RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7728
(65 letters)
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 54.0 bits (129), Expect = 7e-11
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 6 GPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
RL FA P + E+ + + ++ + C +N PA KI WYR L+
Sbjct: 105 EATARLNVFAKPEATEVSPNKGTLSVM-EDSAQEIATCNSRNGNPAPKITWYRNGQRLE 162
Score = 26.3 bits (57), Expect = 0.56
Identities = 4/30 (13%), Positives = 12/30 (40%)
Query: 31 IEIRENQEITLECLVKNAKPAAKIVWYRGN 60
+E+ + + L+C + W+ +
Sbjct: 10 VEVMRGKSVILDCTPTGTHDHYMLEWFLTD 39
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 43.9 bits (103), Expect = 3e-07
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 6/53 (11%)
Query: 14 FAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAK--IVWYRGNTELK 64
F P +E++ P + TL C V A P A + RG EL
Sbjct: 86 FQRPDRVELMPLPPW----QPVGENFTLSCRVPGAGPRASLTLTLLRGAQELI 134
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 44.1 bits (103), Expect = 3e-07
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 8 RTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA--KIVWYRGNTELK 64
+T L + P +E+ PS + +TL C V+ P A +V RG ELK
Sbjct: 77 KTFLTVYWTPERVELAPLPS----WQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELK 131
Score = 23.7 bits (50), Expect = 6.8
Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 6/60 (10%)
Query: 7 PRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPA--AKIVWYRGNTELK 64
+L F P++ + P + + + T+ C + P A++ G+ L
Sbjct: 178 APYQLQTFVLPATPPQLVSPRV----LEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLN 233
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 42.4 bits (99), Expect = 1e-06
Identities = 9/56 (16%), Positives = 16/56 (28%), Gaps = 5/56 (8%)
Query: 8 RTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
L A P + V + C+ +P A+I W+ +
Sbjct: 108 DIWLRVLAKPQNTAEVQKVQ-----LTGEPVPMARCVSTGGRPPAQITWHSDLGGM 158
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 42.8 bits (100), Expect = 1e-06
Identities = 8/51 (15%), Positives = 15/51 (29%), Gaps = 5/51 (9%)
Query: 14 FAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
A P + V + C+ +P A+I W+ +
Sbjct: 115 LAKPQNTAEVQKVQ-----LTGEPVPMARCVSTGGRPPAQITWHSDLGGMP 160
Score = 33.9 bits (77), Expect = 0.001
Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 3/47 (6%)
Query: 17 PSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
P + I G+ +N E TL C ++ W L
Sbjct: 216 PPEVSISGYDNNW---YLGQNEATLTCDARSNPEPTGYNWSTTMGPL 259
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 42.2 bits (99), Expect = 1e-06
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 6/51 (11%)
Query: 14 FAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
F P V + S E+ + L+C V N K IVWY+ E+
Sbjct: 5 FTGP---HFVEYLSW---EVTGECNVLLKCKVANIKKETHIVWYKDEREIS 49
Score = 36.0 bits (83), Expect = 2e-04
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 22 IVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
+ G P + I+E + + L C V P ++ W + L
Sbjct: 225 LGGLPDV--VTIQEGKALNLTCNVW-GDPPPEVSWLKNEKALA 264
Score = 26.4 bits (58), Expect = 0.64
Identities = 8/52 (15%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 13 QFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
+ +I ++ KI+ + I L V K+ W + ++
Sbjct: 100 ELMMEVCKKIALSATDLKIQSTA-EGIQLYSFVTYYVEDLKVNWSHNGSAIR 150
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 40.5 bits (95), Expect = 2e-06
Identities = 7/50 (14%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
+ I +E+ E + + EC++ + + +W G +
Sbjct: 4 GSSGHVGITKRLKT--MEVLEGESCSFECVLSHESASDPAMWTVGGKTVG 51
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 42.0 bits (98), Expect = 2e-06
Identities = 8/56 (14%), Positives = 19/56 (33%)
Query: 8 RTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
+ L A P++ + ++++ + C N KP + + W
Sbjct: 122 QLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGE 177
Score = 37.4 bits (86), Expect = 8e-05
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 5/51 (9%)
Query: 13 QFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
Q+ P +IE + ++ L C PA + W N L
Sbjct: 229 QYEPEVTIE-----GFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSL 274
Score = 26.3 bits (57), Expect = 0.62
Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 8/59 (13%)
Query: 9 TRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAK---IVWYRGNTELK 64
+ P ++V + + ++ L C N P+ K + W + K
Sbjct: 7 GQQMGRDPS---QVVQVNDS--MYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSK 60
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 41.3 bits (96), Expect = 2e-06
Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 8 RTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAK--IVWYRGNTELK 64
+ + + PP + + P+ + + T+EC V +P + +RGN L
Sbjct: 79 NSNVSVYQPPRQVILTLQPTL----VAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLH 133
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus
receptor, cell adhesion, integrin ligand, glycopr LFA-1
ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A
1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 40.5 bits (94), Expect = 5e-06
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 14 FAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAK--IVWYRGNTELK 64
+ P +E+ PS +++TL C V+ P A+ +V RG ELK
Sbjct: 83 YWTPERVELAPLPSW----QPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELK 131
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 40.3 bits (94), Expect = 6e-06
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
E+ + L+C V N K IVWY+ E+
Sbjct: 125 SWEVTGECNVLLKCKVANIKKETHIVWYKDEREIS 159
Score = 34.1 bits (78), Expect = 0.001
Identities = 6/34 (17%), Positives = 13/34 (38%)
Query: 31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
+EI E ++ + AK+ + E+
Sbjct: 12 VEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIF 45
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo
sapiens}
Length = 97
Score = 38.5 bits (90), Expect = 8e-06
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 22 IVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
+ G + E + C ++N + ++ WY G +L+
Sbjct: 4 VSGQIMH--AVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLE 44
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 40.2 bits (93), Expect = 8e-06
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 14 FAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAK--IVWYRGNTELK 64
+ P +E+ PS + +TL C V+ P A +V RG ELK
Sbjct: 83 YWTPERVELAPLPS----WQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELK 131
Score = 28.7 bits (63), Expect = 0.10
Identities = 8/52 (15%), Positives = 20/52 (38%), Gaps = 6/52 (11%)
Query: 14 FAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWY--RGNTEL 63
F P++ + P + + + T+ C + P ++ + G+ L
Sbjct: 185 FVLPATPPQLVSPR----VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRL 232
