RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7718
(184 letters)
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP
binding, structure function project, S2F, unknown
function; 2.00A {Escherichia coli} SCOP: c.37.1.10
d.237.1.1
Length = 318
Score = 206 bits (526), Expect = 6e-67
Identities = 62/142 (43%), Positives = 87/142 (61%), Gaps = 15/142 (10%)
Query: 17 LQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDN---GN 73
+ P+ VT++TG+LGAGKTTLL +IL EQH KIAVI NEFGE VSV D+ G+
Sbjct: 1 MNPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGE-------VSV-DDQLIGD 52
Query: 74 LYEEWLELKNGCLCCSVKDNGVKAIENLMLKR----GKFDYILLETTGLADPGPIAKVFW 129
+ L NGC+CCS + A+ +L+ +FD +++E TG+ADPGPI + F+
Sbjct: 53 RATQIKTLTNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFF 112
Query: 130 LDKELGSDIYLDGIVTVVDCKH 151
+ L LDG++ +VD H
Sbjct: 113 SHEVLCQRYLLDGVIALVDAVH 134
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB:
1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 47.8 bits (113), Expect = 4e-07
Identities = 28/178 (15%), Positives = 61/178 (34%), Gaps = 23/178 (12%)
Query: 19 PVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILN--------EFGEGSAMEKSVSVGD 70
+ + G G+GKTTL D +N + + + V+V +
Sbjct: 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEE 72
Query: 71 NGNLYEEWLELKNGCLCC--SVKDNGVKAIENLMLKRGKFDYILLETTGLADPGPIAKVF 128
+ E + + + + + ++ + DY+L++T PG +
Sbjct: 73 ---IMREGYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDT-----PGQMETFL 124
Query: 129 WLD--KELGSDIYLDGIVTVVDCKHTIDVSFPDYFSIYLSILLSRLKELKVEQVHFFN 184
+ + L ++ +V + D + + DY + LL L+ L + N
Sbjct: 125 FHEFGVRLMENLPYPLVVYISDPEILKKPN--DYCFVRFFALLIDLR-LGATTIPALN 179
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.0 bits (108), Expect = 2e-06
Identities = 31/165 (18%), Positives = 63/165 (38%), Gaps = 38/165 (23%)
Query: 16 ELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLY 75
EL+P +I G LG+GKT + + + M + ++
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWV------------ALDVCLSYKVQCKM--------DFKIF 185
Query: 76 EEWLELKNGCLCCSVKDNGVKAIENLMLKRGKFDYILLETTGLADPGPIAKV-FWLDKEL 134
WL LKN C+ + ++ ++ L+ + ++ I + L + L
Sbjct: 186 --WLNLKN----CNSPETVLEMLQKLLYQIDP-NWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 135 GSDIYLDGIVTVVDCKHTIDVSFP---DYFSIYLSILL-SRLKEL 175
S Y + ++ V+ +V + F++ ILL +R K++
Sbjct: 239 KSKPYENCLL-VLL-----NVQNAKAWNAFNLSCKILLTTRFKQV 277
Score = 29.1 bits (64), Expect = 1.2
Identities = 31/196 (15%), Positives = 55/196 (28%), Gaps = 43/196 (21%)
Query: 6 DSEVPD-LVPAELQPVPVTIITGYLGAGKTT--LLNYILTEQHD-----KKIA-VILNEF 56
+V D L A + + + L + LL Y+ D L+
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333
Query: 57 GEGSAMEKSVSVGDNGNLYEEWLELKNGCLCCSVKDNGVKAIENL--MLKRGKFDY--IL 112
E S+ D ++ W + L ++ ++ L R FD +
Sbjct: 334 AE--------SIRDGLATWDNWKHVNCDKLTTIIE----SSLNVLEPAEYRKMFDRLSVF 381
Query: 113 LETTGLADPGPIAKVFWLDKELGSDIYLDGIVTVVDC-------KHTIDVSFPDYFSIYL 165
+ + P + + W D D +V V K SI
Sbjct: 382 PPSAHI--PTILLSLIWFDVI-----KSDVMVVVNKLHKYSLVEKQ----PKESTISIPS 430
Query: 166 SILLSRLKELKVEQVH 181
L ++K +H
Sbjct: 431 IYLELKVKLENEYALH 446
Score = 26.7 bits (58), Expect = 5.0
Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 9/34 (26%)
Query: 130 LDKELG------SDI---YLDGIVTVVDCKHTID 154
+D E G DI + D V DCK D
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQD 40
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 35.8 bits (82), Expect = 0.005
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 21 PVTIITGYLGAGKTTLLNYI---LTEQHDKKIAV 51
I G G G TTL +I L + I +
Sbjct: 46 HHVTINGPAGTGATTLTKFIIEALISTGETGIIL 79
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein,
ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus
radiodurans} PDB: 3gp8_A 3gpl_A*
Length = 574
Score = 34.7 bits (80), Expect = 0.013
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 21 PVTIITGYLGAGKTTLLNYILTEQHDKKIAVIL 53
+ ++TG G GK+T + + V L
Sbjct: 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGL 237
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 33.3 bits (75), Expect = 0.025
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 15 AELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVI 52
A +P+ + G GKTTLL ++ + I
Sbjct: 1 AGKTMIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPG 38
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 32.7 bits (74), Expect = 0.030
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 20 VPVTIITGYLGAGKTTLLNYILTE--QHDKKIAVI 52
+ I G +GKTTL+ ++ + ++AV+
Sbjct: 2 SLILSIVGTSDSGKTTLITRMMPILRERGLRVAVV 36
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane,
nucleotide-binding, RNA replication, transmembrane,
viral protein; 1.80A {Japanese encephalitis virus} PDB:
2v8o_A 2qeq_A
Length = 459
Score = 32.9 bits (75), Expect = 0.047
Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 5 SDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQH---DKKIAV 51
++ P L+ +T++ + G+GKT + + + + AV
Sbjct: 6 GGQQMGRGSPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAV 55
>2jlq_A Serine protease subunit NS3; ribonucleoprotein,
nucleotide-binding, viral nucleoprotein, endoplasmic
reticulum, helicase, hydrolase; 1.67A {Dengue virus 4}
PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A*
2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Length = 451
Score = 32.1 bits (73), Expect = 0.085
Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 6 DSEVPDLVPAELQPVPVTIITGYLGAGKTT-LLNYILTEQHDKKIAVIL 53
++ + +TI+ + GAGKT +L I+ E +++ ++
Sbjct: 5 GEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLI 53
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 31.2 bits (70), Expect = 0.13
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 20 VPVTIITGYLGAGKTTLLNYILTE--QHDKKIAVI 52
+ V + GY +GKTTL+ + + ++ +
Sbjct: 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTV 38
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 30.9 bits (69), Expect = 0.14
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 22 VTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGE 58
+ I+TG G GK+T+L + ++ I + +G+
Sbjct: 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGD 39
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 30.8 bits (69), Expect = 0.17
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 21 PVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGE 58
V ++TG G G TT + + + + FG
Sbjct: 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGS 41
>4ad1_A Glycosyl hydrolase family 71; glycoside hydrolase GH99, CAZY,
enzyme-carbohydra interaction, mannose glycosidase
inhibition; 1.90A {Bacteroides xylanisolvens} PDB:
4ad2_A* 4ad3_A* 4ad4_A* 4ad5_A*
Length = 380
Score = 31.3 bits (70), Expect = 0.17
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 54 NEFGEGSAMEKSVSVGDNGNLYEEW 78
NE+ EGS +E +V + Y ++
Sbjct: 332 NEWHEGSQIEPAVPYTSSEFTYLDY 356
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP:
c.37.1.10 PDB: 2qm7_A*
Length = 337
Score = 30.9 bits (70), Expect = 0.23
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 25 ITGYLGAGKTTLLNYILTE--QHDKKIAVI 52
ITG G GK+T ++ + + K+AV+
Sbjct: 60 ITGVPGVGKSTTIDALGSLLTAAGHKVAVL 89
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2,
protein structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 30.5 bits (69), Expect = 0.24
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 25 ITGYLGAGKTTLLNYILTE--QHDKKIAVI 52
+TG GAGK+T L + K+AVI
Sbjct: 61 VTGTPGAGKSTFLEAFGMLLIREGLKVAVI 90
>4acy_A Endo-alpha-mannosidase; hydrolase, endomannosidase, glycoside
hydrolase, CAZY, enzyme-carbohydrate interaction,
mannose; HET: MSE; 1.69A {Bacteroides thetaiotaomicron}
PDB: 4acz_A 4ad0_A* 4acz_B
Length = 382
Score = 30.5 bits (68), Expect = 0.27
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 54 NEFGEGSAMEKSVSVGDNGNLYEEW 78
NE+ EG+ +E +VS + Y ++
Sbjct: 328 NEWHEGTQIEPAVSKKCDAFEYLDY 352
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 30.2 bits (68), Expect = 0.30
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 25 ITGYLGAGKTTLLNYILTE--QHDKKIAVI 52
++G GAGK+T + Y + K++V+
Sbjct: 79 LSGPPGAGKSTFIEYFGKMLTERGHKLSVL 108
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 30.2 bits (68), Expect = 0.31
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 25 ITGYLGAGKTTLLNYILTE--QHDKKIAVI 52
ITG G GK+T + + + ++AV+
Sbjct: 84 ITGVPGVGKSTAIEALGMHLIERGHRVAVL 113
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase,
HEL helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 30.2 bits (67), Expect = 0.34
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 13 VPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEF 56
+ QP+ ++ G GAGKTT+ E + + + F
Sbjct: 26 KKSSKQPI-AILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase,
hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli}
SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Length = 608
Score = 30.1 bits (68), Expect = 0.43
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 21 PVTIITGYLGAGKTT----LLNYILTEQHDKKIAVIL 53
+++I+G G GKTT LL ++ ++ + L
Sbjct: 165 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRL 201
>3pnl_B PTS-dependent dihydroxyacetone kinase, ADP-bindin DHAL; structural
genomics, montreal-kingston bacterial structural
initiative, BSGI; HET: ADP; 2.20A {Escherichia coli}
PDB: 2btd_A*
Length = 211
Score = 29.5 bits (66), Expect = 0.50
Identities = 14/114 (12%), Positives = 41/114 (35%), Gaps = 10/114 (8%)
Query: 18 QPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEE 77
Q + + + G +++ E DK + + E ++ +S + +
Sbjct: 100 QSLTLEELYQMFRDGADGVISRGKAEPGDKTMCDVWVPVVE--SLRQSSEQNLS--VPVA 155
Query: 78 WLELKNGCLCCSVKDNGVKAIENLMLKRGKFDYILLETTGLADPGPIAKVFWLD 131
+ ++ ++ + ++G+ Y+ + G DPG + +F +
Sbjct: 156 LEAASSIA------ESAAQSTITMQARKGRASYLGERSIGHQDPGATSVMFMMQ 203
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion,
hydrolas binding complex; 2.40A {Helicobacter pylori}
SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Length = 330
Score = 29.3 bits (66), Expect = 0.59
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 24 IITGYLGAGKTTLLNYILTE 43
I+ G G+GKTT + I+
Sbjct: 175 IVCGGTGSGKTTYIKSIMEF 194
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 29.4 bits (66), Expect = 0.66
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 21 PVTIITGYLGAGKTTLL 37
+T++ G GAGK++L
Sbjct: 24 GITVVEGPNGAGKSSLF 40
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11,
replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus}
PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 29.2 bits (65), Expect = 0.69
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 22 VTIITGYLGAGKTTLLNYIL 41
+ +I G G+GK++LL+ IL
Sbjct: 25 INLIIGQNGSGKSSLLDAIL 44
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome
condensation, condensin, SMC, N subunit, ABC-type
ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus
ducreyi} PDB: 3euk_A*
Length = 483
Score = 29.5 bits (65), Expect = 0.72
Identities = 14/54 (25%), Positives = 21/54 (38%)
Query: 21 PVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNL 74
VT ++G GAGK+T + +T + E + S G G L
Sbjct: 30 LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTSSSRDKGLYGKL 83
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 29.2 bits (66), Expect = 0.72
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 22 VTIITGYLGAGKTTLLNYILTEQHDKKIAVI 52
++I G G GK++LLN +L Q++ +
Sbjct: 217 ISIFAGQSGVGKSSLLNALLGLQNEILTNDV 247
>1tvn_A Cellulase, endoglucanase G; glycoside hydrolase, CLAN GH-A, family
5-2; 1.41A {Pseudoalteromonas haloplanktis} SCOP:
c.1.8.3 PDB: 1tvp_A*
Length = 293
Score = 29.1 bits (65), Expect = 0.75
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 2/68 (2%)
Query: 28 YLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLELKN-GCL 86
Y G + N T D IA+ E+G +A + + + + + N
Sbjct: 196 YAGTHGQSYRNKAQT-ALDNGIALFATEWGTVNADGNGGVNINETDAWMAFFKTNNISHA 254
Query: 87 CCSVKDNG 94
++ D
Sbjct: 255 NWALNDKN 262
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Length = 287
Score = 29.2 bits (64), Expect = 0.79
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 13 VPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEF 56
A P ++ G G+GKT+L + I E I + + F
Sbjct: 27 KKAVESPT-AFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom
consortium, transferase; HET: EPE; 2.18A {Plasmodium
falciparum}
Length = 218
Score = 28.7 bits (65), Expect = 0.82
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDKKIAV 51
+I G G GK TL+ +L +
Sbjct: 27 VICGPSGVGKGTLIKKLL-NEFPNYFYF 53
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism,
structural genomics, structural genomics of pathogenic
protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium
vivax}
Length = 204
Score = 28.7 bits (65), Expect = 0.85
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDKKIAV 51
++ G G GK TL+ +L + +
Sbjct: 16 VVCGPSGVGKGTLIKKVL-SEFPSRFRF 42
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug
gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A
{Herpes simplex virus} SCOP: c.37.1.1
Length = 376
Score = 29.1 bits (64), Expect = 0.86
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 7 SEVPDLVPAELQPVPVTI-ITGYLGAGKTTLLNYILTEQHDKKIAVI 52
E ++ P + P + + I G G GKTT ++ I +
Sbjct: 35 QEATEVRPEQKMPTLLRVYIDGPHGMGKTTTTQLLVALGSRDDIVYV 81
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann,
hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 28.5 bits (63), Expect = 0.87
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDKKIAV 51
+TG G GKTTL++ + V
Sbjct: 5 FLTGPPGVGKTTLIHKASEVLKSSGVPV 32
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A
{Brucella suis}
Length = 361
Score = 28.8 bits (65), Expect = 0.99
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 24 IITGYLGAGKTTLLN 38
++ G G+GKTTL+
Sbjct: 179 VVAGETGSGKTTLMK 193
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2
function project, S2F, unknown function; HET: ADP;
1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB:
1fl9_A
Length = 158
Score = 28.0 bits (63), Expect = 1.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 12 LVPAELQPVPVTIITGYLGAGKTTLLNYIL 41
L+ + + + G LGAGKTTL +L
Sbjct: 25 LLKLHTEKAIMVYLNGDLGAGKTTLTRGML 54
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 28.6 bits (63), Expect = 1.1
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 7 SEVPDLVPAELQPVPVTIITGYLGAGKTTLL 37
+ + V ++ G G GKT +
Sbjct: 148 RRLLKDGEPHVSSAKVVLVDGVPGCGKTKEI 178
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 28.4 bits (64), Expect = 1.2
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 19 PVPVTIITGYLGAGKTTLLNYI 40
+P I GY +GKT+L N +
Sbjct: 178 NIPSIGIVGYTNSGKTSLFNSL 199
>7a3h_A Endoglucanase; hydrolase, cellulose degradation, glycoside H family
5, michaelis complex, SKEW-BOAT, distortion; 0.95A
{Bacillus agaradhaerens} SCOP: c.1.8.3 PDB: 1h2j_A*
1hf6_A* 1ocq_A* 1w3k_A* 1h11_A* 4a3h_A* 5a3h_A* 6a3h_A*
1w3l_A 8a3h_A* 2v38_A* 1qhz_A 1qi0_A* 1e5j_A* 1qi2_A*
1h5v_A* 1a3h_A 2a3h_A* 3a3h_A* 1lf1_A
Length = 303
Score = 28.3 bits (63), Expect = 1.2
Identities = 11/68 (16%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 28 YLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLELKN-GCL 86
Y G L + + D+ A+ ++E+G +A D ++ ++++ +N
Sbjct: 202 YAGTHGQNLRDQV-DYALDQGAAIFVSEWGTSAATGDGGVFLDEAQVWIDFMDERNLSWA 260
Query: 87 CCSVKDNG 94
S+
Sbjct: 261 NWSLTHKD 268
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding
protein; 2.30A {Archaeoglobus fulgidus}
Length = 221
Score = 28.4 bits (64), Expect = 1.2
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 30 GAGKTTLLNYILTEQHDK-KIAVILN 54
G+GKT L+ + ++ KI +L
Sbjct: 40 GSGKTLLIERTIERIGNEVKIGAMLG 65
