BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy7726
         (96 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1W07|A Chain A, Arabidopsis Thaliana Acyl-Coa Oxidase 1
 pdb|1W07|B Chain B, Arabidopsis Thaliana Acyl-Coa Oxidase 1
          Length = 659

 Score = 58.2 bits (139), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/98 (35%), Positives = 52/98 (53%), Gaps = 8/98 (8%)

Query: 1   MMFSHYWVPRCSLLARFSSVSPQGDYSSLIPD--PGLRFASSLIPLFLGRWCVLGCTWGN 58
           +MF H  +PR  +L R S V+ +G+Y   +P   P      +++ +   R  ++      
Sbjct: 242 LMFDHVRIPRDQMLMRLSKVTREGEY---VPSDVPKQLVYGTMVYV---RQTIVADASNA 295

Query: 59  LLKATLIAVRYSTVRKQFGEDREGRETSVIEYQTQIPR 96
           L +A  IA RYS VR+QFG    G ET VI+Y+TQ  R
Sbjct: 296 LSRAVCIATRYSAVRRQFGAHNGGIETQVIDYKTQQNR 333


>pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
           From Lycopersicon Esculentum (Tomato)
 pdb|2FON|B Chain B, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
           From Lycopersicon Esculentum (Tomato)
 pdb|2FON|C Chain C, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
           From Lycopersicon Esculentum (Tomato)
          Length = 683

 Score = 54.7 bits (130), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/97 (36%), Positives = 49/97 (50%), Gaps = 6/97 (6%)

Query: 1   MMFSHYWVPRCSLLARFSSVSPQGDY-SSLIPDPGLRFASSLIPLFLGRWCVLGCTWGNL 59
           + F H  +PR  +L R S V+ +G Y  S IP   L      +     R  ++      +
Sbjct: 261 LSFDHVRIPRDQMLMRVSQVTKEGKYVQSDIPRQLLYGTMVYV-----RQSIVADASLAM 315

Query: 60  LKATLIAVRYSTVRKQFGEDREGRETSVIEYQTQIPR 96
            +A  IA RYS VR+QFG    G+ET VI+Y+TQ  R
Sbjct: 316 SRAVCIATRYSAVRRQFGSQNGGQETQVIDYKTQQNR 352


>pdb|1IS2|A Chain A, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
           Rat Liver
 pdb|1IS2|B Chain B, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
           Rat Liver
 pdb|2DDH|A Chain A, Crystal Structure Of Acyl-Coa Oxidase Complexed With
           3-Oh-Dodecanoate
          Length = 661

 Score = 43.9 bits (102), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 5/93 (5%)

Query: 1   MMFSHYWVPRCSLLARFSSVSPQGDYSSLIPDPGLRFASSLIPLFLGRWCVLGCTWGNLL 60
           +   +Y +PR ++L +++ V P G Y   + +  L + +    +   R  ++G    +L 
Sbjct: 240 LKMDNYRIPRENMLMKYAQVKPDGTYVKPLSNK-LTYGT----MVFVRSFLVGNAAQSLS 294

Query: 61  KATLIAVRYSTVRKQFGEDREGRETSVIEYQTQ 93
           KA  IA+RYS VR+Q    +   E  ++++QTQ
Sbjct: 295 KACTIAIRYSAVRRQSEIKQSEPEPQILDFQTQ 327


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.139    0.452 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,723,648
Number of Sequences: 62578
Number of extensions: 88676
Number of successful extensions: 188
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 181
Number of HSP's gapped (non-prelim): 3
length of query: 96
length of database: 14,973,337
effective HSP length: 62
effective length of query: 34
effective length of database: 11,093,501
effective search space: 377179034
effective search space used: 377179034
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)