Query psy7726
Match_columns 96
No_of_seqs 172 out of 1092
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 17:14:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7726.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7726hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0135|consensus 100.0 1.4E-29 3.1E-34 190.8 3.9 96 1-96 264-359 (661)
2 PLN02312 acyl-CoA oxidase 99.9 1.1E-26 2.5E-31 181.1 6.8 96 1-96 292-387 (680)
3 PLN02636 acyl-coenzyme A oxida 99.9 8.6E-26 1.9E-30 176.3 6.7 95 1-96 287-381 (686)
4 cd01150 AXO Peroxisomal acyl-C 99.9 3.7E-25 7.9E-30 171.0 6.8 96 1-96 242-337 (610)
5 PTZ00460 acyl-CoA dehydrogenas 99.9 2.2E-22 4.7E-27 156.5 6.6 89 1-96 235-324 (646)
6 KOG0139|consensus 99.8 1.2E-21 2.7E-26 141.7 1.5 73 1-96 243-315 (398)
7 PLN02443 acyl-coenzyme A oxida 99.8 1.8E-20 3.8E-25 146.2 6.4 92 1-96 242-333 (664)
8 KOG0140|consensus 99.8 4.7E-21 1E-25 137.5 1.5 73 1-96 237-309 (408)
9 KOG0136|consensus 99.8 5.8E-20 1.3E-24 140.9 2.2 91 1-96 251-341 (670)
10 TIGR03203 pimD_small pimeloyl- 99.7 1.1E-17 2.3E-22 123.0 4.8 73 1-96 209-281 (378)
11 KOG0141|consensus 99.7 3.4E-18 7.3E-23 123.1 -1.0 73 1-96 252-324 (421)
12 PRK09463 fadE acyl-CoA dehydro 99.6 2.8E-16 6.1E-21 124.4 5.4 76 1-96 299-375 (777)
13 PRK13026 acyl-CoA dehydrogenas 99.6 3.5E-16 7.6E-21 123.7 5.6 76 1-96 298-374 (774)
14 COG1960 CaiA Acyl-CoA dehydrog 99.6 4.4E-15 9.6E-20 108.8 5.1 73 1-96 221-293 (393)
15 TIGR03207 cyc_hxne_CoA_dh cycl 99.6 5.2E-15 1.1E-19 108.0 5.2 73 1-96 207-279 (372)
16 cd01157 MCAD Medium chain acyl 99.5 1.5E-14 3.3E-19 105.5 5.2 73 1-96 210-282 (378)
17 PRK03354 crotonobetainyl-CoA d 99.5 1.7E-14 3.6E-19 105.8 5.4 73 1-96 210-282 (380)
18 TIGR03204 pimC_large pimeloyl- 99.5 1.7E-14 3.7E-19 106.5 5.2 71 1-96 213-283 (395)
19 cd01162 IBD Isobutyryl-CoA deh 99.5 2E-14 4.3E-19 105.0 5.4 73 1-96 206-278 (375)
20 PRK12341 putative acyl-CoA deh 99.5 2E-14 4.3E-19 105.3 5.3 73 1-96 211-283 (381)
21 cd01155 ACAD_FadE2 Acyl-CoA de 99.5 2.1E-14 4.6E-19 105.7 5.1 73 1-96 225-297 (394)
22 cd01160 LCAD Long chain acyl-C 99.5 3E-14 6.5E-19 103.7 5.5 73 1-96 206-278 (372)
23 cd01161 VLCAD Very long chain 99.5 3.2E-14 7E-19 105.2 5.1 73 1-96 237-309 (409)
24 PLN02876 acyl-CoA dehydrogenas 99.5 3.3E-14 7.2E-19 113.2 5.4 73 1-96 649-721 (822)
25 PTZ00461 isovaleryl-CoA dehydr 99.5 3E-14 6.6E-19 105.5 4.9 73 1-96 240-312 (410)
26 cd01156 IVD Isovaleryl-CoA deh 99.5 5.1E-14 1.1E-18 102.6 5.6 73 1-96 209-281 (376)
27 cd01151 GCD Glutaryl-CoA dehyd 99.4 9.1E-14 2E-18 102.0 5.0 72 1-96 216-287 (386)
28 PLN02519 isovaleryl-CoA dehydr 99.4 1.1E-13 2.4E-18 102.3 5.1 73 1-96 235-307 (404)
29 PLN02526 acyl-coenzyme A oxida 99.4 2.1E-13 4.6E-18 101.2 4.8 72 1-96 232-303 (412)
30 cd01158 SCAD_SBCAD Short chain 99.4 4.7E-13 1E-17 97.2 5.4 73 1-96 206-278 (373)
31 KOG0138|consensus 99.4 8.4E-14 1.8E-18 100.4 1.3 72 1-96 260-331 (432)
32 cd00567 ACAD Acyl-CoA dehydrog 99.4 1E-12 2.2E-17 93.7 5.4 73 1-96 163-235 (327)
33 KOG0137|consensus 99.4 2.5E-13 5.3E-18 103.9 2.2 72 1-95 291-362 (634)
34 PRK11561 isovaleryl CoA dehydr 99.3 1.8E-12 3.9E-17 99.6 4.6 70 1-96 271-340 (538)
35 cd01153 ACAD_fadE5 Putative ac 99.3 7.3E-12 1.6E-16 92.7 5.3 76 1-95 221-297 (407)
36 cd01154 AidB Proteins involved 99.2 1.3E-11 2.7E-16 92.0 5.2 70 1-96 246-315 (418)
37 cd01159 NcnH Naphthocyclinone 99.1 5.1E-11 1.1E-15 87.0 3.2 79 1-96 182-266 (370)
38 cd01163 DszC Dibenzothiophene 99.1 7.5E-11 1.6E-15 86.2 3.1 76 1-96 191-267 (377)
39 PTZ00456 acyl-CoA dehydrogenas 99.0 2.9E-10 6.3E-15 88.8 5.0 62 35-96 305-371 (622)
40 cd01152 ACAD_fadE6_17_26 Putat 99.0 1.2E-10 2.7E-15 85.3 2.8 69 1-96 209-277 (380)
41 PF00441 Acyl-CoA_dh_1: Acyl-C 98.9 1.3E-09 2.8E-14 69.8 4.7 54 35-95 2-55 (150)
42 KOG1469|consensus 98.9 4.5E-10 9.7E-15 80.4 2.4 70 1-93 213-282 (392)
43 PTZ00457 acyl-CoA dehydrogenas 98.6 5.9E-08 1.3E-12 74.7 5.7 53 1-71 221-273 (520)
44 TIGR02309 HpaB-1 4-hydroxyphen 98.5 8.2E-08 1.8E-12 73.2 3.4 70 1-96 255-326 (477)
45 PF08028 Acyl-CoA_dh_2: Acyl-C 95.7 0.014 3E-07 36.9 3.2 41 49-94 1-41 (134)
46 COG0623 FabI Enoyl-[acyl-carri 50.3 39 0.00085 24.3 4.3 40 33-72 108-174 (259)
47 TIGR02310 HpaB-2 4-hydroxyphen 45.4 6.2 0.00013 31.0 -0.3 15 1-15 266-280 (519)
48 PF08292 RNA_pol_Rbc25: RNA po 40.6 11 0.00024 23.9 0.4 13 2-14 25-37 (122)
49 COG2368 Aromatic ring hydroxyl 22.1 27 0.00058 27.4 -0.2 15 1-15 262-276 (493)
No 1
>KOG0135|consensus
Probab=99.95 E-value=1.4e-29 Score=190.84 Aligned_cols=96 Identities=41% Similarity=0.658 Sum_probs=93.9
Q ss_pred CcccceeeCcccccCccCCCCCCCccccCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q psy7726 1 MMFSHYWVPRCSLLARFSSVSPQGDYSSLIPDPGLRFASSLIPLFLGRWCVLGCTWGNLLKATLIAVRYSTVRKQFGEDR 80 (96)
Q Consensus 1 l~F~~vrVP~~~lLg~~~~v~~~G~~~~~~~~~~~~f~~~~~~l~~~R~~~aa~a~g~~~~a~~~a~~ya~~R~qfg~~~ 80 (96)
++|+|||||+||||++.++|++||+|.+++++++++|..+++.|..||++++..+++.+.-+++||+||+..|+|||++.
T Consensus 264 l~F~nvRIPRenLLNr~gDVtpDG~YvSs~k~~~qrfgA~L~~Ls~GRvgIa~~ai~~lkla~tIAIRYS~sRRQFGP~~ 343 (661)
T KOG0135|consen 264 LWFDNVRIPRENLLNRFGDVTPDGKYVSSFKDPSQRFGASLGSLSSGRVGIASSAIGALKLALTIAIRYSLSRRQFGPTK 343 (661)
T ss_pred EEEecccCchHHHhhhccCcCCCCeeeccCCChhhhhchhhcccccchhHHHHHHHHHHHHHHHHhhhhHHhHhhhCCCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcccchhhhhccccC
Q psy7726 81 EGRETSVIEYQTQIPR 96 (96)
Q Consensus 81 ~~~e~~i~~~q~~q~~ 96 (96)
.++|+||+|||+||+|
T Consensus 344 ~geEv~iLeYp~qQ~R 359 (661)
T KOG0135|consen 344 NGEEVPILEYPSQQYR 359 (661)
T ss_pred CCCcceeeechhHHHH
Confidence 8899999999999986
No 2
>PLN02312 acyl-CoA oxidase
Probab=99.93 E-value=1.1e-26 Score=181.09 Aligned_cols=96 Identities=33% Similarity=0.526 Sum_probs=91.5
Q ss_pred CcccceeeCcccccCccCCCCCCCccccCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q psy7726 1 MMFSHYWVPRCSLLARFSSVSPQGDYSSLIPDPGLRFASSLIPLFLGRWCVLGCTWGNLLKATLIAVRYSTVRKQFGEDR 80 (96)
Q Consensus 1 l~F~~vrVP~~~lLg~~~~v~~~G~~~~~~~~~~~~f~~~~~~l~~~R~~~aa~a~g~~~~a~~~a~~ya~~R~qfg~~~ 80 (96)
|+|||||||++||||++++|+++|+|.++++++++||..++.+|..+|+.+++.++|.+++|+++|++||.+|+|||.+.
T Consensus 292 l~FdnVrVP~~nlLg~~~~V~~~G~y~~~~~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~iAvrYa~~R~QFg~~~ 371 (680)
T PLN02312 292 IWFDNLRIPRENLLNSVADVSPDGKYVSAIKDPDQRFGAFLAPLTSGRVTIAVSAIYSSKVGLAIAIRYSLSRRAFSVTP 371 (680)
T ss_pred EEEccEEECHHHhCCccceeCCCCceecCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCCC
Confidence 57999999999999999999999999999988999999999999999999999999999999999999999999999866
Q ss_pred CCcccchhhhhccccC
Q psy7726 81 EGRETSVIEYQTQIPR 96 (96)
Q Consensus 81 ~~~e~~i~~~q~~q~~ 96 (96)
+++|+||++||++|+|
T Consensus 372 ~~~E~~I~dyq~~Q~r 387 (680)
T PLN02312 372 NGPEVLLLDYPSHQRR 387 (680)
T ss_pred CCccchHhhhHHHHHH
Confidence 6789999999999985
No 3
>PLN02636 acyl-coenzyme A oxidase
Probab=99.92 E-value=8.6e-26 Score=176.35 Aligned_cols=95 Identities=38% Similarity=0.574 Sum_probs=90.4
Q ss_pred CcccceeeCcccccCccCCCCCCCccccCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q psy7726 1 MMFSHYWVPRCSLLARFSSVSPQGDYSSLIPDPGLRFASSLIPLFLGRWCVLGCTWGNLLKATLIAVRYSTVRKQFGEDR 80 (96)
Q Consensus 1 l~F~~vrVP~~~lLg~~~~v~~~G~~~~~~~~~~~~f~~~~~~l~~~R~~~aa~a~g~~~~a~~~a~~ya~~R~qfg~~~ 80 (96)
|.|||||||++||||++++|+++|+|.++++++++||..++.+|..+|+.+++.++|++++|+++|++|+.+|+|||++.
