Query psy7728
Match_columns 65
No_of_seqs 154 out of 1003
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 17:17:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7728.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7728hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05885 Ig2_Necl-4 Second immu 99.2 2.5E-11 5.4E-16 65.3 4.4 28 38-65 1-28 (80)
2 cd05755 Ig2_ICAM-1_like Second 99.1 1.7E-10 3.6E-15 64.4 5.7 33 32-64 12-46 (100)
3 cd05883 Ig2_Necl-2 Second immu 99.1 9.9E-11 2.1E-15 63.3 4.6 28 38-65 1-28 (82)
4 cd05772 IgC_SIRP Signal-regula 99.1 1.9E-10 4.1E-15 65.0 4.9 49 12-64 1-50 (111)
5 cd04975 Ig4_SCFR_like Fourth i 98.9 5.9E-09 1.3E-13 57.9 5.2 36 29-64 11-46 (101)
6 cd05884 Ig2_Necl-3 Second immu 98.8 6.5E-09 1.4E-13 55.9 4.5 27 39-65 2-28 (83)
7 cd05761 Ig2_Necl-1-4_like Seco 98.8 7E-09 1.5E-13 55.3 4.6 27 39-65 2-28 (82)
8 cd07705 Ig2_Necl-1 Second immu 98.8 7.6E-09 1.6E-13 55.5 4.5 27 39-65 2-28 (83)
9 cd05749 Ig2_Tyro3_like Second 98.8 1.9E-08 4.2E-13 53.8 5.2 33 31-64 8-41 (81)
10 cd05737 Ig_Myomesin_like_C C-t 98.8 2.1E-08 4.5E-13 54.2 5.3 34 30-64 10-43 (92)
11 cd05724 Ig2_Robo Second immuno 98.8 2.8E-08 6.1E-13 52.4 5.5 34 31-64 6-39 (86)
12 cd07693 Ig1_Robo First immunog 98.8 2.6E-08 5.6E-13 53.4 5.4 34 30-64 10-43 (100)
13 cd05771 IgC_Tapasin_R Tapasin- 98.8 7.1E-08 1.5E-12 55.5 7.1 53 5-62 27-80 (139)
14 cd05759 Ig2_KIRREL3-like Secon 98.8 2.2E-08 4.8E-13 52.9 4.5 26 39-64 2-27 (82)
15 cd05745 Ig3_Peroxidasin Third 98.7 1.9E-08 4.2E-13 52.3 3.9 29 35-64 1-29 (74)
16 cd05857 Ig2_FGFR Second immuno 98.7 3.7E-08 8.1E-13 52.0 5.0 32 32-64 5-36 (85)
17 PF08205 C2-set_2: CD80-like C 98.7 1.9E-08 4.2E-13 53.7 3.6 28 36-63 14-41 (89)
18 cd05740 Ig_CEACAM_D4 Fourth im 98.7 6.3E-08 1.4E-12 52.6 5.7 42 20-63 2-43 (91)
19 cd05752 Ig1_FcgammaR_like Frst 98.7 5.1E-08 1.1E-12 51.7 5.2 32 32-63 11-42 (78)
20 cd05730 Ig3_NCAM-1_like Third 98.7 6E-08 1.3E-12 52.4 5.4 34 30-64 12-45 (95)
21 cd05739 Ig3_RPTP_IIa_LAR_like 98.7 4.8E-08 1E-12 50.6 4.2 28 36-64 1-28 (69)
22 cd05867 Ig4_L1-CAM_like Fourth 98.7 4.4E-08 9.6E-13 51.1 4.1 28 36-64 1-28 (76)
23 cd05851 Ig3_Contactin-1 Third 98.7 6.8E-08 1.5E-12 52.0 4.8 32 31-63 11-42 (88)
24 cd05894 Ig_C5_MyBP-C C5 immuno 98.6 1E-07 2.3E-12 51.1 5.3 34 30-64 4-37 (86)
25 cd05747 Ig5_Titin_like M5, fif 98.6 1.2E-07 2.5E-12 51.1 5.4 34 30-64 12-45 (92)
26 cd05722 Ig1_Neogenin First imm 98.6 1.1E-07 2.4E-12 51.4 5.2 33 31-64 9-41 (95)
27 cd05762 Ig8_MLCK Eighth immuno 98.6 1.1E-07 2.3E-12 52.3 5.1 34 30-64 9-42 (98)
28 cd05868 Ig4_NrCAM Fourth immun 98.6 6.9E-08 1.5E-12 50.6 4.0 28 36-64 1-28 (76)
29 cd05848 Ig1_Contactin-5 First 98.6 7.7E-08 1.7E-12 52.4 4.1 30 34-64 17-46 (94)
30 cd05891 Ig_M-protein_C C-termi 98.6 1.5E-07 3.3E-12 51.0 5.0 34 30-64 10-43 (92)
31 cd04972 Ig_TrkABC_d4 Fourth do 98.6 1.5E-07 3.3E-12 50.5 4.9 31 32-63 11-41 (90)
32 cd05728 Ig4_Contactin-2-like F 98.6 1.7E-07 3.6E-12 50.0 4.7 33 31-64 9-41 (85)
33 cd04978 Ig4_L1-NrCAM_like Four 98.5 1.7E-07 3.6E-12 48.5 4.1 28 36-64 1-28 (76)
34 PF07679 I-set: Immunoglobulin 98.5 4.2E-07 9.2E-12 48.1 5.7 34 30-64 9-42 (90)
35 cd05850 Ig1_Contactin-2 First 98.5 1.8E-07 4E-12 50.8 4.1 29 35-64 18-46 (94)
36 PF13895 Ig_2: Immunoglobulin 98.5 5.9E-07 1.3E-11 46.1 5.8 32 32-64 10-41 (80)
37 cd04973 Ig1_FGFR First immunog 98.5 3.1E-07 6.7E-12 48.4 4.6 32 31-64 4-35 (79)
38 cd05863 Ig2_VEGFR-3 Second imm 98.5 1.5E-07 3.3E-12 48.8 3.1 25 39-64 1-25 (67)
39 cd05859 Ig4_PDGFR-alpha Fourth 98.5 3.4E-07 7.3E-12 50.7 4.7 33 31-64 13-45 (101)
40 cd05732 Ig5_NCAM-1_like Fifth 98.5 3.7E-07 8.1E-12 49.1 4.7 32 31-63 11-42 (96)
41 cd05869 Ig5_NCAM-1 Fifth immun 98.5 7.6E-07 1.7E-11 48.4 5.5 30 33-63 14-43 (97)
42 cd05750 Ig_Pro_neuregulin Immu 98.5 2.4E-07 5.2E-12 47.7 3.3 26 39-64 1-26 (75)
43 cd05856 Ig2_FGFRL1-like Second 98.4 3E-07 6.6E-12 47.8 3.6 32 31-63 4-35 (82)
44 cd04968 Ig3_Contactin_like Thi 98.4 5E-07 1.1E-11 48.2 4.2 32 31-63 11-42 (88)
45 cd05754 Ig3_Perlecan_like Thir 98.4 7.9E-07 1.7E-11 47.1 4.9 33 31-63 11-43 (85)
46 cd05892 Ig_Myotilin_C C-termin 98.4 3.7E-07 8.1E-12 48.1 3.4 25 39-64 1-25 (75)
47 cd05873 Ig_Sema4D_like Immunog 98.4 1.2E-06 2.6E-11 47.6 5.5 33 30-64 5-37 (87)
48 cd05870 Ig5_NCAM-2 Fifth immun 98.4 1.4E-06 3.1E-11 47.4 5.7 28 31-59 11-38 (98)
49 cd04969 Ig5_Contactin_like Fif 98.4 6.4E-07 1.4E-11 46.3 4.1 28 36-64 1-28 (73)
50 cd05874 Ig6_NrCAM Sixth immuno 98.4 4.4E-07 9.6E-12 47.8 3.5 24 39-63 1-24 (77)
51 cd07704 Ig2_Nectin-3-4_like Se 98.4 6.1E-07 1.3E-11 49.8 4.1 30 30-59 10-40 (97)
52 cd05852 Ig5_Contactin-1 Fifth 98.4 5.6E-07 1.2E-11 47.0 3.7 27 36-63 1-27 (73)
53 cd05773 Ig8_hNephrin_like Eigh 98.4 1.1E-06 2.4E-11 49.1 5.1 29 35-64 22-50 (109)
54 cd05753 Ig2_FcgammaR_like Seco 98.4 7.9E-07 1.7E-11 47.5 4.4 32 32-63 10-41 (83)
55 cd05758 Ig5_KIRREL3-like Fifth 98.4 2.3E-06 5E-11 46.6 6.2 33 31-64 11-44 (98)
56 cd00098 IgC Immunoglobulin Con 98.4 7.5E-07 1.6E-11 47.7 4.1 31 34-64 11-42 (95)
57 cd05760 Ig2_PTK7 Second immuno 98.4 5E-07 1.1E-11 47.3 3.3 25 39-64 1-25 (77)
58 cd05766 IgC_MHC_II_beta Class 98.4 1.4E-06 2.9E-11 47.8 5.1 32 33-64 11-43 (94)
59 cd05723 Ig4_Neogenin Fourth im 98.3 7.9E-07 1.7E-11 45.9 3.7 26 38-64 1-26 (71)
60 cd05733 Ig6_L1-CAM_like Sixth 98.3 6.1E-07 1.3E-11 47.0 3.3 24 39-63 1-24 (77)
61 cd05865 Ig1_NCAM-1 First immun 98.3 9.8E-07 2.1E-11 48.4 4.2 31 32-63 11-43 (96)
62 cd05849 Ig1_Contactin-1 First 98.3 1.3E-06 2.8E-11 47.5 4.5 28 36-64 19-46 (93)
63 cd05744 Ig_Myotilin_C_like Imm 98.3 8.3E-07 1.8E-11 46.4 3.5 25 39-64 1-25 (75)
64 PHA02785 IL-beta-binding prote 98.3 5.4E-06 1.2E-10 53.9 8.0 53 9-64 211-265 (326)
65 cd05743 Ig_Perlecan_D2_like Im 98.3 1E-06 2.2E-11 46.1 3.8 27 36-63 1-27 (78)
66 cd05893 Ig_Palladin_C C-termin 98.3 7.8E-07 1.7E-11 46.7 3.3 25 39-64 1-25 (75)
67 cd05895 Ig_Pro_neuregulin-1 Im 98.3 7E-07 1.5E-11 46.4 3.0 26 39-64 1-26 (76)
68 cd05756 Ig1_IL1R_like First im 98.3 8.9E-07 1.9E-11 48.4 3.4 32 31-62 9-44 (94)
69 cd04979 Ig_Semaphorin_C Immuno 98.3 2E-06 4.3E-11 46.0 4.7 31 31-63 6-36 (89)
70 cd05875 Ig6_hNeurofascin_like 98.3 1.1E-06 2.3E-11 46.3 3.5 24 39-63 1-24 (77)
71 PHA02826 IL-1 receptor-like pr 98.3 5.1E-06 1.1E-10 51.9 6.7 33 32-64 140-176 (227)
72 cd05727 Ig2_Contactin-2-like S 98.3 1.7E-06 3.6E-11 47.9 3.9 33 31-63 13-45 (96)
73 cd05729 Ig2_FGFR_like Second i 98.3 4.7E-06 1E-10 43.3 5.5 32 31-63 4-35 (85)
74 cd05768 IgC_CH4 CH4 domain (fo 98.3 2.6E-06 5.6E-11 47.3 4.6 31 34-64 14-45 (102)
75 cd04967 Ig1_Contactin First Ig 98.3 2.1E-06 4.5E-11 46.1 4.1 29 34-63 17-45 (91)
76 smart00407 IGc1 Immunoglobulin 98.2 2E-06 4.3E-11 45.0 3.9 25 39-63 2-27 (75)
77 cd04976 Ig2_VEGFR Second immun 98.2 1.3E-06 2.8E-11 45.2 3.1 25 39-64 1-25 (71)
78 cd05735 Ig8_DSCAM Eight immuno 98.2 2.5E-06 5.5E-11 45.8 4.3 27 36-63 1-27 (88)
79 cd05864 Ig2_VEGFR-2 Second imm 98.2 1.7E-06 3.8E-11 45.0 3.0 24 40-64 2-25 (70)
80 cd05738 Ig2_RPTP_IIa_LAR_like 98.2 2E-06 4.3E-11 44.7 3.1 25 39-64 1-25 (74)
81 cd05748 Ig_Titin_like Immunogl 98.2 3.1E-06 6.7E-11 43.6 3.8 25 38-63 1-25 (74)
82 smart00408 IGc2 Immunoglobulin 98.2 4.8E-06 1E-10 40.2 4.3 29 35-64 1-29 (63)
83 cd05746 Ig4_Peroxidasin Fourth 98.2 1.6E-06 3.6E-11 44.4 2.7 25 39-64 1-25 (69)
84 cd05769 IgC_TCR_beta T cell re 98.2 3.9E-06 8.4E-11 47.7 4.4 31 34-64 16-47 (115)
85 cd05726 Ig4_Robo Fhird immunog 98.2 2.7E-06 5.7E-11 45.6 3.5 26 36-62 1-26 (90)
86 cd07689 Ig2_VCAM-1 Second immu 98.2 3.7E-06 8.1E-11 46.9 4.1 32 32-63 11-44 (99)
87 cd07699 IgC_L Immunoglobulin C 98.2 3.6E-06 7.8E-11 46.5 3.9 32 33-64 14-46 (100)
88 cd05876 Ig3_L1-CAM Third immun 98.1 2.2E-06 4.7E-11 44.2 2.4 24 39-63 1-24 (71)
89 cd07702 Ig2_VEGFR-1 Second imm 98.1 3.3E-06 7.1E-11 44.3 3.0 25 39-64 1-25 (72)
90 cd04977 Ig1_NCAM-1_like First 98.1 6.8E-06 1.5E-10 44.4 4.2 31 31-63 10-41 (92)
91 cd05765 Ig_3 Subgroup of the i 98.1 5.3E-06 1.1E-10 43.1 3.5 24 36-60 1-24 (81)
92 cd05855 Ig_TrkB_d5 Fifth domai 98.1 4.8E-06 1E-10 44.5 3.2 23 41-64 3-25 (79)
93 cd04974 Ig3_FGFR Third immunog 98.1 6.4E-06 1.4E-10 44.3 3.6 24 36-60 1-24 (90)
94 cd07703 Ig2_Nectin-2_like Seco 98.1 9.3E-06 2E-10 44.8 4.2 21 39-59 18-38 (95)
95 cd05719 Ig2_PVR_like Second im 98.0 7.8E-06 1.7E-10 45.0 3.6 22 38-59 17-38 (95)
96 cd05731 Ig3_L1-CAM_like Third 98.0 6.6E-06 1.4E-10 41.8 3.1 24 39-63 1-24 (71)
97 cd04971 Ig_TrKABC_d5 Fifth dom 98.0 7.1E-06 1.5E-10 43.7 3.2 23 41-64 3-25 (81)
98 KOG4221|consensus 98.0 2.1E-05 4.5E-10 58.5 6.3 61 3-64 218-279 (1381)
99 cd05764 Ig_2 Subgroup of the i 98.0 1.5E-05 3.2E-10 41.0 4.2 27 36-63 1-28 (74)
100 cd05854 Ig6_Contactin-2 Sixth 98.0 1.5E-05 3.3E-10 42.5 4.3 26 37-63 1-28 (85)
101 cd07698 IgC_MHC_I_alpha3 Class 98.0 1.8E-05 3.8E-10 42.9 4.6 27 36-62 14-41 (93)
102 KOG3515|consensus 98.0 6.1E-06 1.3E-10 58.8 3.3 49 13-63 1-49 (741)
103 cd05725 Ig3_Robo Third immunog 98.0 9.8E-06 2.1E-10 41.3 3.2 24 39-63 1-24 (69)
104 cd05866 Ig1_NCAM-2 First immun 98.0 1.7E-05 3.6E-10 43.3 4.2 31 31-63 10-41 (92)
105 cd05858 Ig3_FGFR-2 Third immun 98.0 1.7E-05 3.6E-10 42.5 4.1 23 36-59 1-23 (90)
106 cd05757 Ig2_IL1R_like Second i 98.0 9.2E-06 2E-10 44.3 3.0 33 32-64 6-42 (92)
107 cd05882 Ig1_Necl-1 First (N-te 97.9 2.1E-05 4.5E-10 43.1 4.2 31 31-62 7-37 (95)
108 cd05845 Ig2_L1-CAM_like Second 97.9 2.3E-05 4.9E-10 43.3 4.1 33 29-61 11-43 (95)
109 cd05763 Ig_1 Subgroup of the i 97.9 1.2E-05 2.6E-10 41.6 2.8 21 40-61 2-22 (75)
110 cd04970 Ig6_Contactin_like Six 97.9 2.7E-05 5.9E-10 41.2 4.3 27 37-64 1-29 (85)
111 PF00047 ig: Immunoglobulin do 97.9 2.1E-05 4.5E-10 39.2 3.6 27 36-62 1-27 (64)
112 KOG3513|consensus 97.9 4.3E-05 9.3E-10 56.2 6.1 56 3-64 318-373 (1051)
113 cd05736 Ig2_Follistatin_like S 97.9 2E-05 4.3E-10 40.8 3.2 24 40-64 2-25 (76)
114 cd05853 Ig6_Contactin-4 Sixth 97.9 4.4E-05 9.6E-10 41.2 4.4 28 37-64 1-29 (85)
115 cd05847 IgC_CH2_IgE CH2 domain 97.8 4.3E-05 9.4E-10 41.9 4.2 29 35-63 13-42 (94)
116 cd05751 Ig1_LILRB1_like First 97.8 6.5E-05 1.4E-09 40.4 4.8 38 20-62 3-40 (91)
117 PF07654 C1-set: Immunoglobuli 97.8 3.7E-05 8E-10 40.7 3.6 31 34-64 6-37 (83)
118 cd07690 Ig1_CD4 First immunogl 97.8 0.0001 2.2E-09 40.5 5.4 30 31-61 2-31 (94)
119 cd07701 Ig1_Necl-3 First (N-te 97.8 6.3E-05 1.4E-09 41.0 4.3 29 30-59 6-34 (95)
120 smart00409 IG Immunoglobulin. 97.8 0.00015 3.2E-09 36.5 5.4 32 31-63 4-36 (86)
121 smart00410 IG_like Immunoglobu 97.8 0.00015 3.2E-09 36.5 5.4 32 31-63 4-36 (86)
122 cd05742 Ig1_VEGFR_like First i 97.8 4.2E-05 9.2E-10 40.3 3.3 28 36-63 1-29 (84)
123 cd05770 IgC_beta2m Class I maj 97.7 5.5E-05 1.2E-09 41.5 3.7 32 33-64 12-44 (93)
124 cd05767 IgC_MHC_II_alpha Class 97.7 9.2E-05 2E-09 40.6 4.5 31 34-64 13-44 (94)
125 cd05898 Ig5_KIRREL3 Fifth immu 97.7 0.00023 5E-09 39.4 5.7 33 31-63 11-43 (98)
126 cd07697 IgC_TCR_gamma T cell r 97.7 7.9E-05 1.7E-09 41.1 3.6 30 35-64 15-45 (96)
127 cd07696 IgC_CH3 CH3 domain (th 97.7 0.00012 2.7E-09 40.2 4.3 30 33-62 11-42 (96)
128 cd05734 Ig7_DSCAM Seventh immu 97.6 4.6E-05 1E-09 39.7 2.3 21 39-60 1-21 (79)
129 cd05861 Ig1_PDGFR-alphabeta Fr 97.6 0.00015 3.3E-09 38.5 3.9 25 36-61 1-25 (84)
130 cd05871 Ig_Semaphorin_classIII 97.6 0.00019 4.1E-09 38.9 4.2 28 30-59 5-32 (91)
131 KOG4221|consensus 97.6 0.00021 4.6E-09 53.4 5.6 51 7-63 319-369 (1381)
132 cd05872 Ig_Sema4B_like Immunog 97.6 0.00016 3.4E-09 39.1 3.9 32 31-64 6-37 (85)
133 cd05899 IgV_TCR_beta Immunoglo 97.5 0.00029 6.3E-09 38.8 4.6 29 30-60 7-35 (110)
134 cd05711 Ig_FcalphaRI Immunoglo 97.5 0.0005 1.1E-08 37.3 5.2 38 20-62 2-39 (94)
135 KOG4194|consensus 97.4 0.00021 4.6E-09 50.9 4.2 56 3-63 693-748 (873)
136 cd04985 IgC_CH1 CH1 domain (fi 97.4 0.00032 7E-09 38.4 4.0 28 35-62 15-43 (95)
137 cd04983 IgV_TCR_alpha_like Imm 97.4 0.00063 1.4E-08 37.1 4.7 30 30-60 7-36 (109)
138 KOG4194|consensus 97.4 0.00041 8.9E-09 49.4 4.7 54 2-61 598-651 (873)
139 cd04980 IgV_L_kappa Immunoglob 97.4 0.00065 1.4E-08 37.2 4.7 30 30-59 9-38 (106)
140 cd05717 Ig1_Necl-1-3_like Firs 97.3 0.00068 1.5E-08 36.4 4.6 28 30-58 6-33 (95)
141 PHA03270 envelope glycoprotein 97.2 0.0008 1.7E-08 45.9 4.9 53 4-63 209-263 (466)
142 cd04982 IgV_TCR_gamma Immunogl 97.2 0.0014 3E-08 36.3 5.0 30 30-59 7-37 (116)
143 cd07700 IgV_CD8_beta Immunoglo 97.2 0.001 2.2E-08 36.7 4.1 29 32-60 2-30 (107)
144 PF13927 Ig_3: Immunoglobulin 97.1 0.00092 2E-08 33.3 3.7 19 39-57 18-36 (75)
145 cd05897 Ig2_IL1R2_like Second 97.0 0.00052 1.1E-08 37.8 2.2 33 32-64 6-42 (95)
146 cd07706 IgV_TCR_delta Immunogl 97.0 0.0024 5.1E-08 35.5 4.8 30 30-59 8-37 (116)
147 cd00099 IgV Immunoglobulin var 97.0 0.0016 3.6E-08 35.0 3.9 29 32-60 2-30 (105)
148 cd05860 Ig4_SCFR Fourth immuno 97.0 0.0022 4.8E-08 35.9 4.3 34 29-63 11-45 (101)
149 PHA03269 envelope glycoprotein 96.9 0.0023 5E-08 44.4 4.9 51 7-64 320-372 (566)
150 cd04984 IgV_L_lambda Immunoglo 96.9 0.0016 3.4E-08 35.2 3.4 29 32-60 2-31 (98)
151 PHA03271 envelope glycoprotein 96.9 0.0031 6.7E-08 43.1 5.3 50 9-64 239-290 (490)
152 KOG3513|consensus 96.9 0.003 6.4E-08 47.0 5.5 54 3-61 220-280 (1051)
153 PHA03273 envelope glycoprotein 96.9 0.0032 6.9E-08 43.3 5.2 49 9-64 230-280 (486)
154 cd04986 IgC_CH2 CH2 domain (se 96.8 0.0023 5.1E-08 35.5 3.7 29 34-62 17-47 (99)
155 cd07692 Ig_CD3_epsilon Immunog 96.8 0.00091 2E-08 34.7 1.8 28 34-65 5-32 (65)
156 cd07694 Ig2_CD4 Second immunog 96.7 0.0028 6.2E-08 34.7 3.5 30 32-61 10-40 (88)
157 cd05716 Ig_pIgR Immunoglobulin 96.6 0.0049 1.1E-07 33.1 3.9 30 31-60 2-31 (98)
158 cd05896 Ig1_IL1RAPL-1_like Fir 96.5 0.0045 9.7E-08 34.8 3.5 32 30-61 9-50 (104)
159 cd05881 Ig1_Necl-2 First (N-te 96.5 0.0084 1.8E-07 32.9 4.5 30 31-61 7-36 (95)
160 KOG3515|consensus 96.5 0.002 4.3E-08 46.4 2.3 47 15-63 202-248 (741)
161 cd00096 Ig Immunoglobulin doma 96.4 0.0073 1.6E-07 28.4 3.6 24 39-63 1-24 (74)
162 PHA02785 IL-beta-binding prote 96.4 0.0035 7.5E-08 40.9 2.8 30 32-61 37-70 (326)
163 cd05890 Ig2_Nectin-1_like Seco 96.4 0.0052 1.1E-07 34.2 3.1 19 40-58 24-42 (98)
164 cd05715 Ig_P0-like Immunoglobu 96.3 0.014 2.9E-07 32.5 4.8 30 30-59 7-39 (116)
165 PF06832 BiPBP_C: Penicillin-B 96.2 0.05 1.1E-06 29.1 6.5 45 10-63 10-54 (89)
166 PHA02987 Ig domain OX-2-like p 96.2 0.013 2.8E-07 36.1 4.5 32 30-61 24-55 (189)
167 cd05741 Ig_CEACAM_D1_like Firs 96.2 0.0062 1.3E-07 32.1 2.8 25 36-61 1-25 (92)
168 cd05862 Ig1_VEGFR First immuno 96.2 0.012 2.5E-07 31.3 3.8 27 36-62 1-28 (86)
169 cd04981 IgV_H Immunoglobulin ( 96.1 0.021 4.5E-07 32.1 4.6 29 31-59 7-36 (117)
170 PF07686 V-set: Immunoglobulin 96.0 0.022 4.7E-07 30.4 4.4 30 30-59 10-39 (114)
171 cd05720 Ig_CD8_alpha Immunoglo 96.0 0.015 3.2E-07 32.0 3.7 28 32-60 2-29 (104)
172 cd05880 Ig_EVA1 Immunoglobulin 95.9 0.028 6.1E-07 31.4 4.8 29 30-58 7-38 (115)
173 KOG4222|consensus 95.9 0.016 3.6E-07 43.6 4.6 56 1-62 300-355 (1281)
174 cd05877 Ig_LP_like Immunoglobu 95.9 0.019 4.1E-07 31.2 3.8 26 35-60 1-31 (106)
175 cd05774 Ig_CEACAM_D1 First imm 95.9 0.022 4.8E-07 31.7 4.1 27 32-59 9-35 (105)
176 PHA02826 IL-1 receptor-like pr 95.8 0.02 4.2E-07 35.9 4.0 33 30-62 31-73 (227)
177 cd05775 Ig_SLAM-CD84_like_N N- 95.5 0.014 3E-07 31.7 2.2 27 35-61 3-29 (97)
178 cd05712 Ig_Siglec_N Immunoglob 95.0 0.1 2.2E-06 29.1 5.0 32 29-60 7-43 (119)
179 cd05718 Ig1_PVR_like First imm 94.8 0.039 8.5E-07 29.3 2.8 24 37-60 1-26 (98)
180 cd05846 Ig1_MRC-OX-2_like Firs 94.7 0.059 1.3E-06 29.0 3.4 24 36-59 1-24 (97)
181 KOG4222|consensus 94.3 0.047 1E-06 41.3 3.0 56 5-64 119-174 (1281)
182 cd05714 Ig_CSPGs_LP Immunoglob 94.3 0.11 2.3E-06 28.2 3.8 24 36-59 2-30 (106)
183 cd07691 Ig_CD3_gamma_delta Imm 94.1 0.055 1.2E-06 28.4 2.3 19 37-60 7-25 (69)
184 cd05900 Ig_Aggrecan Immunoglob 94.1 0.11 2.4E-06 29.2 3.7 24 36-59 2-36 (112)
185 cd05878 Ig_Aggrecan_like Immun 94.1 0.12 2.5E-06 28.7 3.7 24 36-59 2-34 (110)
186 cd05713 Ig_MOG_like Immunoglob 93.8 0.17 3.6E-06 27.0 4.0 25 36-60 1-27 (100)
187 cd05879 Ig_P0 Immunoglobulin ( 93.6 0.28 6.1E-06 27.7 4.7 26 31-56 8-36 (116)
188 cd05721 IgV_CTLA-4 Immunoglobu 93.0 0.36 7.9E-06 27.6 4.6 29 31-59 8-38 (115)
189 PF06328 Lep_receptor_Ig: Ig-l 92.4 0.68 1.5E-05 25.1 5.0 33 32-64 14-50 (89)
190 PHA03052 Hypothetical protein; 91.9 0.81 1.8E-05 24.0 4.6 33 31-63 7-41 (69)
191 smart00406 IGv Immunoglobulin 91.8 0.37 8E-06 24.1 3.4 23 38-60 1-24 (81)
192 PHA02865 MHC-like TNF binding 91.2 0.23 5E-06 33.2 2.7 22 38-59 216-238 (338)
193 PF09085 Adhes-Ig_like: Adhesi 90.6 0.33 7.1E-06 27.3 2.5 34 32-65 12-49 (110)
194 PF11049 KSHV_K1: Glycoprotein 89.7 0.19 4.1E-06 26.3 1.1 21 40-63 2-22 (71)
195 cd05889 Ig1_DNAM-1_like First 88.1 0.93 2E-05 24.8 3.2 23 37-59 1-23 (96)
196 cd05887 Ig1_Nectin-3_like Firs 86.5 1.3 2.9E-05 24.2 3.2 23 37-59 1-23 (96)
197 PHA03112 IL-18 binding protein 85.2 2 4.2E-05 25.5 3.6 30 31-60 33-63 (141)
198 KOG1480|consensus 83.8 0.29 6.4E-06 36.0 -0.3 32 32-63 140-171 (909)
199 PF02440 Adeno_E3_CR1: Adenovi 83.1 1.9 4.1E-05 22.1 2.7 20 33-57 2-21 (63)
200 cd05888 Ig1_Nectin-4_like Frst 83.0 3.1 6.7E-05 22.4 3.7 22 38-59 2-25 (100)
201 cd05902 Ig_Neurocan Immunoglob 80.1 4.4 9.5E-05 22.6 3.7 24 36-59 2-31 (110)
202 PF04668 Tsg: Twisted gastrula 80.0 0.47 1E-05 27.8 -0.3 11 50-60 98-108 (132)
203 PHA03376 BARF1; Provisional 78.6 3.2 6.9E-05 26.2 3.0 29 31-59 21-51 (221)
204 PHA03376 BARF1; Provisional 77.5 2.4 5.2E-05 26.7 2.3 24 36-60 139-162 (221)
205 PF08204 V-set_CD47: CD47 immu 73.8 4.3 9.4E-05 23.7 2.6 30 34-63 25-58 (130)
206 cd05901 Ig_Versican Immunoglob 66.3 14 0.00031 21.0 3.6 24 36-59 2-35 (117)
207 PF08239 SH3_3: Bacterial SH3 55.9 21 0.00046 16.6 5.3 36 11-58 3-38 (55)
208 cd05886 Ig1_Nectin-1_like Firs 55.6 28 0.0006 18.9 3.5 22 38-59 2-26 (99)
209 PHA02982 hypothetical protein; 50.3 14 0.0003 23.7 1.9 29 32-60 35-63 (251)
210 TIGR02073 PBP_1c penicillin-bi 45.3 1.1E+02 0.0024 22.5 6.0 25 37-63 665-689 (727)
211 PF02124 Marek_A: Marek's dise 40.7 90 0.0019 19.7 4.4 47 3-62 69-116 (211)
212 PF03921 ICAM_N: Intercellular 37.9 61 0.0013 17.7 3.0 25 31-56 13-37 (91)
213 PRK14051 negative regulator Gr 37.8 50 0.0011 18.9 2.7 16 33-48 80-95 (123)
214 KOG1026|consensus 34.6 38 0.00083 25.4 2.3 31 32-63 203-233 (774)
215 PHA03298 envelope glycoprotein 34.6 29 0.00064 20.6 1.5 13 50-62 94-106 (167)
216 PHA00008 J DNA packaging prote 34.2 36 0.00078 14.3 1.3 15 49-63 11-25 (26)
217 PF07467 BLIP: Beta-lactamase 33.3 1.1E+02 0.0024 19.0 3.8 30 33-62 145-175 (183)
218 COG3822 ABC-type sugar transpo 31.4 1E+02 0.0022 19.5 3.5 25 28-60 152-176 (225)
219 PF00801 PKD: PKD domain; Int 30.3 70 0.0015 15.6 2.3 28 32-60 7-34 (69)
220 COG4953 PbpC Membrane carboxyp 30.2 1.5E+02 0.0032 22.3 4.6 24 39-64 672-695 (733)
221 PRK11240 penicillin-binding pr 28.5 2.6E+02 0.0056 21.0 6.0 24 38-63 713-736 (772)
222 TIGR03000 plancto_dom_1 Planct 26.8 1.1E+02 0.0024 16.2 2.8 31 9-42 44-74 (75)
223 PF14041 Lipoprotein_21: LppP/ 26.7 1.1E+02 0.0024 16.2 3.7 13 50-62 24-36 (89)
224 cd02175 GH16_lichenase lichena 26.3 71 0.0015 19.4 2.3 13 51-63 149-161 (212)
