Query psy7721
Match_columns 160
No_of_seqs 103 out of 198
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 17:08:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7721.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7721hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2754|consensus 100.0 7.2E-52 1.6E-56 358.4 11.3 152 1-154 128-281 (443)
2 PF03345 DDOST_48kD: Oligosacc 100.0 3.8E-49 8.2E-54 349.2 11.9 149 1-154 104-255 (423)
3 TIGR03521 GldG gliding-associa 92.5 0.3 6.5E-06 45.2 6.0 93 59-152 371-495 (552)
4 KOG3861|consensus 90.8 0.35 7.6E-06 42.8 4.3 76 46-150 162-239 (438)
5 PF10632 He_PIG_assoc: He_PIG 45.8 20 0.00044 20.7 2.0 18 33-50 3-20 (29)
6 PF00614 PLDc: Phospholipase D 24.8 36 0.00078 19.2 0.7 11 106-116 15-25 (28)
7 COG2947 Uncharacterized conser 16.3 14 0.00031 29.2 -2.9 46 66-117 6-51 (156)
8 COG4250 Predicted sensor prote 14.6 1.5E+02 0.0032 24.8 2.4 44 63-106 79-128 (226)
9 PF01747 ATP-sulfurylase: ATP- 14.1 96 0.0021 25.6 1.2 9 95-103 22-30 (215)
10 COG3225 GldG ABC-type uncharac 12.6 1.4E+02 0.0029 28.2 1.9 42 102-151 431-472 (538)
No 1
>KOG2754|consensus
Probab=100.00 E-value=7.2e-52 Score=358.45 Aligned_cols=152 Identities=50% Similarity=0.767 Sum_probs=146.0
Q ss_pred CCCCCCeeeeccCCCC-CCCCCccEEEeCCCCCcCCceeecCCC-CCCeeEeeeeeeeCCCCCeeEeeeecCCceeecCC
Q psy7721 1 MDEEGAAVIDHLNYDV-KDAEKHTLIVADPSNLVDSEVIVGKKP-SSPLLYQGTGLIVDPANPLVLSVLSADSSAYSYNP 78 (160)
Q Consensus 1 ~d~~~t~viDHfn~d~-~~~~~h~~i~~~~~nli~~~~I~~~~~-~~pvlf~Gvg~~l~~~npL~~pIL~A~~TsyS~~~ 78 (160)
|||+|++||||+|||. +|.++|++|.+ +|++.+++|+|... ..||||||+||+++|+|||++|||+|++|||||+|
T Consensus 128 ~~e~~~~ViDH~~~d~s~~sgdhtli~~--~nl~~~~~Ivg~~~~~~piLfrgig~~l~~~n~lvl~IL~a~~TsYs~np 205 (443)
T KOG2754|consen 128 FDEEGAAVIDHHNYDVSSDSGDHTLIVA--DNLLKAPYIVGKSKRAAPILFRGIGHVLGPTNPLVLPILRASPTSYSYNP 205 (443)
T ss_pred cCcccceeeeeeeccccCCCCCeEEEee--cccccCceeeccccccCCeeeecchhhcCCCCcceeeeecCCCcceecCc
Confidence 7999999999999999 79999999998 89999999999876 68999999999999999999999999999999999
Q ss_pred CCCCccCCcccccceeEEEEEecccCcEEEEEeccccccccccccccccccCCccccCcchHHHHHHHhccccccc
Q psy7721 79 DKPIKEYPHAVGKNTVLVAALQARNNARVVFSGSLYFFSNEAFNSPVQKAIGGKKFDKSSNEALCTSSLTKHSTVL 154 (160)
Q Consensus 79 ~~~~~~~~~~~G~q~~LVsa~QarNNARv~~~GS~d~fSd~~f~~~v~~~~~~~~~~~sgN~~F~~~L~~Wt~~~~ 154 (160)
+.+++++||++|+|+.||++||+||||||+|+||+|||||+||.+.++.++++..++++||++||++|++|+|+--
T Consensus 206 ~a~~s~np~a~Gs~~~LV~~lQarNNARvv~sGS~d~fsd~~~~~~~~~~~~~~~~~~sgN~~fA~~lskWvF~E~ 281 (443)
T KOG2754|consen 206 EAKVSCNPWAAGSQTLLVSGLQARNNARVVFSGSSDFFSDEFFSSQVQSASSSVQYEQSGNQEFATELSKWVFKEK 281 (443)
T ss_pred ccccccCccccccceEEEEeeeccCCceEEEeccHHhhhcccccccccccCCcchhhccccHHHHHHHHHhhhccc
Confidence 9999999999999999999999999999999999999999999999999988888999999999999999999843
No 2