>1egz_A Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CLAN GH-A, family
5-2, cellulase; 2.30A {Erwinia chrysanthemi} SCOP:
c.1.8.3
Length = 291
Score = 28.3 bits (63), Expect = 1.3
Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 2/68 (2%)
Query: 28 YLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLELKN-GCL 86
Y G +L N + IA+ + E+G +A + + ++ N
Sbjct: 194 YAGTHGESLRNKARQ-ALNNGIALFVTEWGTVNADGNGGVNQTETDAWVTFMRDNNISNA 252
Query: 87 CCSVKDNG 94
++ D
Sbjct: 253 NWALNDKN 260
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 28.2 bits (64), Expect = 1.3
Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDKKIAV 51
+++G G GK T+ I E
Sbjct: 10 VLSGPSGVGKGTVRKRIF-EDPSTSYKY 36
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 28.3 bits (64), Expect = 1.4
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 30 GAGKTTLLNYILTEQH 45
GAGKTTLLN + +
Sbjct: 57 GAGKTTLLNILNAYEP 72
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and
beta protein; HET: GSP; 1.90A {Methanocaldococcus
jannaschii} PDB: 2hf8_A*
Length = 226
Score = 28.0 bits (63), Expect = 1.4
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 30 GAGKTTLLNYILTEQHDK-KIAVILN 54
G+GKT L+ ++ DK KIA I
Sbjct: 48 GSGKTLLIEKLIDNLKDKYKIACIAG 73
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase,
hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB:
2oaq_1
Length = 511
Score = 28.6 bits (64), Expect = 1.4
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 24 IITGYLGAGKTTLLNYILTE-QHDKKIAVI 52
I+ G +GKTT LN I+ D K+ I
Sbjct: 264 IVVGETASGKTTTLNAIMMFIPPDAKVVSI 293
>1jd0_A Carbonic anhydrase XII; extracellular domain, bitopic protein, type
I membrane protein, lyase; HET: AZM; 1.50A {Homo
sapiens} SCOP: b.74.1.1 PDB: 1jcz_A*
Length = 263
Score = 28.2 bits (63), Expect = 1.5
Identities = 8/48 (16%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 135 GSDIYLDGIVTVVDCKHTIDVSFPDYFSIYLSILLSRLKELKVEQVHF 182
G ++ + + + H++ ++ P +++ L SR Q+H
Sbjct: 50 GYNLSANKQFLLTNNGHSVKLNLPS--DMHIQGLQSR---YSATQLHL 92
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA
compl protease/ntpase/helicase, hydrolase; 1.95A
{Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A*
1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A*
3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A
Length = 666
Score = 28.4 bits (63), Expect = 1.5
Identities = 10/49 (20%), Positives = 15/49 (30%)
Query: 1 MDSDSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKI 49
PA Q V + G+GK+T + Q K +
Sbjct: 213 TMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVL 261
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA
replication, viral replication, nucleotide-binding;
2.10A {Kokobera virus} PDB: 2v6j_A
Length = 431
Score = 28.3 bits (63), Expect = 1.6
Identities = 7/34 (20%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 22 VTIITGYLGAGKTTLLNYILTEQH---DKKIAVI 52
+T++ + GAGKT + L + + ++
Sbjct: 4 LTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVIL 37
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 27.7 bits (61), Expect = 1.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 24 IITGYLGAGKTTLLNYILTE 43
IITG G GKTTL+ I+
Sbjct: 4 IITGEPGVGKTTLVKKIVER 23
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 27.8 bits (63), Expect = 1.7
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDK 47
+++G G GK T+ + +
Sbjct: 12 VLSGPSGVGKGTVREAVFKDPETS 35
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus
stearothermophilus} PDB: 2lkd_A*
Length = 178
Score = 27.6 bits (62), Expect = 1.7
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 15 AELQP-VPVTIITGYLGAGKTTLLNYI 40
+ + PV I G++ GKTTLL+ I
Sbjct: 2 SHMVERPPVVTIMGHVDHGKTTLLDAI 28
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 27.9 bits (63), Expect = 1.9
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 22 VTIITGYLGAGKTTLLNYIL 41
++ + G G GK++LLN I
Sbjct: 171 ISTMAGLSGVGKSSLLNAIN 190
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 27.9 bits (63), Expect = 1.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 22 VTIITGYLGAGKTTLLNYIL 41
T+ G G GK++LLN I
Sbjct: 175 TTVFAGQSGVGKSSLLNAIS 194
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 27.9 bits (63), Expect = 2.0
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 22 VTIITGYLGAGKTTLLNYIL 41
+ I+ G G GK+++L+ +
Sbjct: 167 ICILAGPSGVGKSSILSRLT 186
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization,
acetylation, ATP-binding, nucleotide-binding,
phosphoprotein, transferase; 1.80A {Saccharomyces
cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A
2zzy_A
Length = 186
Score = 27.4 bits (62), Expect = 2.1
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDKKIAV 51
+I+G G GK+TLL + ++
Sbjct: 5 VISGPSGTGKSTLLKKLF-AEYPDSFGF 31
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein
structure initiati YORK structural genomics research
consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 27.3 bits (60), Expect = 2.2
Identities = 8/37 (21%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 1 MDSDSDSEVPDLVPAELQPVPVTII-TGYLGAGKTTL 36
M + + A ++ P +I+ G G+GK+++
Sbjct: 1 MVMSIEYKSE---AAAVRRFPGSIVVMGVSGSGKSSV 34
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure
initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus
solfataricus} SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 27.7 bits (61), Expect = 2.3
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 21 PVTIITGYLGAGKTTLLNYILTEQHDKKI 49
P+T++ G GK++++ + E + I
Sbjct: 31 PITLVLGLRRTGKSSIIKIGINELNLPYI 59
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR;
2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB:
1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 27.5 bits (62), Expect = 2.4
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 5 SDSEVPDLVPAELQPVP----VTIITGYLGAGKTTLLNYILTEQHD 46
S E PD P V +++G GK+T++ + +
Sbjct: 1 SVGEGPDTKPTARGQPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN 46
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 27.6 bits (61), Expect = 2.5
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 23 TIITGYLGAGKTTLLNYILTEQHDKKIAVIL 53
I GAGK+ +L ++ + VI+
Sbjct: 38 WTILAKPGAGKSFTAKMLLLREYMQGSRVII 68
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP
binding motif, ATP- binding, nucleotide-binding,
transferase; HET: ADP; 1.79A {Methanocaldococcus
jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A*
3adb_A*
Length = 260
Score = 27.5 bits (61), Expect = 2.5
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 21 PVTIITGYLGAGKTTLLNYILTEQHDKKIAVIL 53
+ I+TG G GK+T + I VI+
Sbjct: 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIV 37
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET:
BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Length = 341
Score = 27.5 bits (60), Expect = 2.6
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 14 PAELQPVPVTI-ITGYLGAGKTTLLNYI 40
+++ + I + G G GKTT
Sbjct: 5 KTDVKMGVLRIYLDGAYGIGKTTAAEEF 32
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase;
2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A*
2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Length = 219
Score = 27.1 bits (61), Expect = 2.6
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDKKIAV 51
I++ GAGK++L+ +L Q V
Sbjct: 20 IVSAPSGAGKSSLIQALLKTQPLYDTQV 47
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 27.0 bits (60), Expect = 2.9
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGS 60
+ G +GKTT L +I ++ + + +++ E
Sbjct: 18 VYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDE 54
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug
gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes
simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A*
1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B*
1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A*
1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Length = 331
Score = 27.4 bits (60), Expect = 2.9
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 25 ITGYLGAGKTTLLNYILTEQHDKKIAVI 52
I G G GKTT ++ I +
Sbjct: 9 IDGPHGMGKTTTTQLLVALGSRDDIVYV 36
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A
{Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A*
1p73_A* 1p75_A*
Length = 334
Score = 27.4 bits (60), Expect = 3.1
Identities = 6/41 (14%), Positives = 14/41 (34%)
Query: 15 AELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNE 55
+ + + + G G GK+T + + + E
Sbjct: 2 SHMVTIVRIYLDGVYGIGKSTTGRVMASAASGGSPTLYFPE 42
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE;
1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Length = 175
Score = 26.8 bits (60), Expect = 3.1
Identities = 10/49 (20%), Positives = 25/49 (51%), Gaps = 14/49 (28%)
Query: 24 IITGYLGAGKTTL-------LNY-------ILTEQHDKKIAVILNEFGE 58
+ G++G+GK+TL L+ ++ ++ ++K++ I + E
Sbjct: 8 VFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFNQKVSEIFEQKRE 56
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 27.5 bits (60), Expect = 3.2
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 10 PDLVPAELQPVPVTIITGYLGAGKTTLLNYIL 41
P L A+ P+ ++ G GKT+ + Y+L
Sbjct: 55 PALEDADFDGKPMVLVAGQYSTGKTSFIQYLL 86
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome
partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Length = 227
Score = 27.1 bits (59), Expect = 3.4
Identities = 15/53 (28%), Positives = 22/53 (41%)
Query: 22 VTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNL 74
VT ++G GAGK+T + +T + E A S G +G L
Sbjct: 29 VTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKL 81
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 27.0 bits (61), Expect = 3.4
Identities = 12/19 (63%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Query: 22 VTIITGYLGAGKTTLLNYI 40
VT+I G GAGKTT L+ I
Sbjct: 35 VTLI-GANGAGKTTTLSAI 52
>3zx4_A MPGP, mannosyl-3-phosphoglycerate phosphatase; hydrolase,
haloalkanoid acid dehalogenase-like phosphatase,
crystallographic snapshot; HET: 2M8; 1.74A {Thermus
thermophilus} PDB: 3zty_A 3zu6_A* 3ztw_A* 3zw7_A*
3zwd_A* 3zwk_A 3zup_A* 3zx5_A*
Length = 259
Score = 26.9 bits (59), Expect = 3.7
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 39 YILTEQHDKKIAV--ILNEFGEGSAMEKSVSVGDNGN 73
Y + DK AV + + + +V +GD+ N
Sbjct: 169 YHAAKGADKGRAVARLRALWPDPEEARFAVGLGDSLN 205
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis,
phosphoprotein, feedback inhibition,
deoxyribonucleoside kinase, salvage pathway; HET: DCP;
