% Similarity=0.164 Sum_probs=21.8
Q ss_pred cCccEEEEEecCCChHHHHHHHHHhc
Q psy7718 18 QPVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 18 ~~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.+.-.++++|..|+|||||++.+.+.
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 34457899999999999999999864
No 314
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.75 E-value=0.00078 Score=48.38 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.8
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
..++++|..|+|||||++.+.+.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 46899999999999999999864
No 315
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.75 E-value=0.0012 Score=52.74 Aligned_cols=26 Identities=23% Similarity=0.533 Sum_probs=23.5
Q ss_pred CccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
..+.++|+|..|+|||||++.|++..
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCC
Confidence 46899999999999999999999863
No 316
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.75 E-value=0.00084 Score=49.17 Aligned_cols=25 Identities=36% Similarity=0.425 Sum_probs=21.9
Q ss_pred CccEEEEEecCCChHHHHHHHHHhc
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
+...++++|++|+|||||++.+.+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999865
No 317
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.75 E-value=0.0015 Score=55.01 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=22.2
Q ss_pred ccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
...++|+|++|+|||||++.|++..
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CceEEEECCCCCCHHHHHHHHhCCc
Confidence 3579999999999999999999863
No 318
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.74 E-value=0.0008 Score=48.48 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.6
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
..++++|+.|+|||||++.+.+.
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999864
No 319
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.73 E-value=0.00085 Score=47.71 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=20.0
Q ss_pred EEEEEecCCChHHHHHHHHHhc
Q psy7718 22 VTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.++++|..|+|||||++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999864
No 320
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.73 E-value=0.00088 Score=48.84 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=20.2
Q ss_pred EEEEEecCCChHHHHHHHHHhc
Q psy7718 22 VTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.++++|..|+|||||++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5789999999999999999874
No 321
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.71 E-value=0.00084 Score=55.06 Aligned_cols=26 Identities=35% Similarity=0.556 Sum_probs=23.0
Q ss_pred cCccEEEEEecCCChHHHHHHHHHhc
Q psy7718 18 QPVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 18 ~~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.+...++++|++|+|||||++.|++.
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34668999999999999999999875
No 322
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.71 E-value=0.0011 Score=60.21 Aligned_cols=32 Identities=22% Similarity=0.312 Sum_probs=27.5
Q ss_pred ceecCccEEEEEecCCChHHHHHHHHHhcCCC
Q psy7718 15 AELQPVPVTIITGYLGAGKTTLLNYILTEQHD 46 (184)
Q Consensus 15 l~v~~~~vi~i~G~~GsGKTTll~~L~~~~~~ 46 (184)
|.+.+++.++|.|++|+||||+++.|.+....
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 35677889999999999999999999987543
No 323
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.71 E-value=0.00069 Score=49.19 Aligned_cols=25 Identities=36% Similarity=0.393 Sum_probs=21.6
Q ss_pred cCccEEEEEecCCChHHHHHHHHHh
Q psy7718 18 QPVPVTIITGYLGAGKTTLLNYILT 42 (184)
Q Consensus 18 ~~~~vi~i~G~~GsGKTTll~~L~~ 42 (184)
++...++++|+.|+|||||++.+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3455799999999999999999984
No 324
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.70 E-value=0.00097 Score=47.97 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=20.0
Q ss_pred EEEEEecCCChHHHHHHHHHhc
Q psy7718 22 VTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.++|+|+.|+|||||++.+++.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 325
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.70 E-value=0.0012 Score=50.67 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=25.9
Q ss_pred ecCccEEEEEecCCChHHHHHHHHHhcCCC
Q psy7718 17 LQPVPVTIITGYLGAGKTTLLNYILTEQHD 46 (184)
Q Consensus 17 v~~~~vi~i~G~~GsGKTTll~~L~~~~~~ 46 (184)
|.+|..+.|.|+.||||||.++.|......
T Consensus 2 m~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 2 MGRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 457889999999999999999999876543
No 326
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.70 E-value=0.00089 Score=47.85 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHHhc
Q psy7718 22 VTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.++++|..|+|||||++.+.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5789999999999999999753
No 327
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.70 E-value=0.001 Score=50.43 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=21.8
Q ss_pred ccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
+..++|.|+.||||||+.+.|....
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998754
No 328
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.67 E-value=0.00099 Score=47.43 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=20.0
Q ss_pred EEEEEecCCChHHHHHHHHHhc
Q psy7718 22 VTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.++++|..|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999999863
No 329
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.67 E-value=0.00081 Score=48.49 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.2
Q ss_pred ccEEEEEecCCChHHHHHHHHHhc
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
...++++|..|+|||||++.+.+.
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999864
No 330
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.67 E-value=0.002 Score=47.91 Aligned_cols=37 Identities=35% Similarity=0.334 Sum_probs=26.1
Q ss_pred CccEEEEEecCCChHHHHHHHHHhc--CCCCeEEEEecc
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTE--QHDKKIAVILNE 55 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~--~~~~~~~vi~~~ 55 (184)
++.++.++|+.|+||||++-.++.. ..+.++.++...
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~ 40 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPK 40 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 3679999999999999998555543 244555555433
No 331
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.67 E-value=0.0012 Score=54.06 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=25.8
Q ss_pred CccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEe
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVIL 53 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~ 53 (184)
++++++|+||.|||||||...|+.... +.|+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~---~eiIs 70 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP---LEVIN 70 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC---EEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC---CcEEc
Confidence 356999999999999999999987643 45554
No 332
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.67 E-value=0.00056 Score=57.98 Aligned_cols=50 Identities=18% Similarity=0.226 Sum_probs=38.7
Q ss_pred CCCccccceecCccEEEEEecCCChHHHHHHHHHhcC---CCCeEEEEecccC
Q psy7718 8 EVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQ---HDKKIAVILNEFG 57 (184)
Q Consensus 8 ~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~---~~~~~~vi~~~~~ 57 (184)
+.|+.+..-+.+|.+++|.|++|+|||||+..++... .+.++.++..+..
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s 243 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS 243 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 4567777678999999999999999999999998753 2345666665543
No 333
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.66 E-value=0.0011 Score=49.98 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=20.3
Q ss_pred EEEEEecCCChHHHHHHHHHhcC
Q psy7718 22 VTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
.++|+|+.||||||+.+.|....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998743
No 334
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.65 E-value=0.0011 Score=50.71 Aligned_cols=23 Identities=30% Similarity=0.284 Sum_probs=20.4
Q ss_pred EEEEEecCCChHHHHHHHHHhcC
Q psy7718 22 VTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
.++|.|+.||||||+.+.|....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998653
No 335
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.65 E-value=0.001 Score=48.38 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=20.2
Q ss_pred EEEEEecCCChHHHHHHHHHhc
Q psy7718 22 VTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.++++|..|+|||||++.+.+.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 336
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.64 E-value=0.001 Score=48.40 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=20.7
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
-.++|+|..|+|||||++.+.+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999964
No 337
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.63 E-value=0.0011 Score=50.90 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=24.8
Q ss_pred eecCccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 16 ELQPVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 16 ~v~~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
.+++.+++.|.||.||||+|.-+.|....
