RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy7721
         (160 letters)



>gnl|CDD|217504 pfam03345, DDOST_48kD, Oligosaccharyltransferase 48 kDa subunit
           beta.  Members of this family are involved in
           asparagine-linked protein glycosylation. In particular,
           dolichyl-diphosphooligosaccharide-protein
           glycosyltransferase (DDOST), also known as
           oligosaccharyltransferase EC:2.4.1.119, transfers the
           high-mannose sugar GlcNAc(2)-Man(9)-Glc(3) from a
           dolichol-linked donor to an asparagine acceptor in a
           consensus Asn-X-Ser/Thr motif. In most eukaryotes, the
           DDOST complex is composed of three subunits, which in
           humans are described as a 48kD subunit, ribophorin I,
           and ribophorin II. However, the yeast DDOST appears to
           consist of six subunits (alpha, beta, gamma, delta,
           epsilon, zeta). The yeast beta subunit is a 45kD
           polypeptide, previously discovered as the Wbp1 protein,
           with known sequence similarity to the human 48kD subunit
           and the other orthologues. This family includes the
           48kD-like subunits from several eukaryotes; it also
           includes the yeast DDOST beta subunit Wbp1.
          Length = 421

 Score =  175 bits (447), Expect = 3e-54
 Identities = 73/150 (48%), Positives = 96/150 (64%), Gaps = 6/150 (4%)

Query: 1   MDEEGAAVIDHLNYDV-KDAEKHTLIVADPSNLVDSEVIVGKKPSSPLLYQGTGLIVDPA 59
           +DE    V+DH NYDV   +  HT++V DP+NL+ S+  VG     P+L++G G ++   
Sbjct: 104 LDERNTVVVDHFNYDVSSASGDHTVLVLDPNNLIRSDTKVGFGGEKPILFRGVGALLGN- 162

Query: 60  NPLVLSVLSADSSAYSYNPDKPIKEYPHAVGKNTVLVAALQARNNARVVFSGSLYFFSNE 119
           NPLVL +L A S+AYSYNP +  +E P AVG    LV+ALQARNNARVVF GSL FFS+E
Sbjct: 163 NPLVLPILRAPSTAYSYNPKEKEEEVPWAVGSQGFLVSALQARNNARVVFVGSLEFFSDE 222

Query: 120 AFNSPVQKAIGGKKFDKSSNEALCTSSLTK 149
            F++ V+KA    K  K+ N       LTK
Sbjct: 223 WFSASVKKA---GKHVKTGNREFAK-ELTK 248


>gnl|CDD|225819 COG3280, TreY, Maltooligosyl trehalose synthase [Carbohydrate
           transport and metabolism].
          Length = 889

 Score = 34.0 bits (78), Expect = 0.025
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 43  PSSPLLYQGTGLI----VDPAN--PLVLSVLSADSSAYSYNPDKPIKEYPHAVGKNTVLV 96
           P  P +YQGT L     VDP N  P+  +  +    A      + ++ +   + K  V  
Sbjct: 719 PGVPDIYQGTELWDFSLVDPDNRRPVDFATRAQALKALQEGDFELLEHWLDGI-KQAVTA 777

Query: 97  AALQARNNARVVFSGSLY 114
           AAL+ R     +F+G  Y
Sbjct: 778 AALRLRREHPELFAGGDY 795


>gnl|CDD|233849 TIGR02401, trehalose_TreY, malto-oligosyltrehalose synthase.  This
           enzyme, formally named (1->4)-alpha-D-glucan
           1-alpha-D-glucosylmutase, is the TreY enzyme of the
           TreYZ pathway of trehalose biosynthesis, an alternative
           to the OtsAB pathway. Trehalose may be incorporated into
           more complex compounds but is best known as compatible
           solute. It is one of the most effective osmoprotectants,
           and unlike the various betaines does not require
           nitrogen for its synthesis [Energy metabolism,
           Biosynthesis and degradation of polysaccharides].
          Length = 825

 Score = 29.7 bits (67), Expect = 0.63
 Identities = 21/85 (24%), Positives = 29/85 (34%), Gaps = 19/85 (22%)

Query: 43  PSSPLLYQGTGL----IVDPAN---------PLVLSVLSADSSAYSYNPDKPIKEYPHAV 89
           P  P +YQGT      +VDP N            L  L+  + +      +        +
Sbjct: 658 PGVPDIYQGTEFWDLSLVDPDNRRPVDYAARRAALLQLTTPNWS------ELELWLLDGL 711

Query: 90  GKNTVLVAALQARNNARVVFSGSLY 114
            K  V  AALQ R     +F    Y
Sbjct: 712 VKLAVTAAALQLRREHPELFGQGDY 736


>gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell
           envelope biogenesis, outer membrane / Carbohydrate
           transport and metabolism].
          Length = 314

 Score = 28.8 bits (64), Expect = 1.4
 Identities = 14/46 (30%), Positives = 19/46 (41%)

Query: 67  LSADSSAYSYNPDKPIKEYPHAVGKNTVLVAALQARNNARVVFSGS 112
           L+A SS    N   P +     V     L+ A +A    R VF+ S
Sbjct: 71  LAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASS 116


>gnl|CDD|180745 PRK06915, PRK06915, acetylornithine deacetylase; Validated.
          Length = 422

 Score = 28.5 bits (64), Expect = 1.5
 Identities = 23/115 (20%), Positives = 42/115 (36%), Gaps = 22/115 (19%)