T Consensus 287 l~FdnVrVP~~nlLg~~g~v~~~G~y~~~~~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~iAvrYa~~R~qFg~p~ 366 (686)
T PLN02636 287 LRFRSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYGSVGVLKASNTIAIRYSLLRQQFGPPK 366 (686)
T ss_pred EEEeeEEECHHHhccccccccCCCcccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCEeCCCCC
Confidence 57999999999999999999999999999998899999999999999999999999999999999999999999999865
Q ss_pred CCcccchhhhhccccC
Q psy7726 81 EGRETSVIEYQTQIPR 96 (96)
Q Consensus 81 ~~~e~~i~~~q~~q~~ 96 (96)
++|+||++||++|+|
T Consensus 367 -~~e~~I~d~q~vQ~~ 381 (686)
T PLN02636 367 -QPEISILDYQSQQHK 381 (686)
T ss_pred -CCCCcccccHHHHHH
Confidence 678999999999975
No 4
>cd01150 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.
Probab=99.91 E-value=3.7e-25 Score=171.04 Aligned_cols=96 Identities=39% Similarity=0.553 Sum_probs=92.3
Q ss_pred CcccceeeCcccccCccCCCCCCCccccCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q psy7726 1 MMFSHYWVPRCSLLARFSSVSPQGDYSSLIPDPGLRFASSLIPLFLGRWCVLGCTWGNLLKATLIAVRYSTVRKQFGEDR 80 (96)
Q Consensus 1 l~F~~vrVP~~~lLg~~~~v~~~G~~~~~~~~~~~~f~~~~~~l~~~R~~~aa~a~g~~~~a~~~a~~ya~~R~qfg~~~ 80 (96)
|.|||||||++||||++++|+++|+|.+++.+++.||..++..+..+|+.+++.++|.+++|+++|++|+..|+|||++.
T Consensus 242 l~Fd~vrVP~~nlL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~~~~gRl~ia~~a~g~~~~al~iAi~Ya~~R~qfg~~~ 321 (610)
T cd01150 242 LQFRNVRIPRENLLNRFGDVSPDGTYVSPFKDPNKRYGAMLGTRSGGRVGLIYDAAMSLKKAATIAIRYSAVRRQFGPKP 321 (610)
T ss_pred EEEeeeEecHHHhcccccccCCCCceecCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHeeeecCCCC
Confidence 57999999999999999999999999999988999999999999999999999999999999999999999999999987
Q ss_pred CCcccchhhhhccccC
Q psy7726 81 EGRETSVIEYQTQIPR 96 (96)
Q Consensus 81 ~~~e~~i~~~q~~q~~ 96 (96)
+++|+||++||++|+|
T Consensus 322 ~~~e~~I~~~q~~q~r 337 (610)
T cd01150 322 SDPEVQILDYQLQQYR 337 (610)
T ss_pred CCCcchhhccHhHHHH
Confidence 7889999999999985
No 5
>PTZ00460 acyl-CoA dehydrogenase; Provisional
Probab=99.87 E-value=2.2e-22 Score=156.52 Aligned_cols=89 Identities=35% Similarity=0.453 Sum_probs=80.7
Q ss_pred CcccceeeCcccccCccCCCCCCCccccCCCChhhH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCC
Q psy7726 1 MMFSHYWVPRCSLLARFSSVSPQGDYSSLIPDPGLR-FASSLIPLFLGRWCVLGCTWGNLLKATLIAVRYSTVRKQFGED 79 (96)
Q Consensus 1 l~F~~vrVP~~~lLg~~~~v~~~G~~~~~~~~~~~~-f~~~~~~l~~~R~~~aa~a~g~~~~a~~~a~~ya~~R~qfg~~ 79 (96)
|.|||||||++||||++++|+++|+|.++ | +...+.+|..+|+.+++.++|.+++|+++|++|+.+|+|||++
T Consensus 235 l~Fd~VrVP~~nlLg~~~~v~~~G~~~~~------g~~~~~~~~l~~~R~~iaa~~~g~a~~Al~iAvrYa~~R~QFg~~ 308 (646)
T PTZ00460 235 LSFDHYRIPLDSLLARYIKVSEDGQVERQ------GNPKVSYASMMYMRNLIIDQYPRFAAQALTVAIRYSIYRQQFTND 308 (646)
T ss_pred EEeceEEECHHHhCCcccccCCCCccccC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCC
Confidence 57999999999999999999889987643 3 6678889999999999999999999999999999999999976
Q ss_pred CCCcccchhhhhccccC
Q psy7726 80 REGRETSVIEYQTQIPR 96 (96)
Q Consensus 80 ~~~~e~~i~~~q~~q~~ 96 (96)
. ++|.||++||++|+|
T Consensus 309 ~-~~E~pI~~yQ~~Q~r 324 (646)
T PTZ00460 309 N-KQENSVLEYQTQQQK 324 (646)
T ss_pred C-CCCCcHhhhHHHHHH
Confidence 5 669999999999985
No 6
>KOG0139|consensus
Probab=99.83 E-value=1.2e-21 Score=141.72 Aligned_cols=73 Identities=21% Similarity=0.328 Sum_probs=69.1
Q ss_pred CcccceeeCcccccCccCCCCCCCccccCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q psy7726 1 MMFSHYWVPRCSLLARFSSVSPQGDYSSLIPDPGLRFASSLIPLFLGRWCVLGCTWGNLLKATLIAVRYSTVRKQFGEDR 80 (96)
Q Consensus 1 l~F~~vrVP~~~lLg~~~~v~~~G~~~~~~~~~~~~f~~~~~~l~~~R~~~aa~a~g~~~~a~~~a~~ya~~R~qfg~~~ 80 (96)
|.|||||||++++||++|. ||+++|..|+.+|+.+++..+|.++.|+|.++.|+++|.|||+
T Consensus 243 l~fedVrVpks~IlGe~G~----------------GykyAm~~Ln~gRIgi~AqmlglaQ~c~d~tI~Y~q~R~~FGk-- 304 (398)
T KOG0139|consen 243 LHFEDVRVPKSSILGEYGK----------------GYKYAIEVLNAGRIGIGAQMLGLAQGCFDETIPYAQERLQFGK-- 304 (398)
T ss_pred EEeccccccchhhcccCCc----------------chHHHHHhcCccceeehhhhhhhhHhHHHhhhHHHHHHHHhcc--
Confidence 5799999999999998642 6999999999999999999999999999999999999999999
Q ss_pred CCcccchhhhhccccC
Q psy7726 81 EGRETSVIEYQTQIPR 96 (96)
Q Consensus 81 ~~~e~~i~~~q~~q~~ 96 (96)
+|++||.+||+
T Consensus 305 -----~l~d~Q~iQhq 315 (398)
T KOG0139|consen 305 -----RLLDFQGLQHQ 315 (398)
T ss_pred -----hhhhHHHHHHH
Confidence 99999999984
No 7
>PLN02443 acyl-coenzyme A oxidase
Probab=99.82 E-value=1.8e-20 Score=146.24 Aligned_cols=92 Identities=35% Similarity=0.483 Sum_probs=81.4
Q ss_pred CcccceeeCcccccCccCCCCCCCccccCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q psy7726 1 MMFSHYWVPRCSLLARFSSVSPQGDYSSLIPDPGLRFASSLIPLFLGRWCVLGCTWGNLLKATLIAVRYSTVRKQFGEDR 80 (96)
Q Consensus 1 l~F~~vrVP~~~lLg~~~~v~~~G~~~~~~~~~~~~f~~~~~~l~~~R~~~aa~a~g~~~~a~~~a~~ya~~R~qfg~~~ 80 (96)
|.|||||||++||||++++|+++|+|.++... ....+.+|..+|+.+++.++|.+++|+++|++||.+|+|||.+.
T Consensus 242 l~Fd~VrVP~~nlLg~~~~v~~~G~~~~~~~~----~~~~~~~l~~~R~~i~a~a~g~~~~Al~iAvrYa~~R~QFg~~~ 317 (664)
T PLN02443 242 LRFDHVRIPRDQMLMRLSKVTREGKYVQSDVP----RQLVYGTMVYVRQTIVADASTALSRAVCIATRYSAVRRQFGSQD 317 (664)
T ss_pred EEeCcEEECHHHcCCcccccCCCCceecccch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEeCCCCC
Confidence 57999999999999999999999998764211 23568899999999999999999999999999999999999987
Q ss_pred CCcccchhhhhccccC
Q psy7726 81 EGRETSVIEYQTQIPR 96 (96)
Q Consensus 81 ~~~e~~i~~~q~~q~~ 96 (96)
+++|.|+++||++|+|
T Consensus 318 ~~~e~qii~y~~~Q~r 333 (664)
T PLN02443 318 GGPETQVIDYKTQQSR 333 (664)
T ss_pred CccchhhhhhHHHHHH
Confidence 6679999999999975
No 8
>KOG0140|consensus
Probab=99.81 E-value=4.7e-21 Score=137.53 Aligned_cols=73 Identities=22% Similarity=0.206 Sum_probs=68.7
Q ss_pred CcccceeeCcccccCccCCCCCCCccccCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q psy7726 1 MMFSHYWVPRCSLLARFSSVSPQGDYSSLIPDPGLRFASSLIPLFLGRWCVLGCTWGNLLKATLIAVRYSTVRKQFGEDR 80 (96)
Q Consensus 1 l~F~~vrVP~~~lLg~~~~v~~~G~~~~~~~~~~~~f~~~~~~l~~~R~~~aa~a~g~~~~a~~~a~~ya~~R~qfg~~~ 80 (96)
|+|+|||||.+|+||.. | .||+++|.+|+.+|+.+|++++|.+++|++.|++|+.+|++||.