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35667899999999999999999998754
No 338
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.63 E-value=0.0014 Score=50.53 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=22.9
Q ss_pred ccEEEEEecCCChHHHHHHHHHhcCC
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTEQH 45 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~~~ 45 (184)
+..++|.|..||||||+.+.|.....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999987654
No 339
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.62 E-value=0.0013 Score=48.10 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=20.9
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
-.++|+|..|+|||||++.|++.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999975
No 340
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.61 E-value=0.0012 Score=47.99 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=21.2
Q ss_pred ccEEEEEecCCChHHHHHHHHHhc
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
...++|+|+.|+|||||++.+.+.
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 347899999999999999999864
No 341
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.61 E-value=0.0011 Score=47.59 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.3
Q ss_pred ccEEEEEecCCChHHHHHHHHHhc
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
...++++|..|+|||||++.+.+.
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 347899999999999999999864
No 342
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.60 E-value=0.0012 Score=47.89 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=20.7
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
-.++++|..|+|||||++.+.+.
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 46899999999999999999864
No 343
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.60 E-value=0.00051 Score=56.63 Aligned_cols=21 Identities=33% Similarity=0.594 Sum_probs=19.1
Q ss_pred EEEEecCCChHHHHHHHHHhc
Q psy7718 23 TIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 23 i~i~G~~GsGKTTll~~L~~~ 43 (184)
++|+|++|+|||||++.|.+.
T Consensus 40 I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 40 LMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp EEECCCTTSCHHHHHHHHTTC
T ss_pred EEEEcCCCCCHHHHHHHHhCC
Confidence 599999999999999998764
No 344
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.59 E-value=0.0013 Score=47.47 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.5
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
-.++++|..|+|||||++.+.+.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 345
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.58 E-value=0.0019 Score=52.47 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=22.8
Q ss_pred CccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
+.++++|+||+|||||||...|+...
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhC
Confidence 35789999999999999999998764
No 346
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.58 E-value=0.0012 Score=48.28 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=20.6
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
-.++++|..|+|||||++.+++.
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36899999999999999999864
No 347
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.58 E-value=0.0013 Score=46.80 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHHhc
Q psy7718 22 VTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.++++|..|+|||||++.+.+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999863
No 348
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.57 E-value=0.0015 Score=49.47 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=22.4
Q ss_pred CccEEEEEecCCChHHHHHHHHHhc
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
+++.+.|.|+.|+||||+++.+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999875
No 349
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.56 E-value=0.001 Score=56.88 Aligned_cols=33 Identities=24% Similarity=0.291 Sum_probs=26.5
Q ss_pred CccccceecCccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 10 PDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 10 l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
++++++.++++ +.|.||+|+||||+++.+.+..
T Consensus 41 ~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 41 FNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp HHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred HhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence 44555666655 8899999999999999999864
No 350
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.56 E-value=0.0013 Score=47.57 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=20.2
Q ss_pred EEEEEecCCChHHHHHHHHHhc
Q psy7718 22 VTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.++++|..|+|||||++.+.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 351
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.56 E-value=0.0013 Score=47.49 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=20.6
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
-.++++|..|+|||||++.+.+.
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999999864
No 352
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.56 E-value=0.0013 Score=48.82 Aligned_cols=24 Identities=38% Similarity=0.534 Sum_probs=21.3
Q ss_pred ccEEEEEecCCChHHHHHHHHHhc
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.-.++|+|+.|+|||||++.+++.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346899999999999999999874
No 353
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.56 E-value=0.0014 Score=50.00 Aligned_cols=27 Identities=26% Similarity=0.301 Sum_probs=23.1
Q ss_pred cCccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 18 QPVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 18 ~~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
.++..+.|.|+.||||||+++.|....
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999998643
No 354
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.55 E-value=0.0016 Score=49.95 Aligned_cols=26 Identities=23% Similarity=0.170 Sum_probs=22.6
Q ss_pred CccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
++..+.|.|+.||||||+.+.|....
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998654
No 355
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.55 E-value=0.0015 Score=48.44 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=22.0
Q ss_pred CccEEEEEecCCChHHHHHHHHHhc
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
+...++|+|..|+|||||++.+.+.
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 4457999999999999999999974
No 356
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.54 E-value=0.0013 Score=52.10 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=20.8
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.++.|+|++||||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999874
No 357
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.54 E-value=0.0013 Score=52.05 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=21.1
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
..++++|.+|+|||||++.|++.
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999999974
No 358
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.54 E-value=0.0013 Score=48.59 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.1
Q ss_pred ccEEEEEecCCChHHHHHHHHHhc
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
...++|+|..|+|||||++.+.+.
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999864
No 359
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.54 E-value=0.0016 Score=50.60 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=21.4
Q ss_pred ccEEEEEecCCChHHHHHHHHHhc
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
...++|+|..|+|||||++.|++.
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999974
No 360
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.53 E-value=0.0014 Score=48.23 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=20.7
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
-.++|+|..|+|||||++.+.+.
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 36899999999999999999864
No 361
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.53 E-value=0.00096 Score=52.14 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=24.4
Q ss_pred cCccEEEEEecCCChHHHHHHHHHhcCCC
Q psy7718 18 QPVPVTIITGYLGAGKTTLLNYILTEQHD 46 (184)
Q Consensus 18 ~~~~vi~i~G~~GsGKTTll~~L~~~~~~ 46 (184)
.++..|+|.|+.||||||+.+.|.....+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~ 50 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCED 50 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 46779999999999999999999876543
No 362
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.53 E-value=0.0013 Score=48.29 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHHhc
Q psy7718 22 VTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.++|+|..|+|||||++.+++.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999988864
No 363
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.53 E-value=0.0015 Score=48.06 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=20.7
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
-.++++|..|+|||||++.+.+.
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 46899999999999999999873
No 364
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.52 E-value=0.0015 Score=47.73 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.5
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
-.++++|..|+|||||++.+.+.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35889999999999999999874
No 365
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.52 E-value=0.0018 Score=49.48 Aligned_cols=26 Identities=35% Similarity=0.422 Sum_probs=23.0
Q ss_pred CccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
+|..|.|.|+.||||||.++.|....
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999998753
No 366
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.51 E-value=0.0013 Score=51.05 Aligned_cols=23 Identities=39% Similarity=0.462 Sum_probs=21.0
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
-.++|+|..|+|||||++.|++.
