RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7718
(184 letters)
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 222
Score = 116 bits (292), Expect = 1e-33
Identities = 59/140 (42%), Positives = 84/140 (60%), Gaps = 9/140 (6%)
Query: 19 PVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEW 78
P+ VT++TG+LGAGKTTLL +IL EQH KIAVI NEFGE S ++ + +
Sbjct: 2 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRAT-----QI 56
Query: 79 LELKNGCLCCSVKDNGVKAI----ENLMLKRGKFDYILLETTGLADPGPIAKVFWLDKEL 134
L NGC+CCS + A+ +NL +FD +++E TG+ADPGPI + F+ + L
Sbjct: 57 KTLTNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVL 116
Query: 135 GSDIYLDGIVTVVDCKHTID 154
LDG++ +VD H +
Sbjct: 117 CQRYLLDGVIALVDAVHADE 136
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 60.8 bits (146), Expect = 3e-12
Identities = 18/142 (12%), Positives = 43/142 (30%), Gaps = 10/142 (7%)
Query: 22 VTIITGYLGAGKTTLLNYILTEQHDKKIAVILN-----EFGEGSAMEKSVSVGDNGNLYE 76
+ + G G+GKTTL D +N + +
Sbjct: 2 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMR 61
Query: 77 EWLELKNGCLCC--SVKDNGVKAIENLMLKRGKFDYILLETTGLADPGPIAKVFWLDKEL 134
E + + + + + ++ + DY+L++T G + + L
Sbjct: 62 EGYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFG---VRL 118
Query: 135 GSDIYLDGIVTVVDCKHTIDVS 156
++ +V + D + +
Sbjct: 119 MENLPYPLVVYISDPEILKKPN 140
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 54.1 bits (129), Expect = 4e-10
Identities = 18/135 (13%), Positives = 41/135 (30%), Gaps = 6/135 (4%)
Query: 22 VTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLEL 81
V + GY +GKTTL+ + + V + D+
Sbjct: 3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGVDSVRHERAGAVA 62
Query: 82 K---NGCLCCSVKDNGVKAIEN--LMLKRGKFDYILLETTGLADPGPIAKVFWLDKELGS 136
L + +++ + + D +L+E + + +++ S
Sbjct: 63 TAVEGDGLLQLHLRRPLWRLDDVLALYAPLRLDLVLVEGYKQERHPKVV-LVRSEEDWAS 121
Query: 137 DIYLDGIVTVVDCKH 151
+L I V+ +
Sbjct: 122 LQHLANIRAVIAWEP 136
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 53.4 bits (127), Expect = 6e-10
Identities = 11/137 (8%), Positives = 36/137 (26%), Gaps = 8/137 (5%)
Query: 20 VPVTIITGYLGAGKTTLLNYILTEQHDK--KIAVILNEFGEGSAMEKSVSVGDNGNLYEE 77
+P+ + G GKTTLL ++ + + +I + + + +
Sbjct: 2 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAA 61
Query: 78 WLELKNGCLCCSVKDNGVKAIENLMLKRGKF------DYILLETTGLADPGPIAKVFWLD 131
+ + + + + +L + ++ +
Sbjct: 62 QTIVASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAG 121
Query: 132 KELGSDIYLDGIVTVVD 148
+ ++ V
Sbjct: 122 HRPEELVIDRHVIAVAS 138
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli
[TaxId: 562]}
Length = 222
Score = 31.9 bits (71), Expect = 0.028
Identities = 21/151 (13%), Positives = 42/151 (27%), Gaps = 11/151 (7%)
Query: 21 PVTIITGYLGAGKTTLLN---YILTEQHDKKIAVILNEFGEGSAMEKSVSVG-DNGNLYE 76
VT ++G GAGK+T + L E G S G +
Sbjct: 25 LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCY 84
Query: 77 EWLELKNGCLCCSVKDNGVKAIENLMLKRGKFDYILLETTGLADPGPIAKVFWLDKELGS 136
L+ N + + + + D + P++
Sbjct: 85 SMLDTIN-------SRHQRVVVGVRLQQVAGRDRKVDIKPFAIQGLPMSVQPTQLVTETL 137
Query: 137 DIYLDGIVTVVDCKHTIDVSFPDYFSIYLSI 167
+ ++ + + K ++ F + SI
Sbjct: 138 NERQARVLPLNELKDKLEAMEGVQFKQFNSI 168
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 31.8 bits (71), Expect = 0.030
Identities = 21/163 (12%), Positives = 46/163 (28%), Gaps = 10/163 (6%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLELKN 83
+I+G G GK+TLL + E D + + A E + + ++ E +KN
Sbjct: 5 VISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKN 64
Query: 84 GCLC--CSVKDNGVKAIENLMLKRGKFDYILLETTGLADPGPIAKVFWLDKELGSDIYLD 141
N + + + K + + + + L+
Sbjct: 65 NEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARF------- 117
Query: 142 GIVTVVDCKHTIDVSFPDYFSIYLSILLSRLKELKVEQVHFFN 184
+ + + + RL + E +
Sbjct: 118 -LFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAET 159
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 31.4 bits (70), Expect = 0.047
Identities = 12/79 (15%), Positives = 22/79 (27%), Gaps = 2/79 (2%)
Query: 25 ITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLELKNG 84
ITG G GK+T ++ + + V + S +GD + +
Sbjct: 56 ITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLA--IDRN 113
Query: 85 CLCCSVKDNGVKAIENLML 103
+G
Sbjct: 114 AFIRPSPSSGTLGGVAAKT 132
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 31.4 bits (70), Expect = 0.053
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 25 ITGYLGAGKTTLLNYILTE--QHDKKIAVILNE 55
+TG GAGK+T L + K+AVI +
Sbjct: 59 VTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVD 91
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 30.5 bits (67), Expect = 0.093
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 22 VTIITGYLGAGKTTLLNYIL 41
+ +I G G+GK++LL+ IL
Sbjct: 25 INLIIGQNGSGKSSLLDAIL 44
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 29.9 bits (66), Expect = 0.11
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDKKIAVI 52
+++G GAGK+TLL + E +
Sbjct: 4 VLSGPSGAGKSTLLKKLFQEHSSIFGFSV 32
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 30.0 bits (66), Expect = 0.12
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 21 PVTIITGYLGAGKTTLLNYILTEQ 44
P II G +GKT+LL + T+
Sbjct: 4 PSIIIAGPQNSGKTSLLTLLTTDS 27
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 29.8 bits (66), Expect = 0.16
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDKKIAV 51
I++ GAGK++L+ +L Q V
Sbjct: 6 IVSAPSGAGKSSLIQALLKTQPLYDTQV 33
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 29.3 bits (64), Expect = 0.17
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 22 VTIITGYLGAGKTTLLNYILTEQHDKKI 49
+ + G G+GK+T + +
Sbjct: 4 IILTIGCPGSGKSTWAREFIAKNPGFYN 31
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 29.2 bits (64), Expect = 0.19
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDKKIAVILNEFG 57
+ G +GKT L +LT Q+ I +
Sbjct: 4 LFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSA 37
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human
hepatitis C virus (HCV), different isolates [TaxId:
11103]}
Length = 136
Score = 29.1 bits (64), Expect = 0.20
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 14 PAELQPVPVTIITGYLGAGKTTLLNYILTEQH 45
PA Q V + G+GK+T + Q
Sbjct: 2 PAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQG 33
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 29.2 bits (64), Expect = 0.20
Identities = 7/38 (18%), Positives = 18/38 (47%)