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1, isoform 2; hydrolase, immunoglobulin domain,
nucleus, protease; 2.80A {Homo sapiens}
Length = 218
Score = 39.9 bits (93), Expect = 9e-06
Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 3/63 (4%)
Query: 2 LSRYGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNT 61
+ P +I +P + + Q + L C P + W++ N
Sbjct: 1 MGSSHHHHHHSSGLVPRGSKITVNPES--KAVLAGQFVKLCCRA-TGHPFVQYQWFKMNK 57
Query: 62 ELK 64
E+
Sbjct: 58 EIP 60
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 38.0 bits (89), Expect = 1e-05
Identities = 7/50 (14%), Positives = 15/50 (30%), Gaps = 4/50 (8%)
Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
+ IE+ +E+ + E + ++P W L
Sbjct: 1 GAMALIEVEKPLYG--VEVFVGETAHFEIEL--SEPDVHGQWKLKGQPLA 46
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 38.1 bits (89), Expect = 1e-05
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 7/50 (14%)
Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
+N +++ E C PAA + W +G EL+
Sbjct: 7 GAN---CFTEELTN--LQVEEKGTAVFTCKT--EHPAATVTWRKGLLELR 49
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 102
Score = 37.8 bits (88), Expect = 2e-05
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 25 HPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
P++ +++ TL C V A+ ++ WY+ +L
Sbjct: 15 QPAHREVQAEAGASATLSCEV--AQAQTEVTWYKDGKKLS 52
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 38.8 bits (90), Expect = 2e-05
Identities = 11/59 (18%), Positives = 16/59 (27%), Gaps = 6/59 (10%)
Query: 5 YGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
+ L A + I S EI + + C P + W EL
Sbjct: 96 HLAEVTLSVKADFPTPSI------SDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEEL 148
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 38.8 bits (90), Expect = 2e-05
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
E+ + L+C V N K IVWY+ E+
Sbjct: 230 SWEVTGECNVLLKCKVANIKKETHIVWYKDEREIS 264
Score = 36.5 bits (84), Expect = 2e-04
Identities = 10/56 (17%), Positives = 18/56 (32%)
Query: 9 TRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
RL + V S +EI E ++ + AK+ + E+
Sbjct: 95 KRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIF 150
Score = 35.0 bits (80), Expect = 5e-04
Identities = 7/49 (14%), Positives = 16/49 (32%), Gaps = 7/49 (14%)
Query: 16 PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
P + E+V ++ + EC P ++ W + +
Sbjct: 3 DPFTKEVV-----VNVDDDGVISLNFECDK--MTPKSEFSWSKDYVSTE 44
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 38.8 bits (90), Expect = 3e-05
Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 22 IVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
+ P+ ++I+ + +EC P +I+W R +
Sbjct: 41 FLKEPT-NRIDFSNSTGAEIECKAS-GNPMPEIIWIRSDGTA 80
Score = 36.5 bits (84), Expect = 2e-04
Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 6/51 (11%)
Query: 13 QFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
+F PP I + + L+C+ P +I W ++
Sbjct: 426 RFDPP---VIRQAFQE--ETMEPGPSVFLKCVAG-GNPTPEISWELDGKKI 470
Score = 35.7 bits (82), Expect = 3e-04
Identities = 9/65 (13%), Positives = 14/65 (21%), Gaps = 4/65 (6%)
Query: 3 SRYGPRTRLYQFAPPSSIE---IVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRG 59
+R P S +V + + L C P WY+
Sbjct: 227 TRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPA-QGYPVPVFRWYKF 285
Query: 60 NTELK 64
Sbjct: 286 IEGTT 290
Score = 33.8 bits (77), Expect = 0.001
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 30 KIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
K I + + + C V P IVW R N L
Sbjct: 535 KKAIVAGETLIVTCPVA-GYPIDSIVWERDNRALP 568
Score = 31.4 bits (71), Expect = 0.008
Identities = 9/49 (18%), Positives = 14/49 (28%), Gaps = 4/49 (8%)
Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
P I + + + Q +TL C V I W +
Sbjct: 617 VLPRIIP----FAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAI 661
Score = 31.4 bits (71), Expect = 0.009
Identities = 9/56 (16%), Positives = 14/56 (25%), Gaps = 6/56 (10%)
Query: 8 RTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
T L AP S P + + C P + W + +
Sbjct: 335 ETVLTVTAPLS---AKIDPPT--QTVDFGRPAVFTCQY-TGNPIKTVSWMKDGKAI 384
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 38.6 bits (90), Expect = 3e-05
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 14 FAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
PP + + +E + ITL+C V P +I WY+ +T+L+
Sbjct: 3 MEPPY---FIEPLEH--VEAAIGEPITLQCKVD-GTPEIRIAWYKEHTKLR 47
Score = 36.3 bits (84), Expect = 2e-04
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 6/50 (12%)
Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
PP P + +++ + T +C V KI W + N E++
Sbjct: 196 VPP---FFDLKPVS--VDLALGESGTFKCHV-TGTAPIKITWAKDNREIR 239
Score = 36.3 bits (84), Expect = 2e-04
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
PP P +E + ++ LEC ++ P ++ W++ EL+
Sbjct: 383 EPPV---FRKKPHP--VETLKGADVHLECELQ-GTPPFQVSWHKDKRELR 426
Score = 34.4 bits (79), Expect = 0.001
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
APP V S+ I +E+ L+ ++ + W++ E+
Sbjct: 476 APP---RFVKKLSD--ISTVVGEEVQLQATIE-GAEPISVAWFKDKGEI 518
Score = 31.7 bits (72), Expect = 0.007
Identities = 7/57 (12%), Positives = 14/57 (24%), Gaps = 3/57 (5%)
Query: 8 RTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
L + + + EC + ++ WY+ LK
Sbjct: 90 SAVLVIKERKLPPSFARKLKD--VHETLGFPVAFECRIN-GSEPLQVSWYKDGELLK 143
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 38.3 bits (89), Expect = 3e-05
Identities = 9/58 (15%), Positives = 15/58 (25%), Gaps = 5/58 (8%)
Query: 8 RTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELKL 65
V PS+ + L C ++ + I W + L L
Sbjct: 13 HHHHGGRRSL---HFVSEPSD--AVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILAL 65
Score = 31.7 bits (72), Expect = 0.007
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 6/66 (9%)
Query: 3 SRYGPRTRLYQFAPPSSIE---IVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRG 59
+R G + + P + PSN + E ++ LEC V P W RG
Sbjct: 202 TRTGNEAEVRILSDPGLHRQLYFLQRPSN--VIAIEGKDAVLECCVS-GYPPPSFTWLRG 258
Query: 60 NTELKL 65
++L
Sbjct: 259 EEVIQL 264
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 37.0 bits (86), Expect = 4e-05
Identities = 6/50 (12%), Positives = 20/50 (40%), Gaps = 7/50 (14%)
Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
E++ ++ + ++ ++ +C V + WY+ E++
Sbjct: 7 GQL---EVLQDIAD--LTVKAAEQAVFKCEV--SDEKVTGKWYKNGVEVR 49
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 37.8 bits (88), Expect = 5e-05
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
PP P +E + ++ LEC ++ P ++ W++ EL+
Sbjct: 191 EPPV---FRKKPHP--VETLKGADVHLECELQ-GTPPFQVSWHKDKRELR 234
Score = 36.6 bits (85), Expect = 1e-04
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 6/51 (11%)
Query: 14 FAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
APP P + +++ + T +C V KI W + N E++
Sbjct: 3 MAPPF---FDLKPVS--VDLALGESGTFKCHV-TGTAPIKITWAKDNREIR 47
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 37.9 bits (88), Expect = 5e-05