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhCC
Confidence 46899999999999999999975
No 367
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.51 E-value=0.0018 Score=50.30 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=22.7
Q ss_pred CccEEEEEecCCChHHHHHHHHHhc
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
++.++.|.|+.||||||+++.|...
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5779999999999999999999864
No 368
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.51 E-value=0.0016 Score=53.09 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=22.3
Q ss_pred EEEEEecCCChHHHHHHHHHhcCCC
Q psy7718 22 VTIITGYLGAGKTTLLNYILTEQHD 46 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~~~~ 46 (184)
.+.|+|++|+||||+++.+.+...+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~ 70 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKD 70 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhh
Confidence 8999999999999999999986543
No 369
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.50 E-value=0.0016 Score=47.47 Aligned_cols=26 Identities=31% Similarity=0.303 Sum_probs=22.0
Q ss_pred cCccEEEEEecCCChHHHHHHHHHhc
Q psy7718 18 QPVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 18 ~~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
++.-.++++|..|+|||||++.+.+.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34557899999999999999999864
No 370
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.50 E-value=0.0019 Score=51.02 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=23.1
Q ss_pred CccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
..+.++|+|..|+|||||++.|++..
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 45789999999999999999999853
No 371
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.49 E-value=0.0019 Score=46.73 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=21.6
Q ss_pred CccEEEEEecCCChHHHHHHHHHhc
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
....+.|.|+.|+||||+++.+...
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3456899999999999999999875
No 372
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.49 E-value=0.0016 Score=48.30 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=21.6
Q ss_pred cCccEEEEEecCCChHHHHHHHHHhc
Q psy7718 18 QPVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 18 ~~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
++.-.++|+|..|+|||||++.+.+.
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 34557999999999999999999874
No 373
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.48 E-value=0.0015 Score=47.87 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.9
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
-.++|+|..|+|||||++.+.+.
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999974
No 374
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.47 E-value=0.0014 Score=48.15 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=22.0
Q ss_pred CccEEEEEecCCChHHHHHHHHHhc
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
+...++|+|..|+|||||++.+.+.
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3558999999999999999999864
No 375
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.47 E-value=0.0016 Score=47.30 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=20.2
Q ss_pred EEEEEecCCChHHHHHHHHHhc
Q psy7718 22 VTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.++|+|..|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 376
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.47 E-value=0.0017 Score=47.01 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.6
Q ss_pred ccEEEEEecCCChHHHHHHHHHh
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILT 42 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~ 42 (184)
...++++|..|+|||||++.+.+
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 34789999999999999999985
No 377
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.47 E-value=0.0017 Score=47.74 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=21.3
Q ss_pred cEEEEEecCCChHHHHHHHHHhcC
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
-.++|+|..|+|||||++.+.+..
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 368999999999999999999753
No 378
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.46 E-value=0.0017 Score=49.36 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=21.7
Q ss_pred ccEEEEEecCCChHHHHHHHHHhc
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
...++|+|..|+|||||++.+++.
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 379
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.46 E-value=0.0014 Score=47.28 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.6
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
-.++++|..|+|||||++.+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999874
No 380
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.46 E-value=0.0016 Score=47.72 Aligned_cols=23 Identities=26% Similarity=0.193 Sum_probs=20.7
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
-.++|+|..|+|||||++.+.+.
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 47899999999999999999864
No 381
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.46 E-value=0.0021 Score=46.99 Aligned_cols=25 Identities=36% Similarity=0.351 Sum_probs=21.7
Q ss_pred CccEEEEEecCCChHHHHHHHHHhc
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
+...++++|..|+|||||++.+.+.
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999999953
No 382
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.45 E-value=0.0017 Score=48.22 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.8
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
-.++|+|..|+|||||++.+.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 383
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.45 E-value=0.0017 Score=52.57 Aligned_cols=27 Identities=26% Similarity=0.517 Sum_probs=23.3
Q ss_pred cCccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 18 QPVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 18 ~~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
..+..+.|.|++|+||||+++.+.+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999998753
No 384
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.44 E-value=0.002 Score=49.72 Aligned_cols=27 Identities=22% Similarity=0.137 Sum_probs=23.2
Q ss_pred ecCccEEEEEecCCChHHHHHHHHHhc
Q psy7718 17 LQPVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 17 v~~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
-.++..+.|.|+.||||||+++.|...
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345789999999999999999999864
No 385
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.43 E-value=0.0017 Score=48.05 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=20.8
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
-.++|+|..|+|||||++.+.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 386
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.43 E-value=0.0017 Score=46.99 Aligned_cols=22 Identities=32% Similarity=0.312 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHHhc
Q psy7718 22 VTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.++++|..|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 387
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.40 E-value=0.002 Score=48.11 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.0
Q ss_pred ccEEEEEecCCChHHHHHHHHHhc
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
...++++|..|+|||||++.+.+.
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999864
No 388
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.40 E-value=0.0018 Score=47.46 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=21.3
Q ss_pred ccEEEEEecCCChHHHHHHHHHhc
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.-.++|+|..|+|||||++.+.+.
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 347899999999999999999874
No 389
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.39 E-value=0.002 Score=47.06 Aligned_cols=23 Identities=30% Similarity=0.290 Sum_probs=20.4
Q ss_pred EEEEEecCCChHHHHHHHHHhcC
Q psy7718 22 VTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
.++|+|..|+|||||++.+.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 68999999999999999888753
No 390
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.39 E-value=0.0018 Score=47.60 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=20.3
Q ss_pred EEEEEecCCChHHHHHHHHHhc
Q psy7718 22 VTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.++|+|..|+|||||++.+.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 391
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.38 E-value=0.0021 Score=46.83 Aligned_cols=23 Identities=39% Similarity=0.411 Sum_probs=20.8
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
-.++++|..|+|||||++.+.+.
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 392
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.38 E-value=0.002 Score=51.72 Aligned_cols=23 Identities=39% Similarity=0.471 Sum_probs=21.1
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
..++|+|.+|+|||||++.|++.
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999974
No 393
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.38 E-value=0.0019 Score=47.38 Aligned_cols=24 Identities=29% Similarity=0.301 Sum_probs=21.0
Q ss_pred ccEEEEEecCCChHHHHHHHHHhc
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.-.++|+|..|+|||||++.+.+.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999999864
No 394
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.38 E-value=0.0014 Score=50.35 Aligned_cols=26 Identities=35% Similarity=0.479 Sum_probs=21.7
Q ss_pred ecCccEEEEEecCCChHHHHHHHHHh
Q psy7718 17 LQPVPVTIITGYLGAGKTTLLNYILT 42 (184)
Q Consensus 17 v~~~~vi~i~G~~GsGKTTll~~L~~ 42 (184)
+.+++.+++.|++||||||++..++.