>PF03345 DDOST_48kD: Oligosaccharyltransferase 48 kDa subunit beta; InterPro: IPR005013 During N-linked glycosylation of proteins, oligosaccharide chains are assembled on the carrier molecule dolichyl pyrophosphate in the following order: 2 molecules of N-acetylglucosamine (GlcNAc), 9 molecules of mannose, and 3 molecules of glucose. These 14-residue oligosaccharide cores are then transferred to asparagine residues on nascent polypeptide chains in the endoplasmic reticulum (ER). As proteins progress through the Golgi apparatus, the oligosaccharide cores are modified by trimming and extension to generate a diverse array of glycosylated proteins [, ]. The oligosaccharyl transferase complex (OST complex) 2.4.1.119 from EC transfers 14-sugar branched oligosaccharides from dolichyl pyrophosphate to asparagine residues []. The complex contains nine protein subunits: Ost1p, Ost2p, Ost3p, Ost4p, Ost5p, Ost6p, Stt3p, Swp1p, and Wbp1p, all of which are integral membrane proteins of the ER. The OST complex interacts with the Sec61p pore complex [] involved in protein import into the ER. This entry represents subunits OST3 and OST6. OST3 is homologous to OST6 [], and several lines of evidence indicate that they are alternative members of the OST complex. Disruption of both OST3 and OST6 causes severe underglycosylation of soluble and membrane-bound glycoproteins and a defect in the assembly of the complex. Hence, the function of these genes seems to be essential for recruiting a fully active complex necessary for efficient N-glycosylation []. This entry also includes the magnesium transporter protein 1, also known as OST3 homologue B, which might be involved in N-glycosylation through its association with the oligosaccharyl transferase (OST) complex. Wbp1p is the beta subunit of the OST complex, one of the original six subunits purified []. Wbp1 is essential [, ], but conditional mutants have decreased transferase activity [, ]. Wbp1p is homologous to mammalian OST48 [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane
Probab=100.00 E-value=3.8e-49 Score=349.16 Aligned_cols=149 Identities=50% Similarity=0.762 Sum_probs=138.1
Q ss_pred CCCCCCeeeeccCCCC-CCCCCccEEEeCCCCCcCCceeecCCCCCCeeEeeeeeeeCCCCCeeEeeeecCCceeecCCC
Q psy7721 1 MDEEGAAVIDHLNYDV-KDAEKHTLIVADPSNLVDSEVIVGKKPSSPLLYQGTGLIVDPANPLVLSVLSADSSAYSYNPD 79 (160)
Q Consensus 1 ~d~~~t~viDHfn~d~-~~~~~h~~i~~~~~nli~~~~I~~~~~~~pvlf~Gvg~~l~~~npL~~pIL~A~~TsyS~~~~ 79 (160)
|||+|++|||||||+. ++.++|+++++++++++.++.|++... .||+|||+||++++ |||++|||+||+|||||+++
T Consensus 104 ~~~~~~~viDHf~~~~~~~~~~h~~i~~~~~~~i~~~~~~~~~~-~pilf~G~g~~l~~-n~l~~pIL~a~~Tays~~~~ 181 (423)
T PF03345_consen 104 FDPKGSKVIDHFNYDSSSDSEDHTVIVLSSNNLIKSSVIVGFKT-KPILFRGVGHLLDN-NPLVFPILRAPSTAYSYDPK 181 (423)
T ss_pred ECCCCCEEEcCCCCcccccccCcceEEecCCccccCcccccCCC-CcEEEEeEEEEecC-CCceeeeeccCCceeccccc
Confidence 5899999999999999 688999999988889999999988765 89999999999996 99999999999999999999
Q ss_pred CCCc--cCCcccccceeEEEEEecccCcEEEEEeccccccccccccccccccCCccccCcchHHHHHHHhccccccc
Q psy7721 80 KPIK--EYPHAVGKNTVLVAALQARNNARVVFSGSLYFFSNEAFNSPVQKAIGGKKFDKSSNEALCTSSLTKHSTVL 154 (160)
Q Consensus 80 ~~~~--~~~~~~G~q~~LVsa~QarNNARv~~~GS~d~fSd~~f~~~v~~~~~~~~~~~sgN~~F~~~L~~Wt~~~~ 154 (160)
+++. ++||++|+|++||+|||||||||++|+||+|||||+||+++|+.. .+..++||++||++|++|||+..