225 TIGR02934 nifT_nitrog probable 25.8 1.1E+02 0.0024 15.9 3.0 20 1-21 4-23 (67)
226 COG4118 Phd Antitoxin of toxin 25.5 43 0.00093 18.0 1.1 21 32-55 20-40 (84)
227 PF10430 Ig_Tie2_1: Tie-2 Ig-l 25.1 1.3E+02 0.0028 16.7 2.9 26 33-58 12-37 (96)
228 PHA03042 CD47-like protein; Pr 24.7 1.2E+02 0.0026 20.1 3.1 28 34-63 29-62 (286)
229 PF12158 DUF3592: Protein of u 24.6 62 0.0013 18.0 1.7 16 7-22 94-109 (148)
230 PF09186 DUF1949: Domain of un 24.1 75 0.0016 14.6 1.7 16 4-19 26-41 (56)
231 PRK13244 protease inhibitor pr 23.7 1.1E+02 0.0023 18.3 2.5 10 38-47 61-70 (145)
232 PF15531 Toxin_51: Putative to 23.1 52 0.0011 19.2 1.1 15 48-62 113-127 (128)
233 cd00146 PKD polycystic kidney 23.0 1.1E+02 0.0025 15.1 3.6 25 36-60 14-38 (81)
234 PF00722 Glyco_hydro_16: Glyco 22.9 95 0.0021 18.0 2.3 13 51-63 129-141 (185)
235 PF01200 Ribosomal_S28e: Ribos 22.8 1E+02 0.0022 16.1 2.1 10 32-41 49-58 (69)
236 cd08023 GH16_laminarinase_like 22.7 92 0.002 19.0 2.3 13 51-63 169-181 (235)
237 PF10856 DUF2678: Protein of u 22.4 34 0.00074 19.7 0.3 9 53-61 78-86 (118)
238 COG2132 SufI Putative multicop 22.2 2E+02 0.0043 19.7 4.0 28 28-57 63-91 (451)
239 cd00413 Glyco_hydrolase_16 gly 22.1 96 0.0021 18.4 2.3 12 52-63 154-165 (210)
240 PF03712 Cu2_monoox_C: Copper 22.1 1.6E+02 0.0035 17.2 3.1 19 30-48 86-104 (156)
241 cd02183 GH16_fungal_CRH1_trans 21.3 1E+02 0.0022 19.0 2.2 13 51-63 126-138 (203)
242 PF11515 Cul7: Mouse developme 21.2 1.1E+02 0.0024 16.4 2.1 31 32-62 32-64 (78)
243 PF01681 C6: C6 domain; Inter 20.7 1.5E+02 0.0033 15.6 2.9 20 38-64 68-88 (92)
244 cd04457 S1_S28E S1_S28E: S28E, 20.5 1.4E+02 0.0031 15.2 3.7 10 32-41 40-49 (60)
245 PRK10380 hypothetical protein; 20.4 1.4E+02 0.003 15.2 2.2 13 46-58 17-29 (63)
No 1
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=99.21 E-value=2.5e-11 Score=65.31 Aligned_cols=28 Identities=50% Similarity=0.903 Sum_probs=25.7
Q ss_pred cEEEEEEecCCCCCceEEEEECCEEccC
Q psy7728 38 EITLECLVKNAKPAAKIVWYRGNTELKL 65 (65)
Q Consensus 38 ~~~L~C~~~~~~P~~~i~W~~~~~~l~~ 65 (65)
.++|+|.+.+|+|+|.|+||||+++|.+
T Consensus 1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~ 28 (80)
T cd05885 1 EVELTCLSPRSKPAATLRWYRDRKELKG 28 (80)
T ss_pred CEEEEEeCCCccCCCeEEEEECCEECCC
Confidence 3689999999999999999999999864
No 2
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=99.14 E-value=1.7e-10 Score=64.39 Aligned_cols=33 Identities=30% Similarity=0.447 Sum_probs=30.5
Q ss_pred EeecCCcEEEEEEecCCCCCce--EEEEECCEEcc
Q psy7728 32 EIRENQEITLECLVKNAKPAAK--IVWYRGNTELK 64 (65)
Q Consensus 32 ~~~~G~~~~L~C~~~~~~P~~~--i~W~~~~~~l~ 64 (65)
.+.+|+.++|+|++.+++|++. |+|||+++++.
T Consensus 12 ~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~ 46 (100)
T cd05755 12 WQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLS 46 (100)
T ss_pred cccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcc
Confidence 5789999999999999999998 69999999875
No 3
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=99.14 E-value=9.9e-11 Score=63.26 Aligned_cols=28 Identities=50% Similarity=0.899 Sum_probs=25.7
Q ss_pred cEEEEEEecCCCCCceEEEEECCEEccC
Q psy7728 38 EITLECLVKNAKPAAKIVWYRGNTELKL 65 (65)
Q Consensus 38 ~~~L~C~~~~~~P~~~i~W~~~~~~l~~ 65 (65)
.++|+|.+.+++|+|.|+||||++++.|
T Consensus 1 ~~~L~C~s~gSkP~A~I~W~k~~~~l~~ 28 (82)
T cd05883 1 EIELNCTAMASKPAATIRWFKGNKELTG 28 (82)
T ss_pred CEEEEEEecCCCCCCEEEEEECCEECcC
Confidence 3689999999999999999999999865
No 4
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=99.10 E-value=1.9e-10 Score=65.01 Aligned_cols=49 Identities=20% Similarity=0.396 Sum_probs=41.0
Q ss_pred EEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728 12 YQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPA-AKIVWYRGNTELK 64 (65)
Q Consensus 12 ~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~ 64 (65)
.|+++|+.|.|.+... ....|+.++|.|.+.+++|+ ..|+|+|||+++.
T Consensus 1 ~v~~~P~~p~i~~~~~----~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~ 50 (111)
T cd05772 1 SVRAKPSVPVVSGPSG----RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELS 50 (111)
T ss_pred CcccCCCCcEeCCchh----ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECc
Confidence 3789999998876443 45678899999999999996 7999999999874
No 5
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=98.88 E-value=5.9e-09 Score=57.86 Aligned_cols=36 Identities=22% Similarity=0.355 Sum_probs=31.5
Q ss_pred CeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728 29 SKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
..+.+.+|+.++|.|.+.+..|+|.++|||||+++.
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~ 46 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLT 46 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCC
Confidence 346889999999999996658999999999999875
No 6
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.85 E-value=6.5e-09 Score=55.89 Aligned_cols=27 Identities=37% Similarity=0.812 Sum_probs=24.6
Q ss_pred EEEEEEecCCCCCceEEEEECCEEccC
Q psy7728 39 ITLECLVKNAKPAAKIVWYRGNTELKL 65 (65)
Q Consensus 39 ~~L~C~~~~~~P~~~i~W~~~~~~l~~ 65 (65)
++|+|.+.+++|+++|+|||||+++.+
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~ 28 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKD 28 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcC
Confidence 689999999999999999999998753
No 7
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.85 E-value=7e-09 Score=55.26 Aligned_cols=27 Identities=44% Similarity=0.897 Sum_probs=24.6
Q ss_pred EEEEEEecCCCCCceEEEEECCEEccC
Q psy7728 39 ITLECLVKNAKPAAKIVWYRGNTELKL 65 (65)
Q Consensus 39 ~~L~C~~~~~~P~~~i~W~~~~~~l~~ 65 (65)
++|+|.+.+++|+++|+|||||+++.+
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~ 28 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKG 28 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccC
Confidence 689999999999999999999998753
No 8
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.84 E-value=7.6e-09 Score=55.49 Aligned_cols=27 Identities=41% Similarity=0.759 Sum_probs=24.6
Q ss_pred EEEEEEecCCCCCceEEEEECCEEccC
Q psy7728 39 ITLECLVKNAKPAAKIVWYRGNTELKL 65 (65)
Q Consensus 39 ~~L~C~~~~~~P~~~i~W~~~~~~l~~ 65 (65)
++|+|.+.+++|+++|+|||||+++.+
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~ 28 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEG 28 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCC
Confidence 689999999999999999999998753
No 9
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=98.79 E-value=1.9e-08 Score=53.81 Aligned_cols=33 Identities=24% Similarity=0.691 Sum_probs=28.8
Q ss_pred EEeecCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728 31 IEIRENQEITLECLVKNAKPAA-KIVWYRGNTELK 64 (65)
Q Consensus 31 ~~~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~ 64 (65)
+.+.+|+.+.|+|.+. |+|.| +|+|+|||+++.
T Consensus 8 ~~v~~G~~v~l~C~a~-G~P~P~~I~W~k~g~~l~ 41 (81)
T cd05749 8 LSVTANTPFNLTCQAV-GPPEPVEILWWQGGSPLG 41 (81)
T ss_pred eEEcCCCCEEEEEEee-eecCCeEEEEEECCEECC
Confidence 5788999999999985 57888 799999999874
No 10
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=98.79 E-value=2.1e-08 Score=54.16 Aligned_cols=34 Identities=24% Similarity=0.603 Sum_probs=29.6
Q ss_pred eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728 30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
.+.+.+|+.++|.|.+. |.|.|.|.|||+|+++.
T Consensus 10 ~v~v~~G~~v~L~C~v~-G~P~p~v~W~k~g~~l~ 43 (92)
T cd05737 10 VVTIMEGKTLNLTCTVF-GDPDPEVSWLKNDQALA 43 (92)
T ss_pred eEEEeCCCcEEEEEEEE-ecCCCeEEEEECCEECc
Confidence 45789999999999985 57999999999998763
No 11
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=98.78 E-value=2.8e-08 Score=52.43 Aligned_cols=34 Identities=18% Similarity=0.462 Sum_probs=29.7
Q ss_pred EEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728 31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
+.+.+|+++.|.|.+..+.|.+.|.|||+|+.+.
T Consensus 6 ~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~ 39 (86)
T cd05724 6 TQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLN 39 (86)
T ss_pred EEEeCCCCEEEEEECCCCCCCCEEEEEECCEECC
Confidence 4678999999999986678999999999998763
No 12
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=98.77 E-value=2.6e-08 Score=53.39 Aligned_cols=34 Identities=21% Similarity=0.584 Sum_probs=29.6
Q ss_pred eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728 30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
.+.+.+|+.++|+|.+. |+|.+.|+|||+|+.+.
T Consensus 10 ~~~v~~G~~~~l~C~~~-g~P~p~i~W~k~g~~l~ 43 (100)
T cd07693 10 DLIVSKGDPATLNCKAE-GRPTPTIQWLKNGQPLE 43 (100)
T ss_pred eeEEcCCCeEEEEeeCC-cCCCCEEEEEECCEECc
Confidence 45788999999999985 57999999999998864
No 13
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.76 E-value=7.1e-08 Score=55.53 Aligned_cols=53 Identities=17% Similarity=0.224 Sum_probs=39.1
Q ss_pred cCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCC-ceEEEEECCEE
Q psy7728 5 YGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPA-AKIVWYRGNTE 62 (65)
Q Consensus 5 ~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~-~~i~W~~~~~~ 62 (65)
....++|+|..+|.. .+.... ....+|+.++|+|.+.+.+|+ ++|+|+|+|..
T Consensus 27 ~~~~~~l~v~~~P~v-~~~~~~----~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~ 80 (139)
T cd05771 27 AQQIIQLSVSEPPRV-RLSLEK----LVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG 80 (139)
T ss_pred eeeEEEEEEecCCce-EEeCCC----ceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence 445688999998854 333221 234478999999999988886 69999999853
No 14
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.75 E-value=2.2e-08 Score=52.91 Aligned_cols=26 Identities=42% Similarity=0.891 Sum_probs=23.7
Q ss_pred EEEEEEecCCCCCceEEEEECCEEcc
Q psy7728 39 ITLECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 39 ~~L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
+.|+|.+.+++|.+.|+|||+|+++.
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~ 27 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLD 27 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEcc
Confidence 68999999989999999999999764
No 15
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.73 E-value=1.9e-08 Score=52.27 Aligned_cols=29 Identities=28% Similarity=0.656 Sum_probs=25.5
Q ss_pred cCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728 35 ENQEITLECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 35 ~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
+|+.+.|.|.+. |+|.|.|+|||+|..+.
T Consensus 1 eG~~v~l~C~~~-g~P~p~i~W~k~g~~~~ 29 (74)
T cd05745 1 EGQTVDFLCEAQ-GYPQPVIAWTKGGSQLS 29 (74)
T ss_pred CCCeEEEEeECC-EecCCEEEEEECCEECC
Confidence 689999999984 58999999999998763
No 16
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=98.73 E-value=3.7e-08 Score=51.99 Aligned_cols=32 Identities=16% Similarity=0.562 Sum_probs=28.1
Q ss_pred EeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728 32 EIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 32 ~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
.+.+|+.++|.|.+.+ .|++.|+|||+|+++.
T Consensus 5 ~v~~G~~~~L~C~~~g-~P~p~i~W~k~g~~l~ 36 (85)
T cd05857 5 AVPAANTVKFRCPAAG-NPTPTMRWLKNGKEFK 36 (85)
T ss_pred EcCCCCEEEEEEEcCC-CCCCEEEEEECCEECC
Confidence 5788999999999954 6999999999998864
No 17
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=98.71 E-value=1.9e-08 Score=53.73 Aligned_cols=28 Identities=29% Similarity=0.675 Sum_probs=24.8
Q ss_pred CCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728 36 NQEITLECLVKNAKPAAKIVWYRGNTEL 63 (65)
Q Consensus 36 G~~~~L~C~~~~~~P~~~i~W~~~~~~l 63 (65)
|+.++|+|.+.+++|+|.|+|+.++..+
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~ 41 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPV 41 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEE
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCce
Confidence 6799999999999999999999998765
No 18
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=98.71 E-value=6.3e-08 Score=52.59 Aligned_cols=42 Identities=26% Similarity=0.350 Sum_probs=32.6
Q ss_pred cEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728 20 IEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63 (65)
Q Consensus 20 ~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l 63 (65)
|.|.....+..+.+.+|+.++|.|.+.+ . .+.|.||||+..+
T Consensus 2 p~~~~~~~~~~~~v~~g~~v~l~C~a~g-~-~p~i~W~kng~~l 43 (91)
T cd05740 2 PVINSNNSVGNQPPEDNQPVTLTCEAEG-Q-ATYIWWVNNGSLL 43 (91)
T ss_pred CEeecccccCccccccCCcEEEEEEeCC-C-CCEEEEEECCEEC
Confidence 3444334444568999999999999965 5 8999999999875
No 19
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.71 E-value=5.1e-08 Score=51.73 Aligned_cols=32 Identities=25% Similarity=0.450 Sum_probs=26.5
Q ss_pred EeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728 32 EIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63 (65)
Q Consensus 32 ~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l 63 (65)
.+.+|+.++|+|.+.+..+...+.|||||+.+
T Consensus 11 ~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l 42 (78)
T cd05752 11 TIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLL 42 (78)
T ss_pred EeeCCCCEEEEEeCCCCCCCccEEEEECCEEe
Confidence 67899999999999664234579999999986
No 20
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=98.70 E-value=6e-08 Score=52.36 Aligned_cols=34 Identities=18% Similarity=0.434 Sum_probs=29.5
Q ss_pred eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728 30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
.+.+..|+.++|.|.+. |.|.+.++|+|+|+.+.
T Consensus 12 ~~~~~~G~~v~L~C~~~-g~P~p~v~W~k~g~~~~ 45 (95)
T cd05730 12 NATANLGQSVTLACDAD-GFPEPTMTWTKDGEPIE 45 (95)
T ss_pred ceEEeCCCCEEEEEecc-EeCCCEEEEEECCEECc
Confidence 45789999999999985 58999999999998764
No 21
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=98.67 E-value=4.8e-08 Score=50.58 Aligned_cols=28 Identities=25% Similarity=0.675 Sum_probs=24.4
Q ss_pred CCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728 36 NQEITLECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 36 G~~~~L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
|+.++|.|.+. |+|.|.|+|+|+|+++.
T Consensus 1 G~~v~L~C~a~-G~P~P~v~W~k~g~~l~ 28 (69)
T cd05739 1 GGSVNLTCVAV-GAPMPYVKWMKGGEELT 28 (69)
T ss_pred CCeEEEEEEee-ecCCCEEEEEECCEECC
Confidence 67899999996 57999999999998763
No 22
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.67 E-value=4.4e-08 Score=51.13 Aligned_cols=28 Identities=21% Similarity=0.580 Sum_probs=24.4
Q ss_pred CCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728 36 NQEITLECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 36 G~~~~L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
|+.++|.|.+. |.|.|.|+|||||+++.
T Consensus 1 G~~v~l~C~~~-G~P~p~i~W~k~g~~i~ 28 (76)
T cd05867 1 GETARLDCQVE-GIPTPNITWSINGAPIE 28 (76)
T ss_pred CCeEEEEEEee-EeCCCeEEEEECCEECC
Confidence 68899999985 57999999999998764
No 23
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.66 E-value=6.8e-08 Score=51.97 Aligned_cols=32 Identities=25% Similarity=0.449 Sum_probs=28.0
Q ss_pred EEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728 31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63 (65)
Q Consensus 31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l 63 (65)
..+.+|+.++|.|.+. |+|.|.|+|||++.++
T Consensus 11 ~~~~~G~~v~l~C~~~-G~P~P~v~W~k~~~~~ 42 (88)
T cd05851 11 TYALKGQNVTLECFAL-GNPVPVIRWRKILEPM 42 (88)
T ss_pred EEEeCCCcEEEEEEec-ccCCCEEEEEECCcCC
Confidence 4688999999999995 5899999999998765
No 24
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=98.65 E-value=1e-07 Score=51.15 Aligned_cols=34 Identities=21% Similarity=0.579 Sum_probs=29.9
Q ss_pred eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728 30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
.+.+.+|+.+.|.|.+. |.|.|.++|+|+++++.
T Consensus 4 ~~~v~~G~~v~l~c~~~-G~P~P~v~W~k~~~~i~ 37 (86)
T cd05894 4 TIVVVAGNKLRLDVPIS-GEPAPTVTWSRGDKAFT 37 (86)
T ss_pred EEEEEcCCEEEEEeeEe-ecCCCeEEEEECCEECc
Confidence 45789999999999995 58999999999999874
No 25
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=98.64 E-value=1.2e-07 Score=51.14 Aligned_cols=34 Identities=21% Similarity=0.551 Sum_probs=29.7
Q ss_pred eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728 30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
.+.+.+|+.+.|.|.+. ++|.+.+.|||+|..+.
T Consensus 12 ~~~~~~G~~~~L~C~~~-g~P~p~v~W~k~g~~l~ 45 (92)
T cd05747 12 SLTVSEGESARFSCDVD-GEPAPTVTWMREGQIIV 45 (92)
T ss_pred cEEEeCCCcEEEEEEEe-ecCCCEEEEEECCEECC
Confidence 46789999999999985 68999999999998763
No 26
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.64 E-value=1.1e-07 Score=51.43 Aligned_cols=33 Identities=24% Similarity=0.504 Sum_probs=28.3
Q ss_pred EEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728 31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
..+.+|++++|.|.+. +.|++.|+|+|||+.+.
T Consensus 9 ~~~~~g~~v~l~C~v~-g~P~p~i~W~k~g~~l~ 41 (95)
T cd05722 9 IVAVRGGPVVLNCSAE-GEPPPKIEWKKDGVLLN 41 (95)
T ss_pred eEEcCCCCEEEeeecc-cCCCCEEEEEECCeECc
Confidence 3567899999999985 46999999999999874
No 27
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=98.63 E-value=1.1e-07 Score=52.25 Aligned_cols=34 Identities=15% Similarity=0.463 Sum_probs=30.1
Q ss_pred eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728 30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
.+.+.+|+.+.|.|.+. |.|++.++|||||++|.
T Consensus 9 ~~~v~~G~~v~l~C~~~-G~p~p~v~W~kdg~~l~ 42 (98)
T cd05762 9 DMKVRAGESVELFCKVT-GTQPITCTWMKFRKQIQ 42 (98)
T ss_pred CEEEECCCEEEEEEEEc-ccCCCceEEEECCEEec
Confidence 35789999999999995 68999999999999874
No 28
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.62 E-value=6.9e-08 Score=50.63 Aligned_cols=28 Identities=21% Similarity=0.531 Sum_probs=24.5
Q ss_pred CCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728 36 NQEITLECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 36 G~~~~L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
|+.++|.|.+. |+|.|.|+|+|||+++.
T Consensus 1 g~~~~l~C~a~-G~P~P~i~W~k~g~~i~ 28 (76)
T cd05868 1 GEDGTLICRAN-GNPKPSISWLTNGVPIE 28 (76)
T ss_pred CCCEEEEEEee-EeCCCeEEEEECCEEcc
Confidence 67899999995 47999999999999873
No 29
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=98.61 E-value=7.7e-08 Score=52.38 Aligned_cols=30 Identities=23% Similarity=0.676 Sum_probs=25.9
Q ss_pred ecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728 34 RENQEITLECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 34 ~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
.+|+.++|.|.+. |.|.|.|+|||||+++.
T Consensus 17 ~~g~~v~l~C~~~-G~P~P~i~W~k~g~~l~ 46 (94)
T cd05848 17 SDEKKVILNCEAR-GNPVPTYRWLRNGTEID 46 (94)
T ss_pred CCCCEEEEEEEee-ecCCCEEEEEECCeECc
Confidence 3578999999995 57999999999998874
No 30
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=98.59 E-value=1.5e-07 Score=50.96 Aligned_cols=34 Identities=21% Similarity=0.727 Sum_probs=29.5
Q ss_pred eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728 30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
.+.+.+|+.+.|.|.+. +.|.+.+.|||+|..+.