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 34578999999999999998877653
No 395
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.37 E-value=0.0022 Score=52.12 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=22.1
Q ss_pred cEEEEEecCCChHHHHHHHHHhcCC
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTEQH 45 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~~~ 45 (184)
++++|+||+||||||+.+.|.....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4899999999999999999987643
No 396
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.37 E-value=0.0022 Score=47.26 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=20.7
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
-.++++|..|+|||||++.+.+.
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999864
No 397
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.37 E-value=0.0014 Score=52.74 Aligned_cols=36 Identities=22% Similarity=0.351 Sum_probs=26.8
Q ss_pred CCCccccceecCc--cEEEEEecCCChHHHHHHHHHhc
Q psy7718 8 EVPDLVPAELQPV--PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 8 ~~l~~v~l~v~~~--~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.+++.+.-.+..+ +.+.|.|++|+||||+++.+.+.
T Consensus 44 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 44 HAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp TTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3444444444444 55999999999999999999875
No 398
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.37 E-value=0.002 Score=47.14 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.3
Q ss_pred ccEEEEEecCCChHHHHHHHHHhc
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.-.++|+|..|+|||||++.+.+.
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 347899999999999999999874
No 399
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.36 E-value=0.0013 Score=48.89 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=20.0
Q ss_pred cEEEEEecCCChHHHHHHHHHh
Q psy7718 21 PVTIITGYLGAGKTTLLNYILT 42 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~ 42 (184)
..++|+|..|+|||||++.+.+
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999974
No 400
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.36 E-value=0.0016 Score=48.01 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHHhc
Q psy7718 22 VTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.++|+|..|+|||||++.+.+.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 401
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.36 E-value=0.0085 Score=49.29 Aligned_cols=38 Identities=29% Similarity=0.229 Sum_probs=29.2
Q ss_pred ecCccEEEEEecCCChHHHHHHHHHhcC--CCCeEEEEec
Q psy7718 17 LQPVPVTIITGYLGAGKTTLLNYILTEQ--HDKKIAVILN 54 (184)
Q Consensus 17 v~~~~vi~i~G~~GsGKTTll~~L~~~~--~~~~~~vi~~ 54 (184)
++++.++.|.|++|+|||||...++... .+.++.++..
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 6688999999999999999998887642 3445555543
No 402
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.34 E-value=0.0022 Score=51.55 Aligned_cols=23 Identities=39% Similarity=0.479 Sum_probs=21.1
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
-.++|+|..|+|||||++.|++.
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 37899999999999999999975
No 403
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.33 E-value=0.0025 Score=50.33 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=21.1
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
..++++|..|+|||||++.|++.
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999975
No 404
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.32 E-value=0.0021 Score=47.23 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=20.4
Q ss_pred EEEEEecCCChHHHHHHHHHhc
Q psy7718 22 VTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.++++|..|+|||||++.+.+.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999974
No 405
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.31 E-value=0.0022 Score=47.12 Aligned_cols=22 Identities=41% Similarity=0.440 Sum_probs=20.1
Q ss_pred EEEEEecCCChHHHHHHHHHhc
Q psy7718 22 VTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.++++|..|+|||||++.+.+.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 6899999999999999999864
No 406
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.30 E-value=0.0024 Score=47.93 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.8
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
-.++++|..|+|||||++.+.+.
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999974
No 407
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.30 E-value=0.0019 Score=50.80 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHHhc
Q psy7718 22 VTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.++++|..|+|||||++.|.+.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999998764
No 408
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.29 E-value=0.0022 Score=48.36 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=21.7
Q ss_pred ccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
+.+++|+|+.||||||+.+.|....
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3579999999999999999998753
No 409
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.29 E-value=0.0026 Score=47.62 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=20.7
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
..+.|.|+.|+||||+++.+...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999864
No 410
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.28 E-value=0.0018 Score=47.43 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=21.2
Q ss_pred ccEEEEEecCCChHHHHHHHHHhc
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
...++++|..|+|||||++.+.+.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999999864
No 411
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.27 E-value=0.0025 Score=47.33 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=21.4
Q ss_pred CccEEEEEecCCChHHHHHHHHHhc
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
+...++|+|..|+|||||++.+.+.
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457899999999999999999864
No 412
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.27 E-value=0.0024 Score=47.32 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=20.2
Q ss_pred cEEEEEecCCChHHHHHHHHHh
Q psy7718 21 PVTIITGYLGAGKTTLLNYILT 42 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~ 42 (184)
-.++|+|..|+|||||++.+.+
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999986
No 413
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.26 E-value=0.0033 Score=47.67 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=21.7
Q ss_pred ccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
+..|+|-|..||||||.++.|....
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH
Confidence 4678999999999999999998754
No 414
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.25 E-value=0.0029 Score=47.09 Aligned_cols=24 Identities=38% Similarity=0.434 Sum_probs=21.4
Q ss_pred cEEEEEecCCChHHHHHHHHHhcC
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
..+.|.|+.|+||||+++.+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 678999999999999999998753
No 415
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.25 E-value=0.0028 Score=50.02 Aligned_cols=27 Identities=33% Similarity=0.380 Sum_probs=23.4
Q ss_pred CccEEEEEecCCChHHHHHHHHHhcCC
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTEQH 45 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~~~ 45 (184)
+..-+.|.|++|+||||+++.+.+...
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999998653
No 416
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.25 E-value=0.0023 Score=47.94 Aligned_cols=23 Identities=30% Similarity=0.291 Sum_probs=20.8
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
-.++|+|..|+|||||++.+.+.
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999974
No 417
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.25 E-value=0.0022 Score=50.24 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.9
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
..++++|..|+|||||++.|++.
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999999974
No 418
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.23 E-value=0.0025 Score=47.08 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=20.7
Q ss_pred ccEEEEEecCCChHHHHHHHHHhc
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.-.++++|..|+|||||++.+.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 447899999999999999999864
No 419
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.22 E-value=0.0027 Score=47.72 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHHhc
Q psy7718 22 VTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.++++|..|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999863
No 420
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.21 E-value=0.0062 Score=49.17 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=24.6
Q ss_pred ecCccEEEEEecCCChHHHHHHHHHhc
Q psy7718 17 LQPVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 17 v~~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
++++.++.|.|++|+|||||...++..
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 678999999999999999999998864
No 421
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.20 E-value=0.003 Score=51.58 Aligned_cols=27 Identities=22% Similarity=0.333 Sum_probs=24.7
Q ss_pred ecCccEEEEEecCCChHHHHHHHHHhc
Q psy7718 17 LQPVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 17 v~~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
++++.++.|.|++|+|||||...++..
