BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7728
(65 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PET|A Chain A, Lutheran Glycoprotein, N-Terminal Domains 1 And 2.
pdb|2PF6|A Chain A, Lutheran Glycoprotein, N-Terminal Domains 1 And 2
pdb|2PF6|B Chain B, Lutheran Glycoprotein, N-Terminal Domains 1 And 2
Length = 231
Score = 35.0 bits (79), Expect = 0.011, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 10 RLYQFAPPSSIEIVGHPSNSKIEIREN--QEITLECLVKNAKPAAKIVWYRGNTELKL 65
RL FA P + E+ P+ + + E+ QEI C +N PA KI WYR L++
Sbjct: 109 RLNVFAKPEATEV--SPNKGTLSVMEDSAQEIA-TCNSRNGNPAPKITWYRNGQRLEV 163
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 30.0 bits (66), Expect = 0.34, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 27 SNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELKL 65
S + +RE +E T+ C +K+ + W R N++ KL
Sbjct: 217 SKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKL 255
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 30.0 bits (66), Expect = 0.38, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 27 SNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELKL 65
S + +RE +E T+ C +K+ + W R N++ KL
Sbjct: 192 SKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKL 230
>pdb|2QHL|A Chain A, Crystal Structure Of Novel Immune-Type Receptor 10
Extracellular Fragment From Ictalurus Punctatus
pdb|2QHL|B Chain B, Crystal Structure Of Novel Immune-Type Receptor 10
Extracellular Fragment From Ictalurus Punctatus
pdb|2QHL|C Chain C, Crystal Structure Of Novel Immune-Type Receptor 10
Extracellular Fragment From Ictalurus Punctatus
pdb|2QHL|D Chain D, Crystal Structure Of Novel Immune-Type Receptor 10
Extracellular Fragment From Ictalurus Punctatus
pdb|2QHL|E Chain E, Crystal Structure Of Novel Immune-Type Receptor 10
Extracellular Fragment From Ictalurus Punctatus
Length = 111
Score = 28.5 bits (62), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 33 IRENQEITLECLVKNAKPAAKIVWYR 58
++ + +T+EC + K K+ WYR
Sbjct: 11 VKRGENVTMECSMSKVKDKDKLAWYR 36
>pdb|2QJD|A Chain A, Crystal Structure Of Novel Immune-Type Receptor 10
Extracellular Fragment Mutant N30d
pdb|2QJD|B Chain B, Crystal Structure Of Novel Immune-Type Receptor 10
Extracellular Fragment Mutant N30d
Length = 110
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 33 IRENQEITLECLVKNAKPAAKIVWYR 58
++ + +T+EC + K K+ WYR
Sbjct: 10 VKRGENVTMECSMSKVKDKNKLAWYR 35
>pdb|3OQ3|B Chain B, Structural Basis Of Type-I Interferon Sequestration By A
Poxvirus Decoy Receptor
Length = 329
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 16 PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
PPS I P ++ + I L C + AK I WY+ N EL
Sbjct: 128 PPSCI-----PETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQEL 170
>pdb|2JJV|A Chain A, Structure Of Human Signal Regulatory Protein (sirp)
Beta(2)
pdb|2JJV|B Chain B, Structure Of Human Signal Regulatory Protein (sirp)
Beta(2)
Length = 127
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 28 NSKIEIRENQEITLECLVKNAKPAAKIVWYRG 59
+ I + + TL C V + P I W+RG
Sbjct: 10 DKSISVAAGESATLHCTVTSLIPVGPIQWFRG 41
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 32 EIRENQEITLECLVKNAKPAAKIVWYRGNTELKL 65
E+ + L+C V N K IVWY+ E+ +
Sbjct: 17 EVTGECNVLLKCKVANIKKETHIVWYKDEREISV 50
>pdb|3RBS|A Chain A, Crystal Structure Of The Myomesin Domains 10 And 11
Length = 207
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 32 EIRENQEITLECLVKNAKPAAKIVWYRGNTELKL 65
E+ + L+C V N K IVWY+ E+ +
Sbjct: 127 EVTGECNVLLKCKVANIKKETHIVWYKDEREISV 160
>pdb|2Y23|A Chain A, Crystal Structure Of The Myomesin Domains My9-My11
Length = 312
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 32 EIRENQEITLECLVKNAKPAAKIVWYRGNTELKL 65
E+ + L+C V N K IVWY+ E+ +
Sbjct: 232 EVTGECNVLLKCKVANIKKETHIVWYKDEREISV 265
>pdb|3FFC|D Chain D, Crystal Structure Of Cf34 Tcr In Complex With Hla-B8FLR
pdb|3FFC|I Chain I, Crystal Structure Of Cf34 Tcr In Complex With Hla-B8FLR
Length = 202
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 33 IRENQEITLECLVKNAKPAAKIVWYR 58
++E + +TL+C + P+ + WY+
Sbjct: 11 VQEKEAVTLDCTYDTSDPSYGLFWYK 36
>pdb|2D9C|A Chain A, Solution Structure Of The First Ig-Like Domain Of
Signal- Regulatory Protein Beta-1 (Sirp-Beta-1)
Length = 136
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 31 IEIRENQEITLECLVKNAKPAAKIVWYRG 59
+ + + TL C + + P I+W+RG
Sbjct: 18 VSVAAGESATLRCAMTSLIPVGPIMWFRG 46
>pdb|1GL4|B Chain B, Nidogen-1 G2PERLECAN IG3 COMPLEX
Length = 98
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 32 EIRENQEITLECLVKNAKPAAKIVWYR 58
+R ++T C K+ PA +VW R
Sbjct: 21 SVRPGADVTFICTAKSKSPAYTLVWTR 47
>pdb|4A17|B Chain B, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 2.