Query: 15  DVKDAEKHTLIVADPSNLVDSEVIVGKKPSSPLLYQGTG----LIVDPANPLVLSVLSAD 70
             K  + H   V+  ++  DS  IV          +G+G    +I+   N  +  V   D
Sbjct: 60  SFKKLKDHPYFVSPRTSFSDSPNIVATL-------KGSGGGKSMIL---NGHIDVVPEGD 109

Query: 71  SSAYSYNPDKPIKE----YPHAV----GKNTVLVAALQARNNARVVFSGSLYFFS 117
            + + ++P          Y        G N  L+ A++A   + +   G + F S
Sbjct: 110 VNQWDHHPYSGEVIGGRIYGRGTTDMKGGNVALLLAMEALIESGIELKGDVIFQS 164


>gnl|CDD|215746 pfam00144, Beta-lactamase, Beta-lactamase.  This family appears to
           be distantly related to pfam00905 and PF00768
           D-alanyl-D-alanine carboxypeptidase.
          Length = 326

 Score = 27.9 bits (62), Expect = 2.4
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 5/37 (13%)

Query: 37  VIVGKKPSSPLLYQGTG-----LIVDPANPLVLSVLS 68
           V+  K  + P L+  TG     L VDP   LV+ VLS
Sbjct: 269 VLADKTGAGPGLFGHTGGYGTYLAVDPDIGLVVVVLS 305


>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
           domain of the molybdenum transport system.  ModC is an
           ABC-type transporter and the ATPase component of a
           molybdate transport system that also includes the
           periplasmic binding protein ModA and the membrane
           protein ModB. ABC transporters are a large family of
           proteins involved in the transport of a wide variety of
           different compounds, like sugars, ions, peptides and
           more complex organic molecules. The nucleotide binding
           domain shows the highest similarity between all members
           of the family. ABC transporters are a subset of
           nucleotide hydrolases that contain a signature motif,
           Q-loop, and H-loop/switch region, in addition to, the
           Walker A motif/P-loop and Walker B motif commonly found
           in a number of ATP- and GTP-binding and hydrolyzing
           proteins.
          Length = 214

 Score = 26.9 bits (60), Expect = 4.4
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%)

Query: 90  GKNTVL--VAALQARNNARVVFSGSLYFFSNEAFNSPVQK-AIG 130
           GK+T+L  +A L+  +   +V +G++ F S +  N P Q+  IG
Sbjct: 35  GKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIG 78


>gnl|CDD|182326 PRK10240, PRK10240, undecaprenyl pyrophosphate synthase;
           Provisional.
          Length = 229

 Score = 26.9 bits (59), Expect = 4.5
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 82  IKEYPHAVGKNTVLVAALQARNNARVVFSGSLYFFSNEAFNSPVQK 127
           I+ + H  G  +V  A   A NN   + + +LY FS+E +N P Q+
Sbjct: 14  IRAFGHKAGAKSVRRAVSFAANNG--IEALTLYAFSSENWNRPAQE 57


>gnl|CDD|239498 cd03404, Band_7_HflK, Band_7_HflK: The band 7 domain of flotillin
           (reggie) like proteins. This group includes proteins
           similar to prokaryotic HlfK (High frequency of
           lysogenization K). Although many members of the band 7
           family are lipid raft associated, prokaryote plasma
           membranes lack cholesterol and are unlikely to have
           lipid raft domains.  Individual proteins of this band 7
           domain family may cluster to form membrane microdomains
           which may in turn recruit multiprotein complexes.
           Escherichia coli HflK is an integral membrane protein
           which may localize to the plasma membrane. HflK
           associates with another band 7 family member (HflC) to
           form an HflKC complex.  HflKC interacts with FtsH in a
           large complex termed the FtsH holo-enzyme. FtsH is an
           AAA ATP-dependent protease which exerts progressive
           proteolysis against membrane-embedded and soluble
           substrate proteins.  HflKC can modulate the activity of
           FtsH. HflKC plays a role in the decision between
           lysogenic and lytic cycle growth during lambda phage
           infection.
          Length = 266

 Score = 26.4 bits (59), Expect = 8.0
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 6/50 (12%)

Query: 14  YDVKDAEKHTLIVADPSNLV----DSEV--IVGKKPSSPLLYQGTGLIVD 57
           Y + D   +   V DP   +    +S +  +VG+     +L +G   I  
Sbjct: 96  YRISDPYDYLFNVRDPEGTLRQAAESAMREVVGRSTLDDVLTEGREEIAQ 145


>gnl|CDD|223634 COG0560, SerB, Phosphoserine phosphatase [Amino acid transport and
           metabolism].
          Length = 212

 Score = 25.7 bits (57), Expect = 9.9
 Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 4/41 (9%)

Query: 79  DKPIKEYPHAVGKNTVLVAALQARNNARVVFSGSLYFFSNE 119
           ++ ++  P A      LVAAL+A     V+ SG   F    
Sbjct: 73  EEFLRLTPGAEE----LVAALKAAGAKVVIISGGFTFLVEP 109


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.311    0.128    0.354 

Gapped
Lambda     K      H
   0.267   0.0738    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,897,746
Number of extensions: 705920
Number of successful extensions: 438
Number of sequences better than 10.0: 1
Number of HSP's gapped: 436
Number of HSP's successfully gapped: 12
Length of query: 160
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 71
Effective length of database: 6,990,096
Effective search space: 496296816
Effective search space used: 496296816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (24.9 bits)