Query: 22 VTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEG 59
+ I+ G AGK+ ++ + + + +A ++ E
Sbjct: 5 MIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEA 42
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 29.2 bits (64), Expect = 0.21
Identities = 10/97 (10%), Positives = 30/97 (30%), Gaps = 7/97 (7%)
Query: 22 VTIITGYLGAGKTTL-------LNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNL 74
+ ++ G G+GK+ + L+ + + + G + L
Sbjct: 8 IYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQAL 67
Query: 75 YEEWLELKNGCLCCSVKDNGVKAIENLMLKRGKFDYI 111
+ ++ + + +K +L+ G +
Sbjct: 68 NDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLS 104
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 29.2 bits (64), Expect = 0.21
Identities = 5/29 (17%), Positives = 14/29 (48%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDKKIAVI 52
+++G GK+T++ + + +V
Sbjct: 6 VLSGPSAVGKSTVVRCLRERIPNLHFSVS 34
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase),
helicase domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 29.6 bits (65), Expect = 0.22
Identities = 7/42 (16%), Positives = 14/42 (33%)
Query: 17 LQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGE 58
+ V ++T G GK+T + + + E
Sbjct: 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE 73
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 28.8 bits (63), Expect = 0.28
Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 1/95 (1%)
Query: 20 VPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWL 79
+P ++TG G GKTTL L + K + + E + D L E+ +
Sbjct: 4 LPNILLTGTPGVGKTTLGK-ELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRV 62
Query: 80 ELKNGCLCCSVKDNGVKAIENLMLKRGKFDYILLE 114
+ + +R +L
Sbjct: 63 VDELDNQMREGGVIVDYHGCDFFPERWFHIVFVLR 97
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 28.8 bits (63), Expect = 0.29
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 22 VTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFG 57
+ I+TG G GK+T+L + ++ I + +G
Sbjct: 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYG 38
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 28.5 bits (62), Expect = 0.29
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 24 IITGYLGAGKTTLLNYILTEQ 44
+ G AGKTTLL+ + ++
Sbjct: 4 LFLGLDNAGKTTLLHMLKNDR 24
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 29.0 bits (63), Expect = 0.30
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 10 PDLVPAELQPVPVTIITGYLGAGKTTLLNYI 40
P+ P +P + G GK++ +N +
Sbjct: 15 PEQYPEG--GLPEIALAGRSNVGKSSFINSL 43
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4
[TaxId: 10331]}
Length = 333
Score = 29.2 bits (65), Expect = 0.31
Identities = 9/55 (16%), Positives = 17/55 (30%), Gaps = 7/55 (12%)
Query: 19 PVPVTIIT--GYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDN 71
V + I G G GK+T + + + E M ++ +
Sbjct: 3 MVTIVRIYLDGVYGIGKSTTGRVMASAASGGSPTLYFPE-----PMAYWRTLFET 52
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 28.9 bits (63), Expect = 0.32
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 21 PVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGE 58
P+T++ G GK++++ + E + I + L +F E
Sbjct: 30 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEE 67
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 28.4 bits (62), Expect = 0.33
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 25 ITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEK 64
ITG G GKTTL+ I+ + I E + ++
Sbjct: 5 ITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKR 44
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 29.0 bits (64), Expect = 0.34
Identities = 8/37 (21%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 16 ELQPVPVTI-ITGYLGAGKTTLLNYILTEQHDKKIAV 51
E+ + + +TG G+GK++ +N + ++++ A
Sbjct: 51 EIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAA 87
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 28.6 bits (62), Expect = 0.34
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
Query: 22 VTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFG 57
V I+ G GK+TLLN +L K+A I
Sbjct: 8 VAIV-GKPNVGKSTLLNNLL----GVKVAPISPRPQ 38
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 28.7 bits (63), Expect = 0.35
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDKKIAVI 52
++ G G G+ + N ++T+ D+ I
Sbjct: 7 VLLGAHGVGRRHIKNTLITKHPDRFAYPI 35
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 28.5 bits (62), Expect = 0.38
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 24 IITGYLGAGKTTLLNYILTEQ 44
+I G GAGKTT+L + +
Sbjct: 9 LILGLDGAGKTTILYRLQVGE 29
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 28.2 bits (61), Expect = 0.39
Identities = 8/22 (36%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 22 VTIITGYLGAGKTTLLNYILTE 43
V I+ G GK+TL N ++ +
Sbjct: 3 VLIV-GRPNVGKSTLFNKLVKK 23
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 28.1 bits (61), Expect = 0.39
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDKKI 49
+ G +GKTT +N I + Q ++ +
Sbjct: 6 TLVGLQYSGKTTFVNVIASGQFNEDM 31
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 197
Score = 28.4 bits (62), Expect = 0.40
Identities = 14/91 (15%), Positives = 34/91 (37%), Gaps = 3/91 (3%)
Query: 21 PVTI-ITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWL 79
P T+ I G +G+GKTT LN+ E++ I ++ + + + ++W
Sbjct: 9 PFTVLIEGNIGSGKTTYLNHF--EKYKNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWA 66
Query: 80 ELKNGCLCCSVKDNGVKAIENLMLKRGKFDY 110
+ ++ + + + +
Sbjct: 67 MPFQSYVTLTMLQSHTAPTNKKLKIMERSIF 97
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 28.4 bits (63), Expect = 0.41
Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 16/108 (14%)
Query: 22 VTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKS---------VSVGDNG 72
I+ G G GKTT L I + + + + + + V +
Sbjct: 31 FMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSY 90
Query: 73 NLYEEWLELKNGCLCCSVKDNGVKAIENLMLKRGKFDYILLETTGLAD 120
LY N ++ + I+ + + + E GL +
Sbjct: 91 ALYPHMTVYDNIAFPLKLRKVPRQEIDQRVRE-------VAELLGLTE 131
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 28.1 bits (61), Expect = 0.43
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDK 47
++ G AGKTT+L E D
Sbjct: 6 LMLGLDNAGKTTILKKFNGEDVDT 29
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 28.3 bits (63), Expect = 0.44
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 22 VTIITGYLGAGKTTLLNYILTEQHDKKIAVILN 54