T Consensus 10 ~v~v~eG~~v~L~C~v~-g~P~p~i~W~k~~~~~~ 43 (92)
T cd05891 10 VVTIMEGKTLNLTCTVF-GNPDPEVIWFKNDQDIE 43 (92)
T ss_pred cEEEcCCCEEEEEEEEE-EeCCCeEEEEECCEECC
Confidence 46889999999999985 47999999999998763
No 31
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=98.59 E-value=1.5e-07 Score=50.50 Aligned_cols=31 Identities=19% Similarity=0.433 Sum_probs=27.9
Q ss_pred EeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728 32 EIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63 (65)
Q Consensus 32 ~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l 63 (65)
.+.+|+.+.|.|.+. |+|.|.|+||+||..+
T Consensus 11 ~v~~G~~v~l~C~~~-G~P~p~v~W~~~g~~~ 41 (90)
T cd04972 11 VVYEGGTATIRCTAE-GSPLPKVEWIIAGLIV 41 (90)
T ss_pred EEcCCCcEEEEEEEE-EcCCCeEEEEECCEEc
Confidence 478999999999996 5899999999999876
No 32
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.57 E-value=1.7e-07 Score=49.98 Aligned_cols=33 Identities=18% Similarity=0.419 Sum_probs=28.7
Q ss_pred EEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728 31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
..+..|+.++|.|.+. |.|.|.++|||+|+++.
T Consensus 9 ~~~~~G~~~~l~C~~~-g~p~p~v~W~k~g~~~~ 41 (85)
T cd05728 9 TEADIGSSLRWECKAS-GNPRPAYRWLKNGQPLA 41 (85)
T ss_pred cEEcCCCcEEEEEEee-EeCCCEEEEEECCEECC
Confidence 3678899999999985 57999999999999764
No 33
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.54 E-value=1.7e-07 Score=48.45 Aligned_cols=28 Identities=18% Similarity=0.462 Sum_probs=24.5
Q ss_pred CCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728 36 NQEITLECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 36 G~~~~L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
|+.++|.|.+. ++|.|.|+||++|+++.
T Consensus 1 G~~~~l~C~~~-g~P~p~i~W~~~g~~~~ 28 (76)
T cd04978 1 GETGRLDCEAE-GIPQPTITWRLNGVPIE 28 (76)
T ss_pred CCeEEEEEEce-eeCCCEEEEEECCEECC
Confidence 68899999985 58999999999998763
No 34
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=98.53 E-value=4.2e-07 Score=48.06 Aligned_cols=34 Identities=29% Similarity=0.805 Sum_probs=30.0
Q ss_pred eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728 30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
.+.+.+|+.++|.|.+.+ .|.+.+.|+++|..+.
T Consensus 9 ~~~v~~G~~~~l~c~~~~-~p~~~v~W~~~~~~l~ 42 (90)
T PF07679_consen 9 DVTVKEGESVTLECEVSG-NPPPTVTWYKNGRPLT 42 (90)
T ss_dssp EEEEETTSEEEEEEEEEE-SSSSEEEEEETTEEEE
T ss_pred CEEEeCCCEEEEEEEEEe-CCCCccccccccccee
Confidence 468899999999999975 5999999999998874
No 35
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.52 E-value=1.8e-07 Score=50.82 Aligned_cols=29 Identities=34% Similarity=0.664 Sum_probs=24.9
Q ss_pred cCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728 35 ENQEITLECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 35 ~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
.|+.++|.|.+. |+|.+.|+||+||+.+.
T Consensus 18 ~g~~v~l~C~a~-g~P~p~i~W~~~g~~l~ 46 (94)
T cd05850 18 PEEKVTLGCRAR-ASPPATYRWKMNGTEIK 46 (94)
T ss_pred CCCeEEEEeEce-eCCCCEEEEEECCEECc
Confidence 356899999995 58999999999999874
No 36
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.52 E-value=5.9e-07 Score=46.06 Aligned_cols=32 Identities=25% Similarity=0.770 Sum_probs=28.4
Q ss_pred EeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728 32 EIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 32 ~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
.+.+|+.++|+|.+. ++|...+.|++++..+.
T Consensus 10 ~v~~g~~~~l~C~~~-~~p~~~~~w~~~~~~~~ 41 (80)
T PF13895_consen 10 SVEEGDSVTLTCSVS-GNPPPQVQWYKNGSPIN 41 (80)
T ss_dssp EEETTSEEEEEEEEE-SSSSSEEEEEETTEEEE
T ss_pred EEeCCCcEEEEEEEE-cccceeeeeeeeeeeee
Confidence 689999999999997 68889999999998763
No 37
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=98.50 E-value=3.1e-07 Score=48.38 Aligned_cols=32 Identities=16% Similarity=0.448 Sum_probs=26.9
Q ss_pred EEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728 31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
..+.+|+.++|+|.+.+ . .+.|.|||||+++.
T Consensus 4 ~~~~~G~~v~l~C~~~~-~-~~~v~W~k~g~~l~ 35 (79)
T cd04973 4 YSAHPGDLLQLRCRLRD-D-VQSINWTKDGVQLG 35 (79)
T ss_pred EEecCCCCEEEEEEecC-C-CceEEEeeCCcCCC
Confidence 46889999999999976 3 56899999998764
No 38
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=98.49 E-value=1.5e-07 Score=48.79 Aligned_cols=25 Identities=24% Similarity=0.563 Sum_probs=21.8
Q ss_pred EEEEEEecCCCCCceEEEEECCEEcc
Q psy7728 39 ITLECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 39 ~~L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
++|.|.+. |.|+|.++|||||+++.
T Consensus 1 ~~l~c~v~-g~P~P~v~W~kdg~~l~ 25 (67)
T cd05863 1 VKLPVKVA-AYPPPEFQWYKDGKLIS 25 (67)
T ss_pred CEEEEEEE-EeCCCEEEEEECCEECc
Confidence 47999995 58999999999999874
No 39
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=98.49 E-value=3.4e-07 Score=50.70 Aligned_cols=33 Identities=18% Similarity=0.229 Sum_probs=28.7
Q ss_pred EEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728 31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
..+..|+.++|.|.+.+ .|+|.++|||||++|.
T Consensus 13 ~~~~~~~~~~l~~~v~g-~P~P~v~W~kdg~~l~ 45 (101)
T cd05859 13 EFANLHEVKEFVVEVEA-YPPPQIRWLKDNRTLI 45 (101)
T ss_pred EEEecCCcEEEEEEEEE-eCCCceEEEECCEECc
Confidence 36788899999999954 7999999999999874
No 40
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=98.49 E-value=3.7e-07 Score=49.09 Aligned_cols=32 Identities=28% Similarity=0.560 Sum_probs=27.3
Q ss_pred EEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728 31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63 (65)
Q Consensus 31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l 63 (65)
..+.+|+.++|.|.+. +.|.+.++|||++..+
T Consensus 11 ~~~~~g~~v~l~C~~~-g~p~p~v~W~~~~~~~ 42 (96)
T cd05732 11 QTAVELEQITLTCEAE-GDPIPEITWRRATRNF 42 (96)
T ss_pred eeEecCCcEEEEEEEe-EcCCCcEEEEECCccc
Confidence 4688999999999995 5799999999998544
No 41
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=98.46 E-value=7.6e-07 Score=48.39 Aligned_cols=30 Identities=23% Similarity=0.584 Sum_probs=25.4
Q ss_pred eecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728 33 IRENQEITLECLVKNAKPAAKIVWYRGNTEL 63 (65)
Q Consensus 33 ~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l 63 (65)
...|+.++|.|.+. |.|.|.|+||++++.+
T Consensus 14 ~~~g~~v~l~C~~~-G~P~P~v~W~~~~~~~ 43 (97)
T cd05869 14 MELEEQITLTCEAS-GDPIPSITWRTSTRNI 43 (97)
T ss_pred EEcCCCEEEEEEee-EeCCCEEEEEECCccc
Confidence 44589999999996 5799999999998765
No 42
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=98.45 E-value=2.4e-07 Score=47.66 Aligned_cols=26 Identities=23% Similarity=0.721 Sum_probs=22.6
Q ss_pred EEEEEEecCCCCCceEEEEECCEEcc
Q psy7728 39 ITLECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 39 ~~L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
+.|.|.+.++.|.+.++|||+|+++.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~ 26 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELN 26 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeecc
Confidence 47999998768999999999998764
No 43
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=98.45 E-value=3e-07 Score=47.77 Aligned_cols=32 Identities=25% Similarity=0.612 Sum_probs=27.1
Q ss_pred EEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728 31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63 (65)
Q Consensus 31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l 63 (65)
+....|+.++|.|.+. +.|.+.++|||++..+
T Consensus 4 ~~~~~G~~v~L~C~~~-g~p~p~i~W~k~~~~~ 35 (82)
T cd05856 4 IARPVGSSVRLKCVAS-GNPRPDITWLKDNKPL 35 (82)
T ss_pred eeccCCCeEEEEEEee-EeCCCcEEEEECCcCC
Confidence 4567799999999985 4799999999998765
No 44
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.43 E-value=5e-07 Score=48.15 Aligned_cols=32 Identities=25% Similarity=0.549 Sum_probs=27.3
Q ss_pred EEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728 31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63 (65)
Q Consensus 31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l 63 (65)
..+.+|+.++|.|.+. ++|.+.++|+|++..+
T Consensus 11 ~~~~~g~~v~l~C~~~-g~P~p~v~W~k~~~~~ 42 (88)
T cd04968 11 TYALKGQNVTLECFAL-GNPVPQIKWRKVDGSM 42 (88)
T ss_pred eEEeCCCcEEEEEEee-EeCCCEEEEEECCCcC
Confidence 4678999999999985 5799999999987654
No 45
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.42 E-value=7.9e-07 Score=47.10 Aligned_cols=33 Identities=30% Similarity=0.600 Sum_probs=28.3
Q ss_pred EEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728 31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63 (65)
Q Consensus 31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l 63 (65)
+.+.+|+.++|.|.+.++.|.+.|.|++++..+
T Consensus 11 ~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~ 43 (85)
T cd05754 11 QEVRPGADVSFICRAKSKSPAYTLVWTRVGGGL 43 (85)
T ss_pred eEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcC
Confidence 467889999999999776799999999998654
No 46
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=98.41 E-value=3.7e-07 Score=48.07 Aligned_cols=25 Identities=40% Similarity=0.825 Sum_probs=21.6
Q ss_pred EEEEEEecCCCCCceEEEEECCEEcc
Q psy7728 39 ITLECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 39 ~~L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
+.|.|.+. |.|.|.|+|||||+.+.
T Consensus 1 v~l~C~v~-G~P~P~i~W~k~~~~i~ 25 (75)
T cd05892 1 VKLECQIS-AIPPPKIFWKRNNEMVQ 25 (75)
T ss_pred CEEEEEEE-ecCCCeEEEEECCEECc
Confidence 47999995 57999999999999874
No 47
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=98.41 E-value=1.2e-06 Score=47.58 Aligned_cols=33 Identities=21% Similarity=0.398 Sum_probs=27.9
Q ss_pred eEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728 30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
...+..|+++.|.|.+. + |.+.|+|++||+++.
T Consensus 5 ~~~v~~G~~v~L~C~~~-~-~~~~i~W~~ng~~i~ 37 (87)
T cd05873 5 QRTFKLGNNAELKCSPK-S-NLARVVWKFDGKVLT 37 (87)
T ss_pred eEEEECCCCEEEEEECC-C-CCCeEEEEECCEECC
Confidence 35789999999999974 3 678999999999874
No 48
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.40 E-value=1.4e-06 Score=47.37 Aligned_cols=28 Identities=32% Similarity=0.583 Sum_probs=24.9
Q ss_pred EEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728 31 IEIRENQEITLECLVKNAKPAAKIVWYRG 59 (65)
Q Consensus 31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~ 59 (65)
..+.+|+.++|.|.+. |.|.|.|+|||+
T Consensus 11 ~~~~~G~~v~l~C~~~-G~P~p~i~W~k~ 38 (98)
T cd05870 11 ETTVENGAATLSCKAE-GEPIPEITWKRA 38 (98)
T ss_pred EEEcCCCcEEEEEecc-cCCCCeEEEEEC
Confidence 5789999999999985 579999999994
No 49
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.40 E-value=6.4e-07 Score=46.28 Aligned_cols=28 Identities=32% Similarity=0.687 Sum_probs=24.2
Q ss_pred CCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728 36 NQEITLECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 36 G~~~~L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
|+.+.|.|.+. +.|.+.++|||+++.+.
T Consensus 1 G~~v~L~C~~~-g~P~p~v~W~k~~~~~~ 28 (73)
T cd04969 1 GGDVIIECKPK-AAPKPTISWSKGTELLT 28 (73)
T ss_pred CCeEEEEEeee-EcCCCEEEEEECCEEcc
Confidence 67899999985 57999999999998763
No 50
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.40 E-value=4.4e-07 Score=47.76 Aligned_cols=24 Identities=33% Similarity=0.767 Sum_probs=20.9
Q ss_pred EEEEEEecCCCCCceEEEEECCEEc
Q psy7728 39 ITLECLVKNAKPAAKIVWYRGNTEL 63 (65)
Q Consensus 39 ~~L~C~~~~~~P~~~i~W~~~~~~l 63 (65)
+.|.|.+. |+|.|+|+|||||.++
T Consensus 1 ~~l~C~a~-G~P~P~i~W~k~g~~l 24 (77)
T cd05874 1 IVIQCEAK-GKPPPSFSWTRNGTHF 24 (77)
T ss_pred CEEEeeCc-ccCCCeEEEEECCeEC
Confidence 47999995 5799999999999876
No 51
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=98.39 E-value=6.1e-07 Score=49.81 Aligned_cols=30 Identities=27% Similarity=0.564 Sum_probs=27.1
Q ss_pred eEEeecCCcEEE-EEEecCCCCCceEEEEEC
Q psy7728 30 KIEIRENQEITL-ECLVKNAKPAAKIVWYRG 59 (65)
Q Consensus 30 ~~~~~~G~~~~L-~C~~~~~~P~~~i~W~~~ 59 (65)
.+.+.+|+.+.+ +|.+.+|+|+|+|+||.+
T Consensus 10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~ 40 (97)
T cd07704 10 SLLIDGGNGTTLAACCAAEGRPAADVTWETN 40 (97)
T ss_pred eeEeecCcceeEEEEEccCCccCCEeEEeCC
Confidence 456788999999 999999999999999987
No 52
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.39 E-value=5.6e-07 Score=47.04 Aligned_cols=27 Identities=33% Similarity=0.684 Sum_probs=23.7
Q ss_pred CCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728 36 NQEITLECLVKNAKPAAKIVWYRGNTEL 63 (65)
Q Consensus 36 G~~~~L~C~~~~~~P~~~i~W~~~~~~l 63 (65)
|+.+.|.|.+. +.|.|.|+|||+++.+
T Consensus 1 G~~~~l~C~~~-g~P~p~v~W~k~~~~l 27 (73)
T cd05852 1 GGRVIIECKPK-AAPKPKFSWSKGTELL 27 (73)
T ss_pred CCeEEEEEecc-eeCCCEEEEEeCCEec
Confidence 67899999996 5799999999999865
No 53
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=98.39 E-value=1.1e-06 Score=49.05 Aligned_cols=29 Identities=17% Similarity=0.486 Sum_probs=25.1
Q ss_pred cCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728 35 ENQEITLECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 35 ~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
.|..++|.|.+. |+|.+.++|+|||..+.
T Consensus 22 ~g~~v~L~C~a~-G~P~p~i~W~k~g~~l~ 50 (109)
T cd05773 22 GSSDANLVCQAQ-GVPRVQFRWAKNGVPLD 50 (109)
T ss_pred CCCEEEEEEECc-ccCCCEEEEEECCEECC
Confidence 467899999996 58999999999998763
No 54
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.39 E-value=7.9e-07 Score=47.45 Aligned_cols=32 Identities=25% Similarity=0.457 Sum_probs=28.1
Q ss_pred EeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728 32 EIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63 (65)
Q Consensus 32 ~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l 63 (65)
.+.+|+.++|+|.+.++.|..++.|||+|+.+
T Consensus 10 ~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~ 41 (83)
T cd05753 10 VVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAK 41 (83)
T ss_pred eecCCCCEEEEeeCCCCCcceEEEEEECCeEc
Confidence 57899999999998766778899999999865
No 55
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.38 E-value=2.3e-06 Score=46.55 Aligned_cols=33 Identities=24% Similarity=0.456 Sum_probs=28.0
Q ss_pred EEeecCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728 31 IEIRENQEITLECLVKNAKPAA-KIVWYRGNTELK 64 (65)
Q Consensus 31 ~~~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~ 64 (65)
..+.+|+.++|.|.+.+ .|.| .|.|+++++.+.
T Consensus 11 ~~~~~G~~v~L~C~~~g-~P~P~~v~W~~~~~~i~ 44 (98)
T cd05758 11 QYAILGDKGRVECFIFS-TPPPDRIVWTWKENELE 44 (98)
T ss_pred EEEeCCCcEEEEEEEcc-cCCCCEeEEEECCEEcc
Confidence 46789999999999964 6887 699999998763
No 56
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.37 E-value=7.5e-07 Score=47.74 Aligned_cols=31 Identities=26% Similarity=0.549 Sum_probs=26.7
Q ss_pred ecCCcEEEEEEecCCCC-CceEEEEECCEEcc
Q psy7728 34 RENQEITLECLVKNAKP-AAKIVWYRGNTELK 64 (65)
Q Consensus 34 ~~G~~~~L~C~~~~~~P-~~~i~W~~~~~~l~ 64 (65)
..|+.++|.|.+.+.+| .++|+|++||+.+.
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~ 42 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELT 42 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECC
Confidence 36889999999998877 47899999999874
No 57
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=98.37 E-value=5e-07 Score=47.34 Aligned_cols=25 Identities=32% Similarity=0.801 Sum_probs=21.4
Q ss_pred EEEEEEecCCCCCceEEEEECCEEcc
Q psy7728 39 ITLECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 39 ~~L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
++|.|.+. |.|.|.|+|||+|.++.
T Consensus 1 v~L~C~~~-g~P~p~v~W~k~g~~l~ 25 (77)
T cd05760 1 VTLRCHID-GHPRPTYQWFRDGTPLS 25 (77)
T ss_pred CEEEEEee-ecCCCcEEEEECCEECC
Confidence 47999985 57999999999999873
No 58
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=98.37 E-value=1.4e-06 Score=47.78 Aligned_cols=32 Identities=19% Similarity=0.328 Sum_probs=27.7
Q ss_pred eecCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728 33 IRENQEITLECLVKNAKPAA-KIVWYRGNTELK 64 (65)
Q Consensus 33 ~~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~ 64 (65)
+..|+..+|+|.+.+..|+. +++|+|||+++.
T Consensus 11 ~~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~ 43 (94)
T cd05766 11 GSLSHPHLLVCHVWGFYPPEITVKWFKNGQEET 43 (94)
T ss_pred ccCCCCeEEEEEEeeecCCCCEEEEEECCeecC
Confidence 34678899999999999987 899999999864
No 59
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.35 E-value=7.9e-07 Score=45.88 Aligned_cols=26 Identities=23% Similarity=0.654 Sum_probs=22.1
Q ss_pred cEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728 38 EITLECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 38 ~~~L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
.++|.|.+. |.|.|.|+|||+|.++.
T Consensus 1 ~v~l~C~~~-G~P~p~v~W~k~g~~~~ 26 (71)
T cd05723 1 DVIFECEVT-GKPTPTVKWVKNGDMVI 26 (71)
T ss_pred CEEEEEEEE-EeCCCEEEEEECCeECC
Confidence 378999995 57999999999998763
No 60
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=98.34 E-value=6.1e-07 Score=47.01 Aligned_cols=24 Identities=29% Similarity=0.727 Sum_probs=20.9
Q ss_pred EEEEEEecCCCCCceEEEEECCEEc
Q psy7728 39 ITLECLVKNAKPAAKIVWYRGNTEL 63 (65)
Q Consensus 39 ~~L~C~~~~~~P~~~i~W~~~~~~l 63 (65)
++|.|.+. |+|+|+|+|||||..+
T Consensus 1 i~l~C~~~-G~P~P~v~W~k~g~~l 24 (77)
T cd05733 1 IVIKCEAK-GNPPPTFSWTRNGTHF 24 (77)
T ss_pred CEEEeeCc-ccCCCeEEEEECCeEC
Confidence 47999985 5799999999999876
No 61
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=98.34 E-value=9.8e-07 Score=48.43 Aligned_cols=31 Identities=23% Similarity=0.488 Sum_probs=25.3
Q ss_pred EeecCCcEEEEEEecCCCC-CceEEEEE-CCEEc
Q psy7728 32 EIRENQEITLECLVKNAKP-AAKIVWYR-GNTEL 63 (65)
Q Consensus 32 ~~~~G~~~~L~C~~~~~~P-~~~i~W~~-~~~~l 63 (65)
.+..|+.++|.|.+.+ .| ++.|+||+ |++.+
T Consensus 11 ~v~~G~~v~l~C~v~G-~P~~p~i~W~~~~g~~l 43 (96)
T cd05865 11 EISVGESKFFLCQVAG-EAKDKDISWFSPNGEKL 43 (96)
T ss_pred EECCCCeEEEEEEEeC-CCCCCEEEEECCCCcCc
Confidence 5778999999999966 56 57999998 77654
No 62
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.33 E-value=1.3e-06 Score=47.54 Aligned_cols=28 Identities=18% Similarity=0.581 Sum_probs=23.8
Q ss_pred CCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728 36 NQEITLECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 36 G~~~~L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
|..+.|.|.+. |+|.|.|+|||+++.+.
T Consensus 19 ~~~v~l~C~a~-G~P~P~i~W~k~~~~i~ 46 (93)
T cd05849 19 EGKVSVNCRAR-ANPFPIYKWRKNNLDID 46 (93)
T ss_pred CCeEEEeCcCc-cCCCCEEEEEECCEEcc
Confidence 44799999995 57999999999998763
No 63
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=98.33 E-value=8.3e-07 Score=46.39 Aligned_cols=25 Identities=40% Similarity=0.779 Sum_probs=21.6
Q ss_pred EEEEEEecCCCCCceEEEEECCEEcc
Q psy7728 39 ITLECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 39 ~~L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
++|.|.+. |.|.|.|+|||||+.+.
T Consensus 1 v~L~C~v~-G~P~P~v~W~k~~~~i~ 25 (75)
T cd05744 1 VRLECRVS-AIPPPQIFWKKNNEMLT 25 (75)
T ss_pred CEEEEEEe-ecCCCeEEEEECCEECC
Confidence 47999995 58999999999998874
No 64
>PHA02785 IL-beta-binding protein; Provisional
Probab=98.33 E-value=5.4e-06 Score=53.90 Aligned_cols=53 Identities=15% Similarity=0.234 Sum_probs=35.6
Q ss_pred EEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCC--ceEEEEECCEEcc
Q psy7728 9 TRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPA--AKIVWYRGNTELK 64 (65)
Q Consensus 9 ~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~--~~i~W~~~~~~l~ 64 (65)
+.|.|..+...|.+.. + ..+.+..|+.++|+|.+.++.++ +.|.|+|||+.+.
T Consensus 211 v~l~V~~~~~pp~~~~-p--~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~ 265 (326)
T PHA02785 211 VKLEVRDRIIPPTMQL-P--EGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYE 265 (326)
T ss_pred EEEEEeccCCCceecC-C--CcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECC
Confidence 4566654333334432 2 24567789999999999775433 5899999998763
No 65
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=98.32 E-value=1e-06 Score=46.13 Aligned_cols=27 Identities=15% Similarity=0.439 Sum_probs=23.6
Q ss_pred CCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728 36 NQEITLECLVKNAKPAAKIVWYRGNTEL 63 (65)
Q Consensus 36 G~~~~L~C~~~~~~P~~~i~W~~~~~~l 63 (65)
|+.++|.|.+. +.|.|.|+||+++..+
T Consensus 1 G~~v~l~C~~~-g~P~p~v~W~~~~~~~ 27 (78)
T cd05743 1 GETVEFTCVAT-GVPTPIINWRLNWGHV 27 (78)
T ss_pred CCEEEEEEEEE-EecCCEEEEEECCeEC
Confidence 68899999996 5799999999998765
No 66
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=98.32 E-value=7.8e-07 Score=46.74 Aligned_cols=25 Identities=36% Similarity=0.757 Sum_probs=21.4
Q ss_pred EEEEEEecCCCCCceEEEEECCEEcc
Q psy7728 39 ITLECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 39 ~~L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
++|.|.+. |.|.|.|+|||+++++.
T Consensus 1 v~l~C~v~-G~P~P~v~W~k~~~~l~ 25 (75)
T cd05893 1 VRLECRVS-GVPHPQIFWKKENESLT 25 (75)
T ss_pred CEEEEEEe-EecCCEEEEEECCEECC
Confidence 47999995 57999999999998764
No 67
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=98.31 E-value=7e-07 Score=46.40 Aligned_cols=26 Identities=19% Similarity=0.650 Sum_probs=22.3
Q ss_pred EEEEEEecCCCCCceEEEEECCEEcc
Q psy7728 39 ITLECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 39 ~~L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
+.|.|.+.++.|.+.++|||||+++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~ 26 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIG 26 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccc
Confidence 47999987778999999999998863
No 68
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.30 E-value=8.9e-07 Score=48.38 Aligned_cols=32 Identities=16% Similarity=0.564 Sum_probs=27.5
Q ss_pred EEeecCCcEEEEEEecCC----CCCceEEEEECCEE
Q psy7728 31 IEIRENQEITLECLVKNA----KPAAKIVWYRGNTE 62 (65)
Q Consensus 31 ~~~~~G~~~~L~C~~~~~----~P~~~i~W~~~~~~ 62 (65)
..+.+|+.+.|.|.+.+. .|.+.|+|||+|..