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 678899999999999999999999874
No 422
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.19 E-value=0.0025 Score=52.78 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=20.1
Q ss_pred EEEEEecCCChHHHHHHHHHhc
Q psy7718 22 VTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.++|+|++|+|||||++.|++.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999874
No 423
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.19 E-value=0.003 Score=46.38 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=20.3
Q ss_pred EEEEEecCCChHHHHHHHHHhc
Q psy7718 22 VTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.++++|..|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 424
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.18 E-value=0.003 Score=46.66 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=21.0
Q ss_pred ccEEEEEecCCChHHHHHHHHHhc
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.-.++++|..|+|||||++.+.+.
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 447999999999999999999753
No 425
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.18 E-value=0.003 Score=46.85 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=21.7
Q ss_pred eecCcc-EEEEEecCCChHHHHHHHHHhc
Q psy7718 16 ELQPVP-VTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 16 ~v~~~~-vi~i~G~~GsGKTTll~~L~~~ 43 (184)
+|...+ .++++|..|+|||||++.+.+.
T Consensus 20 ~m~~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 20 HMAAIRKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHhC
Confidence 344433 5899999999999999999874
No 426
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.17 E-value=0.0026 Score=45.96 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=21.6
Q ss_pred ccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
...+.|.|+.|+||||+++.+....
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4567999999999999999998753
No 427
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.17 E-value=0.0033 Score=50.93 Aligned_cols=25 Identities=20% Similarity=0.145 Sum_probs=22.2
Q ss_pred ccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
.++++|+||+|||||||...|+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4689999999999999999998764
No 428
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.17 E-value=0.0046 Score=48.44 Aligned_cols=28 Identities=32% Similarity=0.438 Sum_probs=24.0
Q ss_pred cCccEEEEEecCCChHHHHHHHHHhcCC
Q psy7718 18 QPVPVTIITGYLGAGKTTLLNYILTEQH 45 (184)
Q Consensus 18 ~~~~vi~i~G~~GsGKTTll~~L~~~~~ 45 (184)
....-+.|.|+.|+||||+++.+.....
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4566799999999999999999987653
No 429
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.15 E-value=0.0051 Score=46.19 Aligned_cols=37 Identities=24% Similarity=0.210 Sum_probs=29.1
Q ss_pred cCccEEEEEecCCChHHHHHHHHHhcC--CCCeEEEEec
Q psy7718 18 QPVPVTIITGYLGAGKTTLLNYILTEQ--HDKKIAVILN 54 (184)
Q Consensus 18 ~~~~vi~i~G~~GsGKTTll~~L~~~~--~~~~~~vi~~ 54 (184)
.++.++.++|+.||||||.+-.++... .+.++.++..
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~ 44 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKP 44 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 457899999999999999887776543 5667777753
No 430
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.15 E-value=0.0037 Score=46.57 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=21.1
Q ss_pred ccEEEEEecCCChHHHHHHHHHhc
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.-.++++|..|+|||||++.+.+.
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999864
No 431
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=96.14 E-value=0.0018 Score=53.11 Aligned_cols=33 Identities=24% Similarity=0.391 Sum_probs=27.6
Q ss_pred ccccceecCccEEEEEecCCChHHHHHHHHHhc
Q psy7718 11 DLVPAELQPVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 11 ~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
..+.++++-.+.++|+|+.++|||||++.|.+.
T Consensus 149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 345566777788999999999999999999864
No 432
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.13 E-value=0.0041 Score=45.92 Aligned_cols=24 Identities=17% Similarity=0.452 Sum_probs=21.1
Q ss_pred ccEEEEEecCCChHHHHHHHHHhc
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
...++++|..|+|||||++.+.+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 347999999999999999998874
No 433
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.12 E-value=0.0032 Score=50.99 Aligned_cols=35 Identities=20% Similarity=0.123 Sum_probs=28.6
Q ss_pred CCCccccceecCccEEEEEecCCChHHHHHHHHHhc
Q psy7718 8 EVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 8 ~~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
..+++..+.+ .|.-+.|+|++|+||||+...|++.
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 3556666666 5778999999999999999999874
No 434
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.12 E-value=0.0017 Score=47.15 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=9.8
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
-.++|+|..|+|||||++.+.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999854
No 435
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.11 E-value=0.0034 Score=46.68 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=20.7
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
-.++|+|..|+|||||++.+.+.
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 46899999999999999999864
No 436
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.08 E-value=0.0036 Score=49.57 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=21.6
Q ss_pred cEEEEEecCCChHHHHHHHHHhcC
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
..+.|.|++|+||||+.+.+....
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 478999999999999999999864
No 437
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.08 E-value=0.0038 Score=48.76 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=21.0
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
-.++++|..|+|||||++.|++.
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999975
No 438
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.08 E-value=0.0036 Score=46.68 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=20.4
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
-.++++|..|+|||||++.+...
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999999863
No 439
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.07 E-value=0.0038 Score=52.30 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=22.5
Q ss_pred ccEEEEEecCCChHHHHHHHHHhcCC
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTEQH 45 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~~~ 45 (184)
.++++|+||+|||||||...|+....
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC
Confidence 46899999999999999999987543
No 440
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.04 E-value=0.0038 Score=47.41 Aligned_cols=34 Identities=21% Similarity=0.130 Sum_probs=26.4
Q ss_pred CCccccceecCccEEEEEecCCChHHHHHHHHHhc
Q psy7718 9 VPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 9 ~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.+....+.+ .+..++|+|++|+|||||...|+..
T Consensus 24 ~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 24 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 444544444 3678999999999999999999864
No 441
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.04 E-value=0.0028 Score=46.33 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=21.5
Q ss_pred cCccEEEEEecCCChHHHHHHHHHh
Q psy7718 18 QPVPVTIITGYLGAGKTTLLNYILT 42 (184)
Q Consensus 18 ~~~~vi~i~G~~GsGKTTll~~L~~ 42 (184)
++...++++|..|+|||||++.+.+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHc
Confidence 3455799999999999999999974
No 442
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=96.04 E-value=0.0041 Score=48.75 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.3
Q ss_pred ccEEEEEecCCChHHHHHHHHHhc
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
...++++|..|+|||||++.|++.
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 347899999999999999999974
No 443
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.03 E-value=0.0039 Score=51.52 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=20.9
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
..++|+|.+|+|||||++.|++.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999999974
No 444
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.01 E-value=0.0031 Score=53.35 Aligned_cols=24 Identities=42% Similarity=0.576 Sum_probs=22.1
Q ss_pred ccEEEEEecCCChHHHHHHHHHhc
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.+.++|+|.+|+|||||++.|++.
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 579999999999999999999874
No 445
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.99 E-value=0.0036 Score=50.17 Aligned_cols=25 Identities=36% Similarity=0.396 Sum_probs=21.9
Q ss_pred ccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
+..+.|.|++|+||||+++.+....
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4578999999999999999998753
No 446
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.98 E-value=0.0047 Score=47.56 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=22.7
Q ss_pred cCccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 18 QPVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 18 ~~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
....-+.|.|+.|+||||+.+.+....