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 21 EIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
+ +PS+ + + + +EC P I W + + L
Sbjct: 113 DFRQNPSD--VMVAVGEPAVMECQPPRGHPEPTISWKKDGSPL 153
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 36.5 bits (85), Expect = 5e-05
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 4/47 (8%)
Query: 18 SSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
S I + + + + LEC V A + W++ E+
Sbjct: 6 SGIMVTKQLED--TTAYCGERVELECEVSE--DDANVKWFKNGEEII 48
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 36.6 bits (85), Expect = 6e-05
Identities = 5/36 (13%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 29 SKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
++ + + + A P ++ WY+ E++
Sbjct: 16 PAYQVDKGGRVRFVVEL--ADPKLEVKWYKNGQEIR 49
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 36.6 bits (85), Expect = 6e-05
Identities = 6/50 (12%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
+ P + I+ + ++ + L C + ++ WY+ +++
Sbjct: 6 SGP--VHILSPQDKVSLTFTTSERVVLTCEL--SRVDFPATWYKDGQKVE 51
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 37.2 bits (86), Expect = 7e-05
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 8 RTRLYQFAPPSSIEIVGHP---SNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
+ + + P +E+ S + E Q + L C K+++Y+ LK
Sbjct: 69 QHQQVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALK 128
Query: 65 L 65
Sbjct: 129 Y 129
Score = 33.3 bits (76), Expect = 0.002
Identities = 8/48 (16%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 17 PSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
P ++ +P + I + + +TL C N + W+ + +
Sbjct: 2 PQKPKVSLNPPWN--RIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSE 47
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 37.4 bits (87), Expect = 7e-05
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 13 QFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
+ APP V + + +R+ ++ L+ V P + +YR E++
Sbjct: 100 ETAPP---NFVQRLQS--MTVRQGSQVRLQVRVT-GIPTPVVKFYRDGAEIQ 145
Score = 31.2 bits (71), Expect = 0.010
Identities = 7/49 (14%), Positives = 16/49 (32%), Gaps = 6/49 (12%)
Query: 16 PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
P+ + + + E T E + P ++ W+R +
Sbjct: 5 APT---FTQPLQS--VVVLEGSTATFEAHIS-GFPVPEVSWFRDGQVIS 47
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 37.1 bits (86), Expect = 8e-05
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
APP ++ + I + + +TL C + + I W+ +
Sbjct: 1 APPKAVLKL---EPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIP 47
Score = 36.3 bits (84), Expect = 1e-04
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 8 RTRLYQFAPPSSIEIVGHP---SNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
+T + P + ++ +E +E + I L C KP K+ +++ K
Sbjct: 69 QTGQTSLSDPVHLTVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQK 128
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 37.2 bits (86), Expect = 8e-05
Identities = 8/56 (14%), Positives = 17/56 (30%), Gaps = 5/56 (8%)
Query: 8 RTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
+ +L PPS L C ++ P ++ W++ +
Sbjct: 99 KVKLIVLVPPS---KPTVNIP--SSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVM 149
Score = 33.4 bits (76), Expect = 0.002
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
A S + H S ++ I EN + L C + + ++ W +
Sbjct: 1 AMGS---VTVHSSEPEVRIPENNPVKLSCAY-SGFSSPRVEWKFDQGDT 45
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 36.2 bits (84), Expect = 9e-05
Identities = 8/50 (16%), Positives = 17/50 (34%), Gaps = 7/50 (14%)
Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
P IV + ++ + + V A+++W + EL
Sbjct: 7 GPV---LIVTPLED--QQVFVGDRVEMAVEVSE--EGAQVMWMKNGVELT 49
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 36.6 bits (85), Expect = 1e-04
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
Query: 10 RLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
L P +I P N ++I E + L C P + W +G++ L+
Sbjct: 94 ALQVKMKP---KITRPPIN--VKIIEGLKAVLPCTTM-GNPKPSVSWIKGDSALR 142
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 35.8 bits (83), Expect = 1e-04
Identities = 10/50 (20%), Positives = 15/50 (30%), Gaps = 8/50 (16%)
Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
P E E TL+C + A + W +G L+
Sbjct: 7 GPA---RFTQDLKT--KEASEGATATLQCELS---KVAPVEWKKGPETLR 48
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic
adhesion, arterial smooth muscle cells; 0.96A {Homo
sapiens}
Length = 99
Score = 35.7 bits (83), Expect = 1e-04
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 6/50 (12%)
Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
APP + +RE Q++ + V+ +P + W R ++
Sbjct: 4 APP---TFKVSLMD--QSVREGQDVIMSIRVQ-GEPKPVVSWLRNRQPVR 47
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 36.6 bits (85), Expect = 1e-04
Identities = 7/50 (14%), Positives = 13/50 (26%), Gaps = 3/50 (6%)
Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
A P + L + +P + W+ G L+
Sbjct: 99 ATPQFHPGYPLKEK--YYGAVGSTLRLHVMYI-GRPVPAMTWFHGQKLLQ 145
Score = 34.3 bits (79), Expect = 9e-04
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 6/49 (12%)
Query: 16 PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
P I + + + + L C + +P I WYR EL
Sbjct: 7 APG---IRKEMKD--VTTKLGEAAQLSCQI-VGRPLPDIKWYRFGKELI 49
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 36.7 bits (84), Expect = 1e-04
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 9 TRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
R + PPS I P ++ + I L C + AK I WY+ N EL
Sbjct: 121 VRSHIRKPPSCI-----PETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQEL 170
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 36.6 bits (84), Expect = 1e-04
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 7/63 (11%)
Query: 3 SRYGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTE 62
S L + + E + +E+ + ITL+ LV +A +W ++
Sbjct: 36 SPEDLGCALRPQSSGTVYE------AAAVEVDVSASITLQVLV-DAPGNISCLWVFKHSS 88
Query: 63 LKL 65
L
Sbjct: 89 LNC 91
Score = 32.3 bits (73), Expect = 0.005
Identities = 5/57 (8%), Positives = 16/57 (28%), Gaps = 6/57 (10%)
Query: 8 RTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
R + ++ ++ + + + C + + W N L+
Sbjct: 220 RLFTIDLNQTPQTTL------PQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALE 270
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 35.1 bits (81), Expect = 2e-04
Identities = 8/50 (16%), Positives = 17/50 (34%), Gaps = 4/50 (8%)
Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
S I + + + L C + +P A++ W + E+
Sbjct: 9 DVSSWIVYPSGKVY--VAAVRLERVVLTCEL--CRPWAEVRWTKDGEEVV 54
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family,
cellular adhesion, ligand-independent DIME mutational
analysis, transferase; HET: EPE; 1.96A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.4
Length = 182
Score = 35.9 bits (83), Expect = 2e-04
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 6/50 (12%)
Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
A +++G P + + + Q + L C V I W + ++
Sbjct: 1 AGL---KLMGAPVK--LTVSQGQPVKLNCSV-EGMEEPDIQWVKDGAVVQ 44
Score = 29.8 bits (67), Expect = 0.030
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 5/54 (9%)
Query: 10 RLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
L P P + + + N L C IVW+RG T++
Sbjct: 92 WLTVEGVP---FFTVEPKD--LAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKI 140
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 35.0 bits (81), Expect = 2e-04
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 7/50 (14%)
Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
P + +E+ E TL C++ + AA + W GN L+
Sbjct: 7 GPV---RFQEALKD--LEVLEGGAATLRCVL--SSVAAPVKWCYGNNVLR 49
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo
sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 35.1 bits (81), Expect = 2e-04
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 13 QFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
Q +PP + P + + E L+C+V +P +VW +G +L
Sbjct: 10 QGSPPC---FLRFPRP--VRVVSGAEAELKCVV-LGEPPPVVVWEKGGQQLA 55
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 35.5 bits (82), Expect = 3e-04
Identities = 9/51 (17%), Positives = 15/51 (29%), Gaps = 3/51 (5%)
Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELKL 65
P I P I + + C P I W + T++ +
Sbjct: 106 TPAGFPVITQGPGT--RVIEVGHTVLMTCKAI-GNPTPNIYWIKNQTKVDM 153
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 35.1 bits (81), Expect = 3e-04
Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 17 PSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
+ I+ + ++++E T C + + + W+ T L
Sbjct: 11 GRRVHIIEDLED--VDVQEGSSATFRCRI-SPANYEPVHWFLDKTPLH 55
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 35.7 bits (82), Expect = 3e-04
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 29 SKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
S E + + L C K +++YR K
Sbjct: 90 SSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFK 125
Score = 31.8 bits (72), Expect = 0.006
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 22 IVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
I P + + + + +TL C V + ++ W+ T +
Sbjct: 4 ITLQPPW--VSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQ 44
Score = 24.5 bits (53), Expect = 3.0
Identities = 6/43 (13%), Positives = 13/43 (30%), Gaps = 3/43 (6%)
Query: 16 PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYR 58
+ + ++ + E +TL C K + Y
Sbjct: 168 LFPAPVLNASVTS---PLLEGNLVTLSCETKLLLQRPGLQLYF 207
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 35.5 bits (82), Expect = 3e-04
Identities = 5/44 (11%), Positives = 15/44 (34%), Gaps = 3/44 (6%)
Query: 21 EIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
+ + + + ++++ KP I W +G +
Sbjct: 106 KTLEGMGA--VHALRGEVVSIKIPFS-GKPDPVITWQKGQDLID 146
Score = 33.9 bits (78), Expect = 0.001
Identities = 12/49 (24%), Positives = 16/49 (32%), Gaps = 6/49 (12%)
Query: 16 PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
P N + +R TL C V P + WYR E+
Sbjct: 4 AP---HFKEELRN--LNVRYQSNATLVCKV-TGHPKPIVKWYRQGKEII 46
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 34.6 bits (80), Expect = 3e-04
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 16 PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
PP +I PS+ I I E + +T+ C +P ++ W G ++
Sbjct: 5 PP---KIEALPSD--ISIDEGKVLTVACAFT-GEPTPEVTWSCGGRKIH 47
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 35.4 bits (81), Expect = 4e-04
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 7/62 (11%)
Query: 3 SRYGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTE 62
S L + + E + +E+ + ITL+ LV +A +W ++
Sbjct: 36 SPEDLGCALRPQSSGTVYE------AAAVEVDVSASITLQVLV-DAPGNISCLWVFKHSS 88
Query: 63 LK 64
L
Sbjct: 89 LN 90
Score = 35.1 bits (80), Expect = 6e-04
Identities = 4/38 (10%), Positives = 15/38 (39%)
Query: 27 SNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
+ ++ ++ + + + C + + W N L+
Sbjct: 233 TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALE 270
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding,
cell adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 34.2 bits (79), Expect = 4e-04
Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 4/45 (8%)
Query: 20 IEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
P + +E+ E + K+ W RG +++
Sbjct: 9 SAFSKKPRS--VEVAAGSPAVFEAET--ERAGVKVRWQRGGSDIS 49
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain
C2; IG domain, structural protein; NMR {Homo sapiens}
SCOP: b.1.1.4
Length = 104
Score = 34.3 bits (79), Expect = 4e-04
Identities = 6/33 (18%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 32 EIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
++ + +I L + A A++ W + E++
Sbjct: 27 QVSKGHKIRLTVEL--ADHDAEVKWLKNGQEIQ 57
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 35.1 bits (80), Expect = 4e-04
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 32 EIRENQEITLECLVKNAKPAAK--IVWYRGNTELK 64
+ + IT++C V + P + I +G+ +K
Sbjct: 102 PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMK 136
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 34.8 bits (80), Expect = 5e-04
Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 21 EIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
+ P + + + + LEC P ++W + L
Sbjct: 110 DFRVEPKD--TRVAKGETALLECGPPKGIPEPTLIWIKDGVPLD 151
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 35.1 bits (80), Expect = 5e-04
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Query: 16 PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
P I G+ N + I + C P +I+W++ N L
Sbjct: 666 AP---TITGNLEN--QTTSIGESIEVSCTAS-GNPPPQIMWFKDNETLV 708
Score = 35.1 bits (80), Expect = 5e-04
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 3/56 (5%)
Query: 9 TRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
T + P G S +E + + + P +I WY+ L+
Sbjct: 320 TFVRVHEKPFVAFGSGMESL--VEATVGERVRIPAKYL-GYPPPEIKWYKNGIPLE 372
Score = 30.5 bits (68), Expect = 0.020
Identities = 8/50 (16%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 8 RTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWY 57
+ ++V PS+ IE+ +++ L C + + I +
Sbjct: 212 IMYIVVVVGYRIYDVVLSPSHG-IELSVGEKLVLNCTAR-TELNVGIDFN 259
Score = 30.1 bits (67), Expect = 0.027
Identities = 5/56 (8%), Positives = 14/56 (25%)
Query: 8 RTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
+ + P + I +N+ + + CL + +
Sbjct: 115 YVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRF 170
Score = 26.6 bits (58), Expect = 0.60
Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
Query: 10 RLYQFAPPSSIEIVGHPSNSKIE-IRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
L + PP +I S ++ + TL C V P I WY E
Sbjct: 414 SLVVYVPP---QIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEE 465
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 34.6 bits (79), Expect = 6e-04
Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 5/54 (9%)