T Consensus 237 itFEDvrVP~~Nvlg~~------G----------~GFkvAm~~fd~tRp~vAa~alG~A~r~ld~a~ky~~eRK~FG~-- 298 (408)
T KOG0140|consen 237 ITFEDVRVPKENVLGAP------G----------AGFKVAMGGFDKTRPNVAAGALGLAQRCLDEATKYALERKAFGT-- 298 (408)
T ss_pred eeeeecccchhccccCC------C----------ccceehhhhccCCCCchhhhhhHHHHHHHHHHHHHHHHHHHhCc--
Confidence 68999999999999974 3 27999999999999999999999999999999999999999999
Q ss_pred CCcccchhhhhccccC
Q psy7726 81 EGRETSVIEYQTQIPR 96 (96)
Q Consensus 81 ~~~e~~i~~~q~~q~~ 96 (96)
||.+||.+|++
T Consensus 299 -----~iA~hQ~vqF~ 309 (408)
T KOG0140|consen 299 -----PIANHQAVQFM 309 (408)
T ss_pred -----ChhhhhhHHHH
Confidence 99999999974
No 9
>KOG0136|consensus
Probab=99.78 E-value=5.8e-20 Score=140.86 Aligned_cols=91 Identities=30% Similarity=0.346 Sum_probs=84.3
Q ss_pred CcccceeeCcccccCccCCCCCCCccccCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q psy7726 1 MMFSHYWVPRCSLLARFSSVSPQGDYSSLIPDPGLRFASSLIPLFLGRWCVLGCTWGNLLKATLIAVRYSTVRKQFGEDR 80 (96)
Q Consensus 1 l~F~~vrVP~~~lLg~~~~v~~~G~~~~~~~~~~~~f~~~~~~l~~~R~~~aa~a~g~~~~a~~~a~~ya~~R~qfg~~~ 80 (96)
|-|||||||++|||.++.+|.+||+|.++..+. ..+.+|.+.|..++..+.-++..|++||+|||..|+|+....
T Consensus 251 L~f~nvRIPR~nmLmr~~kV~~dGtyv~p~~~~-----l~Y~tMv~vRs~mv~d~a~~La~A~tIAtRYSaVRRQ~~i~p 325 (670)
T KOG0136|consen 251 LGFDNVRIPRTNMLMRHAKVEPDGTYVKPPHPK-----LGYGTMVYVRSLMVMDQARFLAKAATIATRYSAVRRQSEIRP 325 (670)
T ss_pred eeecceeechHhhhhhhheecCCCccccCCccc-----cceeeeEEEeehhHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 469999999999999999999999998875543 678899999999999999999999999999999999999988
Q ss_pred CCcccchhhhhccccC
Q psy7726 81 EGRETSVIEYQTQIPR 96 (96)
Q Consensus 81 ~~~e~~i~~~q~~q~~ 96 (96)
+++|++|+|||+||+|
T Consensus 326 g~~E~qIlDyqTQQ~r 341 (670)
T KOG0136|consen 326 GQPEVQILDYQTQQYR 341 (670)
T ss_pred CCCCceeeechhHHHH
Confidence 9999999999999986
No 10
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=99.70 E-value=1.1e-17 Score=122.98 Aligned_cols=73 Identities=18% Similarity=0.104 Sum_probs=67.5
Q ss_pred CcccceeeCcccccCccCCCCCCCccccCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q psy7726 1 MMFSHYWVPRCSLLARFSSVSPQGDYSSLIPDPGLRFASSLIPLFLGRWCVLGCTWGNLLKATLIAVRYSTVRKQFGEDR 80 (96)
Q Consensus 1 l~F~~vrVP~~~lLg~~~~v~~~G~~~~~~~~~~~~f~~~~~~l~~~R~~~aa~a~g~~~~a~~~a~~ya~~R~qfg~~~ 80 (96)
|+||||+||.+++||..+ +||..++..+..+|+.+++.++|++++|++.|++|+++|+|||+
T Consensus 209 l~fd~v~vp~~~~lg~~~----------------~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qFG~-- 270 (378)
T TIGR03203 209 ITFTGVVVGADAAIGDPE----------------NALPLIERVVDDARAALCAEAVGLMDESLKTTVEYIKTRKQFGV-- 270 (378)
T ss_pred EEECCCcccHHhhcCCcc----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecCc--
Confidence 579999999999998632 26888899999999999999999999999999999999999999
Q ss_pred CCcccchhhhhccccC
Q psy7726 81 EGRETSVIEYQTQIPR 96 (96)
Q Consensus 81 ~~~e~~i~~~q~~q~~ 96 (96)
||.+||.+||+
T Consensus 271 -----pi~~~Q~vq~~ 281 (378)
T TIGR03203 271 -----PIGSFQVLQHR 281 (378)
T ss_pred -----cchhhHHHHHH
Confidence 99999999985
No 11
>KOG0141|consensus
Probab=99.67 E-value=3.4e-18 Score=123.09 Aligned_cols=73 Identities=21% Similarity=0.248 Sum_probs=67.5
Q ss_pred CcccceeeCcccccCccCCCCCCCccccCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q psy7726 1 MMFSHYWVPRCSLLARFSSVSPQGDYSSLIPDPGLRFASSLIPLFLGRWCVLGCTWGNLLKATLIAVRYSTVRKQFGEDR 80 (96)
Q Consensus 1 l~F~~vrVP~~~lLg~~~~v~~~G~~~~~~~~~~~~f~~~~~~l~~~R~~~aa~a~g~~~~a~~~a~~ya~~R~qfg~~~ 80 (96)
+.|+||+||++|+||+++. ||..+|+.|+.+|+.+|+..+|++++++|++..|+.+|++||+
T Consensus 252 LvFed~~vpas~ilg~enk----------------GvYvlMsgLd~ERLvla~gplglmqa~~d~~~~Y~~qR~afgk-- 313 (421)
T KOG0141|consen 252 LVFEDCKVPASNILGEENK----------------GVYVLMSGLDLERLVLAAGPLGLMQAALDETFPYAHQRKAFGK-- 313 (421)
T ss_pred eehhhccCcHHHhcCcCCc----------------eEEEEecCCChhHhhhccCchHHHHHHHHHhhhHHHHHHHhCC--
Confidence 5799999999999998542 4668899999999999999999999999999999999999999
Q ss_pred CCcccchhhhhccccC
Q psy7726 81 EGRETSVIEYQTQIPR 96 (96)
Q Consensus 81 ~~~e~~i~~~q~~q~~ 96 (96)
+|..||++|++
T Consensus 314 -----~ig~fQ~~Qgk 324 (421)
T KOG0141|consen 314 -----KIGHFQLLQGK 324 (421)
T ss_pred -----chhHHHHHHhH
Confidence 99999999975
No 12
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=99.63 E-value=2.8e-16 Score=124.39 Aligned_cols=76 Identities=16% Similarity=0.168 Sum_probs=68.1
Q ss_pred CcccceeeCcccccCccCCCCCCCccccCCCChhhHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhcCCC
Q psy7726 1 MMFSHYWVPRCSLLARFSSVSPQGDYSSLIPDPGLRFASSLIPLFLGR-WCVLGCTWGNLLKATLIAVRYSTVRKQFGED 79 (96)
Q Consensus 1 l~F~~vrVP~~~lLg~~~~v~~~G~~~~~~~~~~~~f~~~~~~l~~~R-~~~aa~a~g~~~~a~~~a~~ya~~R~qfg~~ 79 (96)
++||||+||.+++||.... .++||..++..|..+| +.+++.++|+++.|++.|++|+++|+|||+
T Consensus 299 v~fddV~VP~d~lLG~~~~-------------~G~G~~~l~~~L~~gR~i~laA~avG~ar~al~~Av~YA~~R~QFG~- 364 (777)
T PRK09463 299 TRGKDVFIPLDYIIGGPKM-------------AGQGWRMLMECLSVGRGISLPSNSTGGAKLAALATGAYARIRRQFKL- 364 (777)
T ss_pred EEeeeeecCHHHhcccccc-------------cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-
Confidence 4799999999999986311 1247999999999999 999999999999999999999999999999
Q ss_pred CCCcccchhhhhccccC
Q psy7726 80 REGRETSVIEYQTQIPR 96 (96)
Q Consensus 80 ~~~~e~~i~~~q~~q~~ 96 (96)
||++||.+|++
T Consensus 365 ------pIg~fQaVQ~~ 375 (777)
T PRK09463 365 ------PIGKFEGIEEP 375 (777)
T ss_pred ------ChhhcHHHHHH
Confidence 99999999974
No 13
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Probab=99.63 E-value=3.5e-16 Score=123.71 Aligned_cols=76 Identities=17% Similarity=0.115 Sum_probs=68.2
Q ss_pred CcccceeeCcccccCccCCCCCCCccccCCCChhhHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhcCCC
Q psy7726 1 MMFSHYWVPRCSLLARFSSVSPQGDYSSLIPDPGLRFASSLIPLFLGR-WCVLGCTWGNLLKATLIAVRYSTVRKQFGED 79 (96)
Q Consensus 1 l~F~~vrVP~~~lLg~~~~v~~~G~~~~~~~~~~~~f~~~~~~l~~~R-~~~aa~a~g~~~~a~~~a~~ya~~R~qfg~~ 79 (96)
++||||+||.+|+||+.. .+++||..++..|+.+| +.+++.++|.++.|++.|++|+++|+|||+
T Consensus 298 v~fdDV~VP~d~lLG~~~-------------~~G~G~~~l~~~L~~gR~i~laA~a~G~A~~al~~Av~YA~~R~QFG~- 363 (774)
T PRK13026 298 TRGKDVFIPLDWIIGGPD-------------YAGRGWRMLVECLSAGRGISLPALGTASGHMATRTTGAYAYVRRQFGM- 363 (774)
T ss_pred EEEeeeEccHHHhcCCcc-------------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-
Confidence 479999999999998631 12348999999999999 899999999999999999999999999999
Q ss_pred CCCcccchhhhhccccC
Q psy7726 80 REGRETSVIEYQTQIPR 96 (96)
Q Consensus 80 ~~~~e~~i~~~q~~q~~ 96 (96)
||++||.+|++
T Consensus 364 ------pIg~fQ~Vq~~ 374 (774)
T PRK13026 364 ------PIGQFEGVQEA 374 (774)
T ss_pred ------CccccHHHHHH
Confidence 99999999974
No 14
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Probab=99.55 E-value=4.4e-15 Score=108.85 Aligned_cols=73 Identities=27% Similarity=0.331 Sum_probs=66.8
Q ss_pred CcccceeeCcccccCccCCCCCCCccccCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q psy7726 1 MMFSHYWVPRCSLLARFSSVSPQGDYSSLIPDPGLRFASSLIPLFLGRWCVLGCTWGNLLKATLIAVRYSTVRKQFGEDR 80 (96)
Q Consensus 1 l~F~~vrVP~~~lLg~~~~v~~~G~~~~~~~~~~~~f~~~~~~l~~~R~~~aa~a~g~~~~a~~~a~~ya~~R~qfg~~~ 80 (96)
+.|+||+||.+++||+. | .||..++..|+.+|+.+++.++|.++.|++.+++|+++|++||+
T Consensus 221 v~f~~v~vp~~~lig~~------~----------~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~~~~ya~~R~~fg~-- 282 (393)
T COG1960 221 VFFDDVRVPAENLLGEE------G----------DGFKIAMETLNVERLGIAAQALGIAEAALEEAVAYARERKQFGR-- 282 (393)
T ss_pred EEECCeeccHHHcCCcC------C----------chHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCC--
Confidence 47999999999999853 2 26889999999999999999999999999999999999999997
Q ss_pred CCcccchhhhhccccC