T Consensus 182 ~~~~~~~~~~~~G~q~~LVsa~QarNNARv~~~GS~d~fsd~~f~~~v~~~---~~~~~~~N~~f~~~l~~WtF~e~ 255 (423)
T PF03345_consen 182 EPIEEYDDPWAAGSQISLVSAFQARNNARVVFSGSLDMFSDEFFDSKVQKA---GKKSKSGNREFAKELSKWTFQEK 255 (423)
T ss_pred cccccccchhhccccceEEEEEecccCcEEEEEecHHHhccHHHhhhhhhc---ccccchhHHHHHHHHHHhHHhhc
Confidence 8875 459999999999999999999999999999999999999999987 35679999999999999999753
No 3
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=92.47 E-value=0.3 Score=45.18 Aligned_cols=93 Identities=11% Similarity=0.059 Sum_probs=55.4
Q ss_pred CCCeeEeeeecCCceeecC-C-----CC-CCc-c-CCcccccceeEEEEEecc---------------------cCcEEE
Q psy7721 59 ANPLVLSVLSADSSAYSYN-P-----DK-PIK-E-YPHAVGKNTVLVAALQAR---------------------NNARVV 108 (160)
Q Consensus 59 ~npL~~pIL~A~~TsyS~~-~-----~~-~~~-~-~~~~~G~q~~LVsa~Qar---------------------NNARv~ 108 (160)
++--..|+|+.++.|..-. | ++ +.. + .....| ...|.+++... .++||+
T Consensus 371 ~~~~~tpLL~TS~~s~~~~~~~~i~~~~~~~~~dp~~~~~g-~~~la~~l~g~~~s~f~~~~~~~~~~~~~~~~~~~rvv 449 (552)
T TIGR03521 371 NGIKKTPLLQTSPYSKIEGTPAQISLSEVTEEPDPESYNLG-NLPLAVLLEGSFTSAYKNRILPFEIPFKRDQGKPTKMI 449 (552)
T ss_pred CCeEEEEeEEeChhhhccCCCccccHHHhhcCCChhHcCCC-CeEEEEEEEeccccccCCCCCccccccccccCCCceEE
Confidence 3555789999888876311 1 00 000 0 111224 66677776532 578999
Q ss_pred EEeccccccccccccccccccCC--ccccCcchHHHHHHHhccccc
Q psy7721 109 FSGSLYFFSNEAFNSPVQKAIGG--KKFDKSSNEALCTSSLTKHST 152 (160)
Q Consensus 109 ~~GS~d~fSd~~f~~~v~~~~~~--~~~~~sgN~~F~~~L~~Wt~~ 152 (160)
++|+.||++|.|+...-..+-|- ......+|.+|+-+...|-..