2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB:
1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A*
2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Length = 230
Score = 27.0 bits (59), Expect = 3.7
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 3 SDSDSEVPDLVPAELQPVPVTI-ITGYLGAGKTTLLNYILTEQHDKKIAVI 52
+++ S P T+ I G +G+GKTT LN+ E++ I ++
Sbjct: 2 AEAASCARKGTKYAEGTQPFTVLIEGNIGSGKTTYLNHF--EKYKNDICLL 50
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural
genomics of infec diseases, csgid, metal binding,
transferase; 1.70A {Bacteroides thetaiotaomicron}
Length = 199
Score = 26.8 bits (60), Expect = 3.8
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 14/49 (28%)
Query: 24 IITGYLGAGKTTL-------LNY-------ILTEQHDKKIAVILNEFGE 58
+TGY+GAGKTTL LN + E+ K + + E GE
Sbjct: 29 FLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFHKTVGELFTERGE 77
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 26.8 bits (60), Expect = 3.8
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDKKIAV 51
+++ G GKTT+ N +L E+ I
Sbjct: 31 VLSSPSGCGKTTVANKLL-EKQKNNIVK 57
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB:
1f2u_A* 1us8_A*
Length = 149
Score = 26.6 bits (59), Expect = 3.8
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 22 VTIITGYLGAGKTTLL 37
+ +I G G+GK++LL
Sbjct: 25 INLIIGQNGSGKSSLL 40
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET:
GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Length = 447
Score = 27.3 bits (59), Expect = 3.9
Identities = 6/30 (20%), Positives = 16/30 (53%)
Query: 18 QPVPVTIITGYLGAGKTTLLNYILTEQHDK 47
+ V + G GK+ L++++L +++
Sbjct: 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQ 94
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 26.7 bits (60), Expect = 4.1
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 30 GAGKTTLLNYI 40
G+GK+TL+N I
Sbjct: 43 GSGKSTLINVI 53
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 27.3 bits (59), Expect = 4.2
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 25 ITGYLGAGKTTLLNYIL 41
+ G + GK+T LN ++
Sbjct: 74 VLGDMKRGKSTFLNALI 90
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural
genomics, APC84050.2, PS protein structure initiative;
HET: MSE; 1.82A {Neisseria meningitidis MC58}
Length = 199
Score = 26.6 bits (58), Expect = 4.2
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 21 PVTIITGYLGAGKT 34
+ +ITG G+GKT
Sbjct: 6 EICLITGTPGSGKT 19
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic
subunit]; helicase, flavivirus, DEAD-BOX, ATPase,
rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP:
c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Length = 440
Score = 26.7 bits (59), Expect = 4.4
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 22 VTIITGYLGAGKTT-LLNYILTEQHDKKIAVIL 53
T++ + GAGKT L IL E +++ ++
Sbjct: 10 TTVLDFHPGAGKTRRFLPQILAECARRRLRTLV 42
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 26.5 bits (59), Expect = 4.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 25 ITGYLGAGKTTLLNYILTE 43
+ G GAGKT+LL I+ E
Sbjct: 69 VAGSTGAGKTSLLMMIMGE 87
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
burnetii}
Length = 205
Score = 26.3 bits (59), Expect = 4.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDKKIAV 51
II+ GAGKT+L+ ++ + KI++
Sbjct: 11 IISAPSGAGKTSLVRALVKALAEIKISI 38
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the
strand order 23145, walker A motif, cholesterol
biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Length = 202
Score = 26.5 bits (58), Expect = 4.9
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 12 LVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVIL 53
+ P P V + +G +GK + L + + +L
Sbjct: 3 MAPLGGAPRLVLLFSGKRKSGKDFVTEA-LQSRLGADVCAVL 43
>2ged_A SR-beta, signal recognition particle receptor beta subunit;
protein transport, G protein, proline isomerization,
circular permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 26.2 bits (58), Expect = 4.9
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 24 IITGYLGAGKTTLLNYILTEQH 45
II G +GKT+LL + T+
Sbjct: 52 IIAGPQNSGKTSLLTLLTTDSV 73
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A
{Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A*
3mrs_A 3n2e_A*
Length = 168
Score = 26.4 bits (59), Expect = 5.0
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 14/49 (28%)
Query: 24 IITGYLGAGKTTL-------LNY-------ILTEQHDKKIAVILNEFGE 58
++ G++G+GK++L L I++E+ + I E GE
Sbjct: 11 VLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVGLSVREIFEELGE 59
>3jxg_A Receptor-type tyrosine-protein phosphatase gamma; Ca-like domain,
glycoprotein, hydrolase, membrane, phosphoprotein,
transmembrane, cell adhesion; 1.70A {Mus musculus} PDB:
3kld_B* 3jxh_C
Length = 269
Score = 26.7 bits (59), Expect = 5.1
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 135 GSDIYLDGIVTVVDCKHTIDVSFPDYFSIYLSILLSRLKELKVEQVHF 182
G D + + T+ + D + + + L R K E+V F
Sbjct: 55 GFDNESSNKTWMKNTGKTVAILLKDDYFVSGAGLPGR---FKAEKVEF 99
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 26.1 bits (58), Expect = 5.2
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 7 SEVPDLVPAELQPVPVTI-ITGYLGAGKTTLLNYILTEQHDKKIAVIL 53
+ + A + + I G +GKTTL N + ++ I+V +