T Consensus 9 ~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~ 44 (94)
T cd05756 9 SYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGK 44 (94)
T ss_pred EEEecCCCeEEECCCCCcccccCCCceEEEEEcCCC
Confidence 467899999999998765 68899999999865
No 69
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.30 E-value=2e-06 Score=45.95 Aligned_cols=31 Identities=29% Similarity=0.529 Sum_probs=26.5
Q ss_pred EEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728 31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63 (65)
Q Consensus 31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l 63 (65)
+.+.+|+.+.|.|.+. + |.+.|.|||++..+
T Consensus 6 ~~v~~g~~v~L~C~~~-~-p~~~i~W~k~~~~~ 36 (89)
T cd04979 6 VTVVEGNSVFLECSPK-S-NLASVVWLFQGGPL 36 (89)
T ss_pred EEEECCCcEEEEEeCC-C-CCceEEEEECCccc
Confidence 5688999999999985 4 88899999998754
No 70
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=98.29 E-value=1.1e-06 Score=46.27 Aligned_cols=24 Identities=29% Similarity=0.649 Sum_probs=20.7
Q ss_pred EEEEEEecCCCCCceEEEEECCEEc
Q psy7728 39 ITLECLVKNAKPAAKIVWYRGNTEL 63 (65)
Q Consensus 39 ~~L~C~~~~~~P~~~i~W~~~~~~l 63 (65)
+.|.|.+. |+|.|.|+|||||..+
T Consensus 1 ~~l~C~~~-G~P~P~v~W~k~g~~~ 24 (77)
T cd05875 1 IIIECEAK-GNPVPTFQWTRNGKFF 24 (77)
T ss_pred CEEEEecc-ccCCCEEEEEECCEEc
Confidence 46899995 5799999999999865
No 71
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.27 E-value=5.1e-06 Score=51.92 Aligned_cols=33 Identities=12% Similarity=0.415 Sum_probs=27.8
Q ss_pred EeecCCcEEEEEEecCC----CCCceEEEEECCEEcc
Q psy7728 32 EIRENQEITLECLVKNA----KPAAKIVWYRGNTELK 64 (65)
Q Consensus 32 ~~~~G~~~~L~C~~~~~----~P~~~i~W~~~~~~l~ 64 (65)
.+.+|+.++|+|.+.++ .|.++|+|||||+++.
T Consensus 140 ~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~ 176 (227)
T PHA02826 140 QFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVL 176 (227)
T ss_pred eEecCCCEEEEeeCCCCccccCCCceEEEEECCEECC
Confidence 56789999999998654 4689999999999873
No 72
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.26 E-value=1.7e-06 Score=47.93 Aligned_cols=33 Identities=15% Similarity=0.266 Sum_probs=29.9
Q ss_pred EEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728 31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63 (65)
Q Consensus 31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l 63 (65)
..+.+|+.+.|.|....+.|++.+.|++|+.++
T Consensus 13 ~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~ 45 (96)
T cd05727 13 VKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPN 45 (96)
T ss_pred eeeeeCCcEEEeeCCCCCCCCCEEEEEECCccc
Confidence 478999999999999999999999999998753
No 73
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.26 E-value=4.7e-06 Score=43.31 Aligned_cols=32 Identities=16% Similarity=0.519 Sum_probs=27.7
Q ss_pred EEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728 31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63 (65)
Q Consensus 31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l 63 (65)
+.+..|+.++|.|.+. +.|.+.+.|||++..+
T Consensus 4 ~~~~~G~~~~l~C~~~-~~p~~~v~W~k~~~~~ 35 (85)
T cd05729 4 HAVPAGSTVRLKCPAS-GNPRPTITWLKDGKPF 35 (85)
T ss_pred eEecCCCcEEEEEEcC-CCCCCeEEEEECCEEC
Confidence 4677899999999996 4689999999998875
No 74
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.25 E-value=2.6e-06 Score=47.32 Aligned_cols=31 Identities=29% Similarity=0.558 Sum_probs=26.1
Q ss_pred ecCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728 34 RENQEITLECLVKNAKPAA-KIVWYRGNTELK 64 (65)
Q Consensus 34 ~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~ 64 (65)
..|..++|+|.+.+..|.. .++|+|||+++.
T Consensus 14 ~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~ 45 (102)
T cd05768 14 SLQETATLTCLVKGFSPSDIFVKWLQNGQPLS 45 (102)
T ss_pred CcCCceEEEEEEeeEeCCCCEEEEEECCEECC
Confidence 3467799999999998875 689999999864
No 75
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=98.25 E-value=2.1e-06 Score=46.10 Aligned_cols=29 Identities=21% Similarity=0.617 Sum_probs=24.5
Q ss_pred ecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728 34 RENQEITLECLVKNAKPAAKIVWYRGNTEL 63 (65)
Q Consensus 34 ~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l 63 (65)
..|..+.|.|.+. ++|++.|+|||+++.+
T Consensus 17 ~~~~~~~l~C~~~-g~p~p~i~W~k~~~~l 45 (91)
T cd04967 17 SDEGKVSLNCRAR-GSPPPTYRWLMNGTEI 45 (91)
T ss_pred CCCCEEEEEEeee-EcCCCEEEEEECCEEC
Confidence 3456799999995 4799999999999987
No 76
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=98.25 E-value=2e-06 Score=45.00 Aligned_cols=25 Identities=36% Similarity=0.723 Sum_probs=22.3
Q ss_pred EEEEEEecCCCCC-ceEEEEECCEEc
Q psy7728 39 ITLECLVKNAKPA-AKIVWYRGNTEL 63 (65)
Q Consensus 39 ~~L~C~~~~~~P~-~~i~W~~~~~~l 63 (65)
++|.|.+.+.+|+ .+|+|+|||+++
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~ 27 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEV 27 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEEC
Confidence 6899999999998 699999999863
No 77
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=98.25 E-value=1.3e-06 Score=45.23 Aligned_cols=25 Identities=32% Similarity=0.651 Sum_probs=21.4
Q ss_pred EEEEEEecCCCCCceEEEEECCEEcc
Q psy7728 39 ITLECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 39 ~~L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
+.|.|.+. |.|+|.++|||||+++.
T Consensus 1 ~~l~c~v~-g~P~p~v~W~k~g~~l~ 25 (71)
T cd04976 1 VRLPVKVK-AYPPPEIQWYKNGKLIS 25 (71)
T ss_pred CEEEeEEE-EeCCCEEEEEECCEECC
Confidence 46899995 57999999999999874
No 78
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.24 E-value=2.5e-06 Score=45.83 Aligned_cols=27 Identities=11% Similarity=0.384 Sum_probs=24.0
Q ss_pred CCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728 36 NQEITLECLVKNAKPAAKIVWYRGNTEL 63 (65)
Q Consensus 36 G~~~~L~C~~~~~~P~~~i~W~~~~~~l 63 (65)
|+.++|.|.+.+ .|++.|+|+|+++.+
T Consensus 1 g~~~~l~C~~~g-~p~~~i~W~k~~~~i 27 (88)
T cd05735 1 GQKKEMSCTAHG-EKPIIVRWEKEDRII 27 (88)
T ss_pred CCeEEEEEEEEC-CCCCEEEEeeCCEEC
Confidence 788999999975 699999999999876
No 79
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.20 E-value=1.7e-06 Score=44.97 Aligned_cols=24 Identities=13% Similarity=0.419 Sum_probs=21.0
Q ss_pred EEEEEecCCCCCceEEEEECCEEcc
Q psy7728 40 TLECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 40 ~L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
.+.|.+. |.|.|.++|||||+++.
T Consensus 2 ~~~c~v~-G~P~P~v~W~k~g~~l~ 25 (70)
T cd05864 2 KIPVKYY-GYPPPEVKWYKNGQLIV 25 (70)
T ss_pred EEEeEEE-EeCCCEEEEEECCEECC
Confidence 6889985 58999999999999874
No 80
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=98.19 E-value=2e-06 Score=44.68 Aligned_cols=25 Identities=20% Similarity=0.611 Sum_probs=21.1
Q ss_pred EEEEEEecCCCCCceEEEEECCEEcc
Q psy7728 39 ITLECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 39 ~~L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
++|.|.+. |+|.|.|+|||++.++.
T Consensus 1 a~l~C~~~-G~P~p~v~W~k~~~~~~ 25 (74)
T cd05738 1 ATMLCAAS-GNPDPEITWFKDFLPVD 25 (74)
T ss_pred CEEEEEEe-EecCCEEEEEECCEECc
Confidence 37999985 58999999999998764
No 81
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=98.19 E-value=3.1e-06 Score=43.64 Aligned_cols=25 Identities=20% Similarity=0.608 Sum_probs=21.7
Q ss_pred cEEEEEEecCCCCCceEEEEECCEEc
Q psy7728 38 EITLECLVKNAKPAAKIVWYRGNTEL 63 (65)
Q Consensus 38 ~~~L~C~~~~~~P~~~i~W~~~~~~l 63 (65)
.+.|.|.+. |.|.|.++|||+|+.+
T Consensus 1 ~~~l~c~~~-G~P~p~v~W~k~g~~l 25 (74)
T cd05748 1 SVRLEVPIS-GRPTPTVTWSKDGKPL 25 (74)
T ss_pred CEEEEeeEe-eeCCCeEEEEECCEEc
Confidence 368999995 5899999999999886
No 82
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.19 E-value=4.8e-06 Score=40.19 Aligned_cols=29 Identities=31% Similarity=0.699 Sum_probs=24.3
Q ss_pred cCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728 35 ENQEITLECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 35 ~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
+|+.++|.|.+ .+.|.+.+.||++++.+.
T Consensus 1 ~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~ 29 (63)
T smart00408 1 EGQSVTLTCPA-EGDPVPNITWLKDGKPLP 29 (63)
T ss_pred CCceEEEEeeC-ccCCCCeEEEEECCEECC
Confidence 58899999996 457889999999988653
No 83
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.19 E-value=1.6e-06 Score=44.38 Aligned_cols=25 Identities=16% Similarity=0.654 Sum_probs=21.2
Q ss_pred EEEEEEecCCCCCceEEEEECCEEcc
Q psy7728 39 ITLECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 39 ~~L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
++|.|.+. |.|.|.|+|+|+|.++.
T Consensus 1 v~L~C~~~-g~P~p~i~W~k~g~~~~ 25 (69)
T cd05746 1 VQIPCSAQ-GDPEPTITWNKDGVQVT 25 (69)
T ss_pred CEeEecce-EeCCCEEEEEECCEECC
Confidence 47999985 57999999999998763
No 84
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=98.18 E-value=3.9e-06 Score=47.74 Aligned_cols=31 Identities=26% Similarity=0.533 Sum_probs=26.5
Q ss_pred ecCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728 34 RENQEITLECLVKNAKPAA-KIVWYRGNTELK 64 (65)
Q Consensus 34 ~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~ 64 (65)
.++..++|+|.+.+..|+. +|+|+|||+++.
T Consensus 16 ~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~ 47 (115)
T cd05769 16 RNKRKATLVCLATGFYPDHVSLSWKVNGKEVT 47 (115)
T ss_pred ccCCCcEEEEEEEeEeCCCcEEEEEECCEECC
Confidence 3567789999999999984 899999998864
No 85
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.17 E-value=2.7e-06 Score=45.60 Aligned_cols=26 Identities=19% Similarity=0.655 Sum_probs=22.4
Q ss_pred CCcEEEEEEecCCCCCceEEEEECCEE
Q psy7728 36 NQEITLECLVKNAKPAAKIVWYRGNTE 62 (65)
Q Consensus 36 G~~~~L~C~~~~~~P~~~i~W~~~~~~ 62 (65)
|+.++|.|.+ .++|.+.|.|||+|..
T Consensus 1 G~~v~L~C~~-~g~P~p~v~W~k~g~~ 26 (90)
T cd05726 1 GRTVTFQCEA-TGNPQPAIFWQKEGSQ 26 (90)
T ss_pred CCEEEEEEEC-CccCCCEEEEEeCCCc
Confidence 6889999998 5579999999999864
No 86
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=98.17 E-value=3.7e-06 Score=46.88 Aligned_cols=32 Identities=28% Similarity=0.507 Sum_probs=28.3
Q ss_pred EeecCCcEEEEEEecCCCCC--ceEEEEECCEEc
Q psy7728 32 EIRENQEITLECLVKNAKPA--AKIVWYRGNTEL 63 (65)
Q Consensus 32 ~~~~G~~~~L~C~~~~~~P~--~~i~W~~~~~~l 63 (65)
.+.+|+.+++.|.+.++.|. ..|.|||+...+
T Consensus 11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l 44 (99)
T cd07689 11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLL 44 (99)
T ss_pred cccCCceEEEEEEecCcccCCceEEEEecCccee
Confidence 57999999999999999998 789999987654
No 87
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.16 E-value=3.6e-06 Score=46.48 Aligned_cols=32 Identities=22% Similarity=0.510 Sum_probs=27.1
Q ss_pred eecCCcEEEEEEecCCCC-CceEEEEECCEEcc
Q psy7728 33 IRENQEITLECLVKNAKP-AAKIVWYRGNTELK 64 (65)
Q Consensus 33 ~~~G~~~~L~C~~~~~~P-~~~i~W~~~~~~l~ 64 (65)
..+++.++|+|.+.+.+| ...|+|+|||+++.
T Consensus 14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~ 46 (100)
T cd07699 14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVS 46 (100)
T ss_pred HccCCCcEEEEEEEeEECCCCEEEEEECCEECc
Confidence 345677899999999998 67899999999873
No 88
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.13 E-value=2.2e-06 Score=44.21 Aligned_cols=24 Identities=29% Similarity=0.714 Sum_probs=20.4
Q ss_pred EEEEEEecCCCCCceEEEEECCEEc
Q psy7728 39 ITLECLVKNAKPAAKIVWYRGNTEL 63 (65)
Q Consensus 39 ~~L~C~~~~~~P~~~i~W~~~~~~l 63 (65)
+.|.|.+. |.|.|.|+|+|++..+
T Consensus 1 ~~L~C~~~-G~P~P~v~W~k~~~~~ 24 (71)
T cd05876 1 LVLECIAE-GLPTPEVHWDRIDGPL 24 (71)
T ss_pred CEEEEEee-EecCCeEEEEECCcCC
Confidence 47999995 5899999999998754
No 89
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.12 E-value=3.3e-06 Score=44.32 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=21.2
Q ss_pred EEEEEEecCCCCCceEEEEECCEEcc
Q psy7728 39 ITLECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 39 ~~L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
+.|.|.+. |.|+|.++|||||+++.
T Consensus 1 ~~l~c~v~-g~P~P~v~W~kdg~~l~ 25 (72)
T cd07702 1 YRLTPKVK-AFPAPEVIWLKDGLPAA 25 (72)
T ss_pred CeEEeeEE-EcCCCeEEEEECCEECC
Confidence 36899985 57999999999999864
No 90
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=98.11 E-value=6.8e-06 Score=44.43 Aligned_cols=31 Identities=26% Similarity=0.490 Sum_probs=24.6
Q ss_pred EEeecCCcEEEEEEecCCCCCceEEEEE-CCEEc
Q psy7728 31 IEIRENQEITLECLVKNAKPAAKIVWYR-GNTEL 63 (65)
Q Consensus 31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~-~~~~l 63 (65)
..+..|+.+.|.|.+.+. |+ .++||+ +++.+
T Consensus 10 ~~v~~G~~~~l~C~~~G~-p~-~i~W~~~~~~~~ 41 (92)
T cd04977 10 GEISVGESKFFLCQVIGE-PK-DISWFSPNGEKL 41 (92)
T ss_pred EEECCCCeEEEEEEeEee-CC-eEEEECCCCCEe
Confidence 367889999999999764 65 999998 56543
No 91
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.09 E-value=5.3e-06 Score=43.12 Aligned_cols=24 Identities=21% Similarity=0.613 Sum_probs=20.9
Q ss_pred CCcEEEEEEecCCCCCceEEEEECC
Q psy7728 36 NQEITLECLVKNAKPAAKIVWYRGN 60 (65)
Q Consensus 36 G~~~~L~C~~~~~~P~~~i~W~~~~ 60 (65)
|+.++|.|.+ .+.|.|.|+|||++
T Consensus 1 G~~v~l~C~~-~g~P~p~v~W~k~~ 24 (81)
T cd05765 1 GETASFHCDV-TGRPPPEITWEKQV 24 (81)
T ss_pred CCcEEEEeec-cccCCCcEEEEecC
Confidence 6889999998 45899999999973
No 92
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=98.08 E-value=4.8e-06 Score=44.47 Aligned_cols=23 Identities=17% Similarity=0.534 Sum_probs=19.4
Q ss_pred EEEEecCCCCCceEEEEECCEEcc
Q psy7728 41 LECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 41 L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
+-|.+ .|+|.|.|+|||||++|.
T Consensus 3 i~~~v-~G~P~Pti~W~kng~~l~ 25 (79)
T cd05855 3 IPFTV-KGNPKPTLQWFHEGAILN 25 (79)
T ss_pred EEEEE-eEeCCCceEEEECCEECC
Confidence 56777 458999999999999885
No 93
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=98.07 E-value=6.4e-06 Score=44.25 Aligned_cols=24 Identities=17% Similarity=0.526 Sum_probs=20.8
Q ss_pred CCcEEEEEEecCCCCCceEEEEECC
Q psy7728 36 NQEITLECLVKNAKPAAKIVWYRGN 60 (65)
Q Consensus 36 G~~~~L~C~~~~~~P~~~i~W~~~~ 60 (65)
|+.++|.|.+. |.|.|.|+|+|++
T Consensus 1 G~~v~l~C~v~-g~P~P~i~W~k~~ 24 (90)
T cd04974 1 GSDVEFHCKVY-SDAQPHIQWLKHV 24 (90)
T ss_pred CCcEEEEEEEe-CCCCCeEEEEEec
Confidence 67899999995 5799999999963
No 94
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=98.06 E-value=9.3e-06 Score=44.78 Aligned_cols=21 Identities=29% Similarity=0.688 Sum_probs=19.6
Q ss_pred EEEEEEecCCCCCceEEEEEC
Q psy7728 39 ITLECLVKNAKPAAKIVWYRG 59 (65)
Q Consensus 39 ~~L~C~~~~~~P~~~i~W~~~ 59 (65)
..++|.+.+|+|+++|+||++
T Consensus 18 ~va~C~s~~gkPaa~IsW~~~ 38 (95)
T cd07703 18 PVAKCVSANGRPPARISWSST 38 (95)
T ss_pred EEEEEEcCCCCCCcEEEEEcC
Confidence 568999999999999999998
No 95
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=98.04 E-value=7.8e-06 Score=44.96 Aligned_cols=22 Identities=32% Similarity=0.595 Sum_probs=19.7
Q ss_pred cEEEEEEecCCCCCceEEEEEC
Q psy7728 38 EITLECLVKNAKPAAKIVWYRG 59 (65)
Q Consensus 38 ~~~L~C~~~~~~P~~~i~W~~~ 59 (65)
...++|.+.+|+|+|+|+||++
T Consensus 17 ~~va~C~s~~gkP~a~ItW~~~ 38 (95)
T cd05719 17 VTVATCVSANGKPPATISWETT 38 (95)
T ss_pred cEEEEEECCCCcCCCEEEEEeC
Confidence 3457999999999999999997
No 96
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=98.04 E-value=6.6e-06 Score=41.76 Aligned_cols=24 Identities=33% Similarity=0.756 Sum_probs=20.5
Q ss_pred EEEEEEecCCCCCceEEEEECCEEc
Q psy7728 39 ITLECLVKNAKPAAKIVWYRGNTEL 63 (65)
Q Consensus 39 ~~L~C~~~~~~P~~~i~W~~~~~~l 63 (65)
++|.|.+. |.|.|.++|||++..+
T Consensus 1 v~l~C~~~-g~P~p~v~W~k~~~~~ 24 (71)
T cd05731 1 LLLECIAE-GLPTPEISWIKIGGEL 24 (71)
T ss_pred CEEEEEee-EecCCeEEEEECCeEC
Confidence 47999995 5799999999998765
No 97
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=98.02 E-value=7.1e-06 Score=43.68 Aligned_cols=23 Identities=22% Similarity=0.651 Sum_probs=19.5
Q ss_pred EEEEecCCCCCceEEEEECCEEcc
Q psy7728 41 LECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 41 L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
+.|.+. |+|.|.|+|||||+++.
T Consensus 3 i~~~v~-G~P~P~v~W~k~g~~i~ 25 (81)
T cd04971 3 IPFTVR-GNPKPTLTWYHNGAVLN 25 (81)
T ss_pred EEEEeE-eeCCCcEEEEECCEECc
Confidence 578884 58999999999999874
No 98
>KOG4221|consensus
Probab=98.01 E-value=2.1e-05 Score=58.55 Aligned_cols=61 Identities=21% Similarity=0.468 Sum_probs=44.9
Q ss_pred cccCCCEEEEEEcCCCccE-EEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728 3 SRYGPRTRLYQFAPPSSIE-IVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 3 ~~~~~~~~L~V~~pP~~~~-i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
+|++..+.|+|.-.|.... +.-...++...+.+|+.+.|.|.+. +-|.|.|.|.|||+.+.
T Consensus 218 ~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs-~~p~p~v~Wlrng~~i~ 279 (1381)
T KOG4221|consen 218 QRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVS-GVPKPSVKWLRNGEKIS 279 (1381)
T ss_pred CCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEec-CCCCCceEEeeCCeeee
Confidence 5788999999994333211 1111233456789999999999994 58999999999998863
No 99
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.01 E-value=1.5e-05 Score=40.97 Aligned_cols=27 Identities=26% Similarity=0.571 Sum_probs=22.1
Q ss_pred CCcEEEEEEecCCCCCceEEEEE-CCEEc
Q psy7728 36 NQEITLECLVKNAKPAAKIVWYR-GNTEL 63 (65)
Q Consensus 36 G~~~~L~C~~~~~~P~~~i~W~~-~~~~l 63 (65)
|+.++|.|.+. +.|.|.++|++ +++.+
T Consensus 1 G~~~~l~C~~~-g~P~p~v~W~~~~~~~~ 28 (74)
T cd05764 1 GQRATLRCKAR-GDPEPAIHWISPDGKLI 28 (74)
T ss_pred CCeEEEEEEcc-CcCCCEEEEEeCCCEEe
Confidence 68899999985 57999999997 55543
No 100
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.00 E-value=1.5e-05 Score=42.53 Aligned_cols=26 Identities=19% Similarity=0.593 Sum_probs=20.9
Q ss_pred CcEEEEEEecCCCCCc--eEEEEECCEEc
Q psy7728 37 QEITLECLVKNAKPAA--KIVWYRGNTEL 63 (65)
Q Consensus 37 ~~~~L~C~~~~~~P~~--~i~W~~~~~~l 63 (65)
++++|.|.+.+ +|.+ .++|+|||+++
T Consensus 1 ~~~~L~C~a~g-~P~p~~~v~W~~~g~~i 28 (85)
T cd05854 1 ENLTLQCHASH-DPTMDLTFTWSLDDFPI 28 (85)
T ss_pred CcEEEEEEEec-CCCCCeEEEEEECCeEc
Confidence 46899999965 5655 68999999876
No 101
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.00 E-value=1.8e-05 Score=42.90 Aligned_cols=27 Identities=22% Similarity=0.614 Sum_probs=23.7
Q ss_pred CCcEEEEEEecCCCCCc-eEEEEECCEE
Q psy7728 36 NQEITLECLVKNAKPAA-KIVWYRGNTE 62 (65)
Q Consensus 36 G~~~~L~C~~~~~~P~~-~i~W~~~~~~ 62 (65)
|+.++|+|.+.+..|+. .|+|+|+|+.
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~ 41 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGED 41 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEE
Confidence 67899999999988876 8999999963
No 102
>KOG3515|consensus
Probab=98.00 E-value=6.1e-06 Score=58.83 Aligned_cols=49 Identities=18% Similarity=0.429 Sum_probs=40.4
Q ss_pred EEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728 13 QFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63 (65)
Q Consensus 13 V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l 63 (65)
|+.+|..|.+..... .+ .+++|+.|.|.|.+.+++|++.+.||+.++.+
T Consensus 1 vl~~p~~pv~~~~~l-~~-~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~ 49 (741)
T KOG3515|consen 1 VLFPPNVPVCESSSL-TV-GLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGE 49 (741)
T ss_pred CCcCCCCccccCCCC-Ch-hhccCCcceeeeecCCCCCCcceEEEecCccc
Confidence 567888888765443 23 78999999999999999999999999998754
No 103
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=97.98 E-value=9.8e-06 Score=41.27 Aligned_cols=24 Identities=25% Similarity=0.760 Sum_probs=20.0
Q ss_pred EEEEEEecCCCCCceEEEEECCEEc
Q psy7728 39 ITLECLVKNAKPAAKIVWYRGNTEL 63 (65)
Q Consensus 39 ~~L~C~~~~~~P~~~i~W~~~~~~l 63 (65)
++|.|.+. |.|+|.++|+|++..+
T Consensus 1 v~l~C~~~-g~P~p~v~W~k~~~~~ 24 (69)
T cd05725 1 VEFQCEVG-GDPVPTVLWRKEDGEL 24 (69)
T ss_pred CEEEEECc-cCCCCEEEEEECCccC
Confidence 47999985 5799999999998654
No 104
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=97.98 E-value=1.7e-05 Score=43.26 Aligned_cols=31 Identities=19% Similarity=0.554 Sum_probs=25.3
Q ss_pred EEeecCCcEEEEEEecCCCCCceEEEEE-CCEEc
Q psy7728 31 IEIRENQEITLECLVKNAKPAAKIVWYR-GNTEL 63 (65)
Q Consensus 31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~-~~~~l 63 (65)
+.+.+|+.++|.|.+.| .|. .++||+ +++.+
T Consensus 10 ~~v~~G~~v~l~C~~~G-~P~-~v~W~k~~g~~~ 41 (92)
T cd05866 10 VELSVGESKFFTCTAIG-EPE-SIDWYNPQGEKI 41 (92)
T ss_pred eEEcCCCeEEEEEEEEE-eCC-eEEEEeCCCeEe
Confidence 36788999999999965 787 999998 46654
No 105
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=97.97 E-value=1.7e-05 Score=42.51 Aligned_cols=23 Identities=17% Similarity=0.507 Sum_probs=20.1
Q ss_pred CCcEEEEEEecCCCCCceEEEEEC
Q psy7728 36 NQEITLECLVKNAKPAAKIVWYRG 59 (65)
Q Consensus 36 G~~~~L~C~~~~~~P~~~i~W~~~ 59 (65)
|+.++|.|.+. +.|.|.|+|+|+
T Consensus 1 G~~v~L~C~~~-g~P~P~i~W~k~ 23 (90)
T cd05858 1 GSTVEFVCKVY-SDAQPHIQWLKH 23 (90)
T ss_pred CCeEEEEEEEe-cCCCCEEEEEEe
Confidence 67899999995 579999999994
No 106
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=97.96 E-value=9.2e-06 Score=44.30 Aligned_cols=33 Identities=12% Similarity=0.278 Sum_probs=27.2
Q ss_pred EeecCCcEEEEEEecCC----CCCceEEEEECCEEcc
Q psy7728 32 EIRENQEITLECLVKNA----KPAAKIVWYRGNTELK 64 (65)
Q Consensus 32 ~~~~G~~~~L~C~~~~~----~P~~~i~W~~~~~~l~ 64 (65)
.+.+|+...|+|...+. +|.+.|.||||++++.
T Consensus 6 ~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~ 42 (92)
T cd05757 6 ILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLE 42 (92)
T ss_pred EEeeccCCEEECCChHHccCCCCCCcEEEeECCEECC
Confidence 56789999999987543 3788999999999874
No 107
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=97.94 E-value=2.1e-05 Score=43.12 Aligned_cols=31 Identities=19% Similarity=0.404 Sum_probs=26.7
Q ss_pred EEeecCCcEEEEEEecCCCCCceEEEEECCEE
Q psy7728 31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTE 62 (65)
Q Consensus 31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~ 62 (65)
..+.+|+.+.|.|.+.+ .|.+.|.|+|+++.