V I G G+GK+TL I + V+++
Sbjct: 31 VIGIVGRSGSGKSTLTKLIQRFYIPENGQVLID 63
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 28.6 bits (62), Expect = 0.49
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 21 PVTIITGYLGAGKTTLLNYI 40
+ +I G G+GK++LL+ I
Sbjct: 24 GINLIIGQNGSGKSSLLDAI 43
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase
(APS kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 28.1 bits (61), Expect = 0.49
Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 3/76 (3%)
Query: 21 PVTI-ITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWL 79
T+ +TG GAGKTT+ L E G+ + ++G + EE +
Sbjct: 19 GCTVWLTGLSGAGKTTVSM-ALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENV 77
Query: 80 ELKNGCLCCSVKDNGV 95
+ + D G+
Sbjct: 78 R-RIAEVAKLFADAGL 92
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 28.1 bits (61), Expect = 0.50
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 22 VTIITGYLGAGKTTLLNYILTE 43
V I+ G GK+TL N IL +
Sbjct: 11 VAIV-GRPNVGKSTLFNAILNK 31
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
1, different strains [TaxId: 10298]}
Length = 329
Score = 28.4 bits (63), Expect = 0.54
Identities = 19/152 (12%), Positives = 38/152 (25%), Gaps = 13/152 (8%)
Query: 19 PVPVTI-ITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDN---GNL 74
P + + I G G GKTT ++ I + M +G + N+
Sbjct: 2 PTLLRVYIDGPHGMGKTTTTQLLVALGSRDDIVYVP------EPMTYWRVLGASETIANI 55
Query: 75 YEEWLELKNGCLCCSVKDNGVKAIENLMLKRGKFDYILLETTGLADPGPIAKVFWLDKEL 134
Y L G + + + + M +L + + L
Sbjct: 56 YTTQHRLDQGEISAGDAAVVMTSAQITMGMPYAVTDAVLAPHIGGE-AGSSHAPPPALTL 114
Query: 135 GSD--IYLDGIVTVVDCKHTIDVSFPDYFSIY 164
D + ++ +
Sbjct: 115 IFDRHPIAALLCYPAARYLMGSMTPQAVLAFV 146
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 28.1 bits (61), Expect = 0.54
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDKKIAVIL 53
+TG G GKTTL++ + V
Sbjct: 5 FLTGPPGVGKTTLIHKASEVLKSSGVPVDG 34
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b,
N-terminal (G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 28.1 bits (61), Expect = 0.55
Identities = 9/26 (34%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 16 ELQPVPVTIITGYLGAGKTTLLNYIL 41
+++ V+++ G++ GKTTLL++I
Sbjct: 2 KIRSPIVSVL-GHVDHGKTTLLDHIR 26
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase
TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 27.8 bits (60), Expect = 0.55
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 24 IITGYLGAGKTTLLNYILTEQ 44
+I G AGK++LLN + +
Sbjct: 5 VIAGRPNAGKSSLLNALAGRE 25
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 27.8 bits (60), Expect = 0.59
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Query: 22 VTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFG 57
+ I+ G GK+TLLN +L +KI++ +
Sbjct: 8 IAIV-GRPNVGKSTLLNKLL----GQKISITSRKAQ 38
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 28.0 bits (61), Expect = 0.59
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 22 VTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGE 58
V ++TG G G TT + + + + FG
Sbjct: 3 VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGS 39
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 27.6 bits (60), Expect = 0.63
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 24 IITGYLGAGKTTLLNYILTE 43
+I G GK+TLLN +L E
Sbjct: 4 VIVGKPNVGKSTLLNRLLNE 23
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein
TrwB {Escherichia coli [TaxId: 562]}
Length = 433
Score = 28.0 bits (61), Expect = 0.67
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 23 TIITGYLGAGKTTLLNYILTEQHDKKIAVIL 53
++ G G GK+ LL + + +++
Sbjct: 53 LLVNGATGTGKSVLLRELAYTGLLRGDRMVI 83
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 27.7 bits (61), Expect = 0.67
Identities = 18/87 (20%), Positives = 27/87 (31%), Gaps = 3/87 (3%)
Query: 22 VTIITGYLGAGKTTLLNYILT-EQHDKKIAVILNEFGEGSAMEKSVS--VGDNGNLYEEW 78
+I G GAGKT L I D ++ + + EK V N +L+
Sbjct: 28 YFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHM 87
Query: 79 LELKNGCLCCSVKDNGVKAIENLMLKR 105
KN +K +
Sbjct: 88 NVKKNLEFGMRMKKIKDPKRVLDTARD 114
>d1rf6a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP)
synthase {Streptococcus pneumoniae [TaxId: 1313]}
Length = 427
Score = 27.9 bits (61), Expect = 0.73
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 141 DGIVTVVDCKHTIDVSFPDYFSIYLSIL 168
DG V + + I+ S+P +F S++
Sbjct: 399 DGEVELDRAEA-INTSYPSFFDDLESLI 425
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 27.6 bits (61), Expect = 0.73
Identities = 18/102 (17%), Positives = 30/102 (29%), Gaps = 10/102 (9%)
Query: 22 VTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVG---DNGNLYEEW 78
+ G G GK+TLL I + + + E VG + LY
Sbjct: 28 FVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHL 87
Query: 79 LELKNGCLCCSVKDNGVKAIENLMLKRGKFDYILLETTGLAD 120
+N + + I + + + E LA
Sbjct: 88 SVAENMSFGLKLAGAKKEVINQRVNQ-------VAEVLQLAH 122
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 27.4 bits (59), Expect = 0.77
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 24 IITGYLGAGKTTLLNYIL 41
I G GK+TL+ +
Sbjct: 4 IFAGRSNVGKSTLIYRLT 21
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 27.4 bits (59), Expect = 0.77
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 16 ELQPVPVTIITGYLGAGKTTLLNYILTEQH 45
+ V G AGK++ LN + ++
Sbjct: 13 SDTGIEVAFA-GRSNAGKSSALNTLTNQKS 41
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 27.6 bits (60), Expect = 0.79
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDKKIAVI 52
++ G AGKTTLL + +E
Sbjct: 20 LLLGLDNAGKTTLLKQLASEDISHITPTQ 48
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 27.4 bits (59), Expect = 0.80
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDK 47
+ G AGKTTLL+ + ++ +
Sbjct: 17 VFLGLDNAGKTTLLHMLKDDRLGQ 40
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895
{Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 27.6 bits (61), Expect = 0.82
Identities = 14/33 (42%), Positives = 15/33 (45%)
Query: 22 VTIITGYLGAGKTTLLNYILTEQHDKKIAVILN 54
V G G GKTTLL I T K +I N
Sbjct: 29 VVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYN 61
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 27.3 bits (59), Expect = 0.82
Identities = 10/91 (10%), Positives = 20/91 (21%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLELKN 83
IITG G GK+T + + + + D
Sbjct: 6 IITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDL 65