Query: 8 RTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNT 61
+ PP + S+ I E + L C ++ P WY+
Sbjct: 75 TANIQLHGPP---RVKAVKSS--EHINEGETAMLVCKSESVPPVTDWAWYKITD 123
Score = 30.4 bits (68), Expect = 0.019
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 35 ENQEITLECLVK-NAKPAAKIVWYRGNTELK 64
+I L C + +A W +G LK
Sbjct: 12 LGSKILLTCSLNDSATEVTGHRWLKGGVVLK 42
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 33.8 bits (78), Expect = 6e-04
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 6/50 (12%)
Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
PS + + E Q+ L+C V P +I W ++
Sbjct: 10 VAPS---FSSVLKD--CAVIEGQDFVLQCSV-RGTPVPRITWLLNGQPIQ 53
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 34.6 bits (79), Expect = 6e-04
Identities = 8/56 (14%), Positives = 15/56 (26%), Gaps = 5/56 (8%)
Query: 8 RTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
L PPS + L C + P ++ W++ +
Sbjct: 96 SIHLTVLVPPS---KPTISVP--SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISM 146
Score = 28.4 bits (63), Expect = 0.095
Identities = 7/39 (17%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 22 IVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGN 60
+ S+ +++ EN+ I L C + + ++ W
Sbjct: 4 VYTAQSD--VQVPENESIKLTCTY-SGFSSPRVEWKFVQ 39
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 34.9 bits (80), Expect = 6e-04
Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
Query: 16 PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
P + P+ ++I+ + +EC P +I+W R +
Sbjct: 3 GPV---FLKEPT-NRIDFSNSTGAEIECKAS-GNPMPEIIWIRSDGTA 45
Score = 29.5 bits (66), Expect = 0.040
Identities = 12/63 (19%), Positives = 19/63 (30%), Gaps = 3/63 (4%)
Query: 3 SRYGPRTRLYQFAPPSSIEIVGHPSNSK--IEIRENQEITLECLVKNAKPAAKIVWYRGN 60
+R P S P+ + +E+ I+L C PA WY+
Sbjct: 192 TRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPA-QGFPAPSFRWYKFI 250
Query: 61 TEL 63
Sbjct: 251 EGT 253
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 34.4 bits (79), Expect = 7e-04
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 4/55 (7%)
Query: 9 TRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
+ PP+ I + N +E+T C P I W+R +
Sbjct: 89 IIVIVNVPPA-ISMPQKSFN--ATAERGEEMTFSCRAS-GSPEPAISWFRNGKLI 139
Score = 31.3 bits (71), Expect = 0.009
Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
+ + S E ++ ++ + C V ++ PA + W N E+
Sbjct: 1 SMLT---FREVVSP--QEFKQGEDAEVVCRV-SSSPAPAVSWLYHNEEV 43
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 34.6 bits (79), Expect = 7e-04
Identities = 10/55 (18%), Positives = 16/55 (29%), Gaps = 4/55 (7%)
Query: 9 TRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
L P ++ P N EN + T C P ++ + T
Sbjct: 176 RELRVLYGPR-LDERDCPGN--WTWPENSQQTPMCQAW-GNPLPELKCLKDGTFP 226
Score = 30.0 bits (67), Expect = 0.030
Identities = 8/50 (16%), Positives = 19/50 (38%), Gaps = 7/50 (14%)
Query: 16 PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPA--AKIVWYRGNTEL 63
P + ++V + + + T+ C + P A++ G+ L
Sbjct: 3 PATPPQLVSPR-----VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRL 47
Score = 24.6 bits (53), Expect = 2.7
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 32 EIRENQEITLECLVKNAKPAAKIVWY 57
E+ E E+T++C A P AK+
Sbjct: 109 EVSEGTEVTVKC---EAHPRAKVTLN 131
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex,
beta trefoil, IG domain, growth factor/growth factor
receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 334
Score = 34.6 bits (79), Expect = 7e-04
Identities = 8/43 (18%), Positives = 11/43 (25%), Gaps = 2/43 (4%)
Query: 22 IVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
G + + L C P VW + T L
Sbjct: 11 EPGQQEQ--LVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLV 51
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 33.9 bits (78), Expect = 8e-04
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
P + P + ++ E + LEC + +A P K+ W R N ++
Sbjct: 14 RAPM---FIYKPQS--KKVLEGDSVKLECQI-SAIPPPKLFWKRNNEMVQ 57
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 34.1 bits (78), Expect = 0.001
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 5/51 (9%)
Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELKL 65
P + P+ + REN LEC+++ K W +
Sbjct: 5 KYP---VLKDQPAE--VLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNW 50
Score = 31.0 bits (70), Expect = 0.013
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
E + L+C++ NA P I W + +
Sbjct: 110 KTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGA 142
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 33.5 bits (77), Expect = 0.001
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 6/50 (12%)
Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
P+ I G+ N + I + C P +I+W++ N L
Sbjct: 9 VAPT---ITGNLEN--QTTSIGESIEVSCTAS-GNPPPQIMWFKDNETLV 52
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules,
NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4
b.1.1.4 PDB: 1ie5_A
Length = 291
Score = 34.1 bits (78), Expect = 0.001
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
Query: 21 EIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
++ PS EI + C V I W+ N E
Sbjct: 4 QVDIVPSQ--GEISVGESKFFLCQVAGDAKDKDISWFSPNGEK 44
Score = 34.1 bits (78), Expect = 0.001
Identities = 8/49 (16%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 17 PSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELKL 65
+ P+ E +E ++ + C V + I+W ++ L
Sbjct: 98 FQKLMFKNAPTP--QEFKEGEDAVIVCDVV-SSLPPTIIWKHKGRDVIL 143
Score = 32.9 bits (75), Expect = 0.003
Identities = 9/56 (16%), Positives = 17/56 (30%), Gaps = 4/56 (7%)
Query: 8 RTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
++ PP+ + S Q +TL C P + W + +
Sbjct: 186 DIQVIVNVPPT---VQARQSIVNATANLGQSVTLVCDAD-GFPEPTMSWTKDGEPI 237
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 34.2 bits (78), Expect = 0.001
Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 4/58 (6%)
Query: 8 RTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELKL 65
LY P S ++ + + E QE L CL+ + + R L
Sbjct: 80 TIHLYVKDPAHSWNLLAQE----VTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVL 133
Score = 30.3 bits (68), Expect = 0.022
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 13 QFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELKL 65
P +I PS + + + C NA+ ++ RG+T+L++
Sbjct: 180 NRVHPEPPQIKLEPSK--LVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEI 230
Score = 27.2 bits (60), Expect = 0.28
Identities = 6/39 (15%), Positives = 14/39 (35%), Gaps = 5/39 (12%)
Query: 25 HPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
PS ++ + + +TL C+ + W +
Sbjct: 8 EPSGPELVVEPGETVTLRCVSN-----GSVEWDGPISPY 41
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 33.5 bits (77), Expect = 0.001
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 7/56 (12%)
Query: 9 TRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
L A P I+ N E E L C + A + W++G+ L+
Sbjct: 11 AMLTVRALP--IKFTEGLRN--EEATEGATAVLRCEL---SKMAPVEWWKGHETLR 59