T Consensus 7 ~tv~~G~tv~L~C~v~g-~~~~~v~W~k~~~~ 37 (95)
T cd05882 7 ETVAVGGTVTLKCGVKE-HDNSSLQWSNTAQQ 37 (95)
T ss_pred EEEecCCcEEEEEEEeC-CCCCeEEEeccCcc
Confidence 57899999999999965 68899999997753
No 108
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=97.92 E-value=2.3e-05 Score=43.30 Aligned_cols=33 Identities=18% Similarity=0.478 Sum_probs=28.9
Q ss_pred CeEEeecCCcEEEEEEecCCCCCceEEEEECCE
Q psy7728 29 SKIEIRENQEITLECLVKNAKPAAKIVWYRGNT 61 (65)
Q Consensus 29 ~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~ 61 (65)
+.+.+.+|+.+.|.|....+.|.+.|.|++++.
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~ 43 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDL 43 (95)
T ss_pred ceeEEecCCCEEEEecCCCCCCCCEEEEECCCC
Confidence 456899999999999977889999999998764
No 109
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.92 E-value=1.2e-05 Score=41.55 Aligned_cols=21 Identities=29% Similarity=0.757 Sum_probs=18.4
Q ss_pred EEEEEecCCCCCceEEEEECCE
Q psy7728 40 TLECLVKNAKPAAKIVWYRGNT 61 (65)
Q Consensus 40 ~L~C~~~~~~P~~~i~W~~~~~ 61 (65)
+|.|.+. |.|.|.|+|||+|.
T Consensus 2 ~l~C~~~-G~P~P~v~W~k~~~ 22 (75)
T cd05763 2 RLECAAT-GHPTPQIAWQKDGG 22 (75)
T ss_pred EeEeecc-cccCCEEEEEeCCC
Confidence 6899985 58999999999985
No 110
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=97.91 E-value=2.7e-05 Score=41.15 Aligned_cols=27 Identities=22% Similarity=0.573 Sum_probs=21.3
Q ss_pred CcEEEEEEecCCCCCc--eEEEEECCEEcc
Q psy7728 37 QEITLECLVKNAKPAA--KIVWYRGNTELK 64 (65)
Q Consensus 37 ~~~~L~C~~~~~~P~~--~i~W~~~~~~l~ 64 (65)
+.++|.|.+.+ .|.+ .++|+|||+++.
T Consensus 1 e~~~L~C~~~g-~P~p~i~~~W~~~g~~i~ 29 (85)
T cd04970 1 ESITLQCHASH-DPTLDLTFTWSFNGVPID 29 (85)
T ss_pred CcEEEEEEEec-CCCCCeEEEEEECCeEee
Confidence 46899999964 5766 679999998763
No 111
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=97.91 E-value=2.1e-05 Score=39.16 Aligned_cols=27 Identities=22% Similarity=0.639 Sum_probs=23.3
Q ss_pred CCcEEEEEEecCCCCCceEEEEECCEE
Q psy7728 36 NQEITLECLVKNAKPAAKIVWYRGNTE 62 (65)
Q Consensus 36 G~~~~L~C~~~~~~P~~~i~W~~~~~~ 62 (65)
|+.++|+|.+....|...+.|+++++.
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~ 27 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQS 27 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTT
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCcc
Confidence 788999999955678999999999864
No 112
>KOG3513|consensus
Probab=97.89 E-value=4.3e-05 Score=56.20 Aligned_cols=56 Identities=21% Similarity=0.449 Sum_probs=43.6
Q ss_pred cccCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728 3 SRYGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 3 ~~~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
++.....+|+|..+|.=.. .. ....+..|+++++.|.+. |+|-|.|+|+|||.++.
T Consensus 318 G~~~~~~~v~v~a~P~w~~--~~---~d~~~~~gs~v~~eC~a~-g~P~p~v~WlkNg~pl~ 373 (1051)
T KOG3513|consen 318 GSATHSGHVTVYAPPYWLQ--KP---QDTEADTGSNVTLECKAS-GKPNPTVKWLKNGEPLE 373 (1051)
T ss_pred ccceeeEEEEEecCchhhc--cc---ceeEecCCCCeEEEEEec-CCCCCceEEeeCCeecC
Confidence 3444568899999986432 11 235788999999999995 79999999999998874
No 113
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=97.88 E-value=2e-05 Score=40.76 Aligned_cols=24 Identities=17% Similarity=0.696 Sum_probs=20.6
Q ss_pred EEEEEecCCCCCceEEEEECCEEcc
Q psy7728 40 TLECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 40 ~L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
.|.|.+. |.|.+.++|||+++.+.
T Consensus 2 ~L~C~v~-g~P~p~v~W~k~~~~l~ 25 (76)
T cd05736 2 SLRCHAE-GIPLPRLTWLKNGMDIT 25 (76)
T ss_pred EeEeEee-ecCCCEEEEEECCEECC
Confidence 6899996 47999999999998763
No 114
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=97.85 E-value=4.4e-05 Score=41.22 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=23.5
Q ss_pred CcEEEEEEecC-CCCCceEEEEECCEEcc
Q psy7728 37 QEITLECLVKN-AKPAAKIVWYRGNTELK 64 (65)
Q Consensus 37 ~~~~L~C~~~~-~~P~~~i~W~~~~~~l~ 64 (65)
+++.|.|.+.. ..++..|.|++||+++.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~ 29 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLID 29 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECc
Confidence 36789999975 56789999999999874
No 115
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.83 E-value=4.3e-05 Score=41.87 Aligned_cols=29 Identities=21% Similarity=0.505 Sum_probs=25.0
Q ss_pred cCCcEEEEEEecCCCCC-ceEEEEECCEEc
Q psy7728 35 ENQEITLECLVKNAKPA-AKIVWYRGNTEL 63 (65)
Q Consensus 35 ~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l 63 (65)
.+..++|.|.+.+..|. ..|+|+|||+.+
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~ 42 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVA 42 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEEC
Confidence 34668999999999887 789999999986
No 116
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=97.82 E-value=6.5e-05 Score=40.44 Aligned_cols=38 Identities=21% Similarity=0.280 Sum_probs=29.5
Q ss_pred cEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEE
Q psy7728 20 IEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTE 62 (65)
Q Consensus 20 ~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~ 62 (65)
|.+...+. ..+.+|++++|+|.+. .|...+.|||+|..
T Consensus 3 P~L~a~p~---~vV~~G~~VtL~C~~~--~~~~~f~l~k~g~~ 40 (91)
T cd05751 3 PSLWAEPS---SVVPLGKPVTLRCQGP--YGAVEYRLYREGST 40 (91)
T ss_pred CEEEecCC---CccCCCCcEEEEEecC--CCCCEEEEEECCCC
Confidence 45655543 2678999999999874 67889999999874
No 117
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.81 E-value=3.7e-05 Score=40.67 Aligned_cols=31 Identities=26% Similarity=0.593 Sum_probs=26.5
Q ss_pred ecCCcEEEEEEecCCCCCc-eEEEEECCEEcc
Q psy7728 34 RENQEITLECLVKNAKPAA-KIVWYRGNTELK 64 (65)
Q Consensus 34 ~~G~~~~L~C~~~~~~P~~-~i~W~~~~~~l~ 64 (65)
..+..++|.|.+.+..|.. .|+|++||+.+.
T Consensus 6 ~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~ 37 (83)
T PF07654_consen 6 ELGGSVTLTCLVSGFYPKDITVTWLKNGKEVT 37 (83)
T ss_dssp HSTSEEEEEEEEEEEBSSTEEEEEEETTEEET
T ss_pred cCCCCEEEEEEEEEEECCCcEEEEEeccceee
Confidence 3478899999999999976 799999999764
No 118
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.80 E-value=0.0001 Score=40.47 Aligned_cols=30 Identities=17% Similarity=0.386 Sum_probs=25.3
Q ss_pred EEeecCCcEEEEEEecCCCCCceEEEEECCE
Q psy7728 31 IEIRENQEITLECLVKNAKPAAKIVWYRGNT 61 (65)
Q Consensus 31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~ 61 (65)
+.+.+|++++|.|...+ .|.+.|.||++++
T Consensus 2 v~~~~G~~VtL~C~~s~-~~~~~i~W~~~~~ 31 (94)
T cd07690 2 VLGKKGDTAELPCTASQ-KKSIQFHWKNSNQ 31 (94)
T ss_pred eEeeCCCCEEEEEEeCC-CCCcEEEEEECCc
Confidence 35788999999999865 6899999998773
No 119
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=97.78 E-value=6.3e-05 Score=40.99 Aligned_cols=29 Identities=17% Similarity=0.439 Sum_probs=24.7
Q ss_pred eEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728 30 KIEIRENQEITLECLVKNAKPAAKIVWYRG 59 (65)
Q Consensus 30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~ 59 (65)
.+.+.+|++++|.|.+.+ .|.+.|.||+.
T Consensus 6 ~v~v~eG~~v~L~C~~~~-~p~~~v~W~~~ 34 (95)
T cd07701 6 NVTVVEGGTANLTCRVDQ-NDNTSLQWSNP 34 (95)
T ss_pred eEEEecCCcEEEEEEEec-CCceEEEEeCC
Confidence 367899999999999865 68999999863
No 120
>smart00409 IG Immunoglobulin.
Probab=97.77 E-value=0.00015 Score=36.51 Aligned_cols=32 Identities=28% Similarity=0.793 Sum_probs=27.4
Q ss_pred EEeecCCcEEEEEEecCCCCCceEEEEEC-CEEc
Q psy7728 31 IEIRENQEITLECLVKNAKPAAKIVWYRG-NTEL 63 (65)
Q Consensus 31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~-~~~l 63 (65)
+.+..|+.++|.|.+.+. +.+.+.|+++ ++.+
T Consensus 4 ~~~~~g~~~~l~C~~~~~-~~~~~~W~~~~~~~v 36 (86)
T smart00409 4 VTVKEGESVTLSCEVSGS-PPPEVTWYKQGGKLL 36 (86)
T ss_pred EEEeCCCeEEEEEEEccC-CCCeEEEEECCCEEc
Confidence 467889999999999765 8899999998 7665
No 121
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=97.77 E-value=0.00015 Score=36.51 Aligned_cols=32 Identities=28% Similarity=0.793 Sum_probs=27.4
Q ss_pred EEeecCCcEEEEEEecCCCCCceEEEEEC-CEEc
Q psy7728 31 IEIRENQEITLECLVKNAKPAAKIVWYRG-NTEL 63 (65)
Q Consensus 31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~-~~~l 63 (65)
+.+..|+.++|.|.+.+. +.+.+.|+++ ++.+
T Consensus 4 ~~~~~g~~~~l~C~~~~~-~~~~~~W~~~~~~~v 36 (86)
T smart00410 4 VTVKEGESVTLSCEVSGS-PPPEVTWYKQGGKLL 36 (86)
T ss_pred EEEeCCCeEEEEEEEccC-CCCeEEEEECCCEEc
Confidence 467889999999999765 8899999998 7665
No 122
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=97.75 E-value=4.2e-05 Score=40.31 Aligned_cols=28 Identities=14% Similarity=0.370 Sum_probs=22.9
Q ss_pred CCcEEEEEEecCC-CCCceEEEEECCEEc
Q psy7728 36 NQEITLECLVKNA-KPAAKIVWYRGNTEL 63 (65)
Q Consensus 36 G~~~~L~C~~~~~-~P~~~i~W~~~~~~l 63 (65)
|+.++|.|.+.+. .|.+.|+|+++++.+
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~ 29 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKR 29 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCccc
Confidence 7889999999764 289999999887643
No 123
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.74 E-value=5.5e-05 Score=41.50 Aligned_cols=32 Identities=16% Similarity=0.358 Sum_probs=26.1
Q ss_pred eecCCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728 33 IRENQEITLECLVKNAKPA-AKIVWYRGNTELK 64 (65)
Q Consensus 33 ~~~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~ 64 (65)
...|...+|.|.+.+..|+ ..++|+|||+++.
T Consensus 12 ~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~ 44 (93)
T cd05770 12 AENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP 44 (93)
T ss_pred CcCCCceEEEEEEEEEeCCCCEEEEEECCEECC
Confidence 3456677999999998875 5799999999864
No 124
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.73 E-value=9.2e-05 Score=40.62 Aligned_cols=31 Identities=23% Similarity=0.490 Sum_probs=25.5
Q ss_pred ecCCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728 34 RENQEITLECLVKNAKPA-AKIVWYRGNTELK 64 (65)
Q Consensus 34 ~~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~ 64 (65)
..|+..+|.|.+.+..|. ..++|.|||+++.
T Consensus 13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~ 44 (94)
T cd05767 13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVT 44 (94)
T ss_pred cCCCCeEEEEEEEEEECCcCEEEEEECCeEcc
Confidence 345667999999999885 5799999999863
No 125
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=97.69 E-value=0.00023 Score=39.40 Aligned_cols=33 Identities=15% Similarity=0.382 Sum_probs=27.0
Q ss_pred EEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728 31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63 (65)
Q Consensus 31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l 63 (65)
..+.+|+.+.|.|.+.+..||..|.|.+++..+
T Consensus 11 ~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i 43 (98)
T cd05898 11 QYAVRGERGKVKCFIGSTPPPDRIAWAWKENVL 43 (98)
T ss_pred EEEeCCCcEEEEEEEccCCCCcEEEEEEccccc
Confidence 578899999999999765555678999987765
No 126
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.66 E-value=7.9e-05 Score=41.12 Aligned_cols=30 Identities=23% Similarity=0.451 Sum_probs=24.6
Q ss_pred cCCcEEEEEEecCCCCC-ceEEEEECCEEcc
Q psy7728 35 ENQEITLECLVKNAKPA-AKIVWYRGNTELK 64 (65)
Q Consensus 35 ~G~~~~L~C~~~~~~P~-~~i~W~~~~~~l~ 64 (65)
.+...+|.|.+.+..|. ..++|.|||+.+.
T Consensus 15 ~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~ 45 (96)
T cd07697 15 KQGQGIYLCLLENFFPDVIQVHWREGNSPSI 45 (96)
T ss_pred cCCCEEEEEEEEEEeCCCeEEEEEECCEECc
Confidence 35668999999998875 5699999999853
No 127
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.66 E-value=0.00012 Score=40.21 Aligned_cols=30 Identities=33% Similarity=0.749 Sum_probs=24.2
Q ss_pred eecCCcEEEEEEecCC-CCC-ceEEEEECCEE
Q psy7728 33 IRENQEITLECLVKNA-KPA-AKIVWYRGNTE 62 (65)
Q Consensus 33 ~~~G~~~~L~C~~~~~-~P~-~~i~W~~~~~~ 62 (65)
+..|+..+|+|.+.+. .|+ ..++|+|||+.
T Consensus 11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~ 42 (96)
T cd07696 11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGE 42 (96)
T ss_pred hccCCCeEEEEEEeCCCCCCCcEEEEEECCeE
Confidence 4557889999999999 654 67999999743
No 128
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=97.63 E-value=4.6e-05 Score=39.73 Aligned_cols=21 Identities=33% Similarity=0.781 Sum_probs=17.9
Q ss_pred EEEEEEecCCCCCceEEEEECC
Q psy7728 39 ITLECLVKNAKPAAKIVWYRGN 60 (65)
Q Consensus 39 ~~L~C~~~~~~P~~~i~W~~~~ 60 (65)
++|.|.+. |+|.|.|+|||++
T Consensus 1 v~l~C~~~-G~P~P~v~W~~~~ 21 (79)
T cd05734 1 VTLNCSAE-GYPPPTIVWKHSK 21 (79)
T ss_pred CEeEeeCe-EeCCCEEEEEECC
Confidence 47999985 5899999999974
No 129
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=97.58 E-value=0.00015 Score=38.50 Aligned_cols=25 Identities=20% Similarity=0.550 Sum_probs=21.9
Q ss_pred CCcEEEEEEecCCCCCceEEEEECCE
Q psy7728 36 NQEITLECLVKNAKPAAKIVWYRGNT 61 (65)
Q Consensus 36 G~~~~L~C~~~~~~P~~~i~W~~~~~ 61 (65)
|++++|+|.+.+ +|.+.+.|++.++
T Consensus 1 Ge~~~l~C~~~~-~~~~~~~W~~~~~ 25 (84)
T cd05861 1 GETITVNCIVQG-NEVVDFSWTYPGK 25 (84)
T ss_pred CCcEEEEEEEEC-CCccEEEEEECCc
Confidence 789999999965 7899999998775
No 130
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=97.57 E-value=0.00019 Score=38.88 Aligned_cols=28 Identities=32% Similarity=0.491 Sum_probs=23.5
Q ss_pred eEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728 30 KIEIRENQEITLECLVKNAKPAAKIVWYRG 59 (65)
Q Consensus 30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~ 59 (65)
.+...+|+.++|.|.. + .|.+.|+|||+
T Consensus 5 ~~~~~eG~~v~L~C~~-~-~p~p~v~Wykq 32 (91)
T cd05871 5 VVYGVENNSTFLECLP-K-SPQASVKWLFQ 32 (91)
T ss_pred EEEEecCCcEEEEEEC-C-CCCceEEEEEE
Confidence 3567899999999996 3 68899999984
No 131
>KOG4221|consensus
Probab=97.57 E-value=0.00021 Score=53.43 Aligned_cols=51 Identities=24% Similarity=0.569 Sum_probs=41.2
Q ss_pred CCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728 7 PRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63 (65)
Q Consensus 7 ~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l 63 (65)
..+.|+|++||.-+ ..+..+...++..+.+.|.+.+ +|.+.+.|||||..+
T Consensus 319 asaev~V~a~P~~~-----~~p~~l~A~e~~die~ec~~~g-~p~p~v~w~kNgd~~ 369 (1381)
T KOG4221|consen 319 ASAEVTVLAPPGFT-----KAPTTLVAHESMDIEFECPVSG-KPIPTVRWYKNGDRI 369 (1381)
T ss_pred cceEEEEEcCCCCC-----CCCcceeeeeccceeEeCCCCC-CCcceEEEEecCccc
Confidence 46899999998643 2334567888999999999955 699999999999765
No 132
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=97.56 E-value=0.00016 Score=39.15 Aligned_cols=32 Identities=22% Similarity=0.460 Sum_probs=27.2
Q ss_pred EEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728 31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
+.+..|+.+.|.|..++ +.|.+.|++||..+.
T Consensus 6 ~tv~~g~~v~L~C~~~s--~~A~v~W~~ng~~l~ 37 (85)
T cd05872 6 RTVAPGADVVLPCQLRS--NLASPVWLFNGTPLN 37 (85)
T ss_pred EEEecCCCEEEECCCCC--CCccEEEEECCcccC
Confidence 57899999999999854 477999999998763
No 133
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.51 E-value=0.00029 Score=38.84 Aligned_cols=29 Identities=24% Similarity=0.517 Sum_probs=24.5
Q ss_pred eEEeecCCcEEEEEEecCCCCCceEEEEECC
Q psy7728 30 KIEIRENQEITLECLVKNAKPAAKIVWYRGN 60 (65)
Q Consensus 30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~ 60 (65)
.+.+.+|++++|.|...+ +...+.|||..
T Consensus 7 ~~~v~~G~~v~l~C~~~~--~~~~v~Wykq~ 35 (110)
T cd05899 7 YLIKGRGQSVTLRCSQTS--GHDNMYWYRQD 35 (110)
T ss_pred ceEEcCCCcEEEEEEECC--CCCEEEEEEEC
Confidence 357899999999999865 67889999963
No 134
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=97.47 E-value=0.0005 Score=37.31 Aligned_cols=38 Identities=18% Similarity=0.377 Sum_probs=27.7
Q ss_pred cEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEE
Q psy7728 20 IEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTE 62 (65)
Q Consensus 20 ~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~ 62 (65)
|.|...+. ..+.+|++++|.|++.. +.-.+.|||+|..
T Consensus 2 P~l~a~p~---~vV~~G~~VTL~C~~~~--~~~~f~l~k~g~~ 39 (94)
T cd05711 2 PFLSAHPS---PVVPSGENVTLQCHSDI--RFDRFILYKEGRS 39 (94)
T ss_pred CEEEecCC---CccCCCCeEEEEEecCC--CCCEEEEEECCCC
Confidence 34544443 26789999999998743 5678999998853
No 135
>KOG4194|consensus
Probab=97.45 E-value=0.00021 Score=50.85 Aligned_cols=56 Identities=16% Similarity=0.386 Sum_probs=42.5
Q ss_pred cccCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728 3 SRYGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63 (65)
Q Consensus 3 ~~~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l 63 (65)
|+.+..+.|+|+.-|+. .+.- +...+..|+++.|.|.+.+.++.|.+.|||+++++
T Consensus 693 G~isanAtL~V~e~p~f-~~PL----~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pi 748 (873)
T KOG4194|consen 693 GQISANATLTVLETPSF-SIPL----EDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPI 748 (873)
T ss_pred cceeeceEEEEecCCcc-cccc----cceEEEecceEEEEEecCCCCCCccccccCCCCce
Confidence 56667799999988764 2221 22478889999999999665444999999999876
No 136
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.43 E-value=0.00032 Score=38.45 Aligned_cols=28 Identities=25% Similarity=0.623 Sum_probs=23.6
Q ss_pred cCCcEEEEEEecCCCCC-ceEEEEECCEE
Q psy7728 35 ENQEITLECLVKNAKPA-AKIVWYRGNTE 62 (65)
Q Consensus 35 ~G~~~~L~C~~~~~~P~-~~i~W~~~~~~ 62 (65)
.++.++|.|.+.+..|. ..|+|+|||++
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~ 43 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS 43 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE
Confidence 35668999999998886 56999999986
No 137
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.36 E-value=0.00063 Score=37.10 Aligned_cols=30 Identities=23% Similarity=0.607 Sum_probs=25.1
Q ss_pred eEEeecCCcEEEEEEecCCCCCceEEEEECC
Q psy7728 30 KIEIRENQEITLECLVKNAKPAAKIVWYRGN 60 (65)
Q Consensus 30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~ 60 (65)
.+.+.+|++++|.|..... +...+.|||..
T Consensus 7 ~v~~~~G~~v~L~C~~~~~-~~~~v~W~k~~ 36 (109)
T cd04983 7 SLSVQEGENVTLNCNYSTS-TFYYLFWYRQY 36 (109)
T ss_pred ceEEcCCCCEEEEEEECCC-CccEEEEEEEC
Confidence 3578999999999998654 78899999853
No 138
>KOG4194|consensus
Probab=97.35 E-value=0.00041 Score=49.45 Aligned_cols=54 Identities=24% Similarity=0.462 Sum_probs=44.2
Q ss_pred CcccCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCE
Q psy7728 2 LSRYGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNT 61 (65)
Q Consensus 2 ~~~~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~ 61 (65)
=|-|+..++|+|...|+-.. .++.+++..|+...|.|.+. |.|.|+|.|-|+|.
T Consensus 598 GStysqk~KltV~~~PsFtk-----tP~dltl~tg~mArl~CaAt-G~P~PeIawqkdgg 651 (873)
T KOG4194|consen 598 GSTYSQKAKLTVNQAPSFTK-----TPEDLTLRTGQMARLECAAT-GHPRPEIAWQKDGG 651 (873)
T ss_pred CcchhheeEEEeeccCcccc-----Ccccceeecccceeeeeecc-CCCCcceeehhcCC
Confidence 36688899999999986532 23457899999999999995 58999999999874
No 139
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.35 E-value=0.00065 Score=37.21 Aligned_cols=30 Identities=13% Similarity=0.520 Sum_probs=23.8
Q ss_pred eEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728 30 KIEIRENQEITLECLVKNAKPAAKIVWYRG 59 (65)
Q Consensus 30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~ 59 (65)
.+.+.+|++++|.|...+......+.|||.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq 38 (106)
T cd04980 9 TLSVSPGESATISCKASQSVSSNYLAWYQQ 38 (106)
T ss_pred cEEECCCCCEEEEEEECCCCCCCcEEEEEE
Confidence 357899999999999864333678999985
No 140
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=97.34 E-value=0.00068 Score=36.39 Aligned_cols=28 Identities=29% Similarity=0.584 Sum_probs=23.8
Q ss_pred eEEeecCCcEEEEEEecCCCCCceEEEEE
Q psy7728 30 KIEIRENQEITLECLVKNAKPAAKIVWYR 58 (65)
Q Consensus 30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~ 58 (65)
.+.+.+|++++|.|.+.+ .|.+.+.||+
T Consensus 6 ~~~v~~G~~v~L~C~~~~-~~~~~v~W~~ 33 (95)
T cd05717 6 DVTVVEGGTATLKCRVKN-NDNSSLQWSN 33 (95)
T ss_pred cEEEcCCCCEEEEEEECC-CCCceEEEeC
Confidence 357899999999999855 5788999986
No 141
>PHA03270 envelope glycoprotein C; Provisional
Probab=97.23 E-value=0.0008 Score=45.85 Aligned_cols=53 Identities=34% Similarity=0.661 Sum_probs=41.5
Q ss_pred ccCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCC--ceEEEEECCEEc
Q psy7728 4 RYGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPA--AKIVWYRGNTEL 63 (65)
Q Consensus 4 ~~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~--~~i~W~~~~~~l 63 (65)
+++..+.++.+-+|+. .+. .. ++.+|+....+|.+.+-.|+ ..++||+||.++
T Consensus 209 ~~~~~VtV~~yr~Psv-sv~--~~----PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V 263 (466)
T PHA03270 209 RYGTWTRVRMFRRPSL-SIR--PH----AVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEV 263 (466)
T ss_pred eeeeEEEEEEecCCcc-ccc--CC----ccccCCCceEEEEeeeecCCCceEEEEEeCCccc
Confidence 4556677777888863 332 33 68999999999999998887 469999999876
No 142
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.19 E-value=0.0014 Score=36.31 Aligned_cols=30 Identities=30% Similarity=0.592 Sum_probs=24.9
Q ss_pred eEEeecCCcEEEEEEecCC-CCCceEEEEEC
Q psy7728 30 KIEIRENQEITLECLVKNA-KPAAKIVWYRG 59 (65)
Q Consensus 30 ~~~~~~G~~~~L~C~~~~~-~P~~~i~W~~~ 59 (65)
.+.+.+|++++|.|...+. .+...+.|||.
T Consensus 7 ~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq 37 (116)
T cd04982 7 SITREESKSVTISCKVSGIDFSTTYIHWYRQ 37 (116)
T ss_pred eEEeCCCCCEEEEEEEeCCCccccEEEEEEE
Confidence 4578899999999998652 57889999995
No 143
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.15 E-value=0.001 Score=36.67 Aligned_cols=29 Identities=24% Similarity=0.527 Sum_probs=22.8
Q ss_pred EeecCCcEEEEEEecCCCCCceEEEEECC
Q psy7728 32 EIRENQEITLECLVKNAKPAAKIVWYRGN 60 (65)
Q Consensus 32 ~~~~G~~~~L~C~~~~~~P~~~i~W~~~~ 60 (65)
.+.+|++++|+|...+......+.|||..