T Consensus 450 vvgd~d~l~d~~~~~~~~~~~g~~~~~~~~~~N~df~lN~vd~L~~ 495 (552)
T TIGR03521 450 VVADGDVIRNQLDNNGKPLELGYDRFTGNLYGNKEFLLNAVNYLLD 495 (552)
T ss_pred EEechHHhhhhHhhcCCccccccchhccccCccHHHHHHHHHHhcC
Confidence 99999999999883210000000 011246899999999999654
No 4
>KOG3861|consensus
Probab=90.83 E-value=0.35 Score=42.82 Aligned_cols=76 Identities=21% Similarity=0.351 Sum_probs=51.1
Q ss_pred CeeE-eeeeeeeCCCCCeeEeeeecCCceeecCCCCCCccCCcccccceeEEEEEeccc-CcEEEEEecccccccccccc
Q psy7721 46 PLLY-QGTGLIVDPANPLVLSVLSADSSAYSYNPDKPIKEYPHAVGKNTVLVAALQARN-NARVVFSGSLYFFSNEAFNS 123 (160)
Q Consensus 46 pvlf-~Gvg~~l~~~npL~~pIL~A~~TsyS~~~~~~~~~~~~~~G~q~~LVsa~QarN-NARv~~~GS~d~fSd~~f~~ 123 (160)
.+-| ---|++|+ -+.-+.-+|+..+++|-.+- =|++=+-..| ..|+..+||..||+|+|.+.
T Consensus 162 al~F~YPyGaTL~-V~~panvvLstGsv~fP~nR---------------P~~af~~~kN~gGki~vvGS~~mfhD~Yldk 225 (438)
T KOG3861|consen 162 ALHFQYPYGATLN-VSEPANVVLSTGSVVFPFNR---------------PLVAFFTNKNKGGKILVVGSGYMFHDKYLDK 225 (438)
T ss_pred eEEEecccCceee-ccccceeEeccCceeccCCC---------------cceeeeeccCcCceEEEeeeeeeechhhccc
Confidence 3444 34566666 36667778888888887652 1233333332 58999999999999999986
Q ss_pred ccccccCCccccCcchHHHHHHHhccc
Q psy7721 124 PVQKAIGGKKFDKSSNEALCTSSLTKH 150 (160)
Q Consensus 124 ~v~~~~~~~~~~~sgN~~F~~~L~~Wt 150 (160)
+ .|.+...-+.+|-
T Consensus 226 e-------------eN~kifd~~v~~L 239 (438)
T KOG3861|consen 226 E-------------ENDKIFDYLVKLL 239 (438)
T ss_pred c-------------ccchHHHHHHHHh
Confidence 3 3666666676774
No 5
>PF10632 He_PIG_assoc: He_PIG associated, NEW1 domain of bacterial glycohydrolase; InterPro: IPR019599 This domain has been named NEW1 but its actual function is not known. It is found on proteins which are bacterial galactosidases []. The domain is associated with IPR008009 from INTERPRO, a putative Ig-containing domain.
Probab=45.85 E-value=20 Score=20.72 Aligned_cols=18 Identities=33% Similarity=0.851 Sum_probs=14.2
Q ss_pred cCCceeecCCCCCCeeEe
Q psy7721 33 VDSEVIVGKKPSSPLLYQ 50 (160)
Q Consensus 33 i~~~~I~~~~~~~pvlf~ 50 (160)
|+++.|+|.....|+||.
T Consensus 3 IN~~~v~G~rPg~pfl~~ 20 (29)
T PF10632_consen 3 INSPRVFGARPGSPFLFT 20 (29)
T ss_pred cccCcEEcccCCCcEEEE
Confidence 577888888777888884
No 6
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=24.84 E-value=36 Score=19.19 Aligned_cols=11 Identities=36% Similarity=0.600 Sum_probs=6.4
Q ss_pred EEEEEeccccc
Q psy7721 106 RVVFSGSLYFF 116 (160)
Q Consensus 106 Rv~~~GS~d~f 116 (160)
|++|+||++|.