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 33.1 bits (76), Expect = 0.001
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 6/50 (12%)
Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
P + +I E +T C V P KI W++ ++
Sbjct: 7 GAP---FFEMKLKH--YKIFEGMPVTFTCRVA-GNPKPKIYWFKDGKQIS 50
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 33.7 bits (77), Expect = 0.001
Identities = 7/52 (13%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 13 QFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
+ P + + + P + E +TL+C + W+ + +
Sbjct: 3 EDLPKAVVFL--EPQWY--SVLEKDSVTLKCQGAYSPEDNSTQWFHNESLIS 50
Score = 32.9 bits (75), Expect = 0.003
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 8 RTRLYQFAPPSSIEIVGHP---SNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
+T L + P +E+ + +E I L C K+ + + + K
Sbjct: 72 QTNLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRK 131
Query: 65 L 65
Sbjct: 132 Y 132
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 33.7 bits (77), Expect = 0.001
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 5/50 (10%)
Query: 16 PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELKL 65
PP+ I + + I +EC K PA W R + +
Sbjct: 16 PPT---ITKQSA-KDHIVDPRDNILIECEAK-GNPAPSFHWTRNSRFFNI 60
Score = 32.5 bits (74), Expect = 0.004
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 29 SKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
+ ++E +TL+C P+ I W + E
Sbjct: 124 DPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEP 158
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 33.7 bits (77), Expect = 0.001
Identities = 6/40 (15%), Positives = 11/40 (27%)
Query: 26 PSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELKL 65
+ +E I L C K+ + + K
Sbjct: 93 LQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKY 132
Score = 30.6 bits (69), Expect = 0.016
Identities = 7/50 (14%), Positives = 17/50 (34%), Gaps = 4/50 (8%)
Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
P + + + P + E +TL+C + W+ + +
Sbjct: 5 LPKAVVFL--EPQWY--RVLEKDSVTLKCQGAYSPEDQSTQWFHNESLIS 50
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 32.5 bits (74), Expect = 0.002
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 15 APPSSIE---IVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
AP ++ +V +R ++T C K+ PA +VW R +
Sbjct: 1 APLAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGK 52
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 33.4 bits (76), Expect = 0.002
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 4/56 (7%)
Query: 8 RTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
LY P ++ + E+Q+ L CL+ + A + R
Sbjct: 80 AIHLYVKDPARPWN----VLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRP 131
Score = 26.9 bits (59), Expect = 0.40
Identities = 6/48 (12%), Positives = 14/48 (29%), Gaps = 3/48 (6%)
Query: 13 QFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGN 60
Q P + P+ + + + C + V+ + N
Sbjct: 180 QKVIPGPPALTLVPAE--LVRIRGEAAQIVCSASSV-DVNFDVFLQHN 224
Score = 25.3 bits (55), Expect = 1.5
Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 10/44 (22%)
Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYR 58
+ P I PS ++ ++ +TL C+ + W
Sbjct: 3 SIPV---IE--PSVPELVVKPGATVTLRCVGN-----GSVEWDG 36
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 32.7 bits (75), Expect = 0.002
Identities = 5/50 (10%), Positives = 18/50 (36%), Gaps = 7/50 (14%)
Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
P I+ + + +++ L C + ++ + W + ++
Sbjct: 7 GPA---AIIKPLED--QWVAPGEDVELRCEL--SRAGTPVHWLKDRKAIR 49
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 33.3 bits (76), Expect = 0.002
Identities = 10/49 (20%), Positives = 15/49 (30%), Gaps = 4/49 (8%)
Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
PP I + +E+T C P I W+R +
Sbjct: 191 VPP---AISMPQKSFNATAERGEEMTFSCRAS-GSPEPAISWFRNGKLI 235
Score = 32.1 bits (73), Expect = 0.006
Identities = 9/49 (18%), Positives = 15/49 (30%), Gaps = 7/49 (14%)
Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
A ++ S +E+ + C +P I WY E
Sbjct: 3 ALL---QVTISLSK--VELSVGESKFFTCTA-IGEP-ESIDWYNPQGEK 44
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 32.1 bits (73), Expect = 0.003
Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 6/53 (11%)
Query: 11 LYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
L + A P + + + + + + L C +++ I W R +L
Sbjct: 3 LPEQAQPWGVPV--EVES--LLVHPGDLLQLRCRLRDDVQ--SINWLRDGVQL 49
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A
{Mus musculus}
Length = 270
Score = 32.7 bits (74), Expect = 0.003
Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 12/74 (16%)
Query: 3 SRYGPRTRLYQFAPPSSIEIVGHPSN-----------SKIEIRENQEITLECLVKNAKPA 51
S F P + + ++ N S+ EI Q+ TL CL P
Sbjct: 120 SSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPD 179
Query: 52 -AKIVWYRGNTELK 64
++ W+ E+
Sbjct: 180 HVELSWWVNGKEVH 193
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 31.5 bits (72), Expect = 0.004
Identities = 7/47 (14%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 18 SSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
S ++I+ ++ + +EI L+C + W + ++
Sbjct: 6 SGLKILTPLTD--QTVNLGKEICLKCEI---SENIPGKWTKNGLPVQ 47
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 31.9 bits (73), Expect = 0.004
Identities = 7/50 (14%), Positives = 18/50 (36%), Gaps = 6/50 (12%)
Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
+ P I+ P + ++R + + L V W + +++
Sbjct: 6 SGPQ---IIQFPED--QKVRAGESVELFGKVT-GTQPITCTWMKFRKQIQ 49
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 31.6 bits (72), Expect = 0.005
Identities = 5/33 (15%), Positives = 9/33 (27%), Gaps = 1/33 (3%)
Query: 32 EIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
+ + VK P + W+ L
Sbjct: 12 SPTSDHHWCIPFTVK-GNPKPALQWFYNGAILN 43
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 32.1 bits (73), Expect = 0.005
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 29 SKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
+ E ++ + C V A P+A I W+R L
Sbjct: 26 VAVYTWEGNQVNITCEVF-AYPSATISWFRDGQLLP 60
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin
fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP:
b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 32.1 bits (73), Expect = 0.005
Identities = 10/48 (20%), Positives = 14/48 (29%), Gaps = 5/48 (10%)
Query: 16 PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
++ PS EI + C V I W+ N E
Sbjct: 2 VL---QVDIVPSQ--GEISVGESKFFLCQVAGDAKDKDISWFSPNGEK 44
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 32.3 bits (73), Expect = 0.005
Identities = 10/56 (17%), Positives = 17/56 (30%), Gaps = 3/56 (5%)
Query: 8 RTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
L +I++ H + E+ L C V++A W L
Sbjct: 99 SYTLRILRQLRNIQVTNHSQLFQ---NMTCELHLTCSVEDADDNVSFRWEALGNTL 151
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 31.8 bits (72), Expect = 0.006