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344568899999999999999998754
No 447
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.98 E-value=0.0068 Score=46.65 Aligned_cols=39 Identities=31% Similarity=0.184 Sum_probs=28.0
Q ss_pred cCccEEEEEecCCChHHHHHHHHHhcC--CCCeEEEEeccc
Q psy7718 18 QPVPVTIITGYLGAGKTTLLNYILTEQ--HDKKIAVILNEF 56 (184)
Q Consensus 18 ~~~~vi~i~G~~GsGKTTll~~L~~~~--~~~~~~vi~~~~ 56 (184)
.++.++.++|+.|+||||++-.++... .+.++.++....
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~ 50 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKI 50 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEecc
Confidence 357899999999999999887766542 455666664333
No 448
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.92 E-value=0.0043 Score=46.69 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=20.6
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
-.++|+|..|+|||||++.+.+.
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 36899999999999999999864
No 449
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.88 E-value=0.005 Score=46.71 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.3
Q ss_pred EEEEEecCCChHHHHHHHHHhcC
Q psy7718 22 VTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
++.|.||.||||+|.-+.|....
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998754
No 450
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.88 E-value=0.0041 Score=46.97 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.2
Q ss_pred ccEEEEEecCCChHHHHHHHHHhc
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.-.++|+|..|+|||||++.+.+.
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 346899999999999999999874
No 451
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.87 E-value=0.0054 Score=48.25 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=21.6
Q ss_pred cEEEEEecCCChHHHHHHHHHhcC
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
..++++|.+|+|||||++.|.+..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred hheEEeCCCCCCHHHHHHHHhccc
Confidence 478999999999999999999754
No 452
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.87 E-value=0.0045 Score=46.93 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.5
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
-.++|+|..|+|||||++.+.+.
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999863
No 453
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.85 E-value=0.0051 Score=45.48 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.4
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
+.+.|.|+.|+||||+++.+...
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999864
No 454
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=95.83 E-value=0.0048 Score=50.37 Aligned_cols=29 Identities=17% Similarity=0.268 Sum_probs=24.6
Q ss_pred ecCccEEEEEecCCChHHHHHHHHHhcCC
Q psy7718 17 LQPVPVTIITGYLGAGKTTLLNYILTEQH 45 (184)
Q Consensus 17 v~~~~vi~i~G~~GsGKTTll~~L~~~~~ 45 (184)
..++..|.|-|+-||||||+++.|.....
T Consensus 4 ~~~~~fI~~EG~dGaGKTT~~~~La~~L~ 32 (334)
T 1p6x_A 4 MVTIVRIYLDGVYGIGKSTTGRVMASAAS 32 (334)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34567899999999999999999987643
No 455
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=95.82 E-value=0.0017 Score=47.91 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=4.9
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
-.++|+|..|+|||||++.+.+.
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999999865
No 456
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=95.81 E-value=0.0018 Score=48.56 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHHhc
Q psy7718 22 VTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.++|+|..|+|||||++.+++.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999999853
No 457
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.77 E-value=0.0058 Score=49.98 Aligned_cols=50 Identities=22% Similarity=0.263 Sum_probs=37.2
Q ss_pred CCccccceecCccEEEEEecCCChHHHHHHHHHhc--CCCCeEEEEecccCC
Q psy7718 9 VPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTE--QHDKKIAVILNEFGE 58 (184)
Q Consensus 9 ~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~--~~~~~~~vi~~~~~~ 58 (184)
-||.+.--+.+|.++.|.|++|+|||||...++.. ..+.++.++.-|...
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~ 86 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSA 86 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCH
Confidence 44555445789999999999999999999888764 245666666655543
No 458
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.77 E-value=0.0068 Score=45.09 Aligned_cols=34 Identities=18% Similarity=0.070 Sum_probs=25.6
Q ss_pred CCccccceecCccEEEEEecCCChHHHHHHHHHhc
Q psy7718 9 VPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 9 ~l~~v~l~v~~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.+....+.+. +.-+.|+|++|+||||+...|+..
T Consensus 6 ~lHas~v~v~-G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 6 TWHANFLVID-KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEESEEEEET-TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEEEEC-CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3444444444 678999999999999999888863
No 459
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.77 E-value=0.0097 Score=45.67 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=26.1
Q ss_pred cCccEEEEEecCCChHHH-HHHHHHhc-CCCCeEEEEe
Q psy7718 18 QPVPVTIITGYLGAGKTT-LLNYILTE-QHDKKIAVIL 53 (184)
Q Consensus 18 ~~~~vi~i~G~~GsGKTT-ll~~L~~~-~~~~~~~vi~ 53 (184)
.+|.+..++|+.|||||| |++.+-.. ..+.++.++.
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~k 63 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFK 63 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEE
Confidence 458899999999999999 66776543 2455666554
No 460
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.76 E-value=0.033 Score=45.91 Aligned_cols=39 Identities=31% Similarity=0.236 Sum_probs=29.6
Q ss_pred ecCccEEEEEecCCChHHHHHHHHHhcC--CCCeEEEEecc
Q psy7718 17 LQPVPVTIITGYLGAGKTTLLNYILTEQ--HDKKIAVILNE 55 (184)
Q Consensus 17 v~~~~vi~i~G~~GsGKTTll~~L~~~~--~~~~~~vi~~~ 55 (184)
++++.++.|.|+.|+|||||...++... .+.++.++..+
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4678999999999999999998887542 34455555544
No 461
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.74 E-value=0.007 Score=46.06 Aligned_cols=40 Identities=20% Similarity=0.217 Sum_probs=29.3
Q ss_pred ecCccEEEEEecCCChHHHHHHHHHhc---CCCCeEEEEeccc
Q psy7718 17 LQPVPVTIITGYLGAGKTTLLNYILTE---QHDKKIAVILNEF 56 (184)
Q Consensus 17 v~~~~vi~i~G~~GsGKTTll~~L~~~---~~~~~~~vi~~~~ 56 (184)
+++|.++.|.|+.|+|||||.-.++.. ..+.++.++..+.
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~ 69 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccC
Confidence 678999999999999999998776532 2244555555443
No 462
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.71 E-value=0.0069 Score=48.64 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=24.1
Q ss_pred ecCccEEEEEecCCChHHHHHHHHHhc
Q psy7718 17 LQPVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 17 v~~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
++++.++.|.|++|+|||||...++..
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 567899999999999999999988853
No 463
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.69 E-value=0.0063 Score=53.77 Aligned_cols=26 Identities=31% Similarity=0.199 Sum_probs=22.7
Q ss_pred CccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
++.++.|+|++||||||+.+.|....
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998753
No 464
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.67 E-value=0.0064 Score=53.13 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=22.3
Q ss_pred CccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
++.++.|+|++||||||+.+.|....