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~ 30 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWR 30 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEEC
Confidence 57899999999988654445689999853
No 144
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=97.15 E-value=0.00092 Score=33.31 Aligned_cols=19 Identities=37% Similarity=0.943 Sum_probs=17.4
Q ss_pred EEEEEEecCCCCCceEEEE
Q psy7728 39 ITLECLVKNAKPAAKIVWY 57 (65)
Q Consensus 39 ~~L~C~~~~~~P~~~i~W~ 57 (65)
++|+|.+.++.|.+.++|+
T Consensus 18 ~~l~C~~~~~~~~~~~~W~ 36 (75)
T PF13927_consen 18 VTLTCSAEGGPPPPSISWY 36 (75)
T ss_dssp EEEEEEESSEESSEEEEEE
T ss_pred EEEEEEEccccCCeEEEEE
Confidence 9999999887669999999
No 145
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=97.05 E-value=0.00052 Score=37.81 Aligned_cols=33 Identities=15% Similarity=0.334 Sum_probs=25.6
Q ss_pred EeecCCcEEEEEEecC----CCCCceEEEEECCEEcc
Q psy7728 32 EIRENQEITLECLVKN----AKPAAKIVWYRGNTELK 64 (65)
Q Consensus 32 ~~~~G~~~~L~C~~~~----~~P~~~i~W~~~~~~l~ 64 (65)
.+..|....|+|.-.. .++.+.|+||||++++.
T Consensus 6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~ 42 (95)
T cd05897 6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLD 42 (95)
T ss_pred EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECc
Confidence 4677889999996321 35788999999999874
No 146
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.01 E-value=0.0024 Score=35.46 Aligned_cols=30 Identities=23% Similarity=0.595 Sum_probs=24.3
Q ss_pred eEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728 30 KIEIRENQEITLECLVKNAKPAAKIVWYRG 59 (65)
Q Consensus 30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~ 59 (65)
.+.+.+|+.++|.|..........+.|||.
T Consensus 8 ~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq 37 (116)
T cd07706 8 DVSVQVGEEVTLNCRYETSWTNYYIFWYKQ 37 (116)
T ss_pred ceEEcCCCCEEEEEEEeCCCCceEEEEEEE
Confidence 457899999999999765445678999994
No 147
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.99 E-value=0.0016 Score=35.02 Aligned_cols=29 Identities=28% Similarity=0.621 Sum_probs=23.4
Q ss_pred EeecCCcEEEEEEecCCCCCceEEEEECC
Q psy7728 32 EIRENQEITLECLVKNAKPAAKIVWYRGN 60 (65)
Q Consensus 32 ~~~~G~~~~L~C~~~~~~P~~~i~W~~~~ 60 (65)
.+.+|+.++|.|......+...+.|||..
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~ 30 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQK 30 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEEC
Confidence 46789999999998654367789999954
No 148
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=96.97 E-value=0.0022 Score=35.86 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=28.8
Q ss_pred CeEEeecCCcEEEEEEecCCCCCce-EEEEECCEEc
Q psy7728 29 SKIEIRENQEITLECLVKNAKPAAK-IVWYRGNTEL 63 (65)
Q Consensus 29 ~~~~~~~G~~~~L~C~~~~~~P~~~-i~W~~~~~~l 63 (65)
..+.+.+|+.+.|.|.. .+.|++. +.|.+++..+
T Consensus 11 ~~~~v~~gE~~~L~V~i-eAYP~p~~~~W~~~~~~l 45 (101)
T cd05860 11 TTIFVNAGENLDLIVEY-EAYPKPEHQQWIYMNRTL 45 (101)
T ss_pred ceEEEECCCCEEEEEEE-EeCCCCeeeEEEcCCccc
Confidence 34689999999999998 5689987 9999998754
No 149
>PHA03269 envelope glycoprotein C; Provisional
Probab=96.92 E-value=0.0023 Score=44.39 Aligned_cols=51 Identities=12% Similarity=0.291 Sum_probs=38.8
Q ss_pred CCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCC--ceEEEEECCEEcc
Q psy7728 7 PRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPA--AKIVWYRGNTELK 64 (65)
Q Consensus 7 ~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~--~~i~W~~~~~~l~ 64 (65)
..+.+.++-+|+ ..+. .. ++.+|+....+|.+.+-.|+ ..++||+||.++.
T Consensus 320 ~~VtV~~yr~Ps-VsV~--p~----PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~ 372 (566)
T PHA03269 320 HHITVMSYKRPN-ITVI--GD----PVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIG 372 (566)
T ss_pred eEEEEEEecCCC-cccc--CC----ccccCCCceEEEEeeeecCCCceEEEEEeCCcccC
Confidence 456677777883 3333 33 68999999999999988887 4699999988763
No 150
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.91 E-value=0.0016 Score=35.16 Aligned_cols=29 Identities=14% Similarity=0.483 Sum_probs=22.3
Q ss_pred EeecCCcEEEEEEecCC-CCCceEEEEECC
Q psy7728 32 EIRENQEITLECLVKNA-KPAAKIVWYRGN 60 (65)
Q Consensus 32 ~~~~G~~~~L~C~~~~~-~P~~~i~W~~~~ 60 (65)
.+.+|++++|.|..... .....|.|||..
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~ 31 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQK 31 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEEC
Confidence 47889999999987543 145679999953
No 151
>PHA03271 envelope glycoprotein C; Provisional
Probab=96.89 E-value=0.0031 Score=43.08 Aligned_cols=50 Identities=12% Similarity=0.375 Sum_probs=37.1
Q ss_pred EEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCC--ceEEEEECCEEcc
Q psy7728 9 TRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPA--AKIVWYRGNTELK 64 (65)
Q Consensus 9 ~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~--~~i~W~~~~~~l~ 64 (65)
+.+.|.+.|....+. +. ++.+|+....+|.+.+-.|+ ..++||+||.++.
T Consensus 239 ~~~~v~~RPPsVsV~--a~----PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~ 290 (490)
T PHA03271 239 IYIRVCQRPASVDVL--AP----PVLSGENYKASCIVRHFYPPGSVYVSWRQNGNIAT 290 (490)
T ss_pred EEEEEEecCCCcccc--CC----ccccCCCceEEEEeeeecCCCceEEEEEeCCcccc
Confidence 455566655443443 33 68999999999999998887 4699999998763
No 152
>KOG3513|consensus
Probab=96.89 E-value=0.003 Score=46.95 Aligned_cols=54 Identities=22% Similarity=0.332 Sum_probs=37.9
Q ss_pred cccCCCEEEEEE-------cCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCE
Q psy7728 3 SRYGPRTRLYQF-------APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNT 61 (65)
Q Consensus 3 ~~~~~~~~L~V~-------~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~ 61 (65)
+.++..+.|.|. .+|. |.... +.......|+.+.|.|.+. |+|.|+|.|.|.|.
T Consensus 220 ~v~~~~~~L~~~~~~~~~~~~P~---i~~~~-p~~~~a~~G~~v~LECfA~-G~P~P~i~W~k~~g 280 (1051)
T KOG3513|consen 220 IVQGPPFPLIVRSNNVMREYAPK---ILVPF-PETETALKGQSVKLECFAL-GNPTPQIKWRKVDG 280 (1051)
T ss_pred cccCCceeEEEcccccccccCCc---cccCC-CCcccccCCCeEEEEEEec-CCCCCcEEEEeCCC
Confidence 346677777772 3443 22111 1245788999999999994 58999999999875
No 153
>PHA03273 envelope glycoprotein C; Provisional
Probab=96.86 E-value=0.0032 Score=43.31 Aligned_cols=49 Identities=16% Similarity=0.421 Sum_probs=36.8
Q ss_pred EEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCC--ceEEEEECCEEcc
Q psy7728 9 TRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPA--AKIVWYRGNTELK 64 (65)
Q Consensus 9 ~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~--~~i~W~~~~~~l~ 64 (65)
+.+..+-+|+. .+ .+. ++.+|+....+|.+.+-.|+ ..++||+||.++.
T Consensus 230 VtV~~yr~Psv-sv--~~~----PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~ 280 (486)
T PHA03273 230 VTVSTYNAPLV-DL--SVH----PSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVD 280 (486)
T ss_pred EEEEEecCCcc-cc--cCC----ccccCCCceEEEEeeeecCCCceEEEEEeCCeecc
Confidence 33444667752 33 333 68999999999999988887 5699999999864
No 154
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.83 E-value=0.0023 Score=35.55 Aligned_cols=29 Identities=17% Similarity=0.415 Sum_probs=24.1
Q ss_pred ecCCcEEEEEEecCCC-CC-ceEEEEECCEE
Q psy7728 34 RENQEITLECLVKNAK-PA-AKIVWYRGNTE 62 (65)
Q Consensus 34 ~~G~~~~L~C~~~~~~-P~-~~i~W~~~~~~ 62 (65)
..+..++|+|.+.+.. |. ..++|+++|+.
T Consensus 17 ~~~~~atLtClV~~f~~P~~i~V~W~~~g~~ 47 (99)
T cd04986 17 LLGSSASLTCTLSGLRDPEGAVFTWTPSGGK 47 (99)
T ss_pred CcCCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence 3567889999999988 74 67999999874
No 155
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.82 E-value=0.00091 Score=34.72 Aligned_cols=28 Identities=14% Similarity=0.357 Sum_probs=20.8
Q ss_pred ecCCcEEEEEEecCCCCCceEEEEECCEEccC
Q psy7728 34 RENQEITLECLVKNAKPAAKIVWYRGNTELKL 65 (65)
Q Consensus 34 ~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~~ 65 (65)
..|.+|+|+|-... ..|.|++|++.+.|
T Consensus 5 isGTtVtlTCP~~~----~~i~W~~n~~~~~g 32 (65)
T cd07692 5 ISGTTVTVTCPLSG----DDIKWKKNDQVSQG 32 (65)
T ss_pred EeccEEEEECCCCC----CCceEEeCCccCCC
Confidence 35889999996532 23999999877654
No 156
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=96.75 E-value=0.0028 Score=34.67 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=23.9
Q ss_pred EeecCCcEEEEEEecC-CCCCceEEEEECCE
Q psy7728 32 EIRENQEITLECLVKN-AKPAAKIVWYRGNT 61 (65)
Q Consensus 32 ~~~~G~~~~L~C~~~~-~~P~~~i~W~~~~~ 61 (65)
.+..|+.++|+|.+.. +.|.+.|+|+--+.
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n 40 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGN 40 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCccEEEeCCCC
Confidence 5788999999999954 46677999997543
No 157
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=96.61 E-value=0.0049 Score=33.12 Aligned_cols=30 Identities=10% Similarity=0.217 Sum_probs=24.2
Q ss_pred EEeecCCcEEEEEEecCCCCCceEEEEECC
Q psy7728 31 IEIRENQEITLECLVKNAKPAAKIVWYRGN 60 (65)
Q Consensus 31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~ 60 (65)
+.+.+|++++|.|..........+.|||..
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~ 31 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWG 31 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCC
Confidence 467899999999987554567789999974
No 158
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=96.53 E-value=0.0045 Score=34.81 Aligned_cols=32 Identities=13% Similarity=0.482 Sum_probs=23.3
Q ss_pred eEEeecCCcEEEEEEecC----------CCCCceEEEEECCE
Q psy7728 30 KIEIRENQEITLECLVKN----------AKPAAKIVWYRGNT 61 (65)
Q Consensus 30 ~~~~~~G~~~~L~C~~~~----------~~P~~~i~W~~~~~ 61 (65)
...+.+|+.+.|.|-.-. ..+..+|+|||++.
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~ 50 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSG 50 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCC
Confidence 357899999999997511 11245899999964
No 159
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=96.52 E-value=0.0084 Score=32.94 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=23.6
Q ss_pred EEeecCCcEEEEEEecCCCCCceEEEEECCE
Q psy7728 31 IEIRENQEITLECLVKNAKPAAKIVWYRGNT 61 (65)
Q Consensus 31 ~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~ 61 (65)
+.+.+|++++|+|.+.+. ....+.||+-++
T Consensus 7 vtv~~G~ta~L~C~v~~~-~~~~v~w~~~~~ 36 (95)
T cd05881 7 VTVVEGEVAIISCRVKNN-DDSVIQLLNPNR 36 (95)
T ss_pred eEEcCCCcEEEEEEEccC-CccEEEEEecCC
Confidence 578999999999999764 456678887653
No 160
>KOG3515|consensus
Probab=96.50 E-value=0.002 Score=46.42 Aligned_cols=47 Identities=28% Similarity=0.550 Sum_probs=35.1
Q ss_pred cCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63 (65)
Q Consensus 15 ~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l 63 (65)
.+..++.+.+.+. .-.+.+|+.+.|.|.+.+++|.++++||++.+..
T Consensus 202 ~~~~~~~~~~~~~--~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~ 248 (741)
T KOG3515|consen 202 APCKGIGITGAQE--QQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQ 248 (741)
T ss_pred cccccceecchhh--cCcccccceEEEEehhhcCCcchhhhhccccccc
Confidence 3444444443322 1368899999999999999999999999998764
No 161
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.43 E-value=0.0073 Score=28.40 Aligned_cols=24 Identities=33% Similarity=0.814 Sum_probs=20.1
Q ss_pred EEEEEEecCCCCCceEEEEECCEEc
Q psy7728 39 ITLECLVKNAKPAAKIVWYRGNTEL 63 (65)
Q Consensus 39 ~~L~C~~~~~~P~~~i~W~~~~~~l 63 (65)
++|.|.+.+ .|...+.|++++...
T Consensus 1 ~~l~C~~~~-~~~~~~~W~~~~~~~ 24 (74)
T cd00096 1 VTLTCLASG-PPPPTITWLKNGKPL 24 (74)
T ss_pred CEEEEEecC-CCCCcEEEEECCEEC
Confidence 378999977 789999999998653
No 162
>PHA02785 IL-beta-binding protein; Provisional
Probab=96.37 E-value=0.0035 Score=40.87 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=25.1
Q ss_pred EeecCCcEEEEEEec----CCCCCceEEEEECCE
Q psy7728 32 EIRENQEITLECLVK----NAKPAAKIVWYRGNT 61 (65)
Q Consensus 32 ~~~~G~~~~L~C~~~----~~~P~~~i~W~~~~~ 61 (65)
...+|+.+.|.|... .+.|.++|+|||+|.
T Consensus 37 ~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~ 70 (326)
T PHA02785 37 MELENEPVILPCPQINTLSSGYNILDILWEKRGA 70 (326)
T ss_pred hhhcCCCEEEECCCccccccCCCCceEEEEECCC
Confidence 467899999999862 567899999999975
No 163
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=96.37 E-value=0.0052 Score=34.19 Aligned_cols=19 Identities=26% Similarity=0.662 Sum_probs=16.9
Q ss_pred EEEEEecCCCCCceEEEEE
Q psy7728 40 TLECLVKNAKPAAKIVWYR 58 (65)
Q Consensus 40 ~L~C~~~~~~P~~~i~W~~ 58 (65)
...|.+.+|+|++.|+|.-
T Consensus 24 VA~CiSa~GrPpa~ItW~t 42 (98)
T cd05890 24 VATCVSANGKPPSVVRWDT 42 (98)
T ss_pred EEEEEcCCCcCCcEeEEEc
Confidence 3599999999999999974
No 164
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=96.34 E-value=0.014 Score=32.51 Aligned_cols=30 Identities=13% Similarity=0.473 Sum_probs=22.1
Q ss_pred eEEeecCCcEEEEEEecCCCC---CceEEEEEC
Q psy7728 30 KIEIRENQEITLECLVKNAKP---AAKIVWYRG 59 (65)
Q Consensus 30 ~~~~~~G~~~~L~C~~~~~~P---~~~i~W~~~ 59 (65)
.+.+.+|+.++|.|......+ ...|.||+.
T Consensus 7 ~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~ 39 (116)
T cd05715 7 EVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQ 39 (116)
T ss_pred eEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEe
Confidence 357889999999998754332 246999873
No 165
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=96.23 E-value=0.05 Score=29.06 Aligned_cols=45 Identities=22% Similarity=0.380 Sum_probs=25.2
Q ss_pred EEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728 10 RLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63 (65)
Q Consensus 10 ~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l 63 (65)
.|.+..|+....+...+. ..+.. .|.+.+.++.+ .+.||.||+.+
T Consensus 10 ~l~I~~P~~g~~~~~~~~-----~~~~~--~l~l~a~~~~~--~~~W~vdg~~~ 54 (89)
T PF06832_consen 10 PLRITSPPDGAVLALDPG-----IPERQ--PLVLKAAGGRG--PVYWFVDGEPL 54 (89)
T ss_pred CCEEEecCCCCEEEeCCC-----CCccc--eEEEEEeCCCC--cEEEEECCEEc
Confidence 455666665544432221 01234 44445545533 99999999987
No 166
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=96.21 E-value=0.013 Score=36.10 Aligned_cols=32 Identities=22% Similarity=0.484 Sum_probs=25.9
Q ss_pred eEEeecCCcEEEEEEecCCCCCceEEEEECCE
Q psy7728 30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNT 61 (65)
Q Consensus 30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~ 61 (65)
.+.+.+|++++|.|.-..+.....++|+|..+
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~ 55 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNK 55 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCC
Confidence 35789999999999975455678899999753
No 167
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=96.21 E-value=0.0062 Score=32.06 Aligned_cols=25 Identities=24% Similarity=0.538 Sum_probs=20.6
Q ss_pred CCcEEEEEEecCCCCCceEEEEECCE
Q psy7728 36 NQEITLECLVKNAKPAAKIVWYRGNT 61 (65)
Q Consensus 36 G~~~~L~C~~~~~~P~~~i~W~~~~~ 61 (65)
|++++|.|.... .+...|.||++..
T Consensus 1 G~~VtL~c~~~~-~~~~~i~W~~~~~ 25 (92)
T cd05741 1 GESVTLPVSNLP-ENLQEITWYKGKD 25 (92)
T ss_pred CCcEEEEcccCC-CCCEEEEEECCCC
Confidence 789999998765 5677999999864
No 168
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=96.19 E-value=0.012 Score=31.33 Aligned_cols=27 Identities=11% Similarity=0.407 Sum_probs=21.4
Q ss_pred CCcEEEEEEecCC-CCCceEEEEECCEE
Q psy7728 36 NQEITLECLVKNA-KPAAKIVWYRGNTE 62 (65)
Q Consensus 36 G~~~~L~C~~~~~-~P~~~i~W~~~~~~ 62 (65)
|++++|+|.+.+. .|...+.|...++.
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~ 28 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKK 28 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcc
Confidence 7889999999743 56678999987753
No 169
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=96.07 E-value=0.021 Score=32.05 Aligned_cols=29 Identities=17% Similarity=0.367 Sum_probs=22.3
Q ss_pred EEeecCCcEEEEEEecCCC-CCceEEEEEC
Q psy7728 31 IEIRENQEITLECLVKNAK-PAAKIVWYRG 59 (65)
Q Consensus 31 ~~~~~G~~~~L~C~~~~~~-P~~~i~W~~~ 59 (65)
+.+.+|++++|.|...+.. -...+.|||.
T Consensus 7 ~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ 36 (117)
T cd04981 7 GLVKPGQSLKLSCKASGFTFTSYGVNWVRQ 36 (117)
T ss_pred eEEcCCCCEEEEEEEeCCCcccceEEEEEE
Confidence 5789999999999875432 2456999995
No 170
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=96.00 E-value=0.022 Score=30.41 Aligned_cols=30 Identities=23% Similarity=0.670 Sum_probs=24.0
Q ss_pred eEEeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728 30 KIEIRENQEITLECLVKNAKPAAKIVWYRG 59 (65)
Q Consensus 30 ~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~ 59 (65)
.+.+.+|++++|.|..........+.||+.
T Consensus 10 ~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~ 39 (114)
T PF07686_consen 10 PVTVQEGESVTLPCSYSSSSNQSSVYWYRQ 39 (114)
T ss_dssp EEEEETTSEEEEEEEEESSSSGSEEEEEEE
T ss_pred eEEEecCCCEEEEEEEeCCCCcceEEEEEE
Confidence 357899999999999872235678999994
No 171
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=96.00 E-value=0.015 Score=31.96 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=21.5
Q ss_pred EeecCCcEEEEEEecCCCCCceEEEEECC
Q psy7728 32 EIRENQEITLECLVKNAKPAAKIVWYRGN 60 (65)
Q Consensus 32 ~~~~G~~~~L~C~~~~~~P~~~i~W~~~~ 60 (65)
.+.+|+.++|+|..... -...+.|||..
T Consensus 2 ~v~~G~~vtL~C~~~~~-~~~~v~Wyrq~ 29 (104)
T cd05720 2 DAELGQKVELKCEVLNS-SPTGCSWLFQP 29 (104)
T ss_pred cccCCCeEEEEEEecCC-CCCcEEEEEeC
Confidence 36789999999987543 34569999964
No 172
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=95.95 E-value=0.028 Score=31.43 Aligned_cols=29 Identities=21% Similarity=0.554 Sum_probs=21.5
Q ss_pred eEEeecCCcEEEEEEecCCCC---CceEEEEE
Q psy7728 30 KIEIRENQEITLECLVKNAKP---AAKIVWYR 58 (65)
Q Consensus 30 ~~~~~~G~~~~L~C~~~~~~P---~~~i~W~~ 58 (65)
.+.+.+|+.++|.|.-....+ ...|.||+
T Consensus 7 ~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~ 38 (115)
T cd05880 7 EVEAVNGTDVRLKCTFSSSAPIGDTLVITWNF 38 (115)
T ss_pred eEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEE
Confidence 467899999999998644322 23699985
No 173
>KOG4222|consensus
Probab=95.92 E-value=0.016 Score=43.64 Aligned_cols=56 Identities=16% Similarity=0.343 Sum_probs=41.8
Q ss_pred CCcccCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEE
Q psy7728 1 MLSRYGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTE 62 (65)
Q Consensus 1 ~~~~~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~ 62 (65)
+++..+..+.|+|.+||+-..=. ... .+.-|..++|.|.+.+ +|++.+.|.|.|..
T Consensus 300 ~vG~l~asa~ltV~apP~f~kkp-~dq----~v~lg~~vt~pc~~~g-nP~PavfW~keg~q 355 (1281)
T KOG4222|consen 300 LVGGLEASATLTVQAPPSFGKKP-RDQ----KVALGGTVTFPCETLG-NPPPAVFWLKEGSQ 355 (1281)
T ss_pred cccccccccceEEecCccccccc-Ccc----ccccCceEEeeeecCC-CCCcceEEeccCcc
Confidence 45667788999999999743211 111 4566889999999964 79999999998754
No 174
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=95.89 E-value=0.019 Score=31.18 Aligned_cols=26 Identities=15% Similarity=0.387 Sum_probs=19.1
Q ss_pred cCCcEEEEEEecCC-----CCCceEEEEECC
Q psy7728 35 ENQEITLECLVKNA-----KPAAKIVWYRGN 60 (65)
Q Consensus 35 ~G~~~~L~C~~~~~-----~P~~~i~W~~~~ 60 (65)
.|++++|.|..... .....|.|||..
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~ 31 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLE 31 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEec
Confidence 48999999986543 234579999964
No 175
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=95.88 E-value=0.022 Score=31.71 Aligned_cols=27 Identities=19% Similarity=0.432 Sum_probs=20.8
Q ss_pred EeecCCcEEEEEEecCCCCCceEEEEEC
Q psy7728 32 EIRENQEITLECLVKNAKPAAKIVWYRG 59 (65)
Q Consensus 32 ~~~~G~~~~L~C~~~~~~P~~~i~W~~~ 59 (65)
.+.+|+.+.|.|.-.. .+...|+|||+
T Consensus 9 ~~~~G~~V~L~v~~~p-~~~~~~~W~kg 35 (105)
T cd05774 9 QVAEGENVLLLVHNLP-ENLLAYAWYKG 35 (105)
T ss_pred cccCCCCEEEEecCCC-CCceEEEEEcC
Confidence 5788999999997522 34458999997
No 176
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=95.76 E-value=0.02 Score=35.89 Aligned_cols=33 Identities=15% Similarity=0.328 Sum_probs=25.5
Q ss_pred eEEeecCCcEEEEEEecCCC----------CCceEEEEECCEE
Q psy7728 30 KIEIRENQEITLECLVKNAK----------PAAKIVWYRGNTE 62 (65)
Q Consensus 30 ~~~~~~G~~~~L~C~~~~~~----------P~~~i~W~~~~~~ 62 (65)
.+.+.+|+++.|.|.+.+.. ....+.|+|++..
T Consensus 31 ~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~ 73 (227)
T PHA02826 31 PVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSL 73 (227)
T ss_pred eEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeE
Confidence 35789999999999985521 2458999999854
No 177
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=95.45 E-value=0.014 Score=31.65 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=20.6
Q ss_pred cCCcEEEEEEecCCCCCceEEEEECCE
Q psy7728 35 ENQEITLECLVKNAKPAAKIVWYRGNT 61 (65)
Q Consensus 35 ~G~~~~L~C~~~~~~P~~~i~W~~~~~ 61 (65)
.|++|+|.|..........|.||++..
T Consensus 3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~ 29 (97)
T cd05775 3 LGGSVTLPLNIPDGTEIESITWSFNTS 29 (97)
T ss_pred cCCeEEEeCCCCCCcEEEEEEEecCCE
Confidence 589999999775434567899998753
No 178
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=95.02 E-value=0.1 Score=29.15 Aligned_cols=32 Identities=16% Similarity=0.547 Sum_probs=22.6
Q ss_pred CeEEeecCCcEEEEEEecCCC----C-CceEEEEECC
Q psy7728 29 SKIEIRENQEITLECLVKNAK----P-AAKIVWYRGN 60 (65)
Q Consensus 29 ~~~~~~~G~~~~L~C~~~~~~----P-~~~i~W~~~~ 60 (65)
..+.+.+|+.++|.|.-.... + ...+.|||..
T Consensus 7 ~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~ 43 (119)
T cd05712 7 KSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGH 43 (119)
T ss_pred CEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCC
Confidence 346789999999999643221 1 3569999964
No 179
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=94.83 E-value=0.039 Score=29.29 Aligned_cols=24 Identities=21% Similarity=0.527 Sum_probs=17.7
Q ss_pred CcEEEEEEecCCC--CCceEEEEECC
Q psy7728 37 QEITLECLVKNAK--PAAKIVWYRGN 60 (65)
Q Consensus 37 ~~~~L~C~~~~~~--P~~~i~W~~~~ 60 (65)
++++|.|...... ....|.|||..
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~ 26 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKIT 26 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeEC
Confidence 4689999876543 34579999964
No 180
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=94.73 E-value=0.059 Score=28.98 Aligned_cols=24 Identities=17% Similarity=0.455 Sum_probs=17.5
Q ss_pred CCcEEEEEEecCCCCCceEEEEEC
Q psy7728 36 NQEITLECLVKNAKPAAKIVWYRG 59 (65)
Q Consensus 36 G~~~~L~C~~~~~~P~~~i~W~~~ 59 (65)
|++++|.|.-......-.|.|+|.
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~ 24 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKI 24 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEc
Confidence 788999998543333347999985
No 181
>KOG4222|consensus
Probab=94.33 E-value=0.047 Score=41.33 Aligned_cols=56 Identities=14% Similarity=0.285 Sum_probs=43.4
Q ss_pred cCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEECCEEcc
Q psy7728 5 YGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 5 ~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
+++.+.|.|.+-+++-.+.... +.+..|+.+.|.|.-..+.|.+.++|.|+|+++.