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 5/50 (10%)
Query: 16 PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELKL 65
VG+P N I TL C ++ ++ W R L+L
Sbjct: 2 ESP---FVGNPGN--ITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILEL 46
Score = 28.3 bits (63), Expect = 0.10
Identities = 8/55 (14%), Positives = 15/55 (27%), Gaps = 7/55 (12%)
Query: 10 RLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPA-AKIVWYRGNTEL 63
+ P + P + + N L C P ++W + L
Sbjct: 100 YVGLEGLPY---FLEEPED--RTVAANTPFNLSCQA-QGPPEPVDLLWLQDAVPL 148
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 32.0 bits (72), Expect = 0.007
Identities = 6/51 (11%), Positives = 12/51 (23%), Gaps = 5/51 (9%)
Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELKL 65
PS + L+C K + W + + +
Sbjct: 120 VKPSGTRC-----FVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTM 165
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 31.4 bits (71), Expect = 0.007
Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 6/55 (10%)
Query: 9 TRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
L PP I + ++ ++C +++ P +I W L
Sbjct: 7 GTLTVNGPPI---ISSTQT---QHALHGEKGQIKCFIRSTPPPDRIAWSWKENVL 55
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB:
2xy1_A*
Length = 192
Score = 31.7 bits (72), Expect = 0.008
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
+ P+ I + N +E+T C + P I W+R ++
Sbjct: 1 SMPA-ISMPQKSFN--ATAERGEEMTFSCRA-SGSPEPAISWFRNGKLIE 46
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 30.8 bits (70), Expect = 0.008
Identities = 9/49 (18%), Positives = 14/49 (28%), Gaps = 6/49 (12%)
Query: 16 PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
P I+ I+I+ LE P W G++
Sbjct: 2 KPK---ILTASRK--IKIKAGFTHNLEVDFI-GAPDPTATWTVGDSGAA 44
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 31.0 bits (70), Expect = 0.012
Identities = 6/35 (17%), Positives = 9/35 (25%)
Query: 29 SKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
S + +R Q + L C W
Sbjct: 110 STVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPS 144
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 31.1 bits (70), Expect = 0.012
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 7/56 (12%)
Query: 10 RLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELKL 65
R+Y P SI SN+ + + + C + A +W+ N L +
Sbjct: 105 RVYPELPKPSIS-----SNNSKPVEDKDAVAFTCEPET--QDATYLWWVNNQSLPV 153
Score = 29.9 bits (67), Expect = 0.029
Identities = 6/32 (18%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 32 EIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
+ E +E+ L + WY+G
Sbjct: 10 NVAEGKEVLLLVHNL-PQHLFGYSWYKGERVD 40
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 30.6 bits (69), Expect = 0.016
Identities = 5/28 (17%), Positives = 10/28 (35%)
Query: 37 QEITLECLVKNAKPAAKIVWYRGNTELK 64
+ I L V K+ W + ++
Sbjct: 18 EGIQLYSFVTYYVEDLKVNWSHNGSAIR 45
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 30.8 bits (69), Expect = 0.016
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 26 PSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELKL 65
S + +RE +E T+ C +K+ + W R N++ KL
Sbjct: 216 VSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKL 255
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 30.6 bits (69), Expect = 0.019
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 17 PSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
P +IV + + Q +TLEC P I W + +
Sbjct: 111 PYPADIVVQFKD--VYALMGQNVTLECFA-LGNPVPDIRWRKVLEPM 154
Score = 26.4 bits (58), Expect = 0.62
Identities = 5/38 (13%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 29 SKIEIRENQEITLECLVKNAKPAAKIV-WYRGNTELKL 65
++ ++E + + L C P W + +
Sbjct: 16 PEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFI 53
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 30.5 bits (69), Expect = 0.020
Identities = 5/50 (10%), Positives = 15/50 (30%), Gaps = 6/50 (12%)
Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
A ++ S +E+ + C +P + + ++
Sbjct: 1 ALL---QVTISLSK--VELSVGESKFFTCTAI-GEPESIDWYNPQGEKII 44
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 30.2 bits (68), Expect = 0.023
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 35 ENQEITLECLVKNAKPAAKIVWYRGNTELKL 65
EN ++TL C + +P +I W R
Sbjct: 14 ENGQVTLVCDAE-GEPIPEITWKRAVDGFTF 43
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 30.3 bits (68), Expect = 0.025
Identities = 6/60 (10%), Positives = 15/60 (25%), Gaps = 1/60 (1%)
Query: 5 YGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPA-AKIVWYRGNTEL 63
P + + E +++L C++ + P + W
Sbjct: 320 PAPIEKTISKTKGKPRAPQVYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAP 379
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 29.9 bits (67), Expect = 0.028
Identities = 6/46 (13%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
Query: 18 SSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
+ + G +NS + + Q +TL + + +
Sbjct: 94 VQLLVFGLTANSDTHLLQGQSLTLTLES-PPGSSPSVQCRSPRGKN 138
Score = 28.8 bits (64), Expect = 0.083
Identities = 6/38 (15%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 28 NSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELKL 65
+ ++ + L C K + + W N L
Sbjct: 2 KKVVLGKKGDTVELTCTASQ-KKSIQFHWKNSNQIKIL 38
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 29.9 bits (67), Expect = 0.031
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 33 IRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
E TL C V ++ Y+G L+
Sbjct: 112 YWECSNATLTCEVLEG-TDVELKLYQGKEHLR 142
Score = 23.7 bits (51), Expect = 5.6
Identities = 5/31 (16%), Positives = 9/31 (29%)
Query: 35 ENQEITLECLVKNAKPAAKIVWYRGNTELKL 65
+TL L ++ W + L
Sbjct: 13 TGSNVTLTILKHPLASYQRLTWLHTTNQKIL 43
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 29.8 bits (67), Expect = 0.038
Identities = 8/58 (13%), Positives = 13/58 (22%), Gaps = 3/58 (5%)
Query: 8 RTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELKL 65
R +F ++I E + C PA W +
Sbjct: 91 REASLRFGFLQEFSAE---ERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFI 145
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 29.1 bits (65), Expect = 0.055
Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 5/59 (8%)
Query: 6 GPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPA-AKIVWYRGNTEL 63
G T L A PS+ + G ++ C P + W++ EL
Sbjct: 106 GAGTELSVRAKPSAPVVSG----PAARATPQHTVSFTCESHGFSPRDITLKWFKNGNEL 160
Score = 24.9 bits (54), Expect = 2.1
Identities = 9/45 (20%), Positives = 17/45 (37%)
Query: 21 EIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELKL 65
E+ + + + + L C V + P I W+RG +
Sbjct: 3 ELQVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARE 47
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle,
IGI, thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 28.9 bits (64), Expect = 0.058
Identities = 8/47 (17%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 16 PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTE 62
PP I + ++ L+ + PA ++W + T+