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L 420 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTL 420 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998653
No 465
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.64 E-value=0.0081 Score=45.24 Aligned_cols=25 Identities=12% Similarity=0.134 Sum_probs=22.3
Q ss_pred ccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
.++|.|.|+.||||||+-+.|....
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHh
Confidence 4699999999999999999998753
No 466
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=95.62 E-value=0.0048 Score=50.41 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=22.3
Q ss_pred ccEEEEEecCCChHHHHHHHHHhc
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.+.++|+|..|+|||||++.|++.
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~ 54 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGR 54 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTS
T ss_pred CCeEEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999999999985
No 467
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.60 E-value=0.0057 Score=49.53 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=23.3
Q ss_pred cCccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 18 QPVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 18 ~~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
..+..+.|.|+.|+||||+++.+....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456689999999999999999998753
No 468
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=95.60 E-value=0.0035 Score=47.17 Aligned_cols=20 Identities=35% Similarity=0.483 Sum_probs=18.2
Q ss_pred EEEEEecCCChHHHHHHHHH
Q psy7718 22 VTIITGYLGAGKTTLLNYIL 41 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~ 41 (184)
.++++|..|+|||||++.++
T Consensus 17 ki~v~G~~~~GKSsli~~~~ 36 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHL 36 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999944
No 469
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=95.59 E-value=0.0088 Score=47.52 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.3
Q ss_pred cEEEEEecCCChHHHHHHHHHhcC
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
-.++++|.+|+|||||+|.|.+..
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred ceEEEEecCCCchHHHHHHHhcCc
Confidence 368999999999999999999753
No 470
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.53 E-value=0.0098 Score=47.00 Aligned_cols=24 Identities=29% Similarity=0.205 Sum_probs=20.7
Q ss_pred ccEEEEEecCCChHHHHHHHHHhc
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
+.-+.|.|+.|+|||++.+.+...
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 446899999999999999988764
No 471
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=95.52 E-value=0.0062 Score=51.19 Aligned_cols=23 Identities=43% Similarity=0.625 Sum_probs=21.5
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
+.++|+|..|+|||||++.|++.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999874
No 472
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.48 E-value=0.0083 Score=50.94 Aligned_cols=24 Identities=17% Similarity=0.247 Sum_probs=21.2
Q ss_pred ccEEEEEecCCChHHHHHHHHHhc
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
..++.++|+.||||||+.+.|...
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 447899999999999999999864
No 473
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.46 E-value=0.011 Score=47.07 Aligned_cols=26 Identities=19% Similarity=0.141 Sum_probs=21.9
Q ss_pred CccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
....+.|.||.|+|||++.+.++...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34467888999999999999999764
No 474
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=95.44 E-value=0.0079 Score=45.91 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.6
Q ss_pred ccEEEEEecCCChHHHHHHHHHh
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILT 42 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~ 42 (184)
.-.++|||.-||||||+.+.+..
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~ 31 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAA 31 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999875
No 475
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.42 E-value=0.017 Score=46.55 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=23.3
Q ss_pred CccEEEEEecCCChHHHHHHHHHhcCC
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTEQH 45 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~~~ 45 (184)
+..-+.|.||.|+|||++.+.+.....
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~ 70 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEAN 70 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcC
Confidence 446789999999999999999998753
No 476
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.39 E-value=0.011 Score=47.95 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=21.7
Q ss_pred ccEEEEEecCCChHHHHHHHHHhc
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
...+.|.|+.|+||||+++.+...
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999875
No 477
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=94.34 E-value=0.0028 Score=47.03 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=20.1
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
-.++++|..|+|||||++.+.+.
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 46899999999999999998753
No 478
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=95.34 E-value=0.0084 Score=49.73 Aligned_cols=32 Identities=22% Similarity=0.295 Sum_probs=25.5
Q ss_pred cccceecC--ccEEEEEecCCChHHHHHHHHHhc
Q psy7718 12 LVPAELQP--VPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 12 ~v~l~v~~--~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
+..|.+.+ ...++|+|+..+|||||+|.|++.
T Consensus 62 ~~~f~v~k~g~a~V~ivG~PNvGKSTL~n~Lt~~ 95 (376)
T 4a9a_A 62 GIGFDVARTGVASVGFVGFPSVGKSTLLSKLTGT 95 (376)
T ss_dssp SBTTTBCBCSSEEEEEECCCCHHHHHHHHHHHSB
T ss_pred CCCceEeecCCCeEEEECCCCCCHHHHHHHHhCC
Confidence 34566654 347999999999999999999974
No 479
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=95.32 E-value=0.01 Score=47.45 Aligned_cols=24 Identities=21% Similarity=0.438 Sum_probs=20.9
Q ss_pred ccEEEEEecCCChHHHHHHHHHhc
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
...++++|..|+|||||++.+.+.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999998764
No 480
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=95.31 E-value=0.008 Score=49.01 Aligned_cols=37 Identities=24% Similarity=0.234 Sum_probs=25.4
Q ss_pred CccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEeccc
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEF 56 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~ 56 (184)
++-.|.|-|.-||||||+++.|........ .+...|.
T Consensus 3 ~~~fI~~EG~dGsGKTT~~~~La~~L~~~g-v~~trEP 39 (331)
T 1e2k_A 3 TLLRVYIDGPHGMGKTTTTQLLVALGSRDD-IVYVPEP 39 (331)
T ss_dssp EEEEEEECSCTTSSHHHHHHHHTC----CC-EEEECCC
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHhhhCC-EEEEeCC
Confidence 456889999999999999999987643322 4444453
No 481
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.31 E-value=0.017 Score=42.99 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=19.5
Q ss_pred EEEEEecCCChHHHHHHHHHhc
Q psy7718 22 VTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~ 43 (184)
++.|+|..||||||+...++..
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS
T ss_pred CEEEECCCCCcHHHHHHHHHhc
Confidence 3789999999999999999865
No 482
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.30 E-value=0.0037 Score=48.59 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=19.8
Q ss_pred EEEEEecCCChHHHHHHHHHhc
Q psy7718 22 VTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~ 43 (184)
-+.|.|+.|+||||+.+.+...
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3789999999999999999875
No 483
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=95.30 E-value=0.23 Score=38.94 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=29.3
Q ss_pred CccEEEEEec-CCChHHHHHHHHHhc--CCCCeEEEEecccC
Q psy7718 19 PVPVTIITGY-LGAGKTTLLNYILTE--QHDKKIAVILNEFG 57 (184)
Q Consensus 19 ~~~vi~i~G~-~GsGKTTll~~L~~~--~~~~~~~vi~~~~~ 57 (184)
+.+++.|++. .|.||||+.-.|+.. ..+.++.++-.|..