T Consensus 119 vSr~a~L~vavlrddfrv~prd----~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~ 174 (1281)
T KOG4222|consen 119 VSRGASLIVAVLRDDFRVSPRD----VQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLD 174 (1281)
T ss_pred eecCceEEEEEechhcccCccc----ccccccceeEEeccCCCCCCCCcceeecCCCccc
Confidence 3556778887777665443222 4678899999999999999999999999998863
No 182
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=94.29 E-value=0.11 Score=28.22 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=18.8
Q ss_pred CCcEEEEEEecCCC-----CCceEEEEEC
Q psy7728 36 NQEITLECLVKNAK-----PAAKIVWYRG 59 (65)
Q Consensus 36 G~~~~L~C~~~~~~-----P~~~i~W~~~ 59 (65)
|+.++|.|.-.... -...|.|+|.
T Consensus 2 G~~V~L~C~~~~~~~~~~~~~~~i~W~k~ 30 (106)
T cd05714 2 GGNVTLPCRFHLEPALSAPHGPRIKWTKL 30 (106)
T ss_pred CCCEEEeEEeECCcccCCCCCcEEEEEEe
Confidence 88999999875432 2568999997
No 183
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=94.12 E-value=0.055 Score=28.37 Aligned_cols=19 Identities=32% Similarity=0.728 Sum_probs=14.6
Q ss_pred CcEEEEEEecCCCCCceEEEEECC
Q psy7728 37 QEITLECLVKNAKPAAKIVWYRGN 60 (65)
Q Consensus 37 ~~~~L~C~~~~~~P~~~i~W~~~~ 60 (65)
+.|.|+|.+ ..+|+||++.
T Consensus 7 ~~V~L~C~~-----~tsi~W~kG~ 25 (69)
T cd07691 7 GKVFLKCNG-----ATNITWKKGK 25 (69)
T ss_pred ceEEEEecC-----CCcEEEecCc
Confidence 568999965 3679999943
No 184
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=94.10 E-value=0.11 Score=29.19 Aligned_cols=24 Identities=13% Similarity=0.409 Sum_probs=18.5
Q ss_pred CCcEEEEEEecCCCC-----------CceEEEEEC
Q psy7728 36 NQEITLECLVKNAKP-----------AAKIVWYRG 59 (65)
Q Consensus 36 G~~~~L~C~~~~~~P-----------~~~i~W~~~ 59 (65)
|++++|.|.-....+ ...|.|||.
T Consensus 2 G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~ 36 (112)
T cd05900 2 GSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFI 36 (112)
T ss_pred CCcEEEeeEEeCCcCccccccccCCCCCEEEEEEe
Confidence 889999998765432 358999984
No 185
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=94.10 E-value=0.12 Score=28.71 Aligned_cols=24 Identities=17% Similarity=0.450 Sum_probs=18.4
Q ss_pred CCcEEEEEEecCCCC---------CceEEEEEC
Q psy7728 36 NQEITLECLVKNAKP---------AAKIVWYRG 59 (65)
Q Consensus 36 G~~~~L~C~~~~~~P---------~~~i~W~~~ 59 (65)
|+.++|.|.-....+ ...|.|||.
T Consensus 2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~ 34 (110)
T cd05878 2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKL 34 (110)
T ss_pred CCCEEEeeEeeCCccccccccCCCCCEEEEEEe
Confidence 789999998865432 367999995
No 186
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=93.85 E-value=0.17 Score=27.03 Aligned_cols=25 Identities=20% Similarity=0.610 Sum_probs=16.9
Q ss_pred CCcEEEEEEecCCCCC--ceEEEEECC
Q psy7728 36 NQEITLECLVKNAKPA--AKIVWYRGN 60 (65)
Q Consensus 36 G~~~~L~C~~~~~~P~--~~i~W~~~~ 60 (65)
|++++|.|........ ..|.|||..
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~ 27 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQ 27 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECC
Confidence 6889999987533221 358898864
No 187
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=93.60 E-value=0.28 Score=27.67 Aligned_cols=26 Identities=15% Similarity=0.381 Sum_probs=20.3
Q ss_pred EEeecCCcEEEEEEecCCC---CCceEEE
Q psy7728 31 IEIRENQEITLECLVKNAK---PAAKIVW 56 (65)
Q Consensus 31 ~~~~~G~~~~L~C~~~~~~---P~~~i~W 56 (65)
+.+..|+.++|.|.-.... +..+|+|
T Consensus 8 v~a~~G~~v~L~C~f~~~~~~~~~~~v~W 36 (116)
T cd05879 8 VYGTVGSDVTLSCSFWSSEWISDDISFTW 36 (116)
T ss_pred EEEEcCCcEEEEEEEecCCCCCCcEEEEE
Confidence 4678899999999986532 3468999
No 188
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=93.00 E-value=0.36 Score=27.59 Aligned_cols=29 Identities=14% Similarity=0.174 Sum_probs=22.1
Q ss_pred EEeecCCcEEEEEEecCC-CCC-ceEEEEEC
Q psy7728 31 IEIRENQEITLECLVKNA-KPA-AKIVWYRG 59 (65)
Q Consensus 31 ~~~~~G~~~~L~C~~~~~-~P~-~~i~W~~~ 59 (65)
+.+..|..++|+|...+. ... -.++|+|+
T Consensus 8 ~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq 38 (115)
T cd05721 8 VLASSNGAASLVCEYTYNGFSKEFRASLLKG 38 (115)
T ss_pred eEEcCCCCEEEEEEecCCccccEEEEEEEEe
Confidence 467788899999998663 333 47999986
No 189
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=92.43 E-value=0.68 Score=25.11 Aligned_cols=33 Identities=21% Similarity=0.463 Sum_probs=24.5
Q ss_pred EeecCCcEEEEEEecCCC----CCceEEEEECCEEcc
Q psy7728 32 EIRENQEITLECLVKNAK----PAAKIVWYRGNTELK 64 (65)
Q Consensus 32 ~~~~G~~~~L~C~~~~~~----P~~~i~W~~~~~~l~ 64 (65)
.+.-|++++.+|....+- .+..|-|..|+..+.
T Consensus 14 vv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP 50 (89)
T PF06328_consen 14 VVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIP 50 (89)
T ss_dssp EEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCEST
T ss_pred EEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECC
Confidence 467899999999988653 567899999887653
No 190
>PHA03052 Hypothetical protein; Provisional
Probab=91.93 E-value=0.81 Score=23.96 Aligned_cols=33 Identities=21% Similarity=0.414 Sum_probs=26.1
Q ss_pred EEeecCCcEEEEEEecCCCC--CceEEEEECCEEc
Q psy7728 31 IEIRENQEITLECLVKNAKP--AAKIVWYRGNTEL 63 (65)
Q Consensus 31 ~~~~~G~~~~L~C~~~~~~P--~~~i~W~~~~~~l 63 (65)
+.+.-|+.+++.|.+.-++| .+.+.|--|+..+
T Consensus 7 i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 7 IVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY 41 (69)
T ss_pred EEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence 56778999999999986654 4678898888665
No 191
>smart00406 IGv Immunoglobulin V-Type.
Probab=91.83 E-value=0.37 Score=24.09 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=16.1
Q ss_pred cEEEEEEecCCCCC-ceEEEEECC
Q psy7728 38 EITLECLVKNAKPA-AKIVWYRGN 60 (65)
Q Consensus 38 ~~~L~C~~~~~~P~-~~i~W~~~~ 60 (65)
+++|.|........ ..+.||+..
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~ 24 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQP 24 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeC
Confidence 47899988654322 479999964
No 192
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=91.19 E-value=0.23 Score=33.17 Aligned_cols=22 Identities=27% Similarity=0.626 Sum_probs=19.5
Q ss_pred cEEEEEEecCCCCCc-eEEEEEC
Q psy7728 38 EITLECLVKNAKPAA-KIVWYRG 59 (65)
Q Consensus 38 ~~~L~C~~~~~~P~~-~i~W~~~ 59 (65)
.++|+|.+.+..|.. .|+|.||
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 579999999999874 6999999
No 193
>PF09085 Adhes-Ig_like: Adhesion molecule, immunoglobulin-like; InterPro: IPR015169 This domain is found in mucosal vascular addressin cell adhesion molecule 1 proteins (MAdCAM-1). These are cell adhesion molecules expressed on the endothelium in mucosa that guide the specific homing of lymphocytes into mucosal tissues. MAdCAM-1 belongs to a subclass of the immunoglobulin superfamily (IgSF), the members of which are ligands for integrins []. The crystal structure of this domain has been reported; it adopts an immunoglobulin-like beta-sandwich structure, with seven strands arranged in two beta-sheets in a Greek-key topology [, ].; GO: 0007155 cell adhesion, 0016020 membrane; PDB: 1GSM_A 1BQS_A.
Probab=90.58 E-value=0.33 Score=27.26 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=22.9
Q ss_pred EeecCCcEEEEEEecCCCCC----ceEEEEECCEEccC
Q psy7728 32 EIRENQEITLECLVKNAKPA----AKIVWYRGNTELKL 65 (65)
Q Consensus 32 ~~~~G~~~~L~C~~~~~~P~----~~i~W~~~~~~l~~ 65 (65)
.+..|...++.|++.+-.|+ -+++|+.+++++.|
T Consensus 12 ~LVpg~dqevaCTAhnVtP~~p~~LSfslllGdqeLeg 49 (110)
T PF09085_consen 12 ALVPGRDQEVACTAHNVTPADPDALSFSLLLGDQELEG 49 (110)
T ss_dssp SB-TT--SEEEEEEEEEB--STTTEEEEEEETTEE-TT
T ss_pred HhccCCCceeeeeeccccCCCCCeEEeeeeeCceeecc
Confidence 46788888999998765553 36999999999876
No 194
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=89.74 E-value=0.19 Score=26.26 Aligned_cols=21 Identities=43% Similarity=0.828 Sum_probs=14.9
Q ss_pred EEEEEecCCCCCceEEEEECCEEc
Q psy7728 40 TLECLVKNAKPAAKIVWYRGNTEL 63 (65)
Q Consensus 40 ~L~C~~~~~~P~~~i~W~~~~~~l 63 (65)
+|+|-+..+-| |+||-||..+
T Consensus 2 tltC~s~~sLP---iswYcN~TRL 22 (71)
T PF11049_consen 2 TLTCPSNASLP---ISWYCNGTRL 22 (71)
T ss_pred ceecCCCCCCc---ccEEECCcee
Confidence 68887754444 7899988654
No 195
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=88.05 E-value=0.93 Score=24.77 Aligned_cols=23 Identities=17% Similarity=0.557 Sum_probs=18.0
Q ss_pred CcEEEEEEecCCCCCceEEEEEC
Q psy7728 37 QEITLECLVKNAKPAAKIVWYRG 59 (65)
Q Consensus 37 ~~~~L~C~~~~~~P~~~i~W~~~ 59 (65)
+.++|.|.........+++|.|-
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~ 23 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKH 23 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEc
Confidence 36899999865556788999985
No 196
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=86.51 E-value=1.3 Score=24.19 Aligned_cols=23 Identities=17% Similarity=0.495 Sum_probs=17.7
Q ss_pred CcEEEEEEecCCCCCceEEEEEC
Q psy7728 37 QEITLECLVKNAKPAAKIVWYRG 59 (65)
Q Consensus 37 ~~~~L~C~~~~~~P~~~i~W~~~ 59 (65)
++++|.|+-.......+++|.|-
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~ 23 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKI 23 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEc
Confidence 46899999865556678999884
No 197
>PHA03112 IL-18 binding protein; Provisional
Probab=85.22 E-value=2 Score=25.50 Aligned_cols=30 Identities=30% Similarity=0.582 Sum_probs=24.2
Q ss_pred EEeecCCcEEEEEEecCCCCC-ceEEEEECC
Q psy7728 31 IEIRENQEITLECLVKNAKPA-AKIVWYRGN 60 (65)
Q Consensus 31 ~~~~~G~~~~L~C~~~~~~P~-~~i~W~~~~ 60 (65)
++..+++++.|+|.+.+-.|. .-+-|.+++
T Consensus 33 vp~k~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 33 IPTKETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred cccCCCCEEEEEEECccCCCCceEEEEEcCC
Confidence 356789999999999855576 779999776
No 198
>KOG1480|consensus
Probab=83.84 E-value=0.29 Score=36.05 Aligned_cols=32 Identities=22% Similarity=0.613 Sum_probs=28.2
Q ss_pred EeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728 32 EIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63 (65)
Q Consensus 32 ~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l 63 (65)
.+.++..+.|.|+...+.|++.+.||+|+..+
T Consensus 140 ~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~ 171 (909)
T KOG1480|consen 140 EVQEETTLQLPCRPPEGDPKAEVEWLKNEVVI 171 (909)
T ss_pred eecccccccccccCcccchhhhhhccccCCCC
Confidence 57778889999999999999999999998654
No 199
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=83.10 E-value=1.9 Score=22.11 Aligned_cols=20 Identities=25% Similarity=0.707 Sum_probs=13.8
Q ss_pred eecCCcEEEEEEecCCCCCceEEEE
Q psy7728 33 IRENQEITLECLVKNAKPAAKIVWY 57 (65)
Q Consensus 33 ~~~G~~~~L~C~~~~~~P~~~i~W~ 57 (65)
+..|++++|. |.|...++||
T Consensus 2 v~~G~N~TL~-----Gp~~~~V~Wy 21 (63)
T PF02440_consen 2 VTVGSNVTLV-----GPPDGPVTWY 21 (63)
T ss_pred EeEcCcEEEe-----CCCCCceEEE
Confidence 3567888883 3456779998
No 200
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=83.01 E-value=3.1 Score=22.39 Aligned_cols=22 Identities=18% Similarity=0.549 Sum_probs=15.3
Q ss_pred cEEEEEEecCCCC--CceEEEEEC
Q psy7728 38 EITLECLVKNAKP--AAKIVWYRG 59 (65)
Q Consensus 38 ~~~L~C~~~~~~P--~~~i~W~~~ 59 (65)
+++|.|.-....+ ...|.|+|.
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~ 25 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRE 25 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEc
Confidence 5799998754321 348999994
No 201
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=80.14 E-value=4.4 Score=22.61 Aligned_cols=24 Identities=17% Similarity=0.455 Sum_probs=16.4
Q ss_pred CCcEEEEEEecCC------CCCceEEEEEC
Q psy7728 36 NQEITLECLVKNA------KPAAKIVWYRG 59 (65)
Q Consensus 36 G~~~~L~C~~~~~------~P~~~i~W~~~ 59 (65)
|.+++|.|.-.-. ...+.|.|+|.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~ 31 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKL 31 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEe
Confidence 6788999984321 12368999985
No 202
>PF04668 Tsg: Twisted gastrulation (Tsg) protein conserved region; InterPro: IPR006761 Tsg was identified in Drosophila melanogaster as being required to specify the dorsal-most structures in the embryo, for example the amnioserosa. Biochemical experiments have revealed three key properties of Tsg: it can synergistically inhibit Dpp/BMP action in both D. melanogaster and vertebrates by forming a tripartite complete between itself, SOG/chordin and a BMP ligand; Tsg seems to enhance the Tld/BMP-1-mediated cleavage rate of SOG/chordin and may change the preference of site utilisation; Tsg can promote the dissociation of chordin cysteine-rich-containing fragments from the ligand to inhibit BMP signalling [, ].
Probab=80.03 E-value=0.47 Score=27.81 Aligned_cols=11 Identities=18% Similarity=0.598 Sum_probs=9.3
Q ss_pred CCceEEEEECC
Q psy7728 50 PAAKIVWYRGN 60 (65)
Q Consensus 50 P~~~i~W~~~~ 60 (65)
-+..++||+||
T Consensus 98 GAssYRWFHdg 108 (132)
T PF04668_consen 98 GASSYRWFHDG 108 (132)
T ss_pred Ccccceeeccc
Confidence 37889999997
No 203
>PHA03376 BARF1; Provisional
Probab=78.63 E-value=3.2 Score=26.17 Aligned_cols=29 Identities=14% Similarity=0.408 Sum_probs=21.4
Q ss_pred EEeecCCcEEEEEEecCC--CCCceEEEEEC
Q psy7728 31 IEIRENQEITLECLVKNA--KPAAKIVWYRG 59 (65)
Q Consensus 31 ~~~~~G~~~~L~C~~~~~--~P~~~i~W~~~ 59 (65)
+...-|+.++|+|.-... -+.-.|.|||.
T Consensus 21 Vta~VGEda~LsC~lnp~ssa~~MrIrWqKs 51 (221)
T PHA03376 21 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKL 51 (221)
T ss_pred hhheeCCcEEEEecccCccCCCceEEEEEec
Confidence 467789999999976411 24457999995
No 204
>PHA03376 BARF1; Provisional
Probab=77.52 E-value=2.4 Score=26.69 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=19.7
Q ss_pred CCcEEEEEEecCCCCCceEEEEECC
Q psy7728 36 NQEITLECLVKNAKPAAKIVWYRGN 60 (65)
Q Consensus 36 G~~~~L~C~~~~~~P~~~i~W~~~~ 60 (65)
-+..+++|. .++.|.|.++|.-|.
T Consensus 139 ~~~~~i~C~-sggfP~P~~~Wle~~ 162 (221)
T PHA03376 139 FSVLTVTCT-VNAFPHPHVQWLMPE 162 (221)
T ss_pred CCeeEEEEe-cCCcCCchheecccc
Confidence 355689999 588999999998763
No 205
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=73.85 E-value=4.3 Score=23.68 Aligned_cols=30 Identities=20% Similarity=0.475 Sum_probs=18.6
Q ss_pred ecCCcEEEEEEecCCC----CCceEEEEECCEEc
Q psy7728 34 RENQEITLECLVKNAK----PAAKIVWYRGNTEL 63 (65)
Q Consensus 34 ~~G~~~~L~C~~~~~~----P~~~i~W~~~~~~l 63 (65)
.=++++.|.|.+.+-. +.-.|+|..+|+.+
T Consensus 25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~I 58 (130)
T PF08204_consen 25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDI 58 (130)
T ss_dssp TT-SEEEE--BBSS---SSGGGEEEEEEETTEEE
T ss_pred ecCCCEEEEeEeccccccccceEEEEEEECCeEE
Confidence 4468899999985421 33459999999864
No 206
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=66.30 E-value=14 Score=20.97 Aligned_cols=24 Identities=21% Similarity=0.480 Sum_probs=15.0
Q ss_pred CCcEEEEEEecCCC--C--------CceEEEEEC
Q psy7728 36 NQEITLECLVKNAK--P--------AAKIVWYRG 59 (65)
Q Consensus 36 G~~~~L~C~~~~~~--P--------~~~i~W~~~ 59 (65)
|.+++|-|+-.-.. | ...|.|++-
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~ 35 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKI 35 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEe
Confidence 46778888765321 1 237899873
No 207
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=55.88 E-value=21 Score=16.65 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=21.9
Q ss_pred EEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCCCCceEEEEE
Q psy7728 11 LYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYR 58 (65)
Q Consensus 11 L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~ 58 (65)
|+|...|..- ......+..|+.+++.+...++. |++
T Consensus 3 ~nvR~~p~~~------s~~i~~l~~g~~v~v~~~~~~~~------W~~ 38 (55)
T PF08239_consen 3 LNVRSGPSTN------SPVIGQLPKGEKVTVLGESGDGN------WYK 38 (55)
T ss_dssp EEEESSSSTT------STEEEEEETTSEEEEEEEETT--------EEE
T ss_pred EEEEeCCCCC------ChhhEEEeCCCEEEEEEEcCCcE------EEE
Confidence 5666666431 11122678999999988876543 776
No 208
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=55.56 E-value=28 Score=18.88 Aligned_cols=22 Identities=23% Similarity=0.652 Sum_probs=15.0
Q ss_pred cEEEEEEecCCCCCc---eEEEEEC
Q psy7728 38 EITLECLVKNAKPAA---KIVWYRG 59 (65)
Q Consensus 38 ~~~L~C~~~~~~P~~---~i~W~~~ 59 (65)
.++|.|.=....|.. +|+|.+-
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~ 26 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKL 26 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEEC
Confidence 578999876443422 6999874
No 209
>PHA02982 hypothetical protein; Provisional
Probab=50.32 E-value=14 Score=23.70 Aligned_cols=29 Identities=28% Similarity=0.615 Sum_probs=22.7
Q ss_pred EeecCCcEEEEEEecCCCCCceEEEEECC
Q psy7728 32 EIRENQEITLECLVKNAKPAAKIVWYRGN 60 (65)
Q Consensus 32 ~~~~G~~~~L~C~~~~~~P~~~i~W~~~~ 60 (65)
...-++++.|.|.-+++.--....|+.++
T Consensus 35 ~a~vd~~V~L~C~~~~~~~i~~~~W~~~~ 63 (251)
T PHA02982 35 NATVDQEVKLQCLFKDADEISRAMWKGDA 63 (251)
T ss_pred hccCCCcEEEEecCCCcchhhhheeeCCC
Confidence 35668999999997766666778999864
No 210
>TIGR02073 PBP_1c penicillin-binding protein 1C. This subfamily of the penicillin binding proteins includes the member from E. coli designated penicillin-binding protein 1C. Members have both transglycosylase and transpeptidase domains and are involved in forming cross-links in the late stages of peptidoglycan biosynthesis. All members of this subfamily are presumed to have the same basic function.
Probab=45.31 E-value=1.1e+02 Score=22.55 Aligned_cols=25 Identities=16% Similarity=0.351 Sum_probs=18.2
Q ss_pred CcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728 37 QEITLECLVKNAKPAAKIVWYRGNTEL 63 (65)
Q Consensus 37 ~~~~L~C~~~~~~P~~~i~W~~~~~~l 63 (65)
+.+.|.+.+.+ ..+.+.||.||+.+
T Consensus 665 ~~~~~~~~~~~--~~~~~~W~~dg~~~ 689 (727)
T TIGR02073 665 AALLLVLIAAG--GASGLYWFLDGKLL 689 (727)
T ss_pred ccceEEEEecC--CCCceEEEECCEEe
Confidence 34556666643 56789999999986
No 211
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=40.73 E-value=90 Score=19.75 Aligned_cols=47 Identities=11% Similarity=0.371 Sum_probs=25.7
Q ss_pred cccCCCEEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEEEEecCCC-CCceEEEEECCEE
Q psy7728 3 SRYGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAK-PAAKIVWYRGNTE 62 (65)
Q Consensus 3 ~~~~~~~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~C~~~~~~-P~~~i~W~~~~~~ 62 (65)
+|++..+.=.|+.+|. |. +.+.+| ...|.+.--. ....|.|+-++..
T Consensus 69 ~r~~a~~~P~Vy~~P~---vs-------v~F~~g---~AVC~A~CVP~~~v~l~W~v~d~~ 116 (211)
T PF02124_consen 69 TRFNATATPSVYPKPR---VS-------VRFEDG---YAVCTARCVPRGNVTLRWSVGDDP 116 (211)
T ss_pred eEeecccccceecCCE---EE-------EEecCC---EEEEEcceeeCCCeEEEEEECCcc
Confidence 4555555566666663 22 234344 4556553221 2378999988753
No 212
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=37.94 E-value=61 Score=17.66 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=16.9
Q ss_pred EEeecCCcEEEEEEecCCCCCceEEE
Q psy7728 31 IEIRENQEITLECLVKNAKPAAKIVW 56 (65)
Q Consensus 31 ~~~~~G~~~~L~C~~~~~~P~~~i~W 56 (65)
..+..|+.+.++|.+.=..| ..+.|
T Consensus 13 ~vV~~G~Sv~VNCStsC~~p-~~~GL 37 (91)
T PF03921_consen 13 PVVPPGGSVWVNCSTSCPQP-EKIGL 37 (91)
T ss_dssp EEEETTEEEEEEEEESSSS--SEEEE
T ss_pred cEECCCCCEEEEEcCCCCCC-CcceE
Confidence 36788999999999854444 23444
No 213
>PRK14051 negative regulator GrlR; Provisional
Probab=37.77 E-value=50 Score=18.93 Aligned_cols=16 Identities=25% Similarity=0.684 Sum_probs=12.7
Q ss_pred eecCCcEEEEEEecCC
Q psy7728 33 IRENQEITLECLVKNA 48 (65)
Q Consensus 33 ~~~G~~~~L~C~~~~~ 48 (65)
...|..++|.|.+++.
T Consensus 80 ~sn~~~~~l~~HV~~N 95 (123)
T PRK14051 80 LSNDNNLTLHCHVRGN 95 (123)
T ss_pred eeCCCCeEEEEEEcCC
Confidence 4567889999999763
No 214
>KOG1026|consensus
Probab=34.62 E-value=38 Score=25.39 Aligned_cols=31 Identities=23% Similarity=0.441 Sum_probs=25.9
Q ss_pred EeecCCcEEEEEEecCCCCCceEEEEECCEEc
Q psy7728 32 EIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63 (65)
Q Consensus 32 ~~~~G~~~~L~C~~~~~~P~~~i~W~~~~~~l 63 (65)
.+..|..+++.|+.. +.|.+.+.||.++...
T Consensus 203 ~v~~~~~~~~~c~~~-~~~vp~~~~~~~~~~~ 233 (774)
T KOG1026|consen 203 TVEEGSSITLKCSQA-GIPVPCHYWFPNCLAS 233 (774)
T ss_pred hhcccchheeeeecc-cCCCcceeeecccccc
Confidence 567889999999985 5799999999987543
No 215
>PHA03298 envelope glycoprotein L; Provisional
Probab=34.61 E-value=29 Score=20.61 Aligned_cols=13 Identities=31% Similarity=0.797 Sum_probs=10.7
Q ss_pred CCceEEEEECCEE
Q psy7728 50 PAAKIVWYRGNTE 62 (65)
Q Consensus 50 P~~~i~W~~~~~~ 62 (65)
|+--|-|||+|..
T Consensus 94 ~pEvI~wyksGtA 106 (167)
T PHA03298 94 NPEAIFWYKNGTA 106 (167)
T ss_pred CceeEEEecCCce
Confidence 6677999999864
No 216
>PHA00008 J DNA packaging protein
Probab=34.17 E-value=36 Score=14.27 Aligned_cols=15 Identities=27% Similarity=0.758 Sum_probs=9.9
Q ss_pred CCCceEEEEECCEEc
Q psy7728 49 KPAAKIVWYRGNTEL 63 (65)
Q Consensus 49 ~P~~~i~W~~~~~~l 63 (65)
+-...--||.+|.+.
T Consensus 11 r~KGARLWYVGGtQf 25 (26)
T PHA00008 11 RRKGARLWYVGGTQF 25 (26)
T ss_pred ccCceEEEEeccEEc
Confidence 334455799988764
No 217
>PF07467 BLIP: Beta-lactamase inhibitor (BLIP); InterPro: IPR009099 The beta-lactamase-inhibitor protein (BLIP) is produced by Streptomyces species. BLIP acts as a potent inhibitor of beta-lactamases such as TEM-1, which is the most widespread resistance enzyme to penicillin antibiotics. BLIP binds competitively to TEM-1 and makes direct contacts with TEM-1 active site residues. BLIP is able to inhibit a variety of class A beta-lactamases, possibly through flexibility of its two domains. The two tandemly repeated domains of BLIP have an alpha(2)-beta(4) structure, the beta-hairpin loop from domain 1 inserting into the active site of beta-lactamase []. BLIP shows no sequence similarity with BLIP-II, even though both bind to and inhibit TEM-1 [].; PDB: 3GMY_B 3GMX_B 3C4O_B 1XXM_C 1S0W_D 3N4I_B 3C7U_B 2G2W_B 3C7V_D 3E2K_C ....