T Consensus 15 ~~a~vGg~nl~ 25 (28)
T PF00614_consen 15 RVAFVGGANLC 25 (28)
T ss_dssp TEEEEE---SS
T ss_pred CEEEECceecC
Confidence 58899998875
No 7
>COG2947 Uncharacterized conserved protein [Function unknown]
Probab=16.33 E-value=14 Score=29.16 Aligned_cols=46 Identities=30% Similarity=0.364 Sum_probs=31.8
Q ss_pred eeecCCceeecCCCCCCccCCcccccceeEEEEEecccCcEEEEEecccccc
Q psy7721 66 VLSADSSAYSYNPDKPIKEYPHAVGKNTVLVAALQARNNARVVFSGSLYFFS 117 (160)
Q Consensus 66 IL~A~~TsyS~~~~~~~~~~~~~~G~q~~LVsa~QarNNARv~~~GS~d~fS 117 (160)
++++.+..||+.--+.+.+++|.- |=-+||||+-|-+=.|-.-||=
T Consensus 6 LmKSEP~~~s~~~l~~~g~~~W~G------VRNYqARNfmR~M~iGD~~fFY 51 (156)
T COG2947 6 LMKSEPDVFSIEMLKAVGEEPWDG------VRNYQARNFMRDMKIGDLGFFY 51 (156)
T ss_pred eeecCcccccHHHHHHhCcCcccc------hHHHHHHHHHHhcccCceEEEE
Confidence 466777778876433334455542 3457999999999999888873
No 8
>COG4250 Predicted sensor protein/domain [Signal transduction mechanisms]
Probab=14.61 E-value=1.5e+02 Score=24.79 Aligned_cols=44 Identities=16% Similarity=0.151 Sum_probs=30.5
Q ss_pred eEeeeecCCceeecCCCCCC------ccCCcccccceeEEEEEecccCcE
Q psy7721 63 VLSVLSADSSAYSYNPDKPI------KEYPHAVGKNTVLVAALQARNNAR 106 (160)
Q Consensus 63 ~~pIL~A~~TsyS~~~~~~~------~~~~~~~G~q~~LVsa~QarNNAR 106 (160)
-+|||.||.|.|...+..++ -++.-+.....-||.++|-.-|-|
T Consensus 79 qi~vlsap~t~Fa~~~~sqm~~~~va~ep~d~~AqewhLiv~~~rya~~~ 128 (226)
T COG4250 79 QIYVLSAPETTFASYDRSQMTYESVAFEPRDWLAQEWHLIVGFDRYANCL 128 (226)
T ss_pred cceeecCCccccccCCcccCceeeeecCccchhhccceEEEechhHHHHH
Confidence 46899999999987655444 133334456788999998766543
No 9
>PF01747 ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002650 This entry consists of sulphate adenylyltransferase or ATP-sulfurylase (2.7.7.4 from EC) some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate []. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate [].; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation; PDB: 3CR8_B 1M8P_C 1I2D_B 1JHD_A 1V47_B 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2GKS_B ....
Probab=14.09 E-value=96 Score=25.56 Aligned_cols=9 Identities=56% Similarity=0.648 Sum_probs=7.4
Q ss_pred EEEEEeccc
Q psy7721 95 LVAALQARN 103 (160)
Q Consensus 95 LVsa~QarN 103 (160)
=|+|||+||
T Consensus 22 ~Vvafqtrn 30 (215)
T PF01747_consen 22 RVVAFQTRN 30 (215)
T ss_dssp SEEEEEESS
T ss_pred eEEEEEeCC
Confidence 478999988
No 10
>COG3225 GldG ABC-type uncharacterized transport system involved in gliding motility, auxiliary component [Cell motility and secretion]
Probab=12.61 E-value=1.4e+02 Score=28.23 Aligned_cols=42 Identities=17% Similarity=0.090 Sum_probs=30.4
Q ss_pred ccCcEEEEEeccccccccccccccccccCCccccCcchHHHHHHHhcccc
Q psy7721 102 RNNARVVFSGSLYFFSNEAFNSPVQKAIGGKKFDKSSNEALCTSSLTKHS 151 (160)
Q Consensus 102 rNNARv~~~GS~d~fSd~~f~~~v~~~~~~~~~~~sgN~~F~~~L~~Wt~ 151 (160)
|-|.-+..+++.+|+||.-...+= -.-.||.+|+.++..|-.
T Consensus 431 ~~ns~~~lv~ds~~~s~~~~~q~~--------~v~~~N~~fv~N~~d~l~ 472 (538)
T COG3225 431 RENSPAILVADSDLLSAYMANQSQ--------QVVAGNFEFVTNIFDYLS 472 (538)
T ss_pred ccCCceeecCcccccchhhhhcCC--------ceeeccHHHHHHHHHHHh
Confidence 456778999999999997665421 113679999999776644
Done!