Query: 84 GCLCCSVKDNGVKAIENLMLKRGKFDYILLE 114
+++ V + +
Sbjct: 66 TVNFLLAQNDVVLDYIAFPDEAEALAQTVQA 96
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 27.1 bits (59), Expect = 0.87
Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 8/70 (11%)
Query: 17 LQPVP-VTIITGYLGAGKTTL-------LNYILTEQHDKKIAVILNEFGEGSAMEKSVSV 68
L P P V + G+ GAGK+T Y+ + + + + V
Sbjct: 10 LSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSSCQAALRQGKRVV 69
Query: 69 GDNGNLYEEW 78
DN N
Sbjct: 70 IDNTNPDVPS 79
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 27.2 bits (60), Expect = 0.95
Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 7/102 (6%)
Query: 22 VTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLEL 81
+ + G GAGKTT L+ I +K +I N + ++ + E
Sbjct: 34 IVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIF 93
Query: 82 KNGCLCCSVKDNGVKAIENLMLKRG---KFDYILLETTGLAD 120
+V +N + N K G ++I L +
Sbjct: 94 PE----LTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKE 131
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 27.2 bits (59), Expect = 0.95
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 19 PVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVI 52
V + ++ G++ GKTTL+ I K +
Sbjct: 8 EVNIGVV-GHVDHGKTTLVQAITGIWTSKHSEEL 40
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus
influenzae [TaxId: 727]}
Length = 158
Score = 27.0 bits (59), Expect = 0.95
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 12 LVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDK 47
L+ + + + G LGAGKTTL +L +
Sbjct: 25 LLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQ 60
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 27.3 bits (59), Expect = 0.96
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 5/29 (17%)
Query: 9 VPDLVPAELQPVPVTIITGYLGAGKTTLL 37
+P++V + + GAGK+ L
Sbjct: 23 LPNMVAGTV-----GALVSPGGAGKSMLA 46
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 27.2 bits (60), Expect = 1.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 22 VTIITGYLGAGKTTLLNYIL 41
+ ITG G+GKT+LL IL
Sbjct: 64 MLAITGSTGSGKTSLLMLIL 83
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima
[TaxId: 2336]}
Length = 308
Score = 27.3 bits (59), Expect = 1.0
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 22 VTIITGYLGAGKTTLL---NYILTEQHDKKI 49
VT I G G+GK+ ++ ++ EQ K++
Sbjct: 26 VTAIVGPNGSGKSNIIDAIKWVFGEQSKKEL 56
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle
domain {Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 26.9 bits (58), Expect = 1.1
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 25 ITGYLGAGKTTLLNYILTEQ 44
+ GY AGK++LL +
Sbjct: 6 LVGYPNAGKSSLLAAMTRAH 25
>d1g6sa_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP)
synthase {Escherichia coli [TaxId: 562]}
Length = 427
Score = 27.6 bits (60), Expect = 1.1
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 144 VTVVDCKHTIDVSFPDYFSIYLSI 167
VT++D K +FPDYF I
Sbjct: 401 VTILDPKC-TAKTFPDYFEQLARI 423
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 26.9 bits (58), Expect = 1.1
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 21 PVTIITGYLGAGKTTL 36
P ++ G G+GK+T+
Sbjct: 2 PKAVLVGLPGSGKSTI 17
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 288
Score = 27.2 bits (60), Expect = 1.1
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 20 VPVTIITGYLGAGKTTLLNYI--LTEQHDKKIAVI 52
P+ +TG GAG +T+ + + + K I
Sbjct: 4 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSI 38
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 26.9 bits (58), Expect = 1.1
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 24 IITGYLGAGKTTLLNYILTEQHD 46
II G AGKTT+L +
Sbjct: 19 IIVGLDNAGKTTILYQFSMNEVV 41
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 27.2 bits (60), Expect = 1.1
Identities = 12/53 (22%), Positives = 23/53 (43%)
Query: 2 DSDSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILN 54
+ D V + L+P VT + G G+GK+T+ + ++L+
Sbjct: 22 PNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLD 74
>d3cr3a1 a.208.1.1 (A:1-192) PTS-dependent dihydroxyacetone kinase,
ADP-binding subunit DhaL {Lactococcus lactis [TaxId:
1358]}
Length = 192
Score = 26.9 bits (59), Expect = 1.1
Identities = 11/52 (21%), Positives = 22/52 (42%)
Query: 80 ELKNGCLCCSVKDNGVKAIENLMLKRGKFDYILLETTGLADPGPIAKVFWLD 131
+L+ + VKA L+ +G+ Y+ + G DPG + + +
Sbjct: 134 DLQTDSASKDNLEKVVKASAGLLATKGRASYLGERSIGHIDPGTQSSAYLFE 185
>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus
[TaxId: 2261]}
Length = 329
Score = 27.2 bits (59), Expect = 1.2
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 22 VTIITGYLGAGKTTLL---NYILTEQHDKKI 49
T I G G+GK+ + ++L K +
Sbjct: 28 FTAIVGANGSGKSNIGDAILFVLGGLSAKAM 58
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 276
Score = 27.0 bits (59), Expect = 1.2
Identities = 8/20 (40%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 22 VTIITGYLGAGKTTLLNYIL 41
+ I ++ AGKTT IL
Sbjct: 9 IGIA-AHIDAGKTTTTERIL 27
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 27.0 bits (58), Expect = 1.2
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 25 ITGYLGAGKTTLLNYILTEQHDKKI 49
+TGY+ +GK + + + +
Sbjct: 11 LTGYMNSGKDAIARALQVTLNQQGG 35
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus
[TaxId: 10335]}
Length = 331
Score = 26.9 bits (59), Expect = 1.4
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 25 ITGYLGAGKTTLLNYILTEQHDKKIAVIL 53
+ G G GKTT L ++L
Sbjct: 10 LDGAYGIGKTTAAEEFLHHFAITPNRILL 38
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 27.0 bits (58), Expect = 1.4
Identities = 9/45 (20%), Positives = 16/45 (35%)
Query: 17 LQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSA 61
L+ VT G G+GKT +++ + + E
Sbjct: 31 LESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGE 75
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 26.5 bits (57), Expect = 1.4
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDKKIA 50
++ G AGKTT+L + + I
Sbjct: 4 LMVGLDAAGKTTILYKLKLGEIVTTIP 30
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 26.6 bits (58), Expect = 1.5
Identities = 17/109 (15%), Positives = 31/109 (28%), Gaps = 14/109 (12%)
Query: 14 PAELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGN 73
P E + V ++ G G GKTT + K+ G+ + G
Sbjct: 1 PVEPKGR-VVLVVGVNGVGKTTTI---------AKLGRYYQNLGKKVMFCAGDTFRAAGG 50
Query: 74 LYEEWLELKNGCLCCSVKDNGVKAIE----NLMLKRGKFDYILLETTGL 118