Q psy7726 81 EGRETSVIEYQTQIPR 96 (96)
Q Consensus 81 ~~~e~~i~~~q~~q~~ 96 (96)
||.+||.+|++
T Consensus 283 -----~i~~~~~vq~~ 293 (393)
T COG1960 283 -----PIADFQLVQFK 293 (393)
T ss_pred -----chhhcHHHHHH
Confidence 99999999864
No 15
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=99.55 E-value=5.2e-15 Score=108.02 Aligned_cols=73 Identities=18% Similarity=0.159 Sum_probs=66.2
Q ss_pred CcccceeeCcccccCccCCCCCCCccccCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q psy7726 1 MMFSHYWVPRCSLLARFSSVSPQGDYSSLIPDPGLRFASSLIPLFLGRWCVLGCTWGNLLKATLIAVRYSTVRKQFGEDR 80 (96)
Q Consensus 1 l~F~~vrVP~~~lLg~~~~v~~~G~~~~~~~~~~~~f~~~~~~l~~~R~~~aa~a~g~~~~a~~~a~~ya~~R~qfg~~~ 80 (96)
|.||||+||.+++||..+ .||...+..+...|+.+++.++|++++|++.+++|+++|+|||+
T Consensus 207 v~f~~v~Vp~~~~lg~~~----------------~g~~~~~~~l~~~r~~~a~~~~G~a~~al~~a~~~~~~R~~fg~-- 268 (372)
T TIGR03207 207 IFFENVRVPADHMLGNEG----------------QGFVQVMQGFDFSRALIGLQVLAVARAALDETWRYVAERQAFGK-- 268 (372)
T ss_pred EEECceeccHHHcCCCCC----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC--
Confidence 479999999999998632 25778888999999999999999999999999999999999999
Q ss_pred CCcccchhhhhccccC
Q psy7726 81 EGRETSVIEYQTQIPR 96 (96)
Q Consensus 81 ~~~e~~i~~~q~~q~~ 96 (96)
||.+||.+|++
T Consensus 269 -----~i~~~q~v~~~ 279 (372)
T TIGR03207 269 -----PLSAFQGVSHP 279 (372)
T ss_pred -----chhhhHhHHHH
Confidence 99999999874
No 16
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase. MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
Probab=99.52 E-value=1.5e-14 Score=105.52 Aligned_cols=73 Identities=25% Similarity=0.205 Sum_probs=65.9
Q ss_pred CcccceeeCcccccCccCCCCCCCccccCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q psy7726 1 MMFSHYWVPRCSLLARFSSVSPQGDYSSLIPDPGLRFASSLIPLFLGRWCVLGCTWGNLLKATLIAVRYSTVRKQFGEDR 80 (96)
Q Consensus 1 l~F~~vrVP~~~lLg~~~~v~~~G~~~~~~~~~~~~f~~~~~~l~~~R~~~aa~a~g~~~~a~~~a~~ya~~R~qfg~~~ 80 (96)
+.||||+||.+++|+.. | +||..++..+...|+.+++.++|.++++++.+++|+++|+|||+
T Consensus 210 ~~~~~v~Vp~~~~lg~~------~----------~g~~~~~~~~~~~r~~~aa~~lG~a~~~l~~~~~~~~~R~~fg~-- 271 (378)
T cd01157 210 ITFEDVRVPKENVLIGE------G----------AGFKIAMGAFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGK-- 271 (378)
T ss_pred EEeccEEECHHHcCCCC------C----------chHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCc--
Confidence 47999999999999863 2 25778888899999999999999999999999999999999999
Q ss_pred CCcccchhhhhccccC
Q psy7726 81 EGRETSVIEYQTQIPR 96 (96)
Q Consensus 81 ~~~e~~i~~~q~~q~~ 96 (96)
||.+||.+|++
T Consensus 272 -----~i~~~q~vq~~ 282 (378)
T cd01157 272 -----LIAEHQAVSFM 282 (378)
T ss_pred -----cHHHhHHHHHH
Confidence 99999999874
No 17
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Probab=99.52 E-value=1.7e-14 Score=105.78 Aligned_cols=73 Identities=23% Similarity=0.269 Sum_probs=65.1
Q ss_pred CcccceeeCcccccCccCCCCCCCccccCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q psy7726 1 MMFSHYWVPRCSLLARFSSVSPQGDYSSLIPDPGLRFASSLIPLFLGRWCVLGCTWGNLLKATLIAVRYSTVRKQFGEDR 80 (96)
Q Consensus 1 l~F~~vrVP~~~lLg~~~~v~~~G~~~~~~~~~~~~f~~~~~~l~~~R~~~aa~a~g~~~~a~~~a~~ya~~R~qfg~~~ 80 (96)
+.||||+||.++++|+. | +||......+..+|+.+++.++|.++++++.+++|+.+|+|||+
T Consensus 210 v~f~~v~Vp~~~~lg~~------g----------~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~-- 271 (380)
T PRK03354 210 ITFDDVELDEKDMFGRE------G----------NGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGE-- 271 (380)
T ss_pred EEEccEEecHHHcCCCC------C----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc--
Confidence 47999999999999863 2 25766777888999999999999999999999999999999999
Q ss_pred CCcccchhhhhccccC
Q psy7726 81 EGRETSVIEYQTQIPR 96 (96)
Q Consensus 81 ~~~e~~i~~~q~~q~~ 96 (96)
||.+||.+|++
T Consensus 272 -----~i~~~q~vq~~ 282 (380)
T PRK03354 272 -----AIGRFQLIQEK 282 (380)
T ss_pred -----cHHHhHHHHHH
Confidence 99999999874
No 18
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=99.51 E-value=1.7e-14 Score=106.52 Aligned_cols=71 Identities=15% Similarity=0.026 Sum_probs=63.5
Q ss_pred CcccceeeCcccccCccCCCCCCCccccCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q psy7726 1 MMFSHYWVPRCSLLARFSSVSPQGDYSSLIPDPGLRFASSLIPLFLGRWCVLGCTWGNLLKATLIAVRYSTVRKQFGEDR 80 (96)
Q Consensus 1 l~F~~vrVP~~~lLg~~~~v~~~G~~~~~~~~~~~~f~~~~~~l~~~R~~~aa~a~g~~~~a~~~a~~ya~~R~qfg~~~ 80 (96)
|.|+||+||.+++||.. | ++|..++..+...|+.+++ +|.+++|++.+++|+++|+|||+
T Consensus 213 v~f~~v~Vp~~~~lg~~------~----------~g~~~~~~~l~~~r~g~aa--~g~a~~~l~~a~~ya~~R~~fg~-- 272 (395)
T TIGR03204 213 VFFDDVEVPYENLVGEE------N----------KGWDYAKFLLGNERTGIAR--VGVSKERIRRIKDLAAKVESGGK-- 272 (395)
T ss_pred EEEcceEEcHHHcCCCC------C----------chHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCC--
Confidence 57999999999999852 2 2688888999999999886 79999999999999999999999
Q ss_pred CCcccchhhhhccccC
Q psy7726 81 EGRETSVIEYQTQIPR 96 (96)
Q Consensus 81 ~~~e~~i~~~q~~q~~ 96 (96)
||++||.+|++
T Consensus 273 -----~i~~~q~vq~~ 283 (395)
T TIGR03204 273 -----PVIEDAKFREK 283 (395)
T ss_pred -----ccccCHHHHHH
Confidence 99999999975
No 19
>cd01162 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
Probab=99.51 E-value=2e-14 Score=105.04 Aligned_cols=73 Identities=27% Similarity=0.388 Sum_probs=65.8
Q ss_pred CcccceeeCcccccCccCCCCCCCccccCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q psy7726 1 MMFSHYWVPRCSLLARFSSVSPQGDYSSLIPDPGLRFASSLIPLFLGRWCVLGCTWGNLLKATLIAVRYSTVRKQFGEDR 80 (96)
Q Consensus 1 l~F~~vrVP~~~lLg~~~~v~~~G~~~~~~~~~~~~f~~~~~~l~~~R~~~aa~a~g~~~~a~~~a~~ya~~R~qfg~~~ 80 (96)
|.||||+||.+++||.. | +||...+..+..+|+.+++.++|.++++++.+++|+++|+|||+
T Consensus 206 l~f~~v~Vp~~~~lg~~------~----------~g~~~~~~~l~~~r~~~aa~~lG~a~~al~~~~~~a~~R~~fg~-- 267 (375)
T cd01162 206 VIFEDCRVPVENRLGGE------G----------QGFGIAMAGLNGGRLNIASCSLGAAQAALDLARAYLEERKQFGK-- 267 (375)
T ss_pred EEECceEecHHHcCCCC------C----------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc--
Confidence 47999999999999863 2 25777788899999999999999999999999999999999999
Q ss_pred CCcccchhhhhccccC
Q psy7726 81 EGRETSVIEYQTQIPR 96 (96)
Q Consensus 81 ~~~e~~i~~~q~~q~~ 96 (96)
||++||.+|++
T Consensus 268 -----~l~~~~~vq~~ 278 (375)
T cd01162 268 -----PLADFQALQFK 278 (375)
T ss_pred -----cHHhhHHHHHH
Confidence 99999999864
No 20
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Probab=99.51 E-value=2e-14 Score=105.35 Aligned_cols=73 Identities=21% Similarity=0.201 Sum_probs=65.7
Q ss_pred CcccceeeCcccccCccCCCCCCCccccCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q psy7726 1 MMFSHYWVPRCSLLARFSSVSPQGDYSSLIPDPGLRFASSLIPLFLGRWCVLGCTWGNLLKATLIAVRYSTVRKQFGEDR 80 (96)
Q Consensus 1 l~F~~vrVP~~~lLg~~~~v~~~G~~~~~~~~~~~~f~~~~~~l~~~R~~~aa~a~g~~~~a~~~a~~ya~~R~qfg~~~ 80 (96)
+.||||+||.+++||.. | +||...+..+...|+.+++.++|+++.+++.+++|+++|++||+
T Consensus 211 v~~~~v~Vp~~~~lg~~------~----------~g~~~~~~~~~~~r~~~aa~~lG~a~~al~~~~~~~~~R~~~g~-- 272 (381)
T PRK12341 211 VYLDNVEVEESDLVGEE------G----------MGFLNVMYNFEMERLINAARSLGFAECAFEDAARYANQRIQFGK-- 272 (381)
T ss_pred EEECcEEecHHHcCCCC------C----------hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCc--
Confidence 47999999999999863 2 25777788899999999999999999999999999999999999
Q ss_pred CCcccchhhhhccccC
Q psy7726 81 EGRETSVIEYQTQIPR 96 (96)
Q Consensus 81 ~~~e~~i~~~q~~q~~ 96 (96)
||.+||.+|++
T Consensus 273 -----~i~~~~~v~~~ 283 (381)
T PRK12341 273 -----PIGHNQLIQEK 283 (381)
T ss_pred -----cHHHhHHHHHH
Confidence 99999999864
No 21
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=99.50 E-value=2.1e-14 Score=105.69 Aligned_cols=73 Identities=19% Similarity=0.164 Sum_probs=65.8
