RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7726
         (96 letters)



>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II,
          domains 3 and 4 {Rat (Rattus norvegicus) [TaxId:
          10116]}
          Length = 183

 Score = 41.4 bits (96), Expect = 2e-06
 Identities = 17/46 (36%), Positives = 27/46 (58%)

Query: 48 RWCVLGCTWGNLLKATLIAVRYSTVRKQFGEDREGRETSVIEYQTQ 93
          R  ++G    +L KA  IA+RYS VR+Q    +   E  ++++QTQ
Sbjct: 5  RSFLVGNAAQSLSKACTIAIRYSAVRRQSEIKQSEPEPQILDFQTQ 50


>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3
          and 4 {Thale cress (Arabidopsis thaliana) [TaxId:
          3702]}
          Length = 189

 Score = 32.9 bits (74), Expect = 0.003
 Identities = 21/47 (44%), Positives = 27/47 (57%)

Query: 47 GRWCVLGCTWGNLLKATLIAVRYSTVRKQFGEDREGRETSVIEYQTQ 93
           R  ++      L +A  IA RYS VR+QFG    G ET VI+Y+TQ
Sbjct: 12 VRQTIVADASNALSRAVCIATRYSAVRRQFGAHNGGIETQVIDYKTQ 58


>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains
           1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 267

 Score = 30.1 bits (67), Expect = 0.025
 Identities = 8/26 (30%), Positives = 16/26 (61%)

Query: 1   MMFSHYWVPRCSLLARFSSVSPQGDY 26
           +   +Y +PR ++L +++ V P G Y
Sbjct: 240 LKMDNYRIPRENMLMKYAQVKPDGTY 265


>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and
           2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 271

 Score = 27.0 bits (59), Expect = 0.32
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 1   MMFSHYWVPRCSLLARFSSVSPQGDYSS 28
           +MF H  +PR  +L R S V+ +G+Y  
Sbjct: 241 LMFDHVRIPRDQMLMRLSKVTREGEYVP 268


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.139    0.452 

Gapped
Lambda     K      H
   0.267   0.0497    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 354,063
Number of extensions: 13252
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 4
Length of query: 96
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 37
Effective length of database: 1,597,526
Effective search space: 59108462
Effective search space used: 59108462
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.4 bits)