+ + A +K +D + ++T G
Sbjct: 51 TQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQAMKARGYDLLFVDTAGR 99
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 26.6 bits (57), Expect = 1.6
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 25 ITGYLGAGKTTLLNYIL 41
I G++ GKTTL +
Sbjct: 10 IFGHIDHGKTTLSKVLT 26
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle
domain {Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 26.4 bits (57), Expect = 1.6
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 25 ITGYLGAGKTTLLNYILTEQ 44
+ G+ GK+TLL+ + + +
Sbjct: 6 LVGFPSVGKSTLLSVVSSAK 25
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 26.6 bits (57), Expect = 1.6
Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 21 PVTI-ITGYLGAGKTTLLNYI 40
+ + I G +GKTTL N +
Sbjct: 22 RLVLGIDGLSRSGKTTLANQL 42
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 26.7 bits (59), Expect = 1.6
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 22 VTIITGYLGAGKTTLLNYIL 41
G G GK+TL+N I
Sbjct: 46 TVAFVGMSGGGKSTLINLIP 65
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 251
Score = 26.6 bits (57), Expect = 1.6
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 22 VTIITGYLGAGKTTLLNYILTEQHDKK 48
+T + G GK+ L + +
Sbjct: 36 ITELFGEFRTGKSQLCHTLAVTCQIPL 62
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 26.5 bits (57), Expect = 1.7
Identities = 5/20 (25%), Positives = 13/20 (65%)
Query: 24 IITGYLGAGKTTLLNYILTE 43
+++G+ G+GK+T+ +
Sbjct: 8 LLSGHPGSGKSTIAEALANL 27
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 208
Score = 26.6 bits (57), Expect = 1.7
Identities = 10/36 (27%), Positives = 13/36 (36%)
Query: 25 ITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGS 60
I G GAGK TL+ + +V F
Sbjct: 5 IEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYG 40
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 26.4 bits (58), Expect = 1.8
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 22 VTIITGYLGAGKTTLLNYIL 41
+ G G GK+T+ + +
Sbjct: 30 IIAFAGPSGGGKSTIFSLLE 49
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Archaeon Pyrococcus abyssi
[TaxId: 29292]}
Length = 195
Score = 26.5 bits (57), Expect = 1.8
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 18 QP-VPVTIITGYLGAGKTTLLNYILTEQHDKKIA 50
Q V + ++ G++ GKTTL + D
Sbjct: 3 QAEVNIGMV-GHVDHGKTTLTKALTGVWTDTHSE 35
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 26.7 bits (58), Expect = 1.9
Identities = 23/165 (13%), Positives = 51/165 (30%), Gaps = 18/165 (10%)
Query: 24 IITGYLGAGKTTLLNYILTEQ----HDKKIAVILNEFGEGSAMEKSVSVGDNGNLYE--E 77
++ G G GK++ +N I+ E+ + S ++++ D L E
Sbjct: 36 LVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGY 95
Query: 78 WLELKNGCLCCSVKDNGVKAIENLMLKRGKFDYILLETTGLADPGPIAKVFWLDKELGSD 137
++ + + D + + Y+ D + G
Sbjct: 96 INDMALNIIKSFLLDKTIDVL----------LYVDRLDAYRVDNLDKLVAKAITDSFGKG 145
Query: 138 IYLDGIV--TVVDCKHTIDVSFPDYFSIYLSILLSRLKELKVEQV 180
I+ IV T + + ++FS LL ++ +
Sbjct: 146 IWNKAIVALTHAQFSPPDGLPYDEFFSKRSEALLQVVRSGASLKK 190
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 26.4 bits (57), Expect = 1.9
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 22 VTIITGYLGAGKTT-LLNYILTEQHDKKIAVIL 53
+TI+ + GAGKT L I+ E + + ++
Sbjct: 11 LTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLI 43
>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase
{Bacteriophage T4 [TaxId: 10665]}
Length = 241
Score = 26.4 bits (57), Expect = 1.9
Identities = 4/25 (16%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 25 ITGYLGAGKTTLLNYILTEQHDKKI 49
++G +GK T ++ + +
Sbjct: 6 LSGVKRSGKDTTADF-IMSNYSAVK 29
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 26.6 bits (58), Expect = 2.0
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 22 VTIITGYLGAGKTTLLNYIL 41
I G GAGKTT + I
Sbjct: 33 RFGILGPSGAGKTTFMRIIA 52
>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding
protein 1 (GBP1), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 26.6 bits (58), Expect = 2.0
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 18 QPVPVTIITGYLGAGKTTLLNYILTEQH 45
QP+ V I G GK+ L+N + ++
Sbjct: 30 QPMVVVAIVGLYRTGKSYLMNKLAGKKK 57
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 26.5 bits (58), Expect = 2.0
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 22 VTIITGYLGAGKTTLLNYI 40
VT+I G G+GK+TL+N I
Sbjct: 32 VTLIIGPNGSGKSTLINVI 50
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 26.6 bits (57), Expect = 2.1
Identities = 10/44 (22%), Positives = 16/44 (36%)
Query: 22 VTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKS 65
+T + G G+GKT L + + LN E +
Sbjct: 38 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 81
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import
ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 240
Score = 26.1 bits (57), Expect = 2.2
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 22 VTIITGYLGAGKTTLLNYI 40
++ G GAGK+ L I
Sbjct: 26 YCVLLGPTGAGKSVFLELI 44
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId:
5076]}
Length = 208
Score = 26.3 bits (57), Expect = 2.2
Identities = 8/22 (36%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 21 PVTI-ITGYLGAGKTTLLNYIL 41
+TI +TG +GK+TL +
Sbjct: 24 GLTIWLTGLSASGKSTLAVELE 45
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 26.2 bits (56), Expect = 2.2
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDKKI 49
II G G GKT+L++ + +++ ++
Sbjct: 6 IILGDSGVGKTSLMHRYVNDKYSQQY 31
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 267
Score = 26.4 bits (57), Expect = 2.3
Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 22 VTIITGYLGAGKTTLLNYIL 41
V ++ G+ G+GKTTL +L
Sbjct: 5 VALV-GHAGSGKTTLTEALL 23
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 26.1 bits (56), Expect = 2.4
Identities = 12/112 (10%), Positives = 34/112 (30%), Gaps = 8/112 (7%)
Query: 21 PVTI-ITGYLGAGKTTLLNYIL-------TEQHDKKIAVILNEFGEGSAMEKSVSVGDNG 72
P I ++G +GK+++ I+ + K++ ++ + + + G
Sbjct: 2 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKG 61
Query: 73 NLYEEWLELKNGCLCCSVKDNGVKAIENLMLKRGKFDYILLETTGLADPGPI 124
+ + + L + + + E T P +
Sbjct: 62 QFNFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADV 113
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 26.1 bits (56), Expect = 2.4
Identities = 8/40 (20%), Positives = 14/40 (35%)
Query: 22 VTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSA 61