Q ss_pred CcccceeeCcccccCccCCCCCCCccccCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q psy7726 1 MMFSHYWVPRCSLLARFSSVSPQGDYSSLIPDPGLRFASSLIPLFLGRWCVLGCTWGNLLKATLIAVRYSTVRKQFGEDR 80 (96)
Q Consensus 1 l~F~~vrVP~~~lLg~~~~v~~~G~~~~~~~~~~~~f~~~~~~l~~~R~~~aa~a~g~~~~a~~~a~~ya~~R~qfg~~~ 80 (96)
|.||||+||.+++|+.. | +|+...+..+..+|+..++.++|+++++++.+++|+++|+|||+
T Consensus 225 v~f~dv~Vp~~~~lg~~------~----------~g~~~~~~~~~~~r~~~~a~~lG~a~~al~~~~~~~~~R~~fg~-- 286 (394)
T cd01155 225 ITFDNVRVPASNLILGE------G----------RGFEIAQGRLGPGRIHHCMRLIGAAERALELMCQRAVSREAFGK-- 286 (394)
T ss_pred EEEccEEecHHHcCCCC------C----------hHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccCCC--
Confidence 47999999999999863 2 25777888899999999999999999999999999999999999
Q ss_pred CCcccchhhhhccccC
Q psy7726 81 EGRETSVIEYQTQIPR 96 (96)
Q Consensus 81 ~~~e~~i~~~q~~q~~ 96 (96)
||.+||.+|++
T Consensus 287 -----~i~~~q~vq~~ 297 (394)
T cd01155 287 -----KLAQHGVVAHW 297 (394)
T ss_pred -----cHhhhHHHHHH
Confidence 99999999874
No 22
>cd01160 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
Probab=99.50 E-value=3e-14 Score=103.69 Aligned_cols=73 Identities=19% Similarity=0.182 Sum_probs=65.5
Q ss_pred CcccceeeCcccccCccCCCCCCCccccCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q psy7726 1 MMFSHYWVPRCSLLARFSSVSPQGDYSSLIPDPGLRFASSLIPLFLGRWCVLGCTWGNLLKATLIAVRYSTVRKQFGEDR 80 (96)
Q Consensus 1 l~F~~vrVP~~~lLg~~~~v~~~G~~~~~~~~~~~~f~~~~~~l~~~R~~~aa~a~g~~~~a~~~a~~ya~~R~qfg~~~ 80 (96)
+.|+||+||.+++||..+ .||...+..+...|+.+++.++|+++++++.+++|+++|+|||+
T Consensus 206 v~~~~v~Vp~~~~lg~~~----------------~g~~~~~~~~~~~~~~~aa~~lG~a~~al~~a~~~a~~R~~~g~-- 267 (372)
T cd01160 206 LFFDDCRVPAENLLGEEN----------------KGFYYLMQNLPQERLLIAAGALAAAEFMLEETRNYVKQRKAFGK-- 267 (372)
T ss_pred EEecceEccHHHcCCCCC----------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc--
Confidence 479999999999998632 25777788899999999999999999999999999999999998
Q ss_pred CCcccchhhhhccccC
Q psy7726 81 EGRETSVIEYQTQIPR 96 (96)
Q Consensus 81 ~~~e~~i~~~q~~q~~ 96 (96)
||.+||.+|++
T Consensus 268 -----~i~~~q~vq~~ 278 (372)
T cd01160 268 -----TLAQLQVVRHK 278 (372)
T ss_pred -----cHHhhHHHHHH
Confidence 99999999874
No 23
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase. VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
Probab=99.49 E-value=3.2e-14 Score=105.23 Aligned_cols=73 Identities=23% Similarity=0.333 Sum_probs=66.0
Q ss_pred CcccceeeCcccccCccCCCCCCCccccCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q psy7726 1 MMFSHYWVPRCSLLARFSSVSPQGDYSSLIPDPGLRFASSLIPLFLGRWCVLGCTWGNLLKATLIAVRYSTVRKQFGEDR 80 (96)
Q Consensus 1 l~F~~vrVP~~~lLg~~~~v~~~G~~~~~~~~~~~~f~~~~~~l~~~R~~~aa~a~g~~~~a~~~a~~ya~~R~qfg~~~ 80 (96)
+.||||+||++++||..+ +||...+..+..+|+.+++.++|+++++++.+++|++.|+|||+
T Consensus 237 v~~~~v~Vp~~~~lg~~g----------------~g~~~~~~~l~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~-- 298 (409)
T cd01161 237 VYFEDVKIPVENVLGEVG----------------DGFKVAMNILNNGRFGMGAALIGTMKRCIEKAVDYANNRKQFGK-- 298 (409)
T ss_pred EEeccEEECHHHcCCCCC----------------hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhceeCCc--
Confidence 479999999999998632 25777888999999999999999999999999999999999999
Q ss_pred CCcccchhhhhccccC
Q psy7726 81 EGRETSVIEYQTQIPR 96 (96)
Q Consensus 81 ~~~e~~i~~~q~~q~~ 96 (96)
||.+||.+|++
T Consensus 299 -----~l~~~q~vq~~ 309 (409)
T cd01161 299 -----KIHEFGLIQEK 309 (409)
T ss_pred -----cHHHhHHHHHH
Confidence 99999999974
No 24
>PLN02876 acyl-CoA dehydrogenase
Probab=99.49 E-value=3.3e-14 Score=113.21 Aligned_cols=73 Identities=21% Similarity=0.196 Sum_probs=66.2
Q ss_pred CcccceeeCcccccCccCCCCCCCccccCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q psy7726 1 MMFSHYWVPRCSLLARFSSVSPQGDYSSLIPDPGLRFASSLIPLFLGRWCVLGCTWGNLLKATLIAVRYSTVRKQFGEDR 80 (96)
Q Consensus 1 l~F~~vrVP~~~lLg~~~~v~~~G~~~~~~~~~~~~f~~~~~~l~~~R~~~aa~a~g~~~~a~~~a~~ya~~R~qfg~~~ 80 (96)
|.||||+||.+++||.. | +||..++..+..+|+.+++.++|++++|++.+++|+++|+|||+
T Consensus 649 v~fd~V~Vp~~~~lg~~------g----------~g~~~~~~~l~~~r~~~aa~~vG~a~~ale~a~~ya~~R~~fg~-- 710 (822)
T PLN02876 649 ISFENVRVPAKNILLGE------G----------RGFEIAQGRLGPGRLHHCMRLIGAAERGMQLMVQRALSRKAFGK-- 710 (822)
T ss_pred EEEcceeechhheecCC------C----------chHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC--
Confidence 47999999999999753 2 25778888999999999999999999999999999999999999
Q ss_pred CCcccchhhhhccccC
Q psy7726 81 EGRETSVIEYQTQIPR 96 (96)
Q Consensus 81 ~~~e~~i~~~q~~q~~ 96 (96)
||.+||.+|++
T Consensus 711 -----~i~~~q~vq~~ 721 (822)
T PLN02876 711 -----LIAQHGSFLSD 721 (822)
T ss_pred -----chhhCHHHHHH
Confidence 99999999874
No 25
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional
Probab=99.49 E-value=3e-14 Score=105.47 Aligned_cols=73 Identities=19% Similarity=0.258 Sum_probs=65.4
Q ss_pred CcccceeeCcccccCccCCCCCCCccccCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q psy7726 1 MMFSHYWVPRCSLLARFSSVSPQGDYSSLIPDPGLRFASSLIPLFLGRWCVLGCTWGNLLKATLIAVRYSTVRKQFGEDR 80 (96)
Q Consensus 1 l~F~~vrVP~~~lLg~~~~v~~~G~~~~~~~~~~~~f~~~~~~l~~~R~~~aa~a~g~~~~a~~~a~~ya~~R~qfg~~~ 80 (96)
+.|+||+||++++|+..+ +|+..++..+...|+.+++.++|+++++++++++|+++|+|||+
T Consensus 240 l~f~~v~Vp~~~~lg~~g----------------~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~-- 301 (410)
T PTZ00461 240 LFFEDVVVPAENLLGEEG----------------KGMVGMMRNLELERVTLAAMAVGIAERSVELMTSYASERKAFGK-- 301 (410)
T ss_pred EEEcceecCHHHhCCCCC----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCc--
Confidence 479999999999998732 14667778899999999999999999999999999999999999
Q ss_pred CCcccchhhhhccccC
Q psy7726 81 EGRETSVIEYQTQIPR 96 (96)
Q Consensus 81 ~~~e~~i~~~q~~q~~ 96 (96)
||.+||.+|++
T Consensus 302 -----~i~~~q~vq~~ 312 (410)
T PTZ00461 302 -----PISNFGQIQRY 312 (410)
T ss_pred -----CHHhhHHHHHH
Confidence 99999999864
No 26
>cd01156 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
Probab=99.48 E-value=5.1e-14 Score=102.63 Aligned_cols=73 Identities=25% Similarity=0.304 Sum_probs=65.6
Q ss_pred CcccceeeCcccccCccCCCCCCCccccCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q psy7726 1 MMFSHYWVPRCSLLARFSSVSPQGDYSSLIPDPGLRFASSLIPLFLGRWCVLGCTWGNLLKATLIAVRYSTVRKQFGEDR 80 (96)
Q Consensus 1 l~F~~vrVP~~~lLg~~~~v~~~G~~~~~~~~~~~~f~~~~~~l~~~R~~~aa~a~g~~~~a~~~a~~ya~~R~qfg~~~ 80 (96)
+.|+||+||++++||..+ .|+..++..+..+|+.+++.++|.++++++.+++|+++|+|||+
T Consensus 209 v~~~~v~Vp~~~~lg~~~----------------~g~~~~~~~~~~~r~~~aa~~lG~a~~al~~~~~~~~~R~~~g~-- 270 (376)
T cd01156 209 LVFEDCEVPEENILGGEN----------------KGVYVLMSGLDYERLVLAGGPIGIMQAALDVAIPYAHQRKQFGQ-- 270 (376)
T ss_pred EEeCceEecHHHcCCCCC----------------chHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCc--
Confidence 479999999999998632 25767788999999999999999999999999999999999999
Q ss_pred CCcccchhhhhccccC
Q psy7726 81 EGRETSVIEYQTQIPR 96 (96)
Q Consensus 81 ~~~e~~i~~~q~~q~~ 96 (96)
||.+||.+|++
T Consensus 271 -----~i~~~~~v~~~ 281 (376)
T cd01156 271 -----PIGEFQLVQGK 281 (376)
T ss_pred -----chHHhHHHHHH
Confidence 99999999864
No 27
>cd01151 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Probab=99.45 E-value=9.1e-14 Score=102.00 Aligned_cols=72 Identities=21% Similarity=0.277 Sum_probs=64.3
Q ss_pred CcccceeeCcccccCccCCCCCCCccccCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q psy7726 1 MMFSHYWVPRCSLLARFSSVSPQGDYSSLIPDPGLRFASSLIPLFLGRWCVLGCTWGNLLKATLIAVRYSTVRKQFGEDR 80 (96)
Q Consensus 1 l~F~~vrVP~~~lLg~~~~v~~~G~~~~~~~~~~~~f~~~~~~l~~~R~~~aa~a~g~~~~a~~~a~~ya~~R~qfg~~~ 80 (96)
+.||||+||.+++|+.. + |+...+..+...|+.+++.++|+++++++.+++|+++|+|||+