Sbjct: 8 DFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCV 55
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 26.6 bits (58), Expect = 5.3
Identities = 8/37 (21%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 16 ELQPVPVTI-ITGYLGAGKTTLLNYILTEQHDKKIAV 51
E+ + + +TG G+GK++ +N + ++++ A
Sbjct: 64 EIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAA 100
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A
{Rhodobacter sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 26.5 bits (58), Expect = 5.3
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 25 ITGYLGAGKTTLLNYILTEQHDKKIAVIL 53
+TG GAG +T+ + + + +
Sbjct: 10 VTGSSGAGTSTVKHTFDQIFRREGVKAVS 38
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATPase, exonuclease, endonucle binding,
DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB:
3qkr_A*
Length = 203
Score = 26.1 bits (58), Expect = 5.3
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 22 VTIITGYLGAGKTTLL 37
+ +I G G+GK++LL
Sbjct: 25 INLIIGQNGSGKSSLL 40
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control
factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP:
a.4.5.11 c.37.1.20
Length = 389
Score = 26.7 bits (58), Expect = 5.4
Identities = 6/30 (20%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 24 IITGYLGAGKTTLLNYILTE-QHDKKIAVI 52
+ G G GKT L + + +
Sbjct: 48 TLLGRPGTGKTVTLRKLWELYKDKTTARFV 77
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat
ATP binding, chloroplast, transferase; 2.35A
{Arabidopsis thaliana}
Length = 250
Score = 26.3 bits (58), Expect = 5.5
Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 15/50 (30%)
Query: 24 IITGYLGAGKTTL-------LNY--------ILTEQHDKKIAVILNEFGE 58
+ G +G+GKTT+ L Y I +A I FGE
Sbjct: 52 YLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMKGTSVAEIFEHFGE 101
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 26.7 bits (59), Expect = 5.5
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 22 VTIITGYLGAGKTTLL 37
+ I G G+GK+++
Sbjct: 27 IVAIIGENGSGKSSIF 42
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 26.7 bits (60), Expect = 5.6
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 23 TIITGYLGAGKTTLLNYIL 41
+TG G+GK++L+ L
Sbjct: 613 VCVTGVSGSGKSSLVMETL 631
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 26.0 bits (58), Expect = 5.7
Identities = 6/24 (25%), Positives = 15/24 (62%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDK 47
++ G G G++ + N +L++ +K
Sbjct: 23 VLIGASGVGRSHIKNALLSQNPEK 46
>1g01_A Endoglucanase; alpha/beta barrel, TIM barrel, hydrolase; 1.90A
{Bacillus SP} SCOP: c.1.8.3 PDB: 1g0c_A*
Length = 364
Score = 26.5 bits (58), Expect = 5.7
Identities = 20/90 (22%), Positives = 30/90 (33%), Gaps = 9/90 (10%)
Query: 46 DKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLELKN-GCLCCSVKDNGVKAIENLMLK 104
D +AV E+G A D +++ +L N S+ + +
Sbjct: 256 DNGVAVFATEWGTSQANGDGGPYFDEADVWLNFLNKHNISWANWSLTNKNEIS------- 308
Query: 105 RGKFDYILLETTGLADPGPIAKVFWLDKEL 134
G F L T D P A W +EL
Sbjct: 309 -GAFTPFELGRTDATDLDPGANQVWAPEEL 337
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein
COOC; Zn-bound dimer, nickel binding protein, ATPase;
1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A*
3kje_A 3kji_A*
Length = 254
Score = 26.3 bits (58), Expect = 6.0
Identities = 17/100 (17%), Positives = 38/100 (38%), Gaps = 21/100 (21%)
Query: 84 GCLCCSVKDNGVKAIENLMLKRGKFDYILLETTGLADPGPIAKVFWLDKELGSDIYLDGI 143
G C +++ + ++ + L K + ++ +D G + G
Sbjct: 109 GSQCYCRENSFLGSVVS-ALFLDKKEAVV-----------------MDMGAGIEHLTRGT 150
Query: 144 VTVVDCKHTIDVSFPDYFSIYLSILLSRL-KELKVEQVHF 182
VD I V P+ SI + + +L +L +++V +
Sbjct: 151 AKAVD--MMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRY 188
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 26.7 bits (60), Expect = 6.1
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 23 TIITGYLGAGKTTLLNYIL 41
T +TG G+GK+TL+N IL
Sbjct: 671 TSVTGVSGSGKSTLVNDIL 689
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 26.7 bits (60), Expect = 6.1
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 23 TIITGYLGAGKTTLLNYIL 41
+TG G+GK+TL+N +L
Sbjct: 653 VAVTGVSGSGKSTLVNEVL 671
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 26.3 bits (59), Expect = 6.3
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 23 TIITGYLGAGKTTLLNYIL 41
+TG G+GK+TL+N +L
Sbjct: 351 VAVTGVSGSGKSTLVNEVL 369
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 26.4 bits (57), Expect = 6.4
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDKKIAVILNEF 56
IT + K L+N ++ E L F
Sbjct: 49 YITNADDSTKFQLVNDVMDELITSSARKELPIF 81
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA
binding protein, hydrolase, gtpas; HET: GCP; 3.94A
{Escherichia coli} PDB: 2j28_9
Length = 433
Score = 26.3 bits (59), Expect = 6.4
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 13 VPAELQPVPVTII--TGYLGAGKTTL---LNYILTEQHDKKIAVI 52
L P ++ G GAGKTT L L E+H KK+ V+
Sbjct: 91 QTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVV 135
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 26.4 bits (58), Expect = 6.9
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 22 VTIITGYLGAGKTTLLNYILTEQ 44
T+++G G GKT L
Sbjct: 41 STLVSGTSGTGKTLFSIQFLYNG 63