Probab=33.33 E-value=1.1e+02 Score=19.00 Aligned_cols=30 Identities=7% Similarity=0.056 Sum_probs=22.7
Q ss_pred eecCCcEEEEEEec-CCCCCceEEEEECCEE
Q psy7728 33 IRENQEITLECLVK-NAKPAAKIVWYRGNTE 62 (65)
Q Consensus 33 ~~~G~~~~L~C~~~-~~~P~~~i~W~~~~~~ 62 (65)
...|-...+.|.+. +..++...-||-||..
T Consensus 145 s~~G~~~~~~C~s~~~~~~~~a~f~fTDGvL 175 (183)
T PF07467_consen 145 STAGWEESYQCTSATGEFYPSAYFHFTDGVL 175 (183)
T ss_dssp S-TT-EEEEEEESSSSSTSSEEEEEEETTEE
T ss_pred CCCCceEEEEecccccccCCceEEEEecceE
Confidence 46788889999987 5567777889999864
No 218
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=31.36 E-value=1e+02 Score=19.53 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=16.1
Q ss_pred CCeEEeecCCcEEEEEEecCCCCCceEEEEECC
Q psy7728 28 NSKIEIRENQEITLECLVKNAKPAAKIVWYRGN 60 (65)
Q Consensus 28 ~~~~~~~~G~~~~L~C~~~~~~P~~~i~W~~~~ 60 (65)
++.+.+.+|++++| ||-...||..+
T Consensus 152 g~~lkL~PGesitL--------~Pg~~HsFwae 176 (225)
T COG3822 152 GSQLKLSPGESITL--------PPGLYHSFWAE 176 (225)
T ss_pred ceeEEECCCCcEec--------CCCceeeeeec
Confidence 34556666766665 56677888753
No 219
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=30.29 E-value=70 Score=15.60 Aligned_cols=28 Identities=14% Similarity=0.271 Sum_probs=19.3
Q ss_pred EeecCCcEEEEEEecCCCCCceEEEEECC
Q psy7728 32 EIRENQEITLECLVKNAKPAAKIVWYRGN 60 (65)
Q Consensus 32 ~~~~G~~~~L~C~~~~~~P~~~i~W~~~~ 60 (65)
.+..|+.++|+... .......+.|.-++
T Consensus 7 ~~~~g~~v~f~~~~-~~g~~~~y~W~fgd 34 (69)
T PF00801_consen 7 YVPTGQPVTFTASS-SDGSPVTYSWDFGD 34 (69)
T ss_dssp CEBTTSEEEEEETT-TTSSECEEEEE-SS
T ss_pred EEcCCCEEEEEEEc-cCCCCeEEEEEECC
Confidence 46778888998876 22345678888776
No 220
>COG4953 PbpC Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell envelope biogenesis, outer membrane]
Probab=30.16 E-value=1.5e+02 Score=22.30 Aligned_cols=24 Identities=21% Similarity=0.515 Sum_probs=17.4
Q ss_pred EEEEEEecCCCCCceEEEEECCEEcc
Q psy7728 39 ITLECLVKNAKPAAKIVWYRGNTELK 64 (65)
Q Consensus 39 ~~L~C~~~~~~P~~~i~W~~~~~~l~ 64 (65)
++|.-.+.++ ...+.||-||.++.
T Consensus 672 ~~l~l~~~g~--~~~~~W~lng~~l~ 695 (733)
T COG4953 672 VTLKLIAQGG--RGPIYWFLNGEPLG 695 (733)
T ss_pred eEEEEEcCCC--cceeEEEeCCcCcc
Confidence 5666665443 57799999998874
No 221
>PRK11240 penicillin-binding protein 1C; Provisional
Probab=28.54 E-value=2.6e+02 Score=21.02 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=18.5
Q ss_pred cEEEEEEecCCCCCceEEEEECCEEc
Q psy7728 38 EITLECLVKNAKPAAKIVWYRGNTEL 63 (65)
Q Consensus 38 ~~~L~C~~~~~~P~~~i~W~~~~~~l 63 (65)
.+.|.+.+.+ +...+.||.||+.+
T Consensus 713 ~~~l~~~~~~--~~~~~~W~~d~~~~ 736 (772)
T PRK11240 713 EATLPLSTSG--GAGRRWWFLNGEPL 736 (772)
T ss_pred ceeEEEEccC--CCceEEEEECCEEc
Confidence 4667777643 57899999999876
No 222
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=26.83 E-value=1.1e+02 Score=16.22 Aligned_cols=31 Identities=6% Similarity=0.082 Sum_probs=17.0
Q ss_pred EEEEEEcCCCccEEEeCCCCCeEEeecCCcEEEE
Q psy7728 9 TRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLE 42 (65)
Q Consensus 9 ~~L~V~~pP~~~~i~~~~~~~~~~~~~G~~~~L~ 42 (65)
..+.+.+.++...+... ..+.+.+|+.++++
T Consensus 44 Y~v~a~~~~dG~~~t~~---~~V~vrAGd~~~v~ 74 (75)
T TIGR03000 44 YTVTAEYDRDGRILTRT---RTVVVRAGDTVTVD 74 (75)
T ss_pred EEEEEEEecCCcEEEEE---EEEEEcCCceEEee
Confidence 44555555555444322 23567777777664
No 223
>PF14041 Lipoprotein_21: LppP/LprE lipoprotein
Probab=26.72 E-value=1.1e+02 Score=16.19 Aligned_cols=13 Identities=0% Similarity=0.327 Sum_probs=6.0
Q ss_pred CCceEEEEECCEE
Q psy7728 50 PAAKIVWYRGNTE 62 (65)
Q Consensus 50 P~~~i~W~~~~~~ 62 (65)
|+-.+-.|++|+-
T Consensus 24 ~~~~vl~Fh~G~f 36 (89)
T PF14041_consen 24 SPQQVLFFHDGEF 36 (89)
T ss_pred CCeEEEEEECCEE
Confidence 3444445554443
No 224
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=26.30 E-value=71 Score=19.41 Aligned_cols=13 Identities=23% Similarity=0.552 Sum_probs=10.3
Q ss_pred CceEEEEECCEEc
Q psy7728 51 AAKIVWYRGNTEL 63 (65)
Q Consensus 51 ~~~i~W~~~~~~l 63 (65)
+..|+||.||+.+
T Consensus 149 ~~~i~~yvDg~~v 161 (212)
T cd02175 149 PDSIRWYVDGELV 161 (212)
T ss_pred CCEEEEEECCEEE
Confidence 4579999999865
No 225
>TIGR02934 nifT_nitrog probable nitrogen fixation protein FixT. This largely uncharacterized protein family is assigned a role in nitrogen fixation by two criteria. First, its gene occurs, generally, among genes essential for expression of active nitrogenase. Second, its phylogenetic profile closely matches that of nitrogen-fixing bacteria. However, mutational studies in Klebsiella pneumoniae failed to demonstrate any phenotype for deletion or overexpression of the protein.
Probab=25.82 E-value=1.1e+02 Score=15.88 Aligned_cols=20 Identities=25% Similarity=0.489 Sum_probs=13.5
Q ss_pred CCcccCCCEEEEEEcCCCccE
Q psy7728 1 MLSRYGPRTRLYQFAPPSSIE 21 (65)
Q Consensus 1 ~~~~~~~~~~L~V~~pP~~~~ 21 (65)
|| |.+..-.|.+++|-++.+
T Consensus 4 mi-R~~~~g~l~~YvpKKDLE 23 (67)
T TIGR02934 4 MI-RRNRAGELSAYVPKKDLE 23 (67)
T ss_pred EE-EeCCCCCEEEEEECCcch
Confidence 56 555556789998876653
No 226
>COG4118 Phd Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]
Probab=25.55 E-value=43 Score=17.96 Aligned_cols=21 Identities=29% Similarity=0.711 Sum_probs=14.5
Q ss_pred EeecCCcEEEEEEecCCCCCceEE
Q psy7728 32 EIRENQEITLECLVKNAKPAAKIV 55 (65)
Q Consensus 32 ~~~~G~~~~L~C~~~~~~P~~~i~ 55 (65)
.+.+|+.++++ ..|+|.|.|.
T Consensus 20 rV~aGEev~IT---~~G~PVAriv 40 (84)
T COG4118 20 RVRAGEEVIIT---KRGRPVARLV 40 (84)
T ss_pred HHhCCCEEEEe---eCCeEEEEEe
Confidence 46788888875 3567777654
No 227
>PF10430 Ig_Tie2_1: Tie-2 Ig-like domain 1; InterPro: IPR018941 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. Angiogenesis is a physiological process whereby new blood vessels are formed from existing ones. It is essential for tissue repair and regeneration during wound healing but also plays important roles in many pathological processes including tumor growth and metastasis [, ]. Angiogenesis is regulated in part by the receptor protein tyrosine kinase Tie2 and its ligands, the angiopoietins. The angiopoietin-binding site is harbord by the N-terminal two immunoglobulin-like (Ig-like) domains of Tie2 []. The angiopoietin-1 receptor contains the Tie-2 Ig-like domain. This protein is a tyrosine-kinase transmembrane receptor for angiopoietin 1. It probably regulates endothelial cell proliferation, differentiation and guides the proper patterning of endothelial cells during blood vessel formation. Tie2 contains not two but three immunoglobulin domains. They fold together with the three epidermal growth factor domains to form a compact, arrowhead-shaped structure [].; GO: 0004714 transmembrane receptor protein tyrosine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation, 0007169 transmembrane receptor protein tyrosine kinase signaling pathway, 0005887 integral to plasma membrane; PDB: 2GY7_B 2GY5_A.
Probab=25.15 E-value=1.3e+02 Score=16.67 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=12.0
Q ss_pred eecCCcEEEEEEecCCCCCceEEEEE
Q psy7728 33 IRENQEITLECLVKNAKPAAKIVWYR 58 (65)
Q Consensus 33 ~~~G~~~~L~C~~~~~~P~~~i~W~~ 58 (65)
+....+..|+|.+.+=.+...|+--|
T Consensus 12 lvs~~etSL~Ci~s~W~s~esitigr 37 (96)
T PF10430_consen 12 LVSNSETSLTCIASDWSSHESITIGR 37 (96)
T ss_dssp EE-SS-EEEEEEE-SS--SS--EEEE
T ss_pred ccccCceeEEEEecCCcCCCcEEecc
Confidence 44445558888887656665565444
No 228
>PHA03042 CD47-like protein; Provisional
Probab=24.65 E-value=1.2e+02 Score=20.11 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=20.6
Q ss_pred ecCCcEEEEEEecCCCC------CceEEEEECCEEc
Q psy7728 34 RENQEITLECLVKNAKP------AAKIVWYRGNTEL 63 (65)
Q Consensus 34 ~~G~~~~L~C~~~~~~P------~~~i~W~~~~~~l 63 (65)
.=++++.+.|.+. ++ .-.+.|..||+.+
T Consensus 29 ~CN~TV~IpC~v~--n~~~~ni~~~~V~Wkf~~~~I 62 (286)
T PHA03042 29 TCNKTIVIVCNLN--LLIYYNISNIHINWKFNNKVI 62 (286)
T ss_pred ecCceEEEEeecC--ChhhcCccceEEEEEeCCeeE
Confidence 4468899999984 34 3349999998764
No 229
>PF12158 DUF3592: Protein of unknown function (DUF3592); InterPro: IPR021994 This family of proteins is functionally uncharacterised.This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 150 and 242 amino acids in length.
Probab=24.58 E-value=62 Score=17.99 Aligned_cols=16 Identities=13% Similarity=0.092 Sum_probs=11.6
Q ss_pred CCEEEEEEcCCCccEE
Q psy7728 7 PRTRLYQFAPPSSIEI 22 (65)
Q Consensus 7 ~~~~L~V~~pP~~~~i 22 (65)
..-.++|++.|++|.-
T Consensus 94 ~G~~V~V~Y~P~~P~~ 109 (148)
T PF12158_consen 94 IGDTVTVYYNPNNPEE 109 (148)
T ss_pred CcCEEEEEECCcCCCe
Confidence 3457888888888753
No 230
>PF09186 DUF1949: Domain of unknown function (DUF1949); InterPro: IPR015269 Members of this entry are a set of functionally uncharacterised hypothetical bacterial proteins. They adopt a ferredoxin-like fold, with a beta-alpha-beta-beta-alpha-beta arrangement []. This entry contains the protein Impact, which is a translational regulator that ensures constant high levels of translation under amino acid starvation. It acts by interacting with Gcn1/Gcn1L1, thereby preventing activation of Gcn2 protein kinases (EIF2AK1 to 4) and subsequent down-regulation of protein synthesis. It is evolutionary conserved from eukaryotes to archaea []. ; PDB: 2CVE_A 1VI7_A.
Probab=24.12 E-value=75 Score=14.64 Aligned_cols=16 Identities=19% Similarity=0.233 Sum_probs=11.9
Q ss_pred ccCCCEEEEEEcCCCc
Q psy7728 4 RYGPRTRLYQFAPPSS 19 (65)
Q Consensus 4 ~~~~~~~L~V~~pP~~ 19 (65)
.|+..+.++|.++++.
T Consensus 26 ~y~~~V~~~v~v~~~~ 41 (56)
T PF09186_consen 26 DYTDDVTLTVAVPEEE 41 (56)
T ss_dssp EECTTEEEEEEEECCC
T ss_pred eecceEEEEEEECHHH
Confidence 4677788888887754
No 231
>PRK13244 protease inhibitor protein; Provisional
Probab=23.68 E-value=1.1e+02 Score=18.33 Aligned_cols=10 Identities=30% Similarity=0.594 Sum_probs=7.5
Q ss_pred cEEEEEEecC
Q psy7728 38 EITLECLVKN 47 (65)
Q Consensus 38 ~~~L~C~~~~ 47 (65)
.++|+|.-.+
T Consensus 61 avtLtC~P~~ 70 (145)
T PRK13244 61 AVTLTCAPTA 70 (145)
T ss_pred EEEEEECCCC
Confidence 5789998644
No 232
>PF15531 Toxin_51: Putative toxin 51
Probab=23.14 E-value=52 Score=19.23 Aligned_cols=15 Identities=13% Similarity=0.293 Sum_probs=11.0
Q ss_pred CCCCceEEEEECCEE
Q psy7728 48 AKPAAKIVWYRGNTE 62 (65)
Q Consensus 48 ~~P~~~i~W~~~~~~ 62 (65)
.++=-+|+||.+++.
T Consensus 113 ~R~WdSI~fY~~~~~ 127 (128)
T PF15531_consen 113 DRSWDSIKFYMNGKK 127 (128)
T ss_pred cCCcceeEEEecccc
Confidence 356678999988764
No 233
>cd00146 PKD polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is presented here. The domain is also found in microbial collagenases and chitinases.
Probab=22.98 E-value=1.1e+02 Score=15.09 Aligned_cols=25 Identities=12% Similarity=0.248 Sum_probs=17.6
Q ss_pred CCcEEEEEEecCCCCCceEEEEECC
Q psy7728 36 NQEITLECLVKNAKPAAKIVWYRGN 60 (65)
Q Consensus 36 G~~~~L~C~~~~~~P~~~i~W~~~~ 60 (65)
|..+.+......+.....+.|..++
T Consensus 14 ~~~v~~~~~~~~~~~~~~~~W~fgd 38 (81)
T cd00146 14 GASVTFSASDSSGGSIVSYKWDFGD 38 (81)
T ss_pred CccEEEEEEeCCCCCEEEEEEEeCC
Confidence 7778888777554345678887765
No 234
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 16 GH16 from CAZY comprises enzymes with a number of known activities; lichenase (3.2.1.73 from EC); xyloglucan xyloglucosyltransferase (2.4.1.207 from EC); agarase (3.2.1.81 from EC); kappa-carrageenase (3.2.1.83 from EC); endo-beta-1,3-glucanase (3.2.1.39 from EC); endo-beta-1,3-1,4-glucanase (3.2.1.6 from EC); endo-beta-galactosidase (3.2.1.103 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DGT_A 2CL2_A 2WLQ_A 2WNE_A 2W39_A 2W52_A 3ILN_A 4DFS_A 1UMZ_A 1UN1_B ....
Probab=22.88 E-value=95 Score=18.02 Aligned_cols=13 Identities=15% Similarity=0.342 Sum_probs=10.3
Q ss_pred CceEEEEECCEEc
Q psy7728 51 AAKIVWYRGNTEL 63 (65)
Q Consensus 51 ~~~i~W~~~~~~l 63 (65)
+..|.||.||+.+
T Consensus 129 ~~~i~fyiDg~~~ 141 (185)
T PF00722_consen 129 PDRIRFYIDGKLV 141 (185)
T ss_dssp TTEEEEEETTEEE
T ss_pred cCeEEEEECCEEE
Confidence 4588999999875
No 235
>PF01200 Ribosomal_S28e: Ribosomal protein S28e; InterPro: IPR000289 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. Examples are: Mammalian S28 [] Plant S28 [] Fungi S33 [] Archaebacterial S28e. These proteins have from 64 to 78 amino acids and a highly conserved C-terminal region.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZ6_Y 2XZN_1 2XZM_1 1NY4_A 1NE3_A 3U5C_c 3U5G_c 3O30_R 3O2Z_R 3IZB_Y.
Probab=22.84 E-value=1e+02 Score=16.08 Aligned_cols=10 Identities=40% Similarity=0.627 Sum_probs=6.1
Q ss_pred EeecCCcEEE
Q psy7728 32 EIRENQEITL 41 (65)
Q Consensus 32 ~~~~G~~~~L 41 (65)
++.+||-+.|
T Consensus 49 PVr~GDil~L 58 (69)
T PF01200_consen 49 PVREGDILTL 58 (69)
T ss_dssp TTSTT-EEEE
T ss_pred CcccCcEEEE
Confidence 5677777666
No 236
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=22.68 E-value=92 Score=19.04 Aligned_cols=13 Identities=23% Similarity=0.371 Sum_probs=10.3
Q ss_pred CceEEEEECCEEc
Q psy7728 51 AAKIVWYRGNTEL 63 (65)
Q Consensus 51 ~~~i~W~~~~~~l 63 (65)
+..|+||.||+++
T Consensus 169 p~~i~~yvDG~~v 181 (235)
T cd08023 169 PDKITFYVDGKLY 181 (235)
T ss_pred CCEEEEEECCEEE
Confidence 3579999999875
No 237
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=22.38 E-value=34 Score=19.73 Aligned_cols=9 Identities=44% Similarity=1.040 Sum_probs=7.3
Q ss_pred eEEEEECCE
Q psy7728 53 KIVWYRGNT 61 (65)
Q Consensus 53 ~i~W~~~~~ 61 (65)
-|.|||+|.
T Consensus 78 LI~WYR~gd 86 (118)
T PF10856_consen 78 LIFWYRQGD 86 (118)
T ss_pred heeehhcCC
Confidence 589999875
No 238
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.23 E-value=2e+02 Score=19.67 Aligned_cols=28 Identities=14% Similarity=0.394 Sum_probs=21.2
Q ss_pred CCeEEeecCCcEEEEEEecCCCCC-ceEEEE
Q psy7728 28 NSKIEIRENQEITLECLVKNAKPA-AKIVWY 57 (65)
Q Consensus 28 ~~~~~~~~G~~~~L~C~~~~~~P~-~~i~W~ 57 (65)
+..+.+.+|+.++|+|.-. .+. ..+.|.
T Consensus 63 gP~i~~~~Gd~v~l~~~N~--l~~~t~vh~H 91 (451)
T COG2132 63 GPTIRVKKGDTVTLDLTNR--LLVDTSVHWH 91 (451)
T ss_pred CceEEEecCCEEEEEEEeC--CCCCceEEEc
Confidence 3457899999999999753 355 888885
No 239
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=22.14 E-value=96 Score=18.36 Aligned_cols=12 Identities=17% Similarity=0.407 Sum_probs=10.0
Q ss_pred ceEEEEECCEEc
Q psy7728 52 AKIVWYRGNTEL 63 (65)
Q Consensus 52 ~~i~W~~~~~~l 63 (65)
..|+||.||+++
T Consensus 154 ~~i~~yvDG~~~ 165 (210)
T cd00413 154 GEITFYVDGVLV 165 (210)
T ss_pred CEEEEEECCEEE
Confidence 689999999875
No 240
>PF03712 Cu2_monoox_C: Copper type II ascorbate-dependent monooxygenase, C-terminal domain; PDB: 1YI9_A 3MLL_A 1SDW_A 3MID_A 1YIP_A 3PHM_A 3MIC_A 3MIB_A 1OPM_A 3MIG_A ....
Probab=22.06 E-value=1.6e+02 Score=17.25 Aligned_cols=19 Identities=21% Similarity=0.450 Sum_probs=13.1
Q ss_pred eEEeecCCcEEEEEEecCC
Q psy7728 30 KIEIRENQEITLECLVKNA 48 (65)
Q Consensus 30 ~~~~~~G~~~~L~C~~~~~ 48 (65)
.+.+..|+.+..+|.=..+
T Consensus 86 ~v~i~~GD~l~~~C~Ydns 104 (156)
T PF03712_consen 86 PVTIPPGDTLRTECTYDNS 104 (156)
T ss_dssp EEEE-TT-EEEEEEEEE-T
T ss_pred ceEecCCCEEEEEEEEeCC
Confidence 3689999999999986553
No 241
>cd02183 GH16_fungal_CRH1_transglycosylase glycosylphosphatidylinositol-glucanosyltransferase. Group of fungal GH16 members related to Saccharomyces cerevisiae Crh1p. Chr1p and Crh2p are transglycosylases that are required for the linkage of chitin to beta(1-3)glucose branches of beta(1-6)glucan, an important step in the assembly of new cell wall. Both have been shown to be glycosylphosphatidylinositol (GPI)-anchored. A third homologous protein, Crr1p, functions in the formation of the spore wall. They belongs to the family 16 of glycosyl hydrolases that includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=21.29 E-value=1e+02 Score=18.99 Aligned_cols=13 Identities=23% Similarity=0.670 Sum_probs=10.1
Q ss_pred CceEEEEECCEEc
Q psy7728 51 AAKIVWYRGNTEL 63 (65)
Q Consensus 51 ~~~i~W~~~~~~l 63 (65)
+-.|+||.||+.+
T Consensus 126 pd~I~~yVDG~~v 138 (203)
T cd02183 126 KDRITWYIDGKVV 138 (203)
T ss_pred cCEEEEEECCEEE
Confidence 4578999998865
No 242
>PF11515 Cul7: Mouse development and cellular proliferation protein Cullin-7; InterPro: IPR021097 The CPH domain is found in the Cullin-7, PARC and HERC2 proteins, which are all components of known or predicted E3-ubiquitin ligases. The CPH domain is a protein-protein interaction module that binds the teramerisation domain of the tumour suppressor protein p53 []. Structurally it forms a beta-barrel fold similar to the SH3, Tudor and KOW and domains. Unlike the SH3 and Tudor domains, which bind to small peptides, the CPH domain appears to bind to an extended surface on p53.; PDB: 2JUF_A 2JNG_A.
Probab=21.20 E-value=1.1e+02 Score=16.39 Aligned_cols=31 Identities=13% Similarity=0.188 Sum_probs=20.6
Q ss_pred EeecCCcEEEEEEecCCCCC--ceEEEEECCEE
Q psy7728 32 EIRENQEITLECLVKNAKPA--AKIVWYRGNTE 62 (65)
Q Consensus 32 ~~~~G~~~~L~C~~~~~~P~--~~i~W~~~~~~ 62 (65)
.+.+|+.-.......++.|+ .++.|-.-|..
T Consensus 32 eV~~GD~G~V~k~~~dg~~~lnvqv~W~~~G~t 64 (78)
T PF11515_consen 32 EVRAGDEGEVFKQDRDGLHDLNVQVDWQSKGRT 64 (78)
T ss_dssp TB-TT-EEE-EEEE-TTSSE--EEEEETTTTEE
T ss_pred cccccccceeEeeccCCCCCcceEEEeeecCce
Confidence 36789998877777788888 88888766653
No 243
>PF01681 C6: C6 domain; InterPro: IPR002601 This domain of unknown function is found at the C terminus in a number of Caenorhabditis elegans and Caenorhabditis briggsae proteins. It may be an extracellular domain. Most copies of the C6 domain contain six conserved cysteine residues. However some copies of the domain are missing cysteine residues 1 and 3 suggesting that these form a disulphide bridge. In Q19522 from SWISSPROT there are 18 copies of the domain.
Probab=20.70 E-value=1.5e+02 Score=15.58 Aligned_cols=20 Identities=25% Similarity=0.478 Sum_probs=12.7
Q ss_pred cEEEEEEecCCCCCceEEEEE-CCEEcc
Q psy7728 38 EITLECLVKNAKPAAKIVWYR-GNTELK 64 (65)
Q Consensus 38 ~~~L~C~~~~~~P~~~i~W~~-~~~~l~ 64 (65)
.++|+|.+ ++ .|.. .++.+.
T Consensus 68 t~~ltCn~-~g------~W~y~~g~~It 88 (92)
T PF01681_consen 68 TITLTCNA-DG------QWVYTYGRVIT 88 (92)
T ss_pred EEEEEecC-CC------EEEECCCEEEE
Confidence 46788843 33 5888 777653
No 244
>cd04457 S1_S28E S1_S28E: S28E, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. S28E protein is a component of the 30S ribosomal subunit. S28E is highly conserved among archaea and eukaryotes. S28E may control precursor RNA splicing and turnover in mRNA maturation process but its function in the ribosome is largely unknown. The structure contains an OB-fold found in many oligosaccharide and nucleic acid binding proteins. This implies that S28E might be involved in protein synthesis.
Probab=20.46 E-value=1.4e+02 Score=15.17 Aligned_cols=10 Identities=30% Similarity=0.524 Sum_probs=7.8
Q ss_pred EeecCCcEEE
Q psy7728 32 EIRENQEITL 41 (65)
Q Consensus 32 ~~~~G~~~~L 41 (65)
++..||-+.|
T Consensus 40 PVr~GDIl~L 49 (60)
T cd04457 40 PVREGDILML 49 (60)
T ss_pred CcccCcEEee
Confidence 6788888776
No 245
>PRK10380 hypothetical protein; Provisional
Probab=20.40 E-value=1.4e+02 Score=15.16 Aligned_cols=13 Identities=31% Similarity=1.032 Sum_probs=9.9
Q ss_pred cCCCCCceEEEEE
Q psy7728 46 KNAKPAAKIVWYR 58 (65)
Q Consensus 46 ~~~~P~~~i~W~~ 58 (65)
..|.|.-.++||.
T Consensus 17 ekG~~g~~vtwye 29 (63)
T PRK10380 17 EKGKPGQTVTWYQ 29 (63)
T ss_pred ecCCCCceEEEEE
Confidence 4567888899985
Done!