T Consensus 216 v~f~~v~Vp~~~~l~~~-----~------------g~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~~g~-- 276 (386)
T cd01151 216 IVMDNVFVPEENLLPGA-----E------------GLRGPFKCLNNARYGIAWGALGAAEDCYHTARQYVLDRKQFGR-- 276 (386)
T ss_pred EEEccEEeCHHHcCCcc-----c------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCC--
Confidence 47999999999999751 1 3666778899999999999999999999999999999999998
Q ss_pred CCcccchhhhhccccC
Q psy7726 81 EGRETSVIEYQTQIPR 96 (96)
Q Consensus 81 ~~~e~~i~~~q~~q~~ 96 (96)
||++||.+|++
T Consensus 277 -----~i~~~q~vq~~ 287 (386)
T cd01151 277 -----PLAAFQLVQKK 287 (386)
T ss_pred -----chhhhHHHHHH
Confidence 99999999874
No 28
>PLN02519 isovaleryl-CoA dehydrogenase
Probab=99.44 E-value=1.1e-13 Score=102.29 Aligned_cols=73 Identities=21% Similarity=0.291 Sum_probs=64.9
Q ss_pred CcccceeeCcccccCccCCCCCCCccccCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q psy7726 1 MMFSHYWVPRCSLLARFSSVSPQGDYSSLIPDPGLRFASSLIPLFLGRWCVLGCTWGNLLKATLIAVRYSTVRKQFGEDR 80 (96)
Q Consensus 1 l~F~~vrVP~~~lLg~~~~v~~~G~~~~~~~~~~~~f~~~~~~l~~~R~~~aa~a~g~~~~a~~~a~~ya~~R~qfg~~~ 80 (96)
+.||||+||.+++||..+ .|+...+..+...|+.+++.++|.+++|++.+++|++.|.|||+
T Consensus 235 v~f~~v~Vp~~~~lg~~~----------------~G~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~~g~-- 296 (404)
T PLN02519 235 LVFENCFVPEENVLGQEG----------------KGVYVMMSGLDLERLVLAAGPLGLMQACLDVVLPYVRQREQFGR-- 296 (404)
T ss_pred EEeCeEEecHHHcCCCCC----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeCCc--
Confidence 479999999999998632 14666778899999999999999999999999999999999999
Q ss_pred CCcccchhhhhccccC
Q psy7726 81 EGRETSVIEYQTQIPR 96 (96)
Q Consensus 81 ~~~e~~i~~~q~~q~~ 96 (96)
||.+||.+|++
T Consensus 297 -----pl~~~~~v~~~ 307 (404)
T PLN02519 297 -----PIGEFQFIQGK 307 (404)
T ss_pred -----cHHHhHHHHHH
Confidence 99999998864
No 29
>PLN02526 acyl-coenzyme A oxidase
Probab=99.41 E-value=2.1e-13 Score=101.19 Aligned_cols=72 Identities=22% Similarity=0.283 Sum_probs=63.9
Q ss_pred CcccceeeCcccccCccCCCCCCCccccCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q psy7726 1 MMFSHYWVPRCSLLARFSSVSPQGDYSSLIPDPGLRFASSLIPLFLGRWCVLGCTWGNLLKATLIAVRYSTVRKQFGEDR 80 (96)
Q Consensus 1 l~F~~vrVP~~~lLg~~~~v~~~G~~~~~~~~~~~~f~~~~~~l~~~R~~~aa~a~g~~~~a~~~a~~ya~~R~qfg~~~ 80 (96)
|.||||+||++++|+.. + +|......+...|+.+++.++|+++++++.+++|+++|+|||+
T Consensus 232 v~f~~v~Vp~~~~l~~~------~-----------~~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~-- 292 (412)
T PLN02526 232 IVLKDVFVPDEDRLPGV------N-----------SFQDTNKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGA-- 292 (412)
T ss_pred EEEeeEEECHHHhCCCc------c-----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCC--
Confidence 57999999999999742 1 3556667899999999999999999999999999999999999
Q ss_pred CCcccchhhhhccccC
Q psy7726 81 EGRETSVIEYQTQIPR 96 (96)
Q Consensus 81 ~~~e~~i~~~q~~q~~ 96 (96)
||.+||.+|++
T Consensus 293 -----~i~~~q~vq~~ 303 (412)
T PLN02526 293 -----PLAAFQINQEK 303 (412)
T ss_pred -----chhhhHHHHHH
Confidence 99999999874
No 30
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
Probab=99.39 E-value=4.7e-13 Score=97.25 Aligned_cols=73 Identities=26% Similarity=0.338 Sum_probs=65.3
Q ss_pred CcccceeeCcccccCccCCCCCCCccccCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q psy7726 1 MMFSHYWVPRCSLLARFSSVSPQGDYSSLIPDPGLRFASSLIPLFLGRWCVLGCTWGNLLKATLIAVRYSTVRKQFGEDR 80 (96)
Q Consensus 1 l~F~~vrVP~~~lLg~~~~v~~~G~~~~~~~~~~~~f~~~~~~l~~~R~~~aa~a~g~~~~a~~~a~~ya~~R~qfg~~~ 80 (96)
+.||||+||.+++|+..+ .||...+..+..+|+.+++.++|+++++++++++|+++|++||.
T Consensus 206 v~~~~v~Vp~~~~lg~~~----------------~g~~~~~~~~~~~r~~~~a~~lG~a~~~l~~~~~~~~~R~~~g~-- 267 (373)
T cd01158 206 LIFEDVRVPKENILGEEG----------------EGFKIAMQTLDGGRIGIAAQALGIAQAALDAAVDYAKERKQFGK-- 267 (373)
T ss_pred EEeCcEEecHHHcCCCCC----------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCC--
Confidence 479999999999998632 25777788899999999999999999999999999999999998
Q ss_pred CCcccchhhhhccccC
Q psy7726 81 EGRETSVIEYQTQIPR 96 (96)
Q Consensus 81 ~~~e~~i~~~q~~q~~ 96 (96)
|+.+||.+|++
T Consensus 268 -----~~~~~~~v~~~ 278 (373)
T cd01158 268 -----PIADFQGIQFK 278 (373)
T ss_pred -----cHHHhHHHHHH
Confidence 89999998863
No 31
>KOG0138|consensus
Probab=99.39 E-value=8.4e-14 Score=100.41 Aligned_cols=72 Identities=24% Similarity=0.203 Sum_probs=62.5
Q ss_pred CcccceeeCcccccCccCCCCCCCccccCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q psy7726 1 MMFSHYWVPRCSLLARFSSVSPQGDYSSLIPDPGLRFASSLIPLFLGRWCVLGCTWGNLLKATLIAVRYSTVRKQFGEDR 80 (96)
Q Consensus 1 l~F~~vrVP~~~lLg~~~~v~~~G~~~~~~~~~~~~f~~~~~~l~~~R~~~aa~a~g~~~~a~~~a~~ya~~R~qfg~~~ 80 (96)
|.+|||+||+||+|..... |.--.+.|+..|+++||.++|++..|+++|-+|...|+|||.
T Consensus 260 Ilmd~V~VPeE~~LPg~~s-----------------~qgpf~cLnnaR~giAWg~lGase~c~~~arqY~ldRkQFG~-- 320 (432)
T KOG0138|consen 260 ILMDGVEVPEENLLPGASS-----------------LQGPFGCLNNARYGIAWGALGASEFCLHTARQYTLDRKQFGR-- 320 (432)
T ss_pred eeecCCcCChhhcCCCccc-----------------cCCchhhhhhhhhheeehhchhHHHHHHHHHHHHHHHHHhCC--
Confidence 4579999999999976432 222346889999999999999999999999999999999999
Q ss_pred CCcccchhhhhccccC
Q psy7726 81 EGRETSVIEYQTQIPR 96 (96)
Q Consensus 81 ~~~e~~i~~~q~~q~~ 96 (96)
||+.+|++|.|
T Consensus 321 -----PLAanQL~Q~K 331 (432)
T KOG0138|consen 321 -----PLAANQLIQKK 331 (432)
T ss_pred -----chhHHHHHHHH
Confidence 99999999864
No 32
>cd00567 ACAD Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob
Probab=99.36 E-value=1e-12 Score=93.74 Aligned_cols=73 Identities=29% Similarity=0.373 Sum_probs=64.4
Q ss_pred CcccceeeCcccccCccCCCCCCCccccCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q psy7726 1 MMFSHYWVPRCSLLARFSSVSPQGDYSSLIPDPGLRFASSLIPLFLGRWCVLGCTWGNLLKATLIAVRYSTVRKQFGEDR 80 (96)
Q Consensus 1 l~F~~vrVP~~~lLg~~~~v~~~G~~~~~~~~~~~~f~~~~~~l~~~R~~~aa~a~g~~~~a~~~a~~ya~~R~qfg~~~ 80 (96)
+.||||+||.+++|+..+ .++......+...|+.+++.++|+++.+++.+++|++.|+|||.
T Consensus 163 v~~~~v~Vp~~~~l~~~~----------------~g~~~~~~~~~~~~~~~aa~~~G~a~~al~~~~~~~~~r~~~g~-- 224 (327)
T cd00567 163 LVFDDVRVPEDNLLGEEG----------------GGFELAMKGLNVGRLLLAAVALGAARAALDEAVEYAKQRKQFGK-- 224 (327)
T ss_pred EEECCEEecHHHcCCCCC----------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC--
Confidence 479999999999998632 13556777899999999999999999999999999999999999
Q ss_pred CCcccchhhhhccccC
Q psy7726 81 EGRETSVIEYQTQIPR 96 (96)
Q Consensus 81 ~~~e~~i~~~q~~q~~ 96 (96)
||.+||.+|++
T Consensus 225 -----~~~~~~~vq~~ 235 (327)
T cd00567 225 -----PLAEFQAVQFK 235 (327)
T ss_pred -----ccccchHHHHH
Confidence 99999999864
No 33
>KOG0137|consensus
Probab=99.36 E-value=2.5e-13 Score=103.94 Aligned_cols=72 Identities=21% Similarity=0.271 Sum_probs=67.1
Q ss_pred CcccceeeCcccccCccCCCCCCCccccCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q psy7726 1 MMFSHYWVPRCSLLARFSSVSPQGDYSSLIPDPGLRFASSLIPLFLGRWCVLGCTWGNLLKATLIAVRYSTVRKQFGEDR 80 (96)
Q Consensus 1 l~F~~vrVP~~~lLg~~~~v~~~G~~~~~~~~~~~~f~~~~~~l~~~R~~~aa~a~g~~~~a~~~a~~ya~~R~qfg~~~ 80 (96)
+.|++|+||.+|+||..| +||+.+|..++.+|+.+++.++|.|++++..+.+|+..|+|||+
T Consensus 291 v~f~~~ki~~envlG~~G----------------~G~kva~nilnsgR~~~aaa~~G~mkr~I~~~~d~~~~rtQ~g~-- 352 (634)
T KOG0137|consen 291 VHFEGVKIPIENVLGKPG----------------DGFKVAMNILNSGRFGMAAALLGLMKRIIEEAADYATNRTQFGK-- 352 (634)
T ss_pred eeeccccccHHHhcCCCC----------------cchHHHHHHHccCCcchhHHHHHHHHHHHHHHHHHhhcceecCc--
Confidence 479999999999999854 36999999999999999999999999999999999999999999
Q ss_pred CCcccchhhhhcccc
Q psy7726 81 EGRETSVIEYQTQIP 95 (96)
Q Consensus 81 ~~~e~~i~~~q~~q~ 95 (96)
+|.+|-++|.