T+++G G GKT L + + E +
Sbjct: 28 STLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETP 67
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 26.3 bits (56), Expect = 2.4
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 17 LQPVPVTIITGYLGAGKTTLLNYIL 41
++ +T + G GKT + + +
Sbjct: 20 IETGSITEMFGEFRTGKTQICHTLA 44
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 25.9 bits (56), Expect = 2.6
Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 11/131 (8%)
Query: 22 VTIITGYLGAGKTT---LLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEW 78
V ++ G G GK T L Y ++ K+ ++ + +A+E+ +G +
Sbjct: 14 VIMLVGVQGTGKATTAGKLAYFYKKKG-FKVGLVGADVYRPAALEQLQQLGQQIGVPVYG 72
Query: 79 LELKNGCLCCSVKDNGVKAIENLMLKRGKFDYILLETTGLADPGPIAKVFWLDKELGSDI 138
+ GV+ + ++ D T G G A + K + I
Sbjct: 73 --EPGEKDVVGIAKRGVEKFLSEKMEIIIVD-----TAGRHGYGEEAALLEEMKNIYEAI 125
Query: 139 YLDGIVTVVDC 149
D + V+D
Sbjct: 126 KPDEVTLVIDA 136
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 26.0 bits (56), Expect = 2.6
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 21 PVTIITGYLGAGKTTLLNYIL 41
P + G AGK+++L +
Sbjct: 27 PQIAVVGGQSAGKSSVLENFV 47
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 184
Score = 25.8 bits (55), Expect = 2.6
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDKK 48
II G G GKT+L+N + ++ +
Sbjct: 6 IILGDSGVGKTSLMNQYVNKKFSNQ 30
>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 25.4 bits (55), Expect = 2.6
Identities = 7/34 (20%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 22 VTIITGYLGAGKTT-LLNYILTEQHDKKIAVILN 54
+ +I G + +GK+T L+ + Q + +++
Sbjct: 4 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 37
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC
transporter MsbA, C-terminal domain {Salmonella
typhimurium [TaxId: 90371]}
Length = 253
Score = 26.0 bits (57), Expect = 2.6
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 22 VTIITGYLGAGKTTLLNYIL 41
+ G G+GK+T+ + I
Sbjct: 43 TVALVGRSGSGKSTIASLIT 62
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 25.9 bits (55), Expect = 2.7
Identities = 5/29 (17%), Positives = 10/29 (34%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDKKIAVI 52
++ G G GK+ L + +
Sbjct: 5 LLLGAPGVGKSALARIFGGVEDGPEAEAA 33
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 26.1 bits (56), Expect = 2.8
Identities = 22/130 (16%), Positives = 42/130 (32%), Gaps = 4/130 (3%)
Query: 22 VTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSA--MEKSVSVGDNGNLYEEWL 79
+ + TG G GKT L++ + K IL + E A + + S G + E
Sbjct: 28 IILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQN 87
Query: 80 ELKNGCLCCSVKD--NGVKAIENLMLKRGKFDYILLETTGLADPGPIAKVFWLDKELGSD 137
LK C + ++ I++ + + + LA +
Sbjct: 88 LLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGY 147
Query: 138 IYLDGIVTVV 147
+ I +
Sbjct: 148 AKQEEITGLF 157
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 25.9 bits (55), Expect = 2.8
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 24 IITGYLGAGKTTLLNYI 40
+ G +GAGK+T+ +
Sbjct: 6 FLVGPMGAGKSTIGRQL 22
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 25.8 bits (55), Expect = 2.8
Identities = 5/33 (15%), Positives = 11/33 (33%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDKKIAVILNEF 56
++ G G GK+ L + + +
Sbjct: 10 VVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDS 42
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 25.9 bits (56), Expect = 2.9
Identities = 5/33 (15%), Positives = 14/33 (42%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDKKIAVILNEF 56
++ G +GK+T++ + + +F
Sbjct: 10 LLLGAGESGKSTIVKQMRILHVVLTSGIFETKF 42
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 25.7 bits (56), Expect = 3.0
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 22 VTIITGYLGAGKTTLLNYILTEQHDKKIAVILN 54
+ + G GAGKTT L I T V +
Sbjct: 30 IFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVF 62
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2),
N-terminal (G) domain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 341
Score = 25.9 bits (56), Expect = 3.1
Identities = 5/20 (25%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 22 VTIITGYLGAGKTTLLNYIL 41
+++I ++ GK+TL + ++
Sbjct: 20 MSVI-AHVDHGKSTLTDSLV 38
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter
jejuni [TaxId: 197]}
Length = 161
Score = 25.6 bits (55), Expect = 3.2
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 24 IITGYLGAGKTTLLNYI 40
+ G++G+GK+TL +
Sbjct: 4 VFIGFMGSGKSTLARAL 20
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 25.7 bits (55), Expect = 3.3
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDKKIAVI 52
++ G AGKTT+L + Q I +
Sbjct: 16 LMLGLDAAGKTTILYKLKLGQSVTTIPTV 44
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 209
Score = 25.7 bits (55), Expect = 3.4
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 30 GAGKTTLLNYILTEQHDKKIAVILNEFGEGS 60
AGK+T ++ L F E S
Sbjct: 13 RAGKSTQSRKLVEALCAAGHRAELLRFPERS 43
>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus
[TaxId: 274]}
Length = 191
Score = 25.7 bits (55), Expect = 3.5
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 25 ITGYLGAGKTTLLNYI 40
ITG +G+GK+T+ +
Sbjct: 8 ITGNIGSGKSTVAALL 23
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 25.8 bits (55), Expect = 3.6
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 22 VTIITGYLGAGKTTLL 37
T I G G+GK+ ++
Sbjct: 27 FTSIIGPNGSGKSNMM 42
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022,
N-terminal domain {Pyrococcus horikoshii [TaxId:
53953]}
Length = 239
Score = 25.5 bits (56), Expect = 3.6
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 22 VTIITGYLGAGKTTLLNYIL 41
++ G G GKTT L I
Sbjct: 34 FLVLLGPSGCGKTTTLRMIA 53
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 25.2 bits (54), Expect = 3.9
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDKK 48
++ G G GKT L+
Sbjct: 9 VLIGNAGVGKTCLVRRFTQGLFPPG 33
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 25.9 bits (56), Expect = 4.0
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 24 IITGYLGAGKTTLLNYIL 41
+ TG GAGKT ++
Sbjct: 95 LCTGESGAGKTENTKKVI 112
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 25.3 bits (55), Expect = 4.1
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 22 VTIITGYLGAGKTTLLNYIL 41
+ + G GAGK+TLL +
Sbjct: 27 ILHLVGPNGAGKSTLLARMA 46
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 25.3 bits (54), Expect = 4.3
