RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy7721
         (160 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 28.7 bits (63), Expect = 0.87
 Identities = 14/71 (19%), Positives = 21/71 (29%), Gaps = 17/71 (23%)

Query: 6   AAVIDHLNYDVKDAEKHTLIVADPSNLVDSEV------IVGKKPSS-PLLYQGTGLIVDP 58
             V D L+        H  +      L   EV       +  +P   P     T      
Sbjct: 275 KQVTDFLSAAT---TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT------ 325

Query: 59  ANPLVLSVLSA 69
            NP  LS+++ 
Sbjct: 326 -NPRRLSIIAE 335


>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein
           complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A
           {Pyrococcus horikoshii}
          Length = 493

 Score = 26.9 bits (59), Expect = 4.1
 Identities = 10/77 (12%), Positives = 18/77 (23%), Gaps = 21/77 (27%)

Query: 67  LSADSSAY---SYNPDKPIKEYPHAVGKNTVLV---------AALQARNNARVV------ 108
           +  +   Y      P     E    V    V +         AAL+ +    V       
Sbjct: 83  MKIERQGYYDFHEEPVVEPGEIERVVVD--VAIIGGGPAGIGAALELQQYLTVALIEERG 140

Query: 109 -FSGSLYFFSNEAFNSP 124
              G ++    +     
Sbjct: 141 WLGGDMWLKGIKQEGFN 157


>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex,
           ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei}
           SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A
           2gc5_A* 2gc6_A* 2gcb_A
          Length = 428

 Score = 26.0 bits (58), Expect = 6.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 95  LVAALQARNNARVVFSGSLYF 115
           L A+L    +  +V +GSLY 
Sbjct: 395 LAASLNDVPDQPIVITGSLYL 415


>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
           protei photoreceptor, signaling protein; HET: MAN NAG
           BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
           PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
           2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
           1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
           ...
          Length = 349

 Score = 25.4 bits (56), Expect = 9.3
 Identities = 11/41 (26%), Positives = 18/41 (43%)

Query: 113 LYFFSNEAFNSPVQKAIGGKKFDKSSNEALCTSSLTKHSTV 153
           +Y   N+ F + +   +   K     +EA  T S T+ S V
Sbjct: 306 IYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQV 346


>1y7m_A Hypothetical protein BSU14040; surface mutagenesis, cysteine
          proteases, cell WALL catabolism, structural genomics,
          PSI; 2.05A {Bacillus subtilis subsp} SCOP: b.160.1.1
          d.7.1.1
          Length = 164

 Score = 25.0 bits (55), Expect = 10.0
 Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 5/51 (9%)

Query: 46 PLLYQGTGLIVD-----PANPLVLSVLSADSSAYSYNPDKPIKEYPHAVGK 91
            L  G  +++         P  ++V     +      ++ +K YP AVGK
Sbjct: 35 AGLTAGQSIVIPGLPDPYTIPYHIAVSIGAKTLTLSLNNRVMKTYPIAVGK 85


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.311    0.128    0.354 

Gapped
Lambda     K      H
   0.267   0.0630    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,301,380
Number of extensions: 128866
Number of successful extensions: 196
Number of sequences better than 10.0: 1
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 6
Length of query: 160
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 74
Effective length of database: 4,300,587
Effective search space: 318243438
Effective search space used: 318243438
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.4 bits)