T Consensus 353 -----~L~~~~l~q~ 362 (634)
T KOG0137|consen 353 -----KLHDFGLIQE 362 (634)
T ss_pred -----chhhhhhHHH
Confidence 8999998885
No 34
>PRK11561 isovaleryl CoA dehydrogenase; Provisional
Probab=99.31 E-value=1.8e-12 Score=99.63 Aligned_cols=70 Identities=20% Similarity=0.101 Sum_probs=60.6
Q ss_pred CcccceeeCcccccCccCCCCCCCccccCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q psy7726 1 MMFSHYWVPRCSLLARFSSVSPQGDYSSLIPDPGLRFASSLIPLFLGRWCVLGCTWGNLLKATLIAVRYSTVRKQFGEDR 80 (96)
Q Consensus 1 l~F~~vrVP~~~lLg~~~~v~~~G~~~~~~~~~~~~f~~~~~~l~~~R~~~aa~a~g~~~~a~~~a~~ya~~R~qfg~~~ 80 (96)
|.|||| .+++||+. ++||..++..++.+|+.+++.++|.+++|++.|++|+++|++||+
T Consensus 271 v~f~dv---~~~llG~~----------------g~G~~~i~~~l~~~Rl~~a~~a~G~a~~Al~~A~~yA~~R~~FG~-- 329 (538)
T PRK11561 271 VEFQDA---IGWLLGEE----------------GEGIRLILKMGGMTRFDCALGSHGLMRRAFSVAIYHAHQRQVFGK-- 329 (538)
T ss_pred EEECCH---HHHHCCCC----------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCC--
Confidence 357777 36677653 237888999999999999999999999999999999999999999
Q ss_pred CCcccchhhhhccccC
Q psy7726 81 EGRETSVIEYQTQIPR 96 (96)
Q Consensus 81 ~~~e~~i~~~q~~q~~ 96 (96)
||++||.+|++
T Consensus 330 -----~L~~~q~vq~~ 340 (538)
T PRK11561 330 -----PLIEQPLMRQV 340 (538)
T ss_pred -----ccccCHHHHHH
Confidence 99999999863
No 35
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=99.26 E-value=7.3e-12 Score=92.73 Aligned_cols=76 Identities=21% Similarity=0.124 Sum_probs=60.8
Q ss_pred CcccceeeCcccccCccCCCCCCCccccCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q psy7726 1 MMFSHYWVPRCSLLARFSSVSPQGDYSSLIPDPGLRFASSLIPLFLGRWCVLGCTWGNLLKATLIAVRYSTVRKQFGEDR 80 (96)
Q Consensus 1 l~F~~vrVP~~~lLg~~~~v~~~G~~~~~~~~~~~~f~~~~~~l~~~R~~~aa~a~g~~~~a~~~a~~ya~~R~qfg~~~ 80 (96)
+.||||+|| +||.. | .||...+..+..+|+.+++.++|+++++++.+++|+.+|+|||++.
T Consensus 221 v~f~~v~Vp---~lg~~------~----------~g~~~~~~~l~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~i 281 (407)
T cd01153 221 LVFDNAKGE---LIGEE------G----------MGLAQMFAMMNGARLGVGTQGTGLAEAAYLNALAYAKERKQGGDLI 281 (407)
T ss_pred EEEcCEEEe---eeCCC------C----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCcC
Confidence 479999999 77652 2 2577888899999999999999999999999999999999999931
Q ss_pred -CCcccchhhhhcccc
Q psy7726 81 -EGRETSVIEYQTQIP 95 (96)
Q Consensus 81 -~~~e~~i~~~q~~q~ 95 (96)
..+.+++.++|.+|+
T Consensus 282 ~~~~~~~~~~~~~iq~ 297 (407)
T cd01153 282 KAAPAVTIIHHPDVRR 297 (407)
T ss_pred ccccccccccCHHHHH
Confidence 112223777777765
No 36
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Probab=99.23 E-value=1.3e-11 Score=92.00 Aligned_cols=70 Identities=19% Similarity=0.132 Sum_probs=60.8
Q ss_pred CcccceeeCcccccCccCCCCCCCccccCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q psy7726 1 MMFSHYWVPRCSLLARFSSVSPQGDYSSLIPDPGLRFASSLIPLFLGRWCVLGCTWGNLLKATLIAVRYSTVRKQFGEDR 80 (96)
Q Consensus 1 l~F~~vrVP~~~lLg~~~~v~~~G~~~~~~~~~~~~f~~~~~~l~~~R~~~aa~a~g~~~~a~~~a~~ya~~R~qfg~~~ 80 (96)
|.||||+ +++||..+ +||..++..++.+|+.+++.++|.++++++.+++|+++|++||+
T Consensus 246 v~f~dv~---~~~lG~~g----------------~G~~~~~~~l~~~R~~~aa~~~G~a~~al~~a~~ya~~R~~fg~-- 304 (418)
T cd01154 246 VEFDDAE---AYLIGDEG----------------KGIYYILEMLNISRLDNAVAALGIMRRALSEAYHYARHRRAFGK-- 304 (418)
T ss_pred EEecCcC---ccccCCCC----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCC--
Confidence 4678873 67777532 36888899999999999999999999999999999999999999
Q ss_pred CCcccchhhhhccccC
Q psy7726 81 EGRETSVIEYQTQIPR 96 (96)
Q Consensus 81 ~~~e~~i~~~q~~q~~ 96 (96)
||+++|.+|++
T Consensus 305 -----~l~~~~~v~~~ 315 (418)
T cd01154 305 -----PLIDHPLMRRD 315 (418)
T ss_pred -----chhhhHHHHHH
Confidence 99999999864
No 37
>cd01159 NcnH Naphthocyclinone hydroxylase. Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
Probab=99.10 E-value=5.1e-11 Score=86.98 Aligned_cols=79 Identities=14% Similarity=0.047 Sum_probs=59.4
Q ss_pred CcccceeeCcccccCccCCCCCCCccccCCCChhhHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc-
Q psy7726 1 MMFSHYWVPRCSLLARFSSVSPQGDYSSLIPDPGLRFA---SSLIPLFLGRWCVLGCTWGNLLKATLIAVRYSTVRKQF- 76 (96)
Q Consensus 1 l~F~~vrVP~~~lLg~~~~v~~~G~~~~~~~~~~~~f~---~~~~~l~~~R~~~aa~a~g~~~~a~~~a~~ya~~R~qf- 76 (96)
+.|+||+||.+++|+..... .|. ..++. ..+..+...|+.+++.++|.++++++.+++|++.|.+|
T Consensus 182 v~f~~v~Vp~~~~l~~~~~~--~~~--------~~g~~~~~~~~~~~~~~~~~~aa~~lG~a~~~l~~~~~~~~~R~~~~ 251 (370)
T cd01159 182 VVVDDVFVPEHRTLTAGDMM--AGD--------GPGGSTPVYRMPLRQVFPLSFAAVSLGAAEGALAEFLELAGKRVRQY 251 (370)
T ss_pred EEEcceEcCccceecccccc--cCC--------CCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccC
Confidence 57999999999999753210 010 01111 12334567899999999999999999999999999998
Q ss_pred --CCCCCCcccchhhhhccccC
Q psy7726 77 --GEDREGRETSVIEYQTQIPR 96 (96)
Q Consensus 77 --g~~~~~~e~~i~~~q~~q~~ 96 (96)
|+ ||.+||.+|++
T Consensus 252 ~~g~-------~i~~~~~v~~~ 266 (370)
T cd01159 252 GAAV-------KMAEAPITQLR 266 (370)
T ss_pred CCcc-------ccccCHHHHHH
Confidence 45 79999998864
No 38
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
Probab=99.07 E-value=7.5e-11 Score=86.21 Aligned_cols=76 Identities=14% Similarity=0.002 Sum_probs=58.0
Q ss_pred CcccceeeCcccccCccCCCCCCCccccCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hcCCC
Q psy7726 1 MMFSHYWVPRCSLLARFSSVSPQGDYSSLIPDPGLRFASSLIPLFLGRWCVLGCTWGNLLKATLIAVRYSTVRK-QFGED 79 (96)
Q Consensus 1 l~F~~vrVP~~~lLg~~~~v~~~G~~~~~~~~~~~~f~~~~~~l~~~R~~~aa~a~g~~~~a~~~a~~ya~~R~-qfg~~ 79 (96)
|.||||+||.+++||..+. | +. ....+...|+.+++.++|.++.|++.+++|+++|+ +||++
T Consensus 191 v~f~~v~Vp~~~~lg~~~~----g------------~~-~~~~~~~~~l~~aa~~lG~a~~al~~~~~~~~~R~~~~g~~ 253 (377)
T cd01163 191 VTFDNVRVEPDEVLPRPNA----P------------DR-GTLLTAIYQLVLAAVLAGIARAALDDAVAYVRSRTRPWIHS 253 (377)
T ss_pred EEEeeEEECHHHccCCCcc----c------------cc-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcC
Confidence 5799999999999987432 2 11 12234567899999999999999999999999995 88873
Q ss_pred CCCcccchhhhhccccC
Q psy7726 80 REGRETSVIEYQTQIPR 96 (96)
Q Consensus 80 ~~~~e~~i~~~q~~q~~ 96 (96)
. ..++.++|.+|++
T Consensus 254 ~---~~~~~~~~~v~~~ 267 (377)
T cd01163 254 G---AESARDDPYVQQV 267 (377)
T ss_pred C---ccccccCcHHHHH
Confidence 1 1157888888763
No 39
>PTZ00456 acyl-CoA dehydrogenase; Provisional
Probab=99.03 E-value=2.9e-10 Score=88.78 Aligned_cols=62 Identities=11% Similarity=-0.072 Sum_probs=52.6
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCC-----CcccchhhhhccccC
Q psy7726 35 LRFASSLIPLFLGRWCVLGCTWGNLLKATLIAVRYSTVRKQFGEDRE-----GRETSVIEYQTQIPR 96 (96)
Q Consensus 35 ~~f~~~~~~l~~~R~~~aa~a~g~~~~a~~~a~~ya~~R~qfg~~~~-----~~e~~i~~~q~~q~~ 96 (96)
+|+..++..|+..|+.+++.++|++++|++.|++|+++|+||+...+ ....||++||.+|++
T Consensus 305 ~Gl~~~~~~mn~aRl~vaa~~lG~a~~Al~~Al~YAk~R~Qfr~~~~~~~~~~~~~~I~~~~~Vr~~ 371 (622)
T PTZ00456 305 AGMKQMFTFMNTARVGTALEGVCHAELAFQNALRYARERRSMRALSGTKEPEKPADRIICHANVRQN 371 (622)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccccCCCCccccCHHHHHH
Confidence 47888899999999999999999999999999999999999854321 124589999998864
No 40
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=99.03 E-value=1.2e-10 Score=85.29 Aligned_cols=69 Identities=12% Similarity=0.107 Sum_probs=55.2
Q ss_pred CcccceeeCcccccCccCCCCCCCccccCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q psy7726 1 MMFSHYWVPRCSLLARFSSVSPQGDYSSLIPDPGLRFASSLIPLFLGRWCVLGCTWGNLLKATLIAVRYSTVRKQFGEDR 80 (96)
Q Consensus 1 l~F~~vrVP~~~lLg~~~~v~~~G~~~~~~~~~~~~f~~~~~~l~~~R~~~aa~a~g~~~~a~~~a~~ya~~R~qfg~~~ 80 (96)
+.||||+||.+++||..+ ++|......+...|+.++..+.|+ ++.+++|+.+|.+||+
T Consensus 209 l~f~~v~Vp~~~~lg~~~----------------~g~~~~~~~l~~~r~~~~~~~~~~----~~~a~~~a~~r~~~g~-- 266 (380)
T cd01152 209 VFLDDVRVPDANRVGEVN----------------DGWKVAMTTLNFERVSIGGSAATF----FELLLARLLLLTRDGR-- 266 (380)
T ss_pred EEecCcCcchhcccCCCC----------------chHHHHHHHHHhcccccchhhhHH----HHHHHHHHHHHHhcCC--
Confidence 479999999999998632 147677778888898877655554 4566789999999998
Q ss_pred CCcccchhhhhccccC
Q psy7726 81 EGRETSVIEYQTQIPR 96 (96)
Q Consensus 81 ~~~e~~i~~~q~~q~~ 96 (96)
||.+||.+|++
T Consensus 267 -----~l~~~~~vq~~ 277 (380)
T cd01152 267 -----PLIDDPLVRQR 277 (380)
T ss_pred -----CcccCHHHHHH
Confidence 99999999874
No 41
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0055114 oxidation-reduction process; PDB: 2EBA_A 1RX0_C 1R2J_A 2OKU_A 3MKH_C 2JIF_C 3GQT_D 3EON_D 3EOM_C 3D6B_A ....