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~ 122 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMR 122 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 4678999986 689999999888764 25667777765554
No 484
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.29 E-value=0.0091 Score=50.35 Aligned_cols=24 Identities=38% Similarity=0.335 Sum_probs=21.3
Q ss_pred ccEEEEEecCCChHHHHHHHHHhc
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
..-+.|.|++|+|||||++.+...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999875
No 485
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.28 E-value=0.011 Score=46.08 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=22.3
Q ss_pred CccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
+..-+.|.|+.|+||||+.+.+....
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 44578899999999999999998753
No 486
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.26 E-value=0.01 Score=49.86 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.8
Q ss_pred cEEEEEecCCChHHHHHHHHHhc
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
|.++|+|..++|||||+++|++.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~ 24 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKK 24 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999864
No 487
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.26 E-value=0.0082 Score=51.77 Aligned_cols=27 Identities=11% Similarity=0.057 Sum_probs=23.4
Q ss_pred cCccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 18 QPVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 18 ~~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
+++.++.|+|++||||||+-+.|....
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHH
Confidence 356689999999999999999998754
No 488
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=95.26 E-value=0.17 Score=38.17 Aligned_cols=39 Identities=13% Similarity=0.043 Sum_probs=28.5
Q ss_pred CccEEEEEec-CCChHHHHHHHHHhc--CC-CCeEEEEecccC
Q psy7718 19 PVPVTIITGY-LGAGKTTLLNYILTE--QH-DKKIAVILNEFG 57 (184)
Q Consensus 19 ~~~vi~i~G~-~GsGKTTll~~L~~~--~~-~~~~~vi~~~~~ 57 (184)
++++++|++. .|.||||+.-.|+.. .. +.++.++-.|..
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLP 45 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTT
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCC
Confidence 4678888764 789999999888764 23 667777765554
No 489
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=95.25 E-value=0.01 Score=49.50 Aligned_cols=22 Identities=18% Similarity=0.154 Sum_probs=19.5
Q ss_pred EEEEEecCCChHHHHHHHHHhc
Q psy7718 22 VTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 22 vi~i~G~~GsGKTTll~~L~~~ 43 (184)
.++|+|..++|||||++.|++.
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~ 23 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLV 23 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4789999999999999999874
No 490
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.25 E-value=0.012 Score=46.97 Aligned_cols=25 Identities=36% Similarity=0.632 Sum_probs=22.6
Q ss_pred ccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
++++.|.|+.|+|||||++.+....
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHc
Confidence 4799999999999999999998764
No 491
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.23 E-value=0.012 Score=46.88 Aligned_cols=24 Identities=25% Similarity=0.571 Sum_probs=21.9
Q ss_pred cEEEEEecCCChHHHHHHHHHhcC
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
+++.|.|+.|+|||||++.+....
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHhc
Confidence 699999999999999999998754
No 492
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.17 E-value=0.012 Score=46.28 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=21.8
Q ss_pred ccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
..-+.|.|+.|+|||++.+.+....
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999998765
No 493
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=95.17 E-value=0.012 Score=48.83 Aligned_cols=37 Identities=24% Similarity=0.234 Sum_probs=25.4
Q ss_pred CccEEEEEecCCChHHHHHHHHHhcCCCCeEEEEeccc
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEF 56 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~~~~~~~~vi~~~~ 56 (184)
++..|.|-|.-||||||+++.|........ .+...|.
T Consensus 48 ~~~fIt~EG~dGsGKTT~~~~Lae~L~~~g-vv~trEP 84 (376)
T 1of1_A 48 TLLRVYIDGPHGMGKTTTTQLLVALGSRDD-IVYVPEP 84 (376)
T ss_dssp EEEEEEECSSTTSSHHHHHHHHHC----CC-EEEECCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhhhCC-EEEEeCC
Confidence 455799999999999999999987654322 4444453
No 494
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.16 E-value=0.0052 Score=55.76 Aligned_cols=31 Identities=29% Similarity=0.312 Sum_probs=27.0
Q ss_pred cceecCccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 14 PAELQPVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 14 ~l~v~~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
++.+.+++.++|.||+|+||||+.+.+++..
T Consensus 505 ~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred hcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 4556778889999999999999999999864
No 495
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=95.15 E-value=0.011 Score=51.94 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=22.6
Q ss_pred CccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
+..+++|+|+.|+|||||+|.|++..
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 34578999999999999999999853
No 496
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.14 E-value=0.013 Score=50.67 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=21.6
Q ss_pred CccEEEEEecCCChHHHHHHHHHhc
Q psy7718 19 PVPVTIITGYLGAGKTTLLNYILTE 43 (184)
Q Consensus 19 ~~~vi~i~G~~GsGKTTll~~L~~~ 43 (184)
...++.++|++||||||+-+.|...
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~ 58 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRY 58 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999764
No 497
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.11 E-value=0.013 Score=41.39 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=21.1
Q ss_pred ccEEEEEecCCChHHHHHHHHHhcC
Q psy7718 20 VPVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 20 ~~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
..-+.|.|+.|+|||++.+.+....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 3457899999999999999998753
No 498
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=95.10 E-value=0.36 Score=38.29 Aligned_cols=39 Identities=26% Similarity=0.317 Sum_probs=29.5
Q ss_pred CccEEEEEec-CCChHHHHHHHHHhc--CCCCeEEEEecccC
Q psy7718 19 PVPVTIITGY-LGAGKTTLLNYILTE--QHDKKIAVILNEFG 57 (184)
Q Consensus 19 ~~~vi~i~G~-~GsGKTTll~~L~~~--~~~~~~~vi~~~~~ 57 (184)
+..++.|+|. .|.||||+.-.|+.. ..+.++.++-.|..
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r 144 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLR 144 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 4679999997 689999999888764 25667777766653
No 499
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=95.07 E-value=0.011 Score=51.21 Aligned_cols=25 Identities=40% Similarity=0.545 Sum_probs=22.7
Q ss_pred cCccEEEEEecCCChHHHHHHHHHh
Q psy7718 18 QPVPVTIITGYLGAGKTTLLNYILT 42 (184)
Q Consensus 18 ~~~~vi~i~G~~GsGKTTll~~L~~ 42 (184)
++.|+++++|..|+|||||++.|.+
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~ 26 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRK 26 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4678999999999999999999985
No 500
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.06 E-value=0.021 Score=45.75 Aligned_cols=24 Identities=42% Similarity=0.459 Sum_probs=21.3
Q ss_pred cEEEEEecCCChHHHHHHHHHhcC
Q psy7718 21 PVTIITGYLGAGKTTLLNYILTEQ 44 (184)
Q Consensus 21 ~vi~i~G~~GsGKTTll~~L~~~~ 44 (184)
..+.|.|+.|+||||+.+.+....
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 468999999999999999998764
Done!