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 26.2 bits (57), Expect = 7.0
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 21 PVTIITGYLGAGKTTLLNYILTEQHDKKIAVI 52
P+T++ G GK++LL L E+ I
Sbjct: 32 PLTLLLGIRRVGKSSLLRAFLNERPGILIDCR 63
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 25.9 bits (57), Expect = 7.0
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 24 IITGYLGAGKTTLLNYILTEQH 45
+ G +GKT L +LT Q+
Sbjct: 11 LFVGLCDSGKTLLFVRLLTGQY 32
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 26.3 bits (59), Expect = 7.1
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 23 TIITGYLGAGKTTLLNYIL 41
T +TG G+GK+TL++ L
Sbjct: 526 TSVTGVSGSGKSTLVSQAL 544
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase
like domain, protein binding; 1.31A {Homo sapiens}
SCOP: c.37.1.1
Length = 180
Score = 25.9 bits (58), Expect = 7.2
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDK 47
++ G G G+ + N ++T+ D+
Sbjct: 9 VLLGAHGVGRRHIKNTLITKHPDR 32
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A
{Mus musculus} SCOP: c.37.1.1
Length = 198
Score = 25.9 bits (58), Expect = 7.4
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDK 47
+++G GAGK+TLL + E
Sbjct: 8 VLSGPSGAGKSTLLKKLFQEHSSI 31
>1sgw_A Putative ABC transporter; structural genomics, P protein
structure initiative, southeast collaboratory for S
genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP:
c.37.1.12
Length = 214
Score = 25.9 bits (58), Expect = 7.5
Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 3/21 (14%)
Query: 25 ITGYLG---AGKTTLLNYILT 42
+ + G GKTTLL I T
Sbjct: 37 VVNFHGPNGIGKTTLLKTIST 57
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 25.9 bits (57), Expect = 7.7
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 24 IITGYLGAGKTTLLNYILTEQH 45
II G +GKT+LL + T+
Sbjct: 16 IIAGPQNSGKTSLLTLLTTDSV 37
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 26.0 bits (58), Expect = 7.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 25 ITGYLGAGKTTLLNYILTE 43
+ G GAGKT+LL I+ E
Sbjct: 39 VAGSTGAGKTSLLMMIMGE 57
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 26.2 bits (57), Expect = 8.1
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 25 ITGYLGAGKTTLLNYILTEQHD 46
I G G GK+TL+ I Q D
Sbjct: 466 ICGPNGCGKSTLMRAIANGQVD 487
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid
binding protein; branched amino acid, PSI-II, NYSGXRC,
structural genomics; 2.40A {Thermus thermophilus}
Length = 392
Score = 25.9 bits (57), Expect = 8.5
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 34 TTLLNYILTEQHDKKIAVIL--NEFGEGSA 61
LL YI E+ K+A+++ + FG
Sbjct: 131 VALLEYIAREKKGAKVALVVHPSPFGRAPV 160
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 25.8 bits (56), Expect = 8.6
Identities = 29/171 (16%), Positives = 49/171 (28%), Gaps = 22/171 (12%)
Query: 24 IITGYLGAGKTTLLNYIL-----TEQHDKKIAVILNEFGEGSAMEKSVSVGD-----NGN 73
I+ G GAGK+ N IL + G + V V D +
Sbjct: 25 ILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQ 84
Query: 74 LYEEWLELKNGCLCCSVKDNGVKAIENLMLKRGKFDYILLETTGLADPGPIAKVFWLDKE 133
+ + + C + G A+ +L+ G V +
Sbjct: 85 VSKTDPGCEERGHCYLLSAPGPHAL------------LLVTQLGRFTAQDQQAVRQVRDM 132
Query: 134 LGSDIYLDGIVTVVDCKHTIDVSFPDYFSIYLSILLSRLKELKVEQVHFFN 184
G D+ ++ + S DY S + L L +V F+
Sbjct: 133 FGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGGRVCAFD 183
>3jxf_A Receptor-type tyrosine-protein phosphatase zeta; Ca-like domain,
alternative splicing, glycoprotein, hydrolase, membrane,
polymorphism; 2.00A {Homo sapiens} PDB: 3s97_A*
Length = 272
Score = 25.9 bits (57), Expect = 8.8
Identities = 5/48 (10%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 135 GSDIYLDGIVTVVDCKHTIDVSFPDYFSIYLSILLSRLKELKVEQVHF 182
G D + + T++++ + + + + K ++ F
Sbjct: 54 GWDKTSLENTFIHNTGKTVEINLTNDYRVSGGVSEMV---FKASKITF 98
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex,
transferase; HET: DTP; 2.80A {Homo sapiens} SCOP:
c.37.1.1
Length = 241
Score = 25.9 bits (56), Expect = 9.2
Identities = 6/21 (28%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 21 PVTI-ITGYLGAGKTTLLNYI 40
P + I G + GK+T + +
Sbjct: 2 PRRLSIEGNIAVGKSTFVKLL 22
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase;
HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A*
2jas_A*
Length = 205
Score = 25.7 bits (56), Expect = 9.5
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 25 ITGYLGAGKTTLLNYI 40
I G +GAGK+T+ I
Sbjct: 5 IFGTVGAGKSTISAEI 20
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 26.0 bits (57), Expect = 9.8
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 14 PAELQPVPVTIITGYLGAGKTTLLNYI 40
P +P +I G+ GK+TLL +
Sbjct: 161 PVVDLEIPTVVIAGHPNVGKSTLLKAL 187
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.139 0.411
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,911,965
Number of extensions: 173906
Number of successful extensions: 711
Number of sequences better than 10.0: 1
Number of HSP's gapped: 707
Number of HSP's successfully gapped: 163
Length of query: 184
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 96
Effective length of database: 4,244,745
Effective search space: 407495520
Effective search space used: 407495520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.8 bits)