Probab=98.94 E-value=1.3e-09 Score=69.76 Aligned_cols=54 Identities=24% Similarity=0.248 Sum_probs=51.4
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCcccchhhhhcccc
Q psy7726 35 LRFASSLIPLFLGRWCVLGCTWGNLLKATLIAVRYSTVRKQFGEDREGRETSVIEYQTQIP 95 (96)
Q Consensus 35 ~~f~~~~~~l~~~R~~~aa~a~g~~~~a~~~a~~ya~~R~qfg~~~~~~e~~i~~~q~~q~ 95 (96)
+||.+++..|..+|+.+++.++|.++.+++.+.+|+..|++||+ |+.+++.+|.
T Consensus 2 ~G~~~~~~~l~~~R~~~~~~~~g~~~~~l~~a~~~~~~r~~~g~-------~l~~~~~v~~ 55 (150)
T PF00441_consen 2 QGWAVALDTLNHERLMIAAMALGIARRALDEAIEYARRRRQFGK-------PLAEHPAVRR 55 (150)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEETTE-------EGGGSHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-------cccchhhhHH
Confidence 48999999999999999999999999999999999999999998 8999998875
No 42
>KOG1469|consensus
Probab=98.94 E-value=4.5e-10 Score=80.38 Aligned_cols=70 Identities=20% Similarity=0.163 Sum_probs=62.2
Q ss_pred CcccceeeCcccccCccCCCCCCCccccCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q psy7726 1 MMFSHYWVPRCSLLARFSSVSPQGDYSSLIPDPGLRFASSLIPLFLGRWCVLGCTWGNLLKATLIAVRYSTVRKQFGEDR 80 (96)
Q Consensus 1 l~F~~vrVP~~~lLg~~~~v~~~G~~~~~~~~~~~~f~~~~~~l~~~R~~~aa~a~g~~~~a~~~a~~ya~~R~qfg~~~ 80 (96)
|+|+|||||..|||-++ | +||.++.+.|..+|+..+...+|.+.+++++--+-+..|..||+
T Consensus 213 i~F~~VrVP~~NmlLGe------G----------rGFEIaQGRLGPGRiHHcMRliG~aERal~lm~~R~~sRiaFgk-- 274 (392)
T KOG1469|consen 213 IHFENVRVPATNMLLGE------G----------RGFEIAQGRLGPGRIHHCMRLIGLAERALQLMKERALSRIAFGK-- 274 (392)
T ss_pred EEEEEEEeeccceeecC------C----------CcceeeccccCCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc--
Confidence 57999999999998653 3 37989999999999999999999999999999999999999999
Q ss_pred CCcccchhhhhcc
Q psy7726 81 EGRETSVIEYQTQ 93 (96)
Q Consensus 81 ~~~e~~i~~~q~~ 93 (96)
+|..|.++
T Consensus 275 -----~l~q~~s~ 282 (392)
T KOG1469|consen 275 -----KLVQHGSV 282 (392)
T ss_pred -----hhhhcchH
Confidence 77766543
No 43
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=98.64 E-value=5.9e-08 Score=74.68 Aligned_cols=53 Identities=13% Similarity=0.249 Sum_probs=47.9
Q ss_pred CcccceeeCcccccCccCCCCCCCccccCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy7726 1 MMFSHYWVPRCSLLARFSSVSPQGDYSSLIPDPGLRFASSLIPLFLGRWCVLGCTWGNLLKATLIAVRYST 71 (96)
Q Consensus 1 l~F~~vrVP~~~lLg~~~~v~~~G~~~~~~~~~~~~f~~~~~~l~~~R~~~aa~a~g~~~~a~~~a~~ya~ 71 (96)
|+|||| |.+|+||..+ +||..++..|+.+|+.+++.++|++++|++.|++|+.
T Consensus 221 V~FddV--P~~~vLG~~g----------------~G~~~a~~~L~~~Rl~~aA~~vGia~~ale~av~ya~ 273 (520)
T PTZ00457 221 VVFENT--PAADVVGVVG----------------EGFKDAMITLFTEQYLYAASLLGIMKRVVQELRGSNA 273 (520)
T ss_pred EEECCC--CHHHhCCCCC----------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579997 9999998632 2688999999999999999999999999999999996
No 44
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=98.51 E-value=8.2e-08 Score=73.21 Aligned_cols=70 Identities=11% Similarity=0.027 Sum_probs=55.2
Q ss_pred CcccceeeCcccc--cCccCCCCCCCccccCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCC
Q psy7726 1 MMFSHYWVPRCSL--LARFSSVSPQGDYSSLIPDPGLRFASSLIPLFLGRWCVLGCTWGNLLKATLIAVRYSTVRKQFGE 78 (96)
Q Consensus 1 l~F~~vrVP~~~l--Lg~~~~v~~~G~~~~~~~~~~~~f~~~~~~l~~~R~~~aa~a~g~~~~a~~~a~~ya~~R~qfg~ 78 (96)
|+||||+||.|++ +|.+.. .+.+|...+. ++.++..++|.+..+++.++.|+.. .+|+.
T Consensus 255 vvFDdV~VPwe~VF~~g~~e~-------------a~~~f~~~~~-----~~~~~~~~~g~~~~~ld~~~g~a~~-~a~~~ 315 (477)
T TIGR02309 255 VIFDDVLVPWERIFILGDVEL-------------CNNAYAATGA-----VNHMAHQVVALKIAKTEAFLGVAAL-MAEGI 315 (477)
T ss_pred EEeCceeccHHHhhhcCCHHH-------------HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhh
Confidence 5799999999999 775300 0124544432 2667999999999999999999999 99999
Q ss_pred CCCCcccchhhhhccccC
Q psy7726 79 DREGRETSVIEYQTQIPR 96 (96)
Q Consensus 79 ~~~~~e~~i~~~q~~q~~ 96 (96)
++.+||.+|++
T Consensus 316 -------gi~~~q~VQ~k 326 (477)
T TIGR02309 316 -------GADGFQHVQEK 326 (477)
T ss_pred -------CcccchHHHHH
Confidence 89999999864
No 45
>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3AFE_C 3AFF_A 2JBT_D 2JBS_C 2JBR_B 2RFQ_B 2OR0_B.
Probab=95.70 E-value=0.014 Score=36.89 Aligned_cols=41 Identities=12% Similarity=-0.076 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCcccchhhhhccc
Q psy7726 49 WCVLGCTWGNLLKATLIAVRYSTVRKQFGEDREGRETSVIEYQTQI 94 (96)
Q Consensus 49 ~~~aa~a~g~~~~a~~~a~~ya~~R~qfg~~~~~~e~~i~~~q~~q 94 (96)
+++++..+|+++.+++.+++|+..|...+... ++.+.+.+|
T Consensus 1 L~~aa~~lG~A~~al~~~~~~~~~r~~~~~~~-----~~~~~p~~q 41 (134)
T PF08028_consen 1 LSFAAVYLGIARGALDEFVEYLRGRVRASGGA-----PLADDPYIQ 41 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS-----BCCC-HHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-----chhcCHHHH
Confidence 57899999999999999999999888822222 666666555
No 46
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=50.34 E-value=39 Score=24.27 Aligned_cols=40 Identities=15% Similarity=0.000 Sum_probs=27.9
Q ss_pred hhhHHHHHHhHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHhhh
Q psy7726 33 PGLRFASSLIPLFLGRWCVLGC---------------------------TWGNLLKATLIAVRYSTV 72 (96)
Q Consensus 33 ~~~~f~~~~~~l~~~R~~~aa~---------------------------a~g~~~~a~~~a~~ya~~ 72 (96)
.+++|..+|..-.+.=+.++.. ..|.++++|+.++||...
T Consensus 108 sre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLtYlgs~r~vPnYNvMGvAKAaLEasvRyLA~ 174 (259)
T COG0623 108 SREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLTYLGSERVVPNYNVMGVAKAALEASVRYLAA 174 (259)
T ss_pred CHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEEeccceeecCCCchhHHHHHHHHHHHHHHHH
Confidence 4567888877655544444332 358999999999999853
No 47
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=45.37 E-value=6.2 Score=31.03 Aligned_cols=15 Identities=13% Similarity=0.463 Sum_probs=13.2
Q ss_pred CcccceeeCcccccC
Q psy7726 1 MMFSHYWVPRCSLLA 15 (96)
Q Consensus 1 l~F~~vrVP~~~lLg 15 (96)
+.||||.||=|+++-
T Consensus 266 vVFDdVfVPWErVF~ 280 (519)
T TIGR02310 266 LVMDSVFIPWENVLI 280 (519)
T ss_pred EEeCCcccchHHcee
Confidence 479999999999974
No 48
>PF08292 RNA_pol_Rbc25: RNA polymerase III subunit Rpc25; InterPro: IPR013238 Rpc25 is a strongly conserved subunit of RNA polymerase III and has homology to Rpa43 in RNA polymerase I, Rpb7 in RNA polymerase II and the archaeal RpoE subunit. Rpc25 is required for transcription initiation and is not essential for the elongating properties of RNA polymerase III [].; PDB: 2CKZ_D 3AYH_B.
Probab=40.62 E-value=11 Score=23.88 Aligned_cols=13 Identities=23% Similarity=0.562 Sum_probs=10.9
Q ss_pred cccceeeCccccc
Q psy7726 2 MFSHYWVPRCSLL 14 (96)
Q Consensus 2 ~F~~vrVP~~~lL 14 (96)
+|||+.||.++|.
T Consensus 25 FFddI~IP~~~L~ 37 (122)
T PF08292_consen 25 FFDDIFIPPSLLP 37 (122)
T ss_dssp CEEEEEEECCCC-
T ss_pred ccccEEECHHHCC
Confidence 5899999999886
No 49
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.10 E-value=27 Score=27.44 Aligned_cols=15 Identities=20% Similarity=0.534 Sum_probs=13.0
Q ss_pred CcccceeeCcccccC
Q psy7726 1 MMFSHYWVPRCSLLA 15 (96)
Q Consensus 1 l~F~~vrVP~~~lLg 15 (96)
|.||||.||=|+++-
T Consensus 262 lVfDdVfVPWERVf~ 276 (493)
T COG2368 262 LVFDDVFVPWERVFI 276 (493)
T ss_pred EEecccccchhheee
Confidence 479999999999874
Done!