pdb|4A1A|B Chain B, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 3.
pdb|4A1C|B Chain B, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 4.
pdb|4A1E|B Chain B, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 1
Length = 391
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 18 SSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTE 62
S + ++ H + SK+ +R+ + LE V K A K+ + + E
Sbjct: 154 SVVRVIAHTNMSKLNLRQKKNHILEIQVNGGKVAEKVAFAKSLLE 198
>pdb|3KXF|D Chain D, Crystal Structure Of Sb27 Tcr In Complex With The
'restriction Triad' Mutant Hla-B3508-13mer
pdb|3KXF|G Chain G, Crystal Structure Of Sb27 Tcr In Complex With The
'restriction Triad' Mutant Hla-B3508-13mer
pdb|3KXF|N Chain N, Crystal Structure Of Sb27 Tcr In Complex With The
'restriction Triad' Mutant Hla-B3508-13mer
pdb|3KXF|M Chain M, Crystal Structure Of Sb27 Tcr In Complex With The
'restriction Triad' Mutant Hla-B3508-13mer
Length = 204
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 7/32 (21%), Positives = 20/32 (62%)
Query: 27 SNSKIEIRENQEITLECLVKNAKPAAKIVWYR 58
+ ++I + E++++TL+C+ + + WY+
Sbjct: 6 AQTEISVVEDEDVTLDCVYETRDTTYYLFWYK 37
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
APP I+ + PS +++++ EC + P K++WY+ TE++
Sbjct: 97 APPRFIKKL-EPSRI---VKQDEHTRYECKI-GGSPEIKVLWYKDETEIQ 141
>pdb|3B5T|A Chain A, Crystal Structure Of Novel Immune-type Receptor 10
Se-met Extracellular Fragment Mutant N30d
pdb|3B5T|B Chain B, Crystal Structure Of Novel Immune-type Receptor 10
Se-met Extracellular Fragment Mutant N30d
pdb|3B5T|C Chain C, Crystal Structure Of Novel Immune-type Receptor 10
Se-met Extracellular Fragment Mutant N30d
pdb|3B5T|D Chain D, Crystal Structure Of Novel Immune-type Receptor 10
Se-met Extracellular Fragment Mutant N30d
pdb|3B5T|E Chain E, Crystal Structure Of Novel Immune-type Receptor 10
Se-met Extracellular Fragment Mutant N30d
Length = 111
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 33 IRENQEITLECLVKNAKPAAKIVWYR 58
++ + +T EC K K+ WYR
Sbjct: 11 VKRGENVTXECSXSKVKDKNKLAWYR 36
>pdb|2JJU|A Chain A, Structure Of Human Signal Regulatory Protein (Sirp) Beta
pdb|2JJU|B Chain B, Structure Of Human Signal Regulatory Protein (Sirp) Beta
Length = 127
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 31 IEIRENQEITLECLVKNAKPAAKIVWYRG 59
+ + + TL C + + P I+W+RG
Sbjct: 13 VSVAAGESATLRCAMTSLIPVGPIMWFRG 41
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 8/32 (25%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 33 IRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
+++++ EC + P K++WY+ TE++
Sbjct: 303 VKQDEHTRYECKI-GGSPEIKVLWYKDETEIQ 333
>pdb|2AK4|D Chain D, Crystal Structure Of Sb27 Tcr In Complex With Hla-B3508-
13mer Peptide
pdb|2AK4|I Chain I, Crystal Structure Of Sb27 Tcr In Complex With Hla-B3508-
13mer Peptide
pdb|2AK4|N Chain N, Crystal Structure Of Sb27 Tcr In Complex With Hla-B3508-
13mer Peptide
pdb|2AK4|T Chain T, Crystal Structure Of Sb27 Tcr In Complex With Hla-B3508-
13mer Peptide
Length = 211
Score = 25.4 bits (54), Expect = 7.9, Method: Composition-based stats.
Identities = 7/32 (21%), Positives = 19/32 (59%)
Query: 27 SNSKIEIRENQEITLECLVKNAKPAAKIVWYR 58
+ ++I + E +++TL+C+ + + WY+
Sbjct: 9 AQTEISVVEKEDVTLDCVYETRDTTYYLFWYK 40
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 25.0 bits (53), Expect = 9.6, Method: Composition-based stats.
Identities = 8/32 (25%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 33 IRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
+++++ EC + P K++WY+ TE++
Sbjct: 111 VKQDEHTRYECKI-GGSPEIKVLWYKDETEIQ 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,962,283
Number of Sequences: 62578
Number of extensions: 56660
Number of successful extensions: 202
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 182
Number of HSP's gapped (non-prelim): 23
length of query: 65
length of database: 14,973,337
effective HSP length: 36
effective length of query: 29
effective length of database: 12,720,529
effective search space: 368895341
effective search space used: 368895341
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)