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGE 58
++ G G+GKT+L + I E I + + F +
Sbjct: 36 LLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQ 70
>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal
domain {Ureaplasma urealyticum [TaxId: 2130]}
Length = 139
Score = 25.1 bits (54), Expect = 4.3
Identities = 13/112 (11%), Positives = 27/112 (24%), Gaps = 14/112 (12%)
Query: 22 VTIITGYLGAGKTT-LLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLE 80
+ ITG + AGKT L+ + ++ ++ D ++
Sbjct: 4 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFK------------PKIDTRSIRNIQSR 51
Query: 81 LKNGCLCCSV-KDNGVKAIENLMLKRGKFDYILLETTGLADPGPIAKVFWLD 131
V + + I ++ D L
Sbjct: 52 TGTSLPSVEVESAPEILNYIMSNSFNDETKVIGIDEVQFFDDRICEVANILA 103
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain
{Caenorhabditis elegans [TaxId: 6239]}
Length = 277
Score = 25.5 bits (55), Expect = 4.6
Identities = 7/47 (14%), Positives = 16/47 (34%)
Query: 1 MDSDSDSEVPDLVPAELQPVPVTIITGYLGAGKTTLLNYILTEQHDK 47
+ D + L + G G+GK+ + + L++
Sbjct: 25 REYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQL 71
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 25.2 bits (55), Expect = 4.6
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 22 VTIITGYLGAGKTTLLNYI 40
V I G G+GK+T L I
Sbjct: 30 VISIIGSSGSGKSTFLRCI 48
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 25.1 bits (53), Expect = 4.7
Identities = 4/26 (15%), Positives = 10/26 (38%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDKKI 49
++ G GK++++ K
Sbjct: 6 VVVGNGAVGKSSMIQRYCKGIFTKDY 31
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia
chrysanthemi [TaxId: 556]}
Length = 170
Score = 24.9 bits (53), Expect = 4.8
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 24 IITGYLGAGKTTL 36
+ G G G TT+
Sbjct: 6 FMVGARGCGMTTV 18
>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release
factor ERF2, G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 245
Score = 25.2 bits (54), Expect = 4.9
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 3 SDSDSEVPDLVPAELQPVP---VTIITGYLGAGKTTLLNYIL 41
+D +EV + ++ + I G++ AGK+TL IL
Sbjct: 5 TDLQNEVDQELLKDMYGKEHVNIVFI-GHVDAGKSTLGGNIL 45
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 24.7 bits (53), Expect = 5.1
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDKK 48
++ G G GK+ LL + ++ +
Sbjct: 6 LLIGDSGVGKSCLLVRFVEDKFNPS 30
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 25.4 bits (55), Expect = 5.3
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 24 IITGYLGAGKTTLLNYIL 41
+ITG GAGKT ++
Sbjct: 129 LITGESGAGKTENTKKVI 146
>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal
domain {Clostridium acetobutylicum [TaxId: 1488]}
Length = 141
Score = 24.7 bits (53), Expect = 5.3
Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
Query: 22 VTIITGYLGAGKTT-LLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEWLE 80
V +I G + +GK+ L+ I + K+ + + K V G E+ +
Sbjct: 9 VEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK-PEIDNRYSKEDVVSHMGE-KEQAVA 66
Query: 81 LKNGCLCCSVKDNGVKAI 98
+KN + + I
Sbjct: 67 IKNSREILKYFEEDTEVI 84
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 25.2 bits (53), Expect = 5.5
Identities = 10/37 (27%), Positives = 13/37 (35%)
Query: 18 QPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILN 54
P + G G GKT L + DK A +
Sbjct: 41 HHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVY 77
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 24.8 bits (53), Expect = 5.7
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDKK 48
++ G G GK+ LL+ + + +
Sbjct: 8 VLIGDSGVGKSNLLSRFTRNEFNLE 32
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 24.8 bits (53), Expect = 5.7
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDKKI 49
+I G G GK++LL + D ++
Sbjct: 11 LIIGESGVGKSSLLLRFTDDTFDPEL 36
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania
major [TaxId: 5664]}
Length = 174
Score = 25.0 bits (53), Expect = 5.9
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 24 IITGYLGAGKTTLLNYI 40
+ITG G GKT++ I
Sbjct: 9 LITGTPGTGKTSMAEMI 25
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 25.1 bits (54), Expect = 6.2
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 24 IITGYLGAGKTTLLNYIL 41
+ITG GAGKT ++
Sbjct: 127 LITGESGAGKTVNTKRVI 144
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 24.6 bits (52), Expect = 6.2
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 24 IITGYLGAGKTTLLNYI 40
I G +GK+ L+N +
Sbjct: 11 AILGGESSGKSVLVNKL 27
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 25.1 bits (54), Expect = 6.2
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 24 IITGYLGAGKTTLLNYIL 41
I++G GAGKT Y +
Sbjct: 98 IVSGESGAGKTVSAKYAM 115
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 25.0 bits (53), Expect = 6.5
Identities = 10/17 (58%), Positives = 10/17 (58%)
Query: 20 VPVTIITGYLGAGKTTL 36
PV I G GAGK TL
Sbjct: 3 APVITIDGPSGAGKGTL 19
>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus
influenzae [TaxId: 727]}
Length = 205
Score = 24.8 bits (53), Expect = 6.5
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 25 ITGYLGAGKTTLLNYI 40
+TG +G+GKTT+ N
Sbjct: 7 LTGGIGSGKTTIANLF 22
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 24.7 bits (53), Expect = 6.5
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDKK 48
++ G G GKT +L + +
Sbjct: 10 LLIGDSGVGKTCVLFRFSEDAFNST 34
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 24.7 bits (53), Expect = 6.7
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 23 TIITGYLGAGKTTLLNYIL 41
+ + G G GK++LLN I
Sbjct: 98 STMAGLSGVGKSSLLNAIN 116
>d1w91a1 b.71.1.2 (A:4-13,A:361-502) Beta-D-xylosidase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 152
Score = 24.4 bits (53), Expect = 6.8
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 19/63 (30%)
Query: 38 NYILTEQHDKKIAVIL----NEFGEGSAMEKSVSVG---------------DNGNLYEEW 78
I+T + D IA +L E GEG E + + GN + W
Sbjct: 18 EMIVTRRKDGSIAAVLWNLVMEKGEGLTKEVQLVIPVSFSAVFIKRQIVNEQYGNAWRVW 77
Query: 79 LEL 81
++
Sbjct: 78 KQM 80
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 24.6 bits (52), Expect = 6.8
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDKKI 49
+ G G GK++++ + + D I
Sbjct: 8 CLLGDTGVGKSSIMWRFVEDSFDPNI 33
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 25.1 bits (54), Expect = 7.0
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 24 IITGYLGAGKTTLLNYIL 41
+ITG GAGKT ++
Sbjct: 125 LITGESGAGKTENTKKVI 142
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 24.6 bits (52), Expect = 7.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDKK 48
++ G G GKTT + LT + +KK
Sbjct: 7 VLVGDGGTGKTTFVKRHLTGEFEKK 31
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 24.5 bits (52), Expect = 7.0
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDKKIAVILNEF 56
++ G G GK+ L +T +K + +F
Sbjct: 7 VVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF 39
>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli
[TaxId: 562]}
Length = 208
Score = 24.8 bits (53), Expect = 7.1
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 25 ITGYLGAGKTTLLNYI 40
+TG +G+GK+T+ N
Sbjct: 8 LTGGIGSGKSTVANAF 23
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 24.7 bits (53), Expect = 7.2
Identities = 13/72 (18%), Positives = 24/72 (33%), Gaps = 11/72 (15%)
Query: 16 ELQPVPVTIITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLY 75
T+ G G GK++LLN I E + + + + G + +
Sbjct: 93 PHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS-----------EHLGRGKHTTRH 141
Query: 76 EEWLELKNGCLC 87
E + G +
Sbjct: 142 VELIHTSGGLVA 153
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 24.5 bits (52), Expect = 7.2
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDKK 48
+ G G GKTT L + + K
Sbjct: 9 LALGDSGVGKTTFLYRYTDNKFNPK 33
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 24.5 bits (52), Expect = 7.3
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDKK 48
++ G G GK+ LL+ + ++
Sbjct: 9 LVIGNAGTGKSCLLHQFIEKKFKDD 33
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 24.5 bits (52), Expect = 7.5
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDKK 48
+ G GKT+L+ + + D
Sbjct: 4 VFLGEQSVGKTSLITRFMYDSFDNT 28
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 25.0 bits (54), Expect = 7.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 24 IITGYLGAGKTTLLNYIL 41
II+G GAGKT I+
Sbjct: 90 IISGESGAGKTEASKKIM 107
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 24.5 bits (52), Expect = 7.7
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDKK 48
+I G GKT+ L +
Sbjct: 9 LIIGNSSVGKTSFLFRYADDSFTPA 33
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 24.4 bits (52), Expect = 7.7
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDKK 48
++ G G GK+ LL + +
Sbjct: 10 LLIGNSGVGKSCLLLRFSDDTYTND 34
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 24.8 bits (53), Expect = 8.1
Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 25 ITGYLGAGKTTLLNYI---LTEQHDKKIAVIL 53
+G G+GK+ I L E++ + ++
Sbjct: 32 FSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGY 63
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 24.6 bits (52), Expect = 8.5
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 20 VPVTIITGYLGAGKTTLLNYI 40
V V + G GAGK T +
Sbjct: 8 VSVIFVLGGPGAGKGTQCEKL 28
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 24.2 bits (51), Expect = 8.7
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 24 IITGYLGAGKTTLLNYILTEQHD 46
+I G GAGKTT+L + +
Sbjct: 21 LILGLDGAGKTTILYRLQIGEVV 43
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 24.3 bits (51), Expect = 8.9
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 22 VTIITGYLGAGKTTLLNYILTE 43
+T G GKT L + +
Sbjct: 39 ITEAFGEFRTGKTQLSHTLCVT 60
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 241
Score = 24.6 bits (52), Expect = 9.0
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 25 ITGYLGAGKTTLLNYILTEQHDKKIAVILNEFGEGS 60
I G + AGK+T +N + D ++
Sbjct: 7 IEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNV 42
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 24.3 bits (52), Expect = 9.2
Identities = 15/93 (16%), Positives = 34/93 (36%), Gaps = 6/93 (6%)
Query: 22 VTIITGYLGAGKTTL---LNYILTEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEEW 78
+ + G G+GKTT L + ++ ++ + +A E+ +G+ +
Sbjct: 12 LWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLVAADTQRPAAREQLRLLGE--KVGVPV 68
Query: 79 LELKNGCLCCSVKDNGVKAIENLMLKRGKFDYI 111
LE+ +G S++ + D
Sbjct: 69 LEVMDGESPESIRRRVEEKARLEARDLILVDTA 101
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top
tamarin (Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 24.1 bits (51), Expect = 9.3
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDKK 48
I+ G G GK+ L + ++ +
Sbjct: 8 IMVGSGGVGKSALTLQFMYDEFVED 32
>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 222
Score = 24.4 bits (52), Expect = 9.5
Identities = 17/101 (16%), Positives = 29/101 (28%), Gaps = 9/101 (8%)
Query: 24 IITGYLGAGKTTLLNYIL------TEQHDKKIAVILNEFGEGSAMEKSVSVGDNGNLYEE 77
+ G + GK+TL+ +L E H + I + G + D L E
Sbjct: 13 LTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVD--GLQAE 70
Query: 78 WLELKNGCLCCSVKDNGVKAIENLMLKRGKFDYILLETTGL 118
+ + + + G Y TG
Sbjct: 71 REQGITIDVAYRYFSTAKRKF-IIADTPGHEQYTRNMATGA 110
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 24.2 bits (51), Expect = 9.6
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDKKIAVILNEF 56
++ G GKT LL+ + + + E
Sbjct: 6 VVVGDSQCGKTALLHVFAKDCFPENYVPTVFEN 38
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 24.2 bits (51), Expect = 9.8
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDKK 48
+I G GKT LL +Q +
Sbjct: 6 VIVGDGACGKTCLLIVNSKDQFPEV 30
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 24.2 bits (51), Expect = 9.8
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDKK 48
I+ G GKT L + +
Sbjct: 6 IVIGDSNVGKTCLTYRFCAGRFPDR 30
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 24.1 bits (51), Expect = 9.9
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 24 IITGYLGAGKTTLLNYILTEQHDKK 48
I+ G G GK++L+N +T + D +
Sbjct: 10 ILLGDGGVGKSSLMNRYVTNKFDTQ 34
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.139 0.411
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 712,663
Number of extensions: 33176
Number of successful extensions: 312
Number of sequences better than 10.0: 1
Number of HSP's gapped: 310
Number of HSP's successfully gapped: 186
Length of query: 184
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 104
Effective length of database: 1,309,196
Effective search space: 136156384
Effective search space used: 136156384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.8 bits)