Sbjct: 13 PPKIHLDCPGRIPDTIVVVAGNKLRLDVPIS-GDPAPTVIWQKAITQ 58
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 29.3 bits (65), Expect = 0.061
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 25 HPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
P+N +E+ +I L C V + + W + +
Sbjct: 213 SPANETMEVDLGSQIQLICNVT-GQLSDIAYWKWNGSVID 251
Score = 26.6 bits (58), Expect = 0.57
Identities = 5/31 (16%), Positives = 13/31 (41%)
Query: 35 ENQEITLECLVKNAKPAAKIVWYRGNTELKL 65
N+ C + + I WY+ +++ +
Sbjct: 19 ANEIDVRPCPLNPNEHKGTITWYKDDSKTPV 49
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A
{Homo sapiens}
Length = 339
Score = 29.3 bits (65), Expect = 0.062
Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 8/57 (14%)
Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLEC------LVKNAKPAAKIVWYRGNTELKL 65
A S H E + + L C L + P + W++ ++ +
Sbjct: 14 AARSCRFRGRHYKR--EFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTV 68
Score = 23.9 bits (51), Expect = 4.3
Identities = 7/50 (14%), Positives = 16/50 (32%), Gaps = 4/50 (8%)
Query: 17 PSSIEIVGHPSNSKIEIRENQEIT---LECLVKNAKPAAKIVWYRGNTEL 63
+ + + + + + L + K KI WY+ + L
Sbjct: 118 NTDAFLPFISYPQILTLSTSGVLVCPDLSEFTR-DKTDVKIQWYKDSLLL 166
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A
1r70_B 3cm9_A
Length = 475
Score = 29.1 bits (65), Expect = 0.065
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 32 EIRENQEITLECLVKNAKPA-AKIVWYRGNTEL 63
E+ N+ +TL CL + P + W +G+ EL
Sbjct: 361 ELALNELVTLTCLARGFSPKDVLVRWLQGSQEL 393
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus
musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A
1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B
2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B*
2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Length = 238
Score = 28.8 bits (64), Expect = 0.076
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 29 SKIEIRENQEITLECLVKNAKP-AAKIVWYRGNTELK 64
SK EI Q+ TL CL + P ++ W+ E+
Sbjct: 129 SKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVH 165
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 28.5 bits (63), Expect = 0.091
Identities = 5/39 (12%), Positives = 17/39 (43%)
Query: 26 PSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
+ +++ T+ C +K+ + +W + N + +
Sbjct: 193 VPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQ 231
>3mjg_X Beta-type platelet-derived growth factor receptor;
protein-protein complex, growth factor-receptor
complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo
sapiens}
Length = 289
Score = 28.5 bits (63), Expect = 0.094
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 5/43 (11%)
Query: 22 IVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
+V P ++ + + L C +A +VW R + E
Sbjct: 1 LVVTPPGPELVLNVSSTFVLTC-----SGSAPVVWERMSQEPP 38
Score = 28.5 bits (63), Expect = 0.12
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 16 PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELKL 65
SSI + + + + R+ + ITL C+V W E
Sbjct: 178 QVSSINVSVNAVQTVV--RQGENITLMCIVI-GNEVVNFEWTYPRKESGR 224
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C
region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
b.1.1.2
Length = 444
Score = 28.7 bits (64), Expect = 0.097
Identities = 10/59 (16%), Positives = 17/59 (28%), Gaps = 1/59 (1%)
Query: 6 GPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPA-AKIVWYRGNTEL 63
P R S + E +++TL C+V + P + W
Sbjct: 331 APIERTISKPKGSVRAPQVYVLPPPEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTE 389
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane,
immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B*
3q5t_A
Length = 240
Score = 28.4 bits (63), Expect = 0.10
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 29 SKIEIRENQEITLECLVKNAKP-AAKIVWYRGNTELK 64
SK EI Q+ TL CL + P ++ W+ E+
Sbjct: 130 SKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVH 166
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1,
BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 27.7 bits (62), Expect = 0.11
Identities = 6/34 (17%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 31 IEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
+ + L C +++ I W R +L
Sbjct: 13 FLVHPGDLLQLRCRLRDDVQ--SINWLRDGVQLA 44
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 28.4 bits (63), Expect = 0.11
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 35 ENQEITLECLVKNAKPAAKIVWYRGNTELK 64
E TL C V ++ Y+G L+
Sbjct: 109 ECSNATLTCEVLEG-TDVELKLYQGKEHLR 137
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor,
immune system/receptor/complex, TCR, MHC,
immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E
2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D*
3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E
3kxf_E 2cde_B ...
Length = 252
Score = 28.1 bits (62), Expect = 0.13
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 29 SKIEIRENQEITLECLVKNAKP-AAKIVWYRGNTELK 64
S+ EI Q+ TL CL P ++ W+ E+
Sbjct: 131 SEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVH 167
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 28.1 bits (62), Expect = 0.13
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 4/47 (8%)
Query: 20 IEIVGHPSNSKIEIR----ENQEITLECLVKNAKPAAKIVWYRGNTE 62
+E+ S + + ++ I LEC P +I W E
Sbjct: 113 VELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGE 159
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 28.2 bits (62), Expect = 0.14
Identities = 5/38 (13%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 26 PSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
+NS + + Q +TL + + +
Sbjct: 101 TANSDTHLLQGQSLTLTLES-PPGSSPSVQCRSPRGKN 137
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex,
immunoglobulin fold, immune receptor, membr immune
system; HET: NAG; 2.55A {Homo sapiens}
Length = 268
Score = 28.1 bits (62), Expect = 0.14
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 29 SKIEIRENQEITLECLVKNAKPA-AKIVWYRGNTELK 64
S+ EI Q+ TL CL P ++ W+ E+
Sbjct: 154 SEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVH 190
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens}
PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Length = 246
Score = 27.9 bits (62), Expect = 0.15
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 29 SKIEIRENQEITLECLVKNAKPA-AKIVWYRGNTELK 64
S+ EI Q+ TL CL P ++ W+ E+
Sbjct: 133 SEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVH 169
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 0.17
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 11/34 (32%)
Query: 2 LSRYGPRTRLYQFAPPSSIEIVGHPS---NSKIE 32
L + +LY A S+ P+ + +E
Sbjct: 22 LKKLQASLKLY--ADDSA------PALAIKATME 47
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 27.5 bits (61), Expect = 0.17
Identities = 6/38 (15%), Positives = 10/38 (26%), Gaps = 1/38 (2%)
Query: 26 PSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
P + + E L C V + W +
Sbjct: 11 PLTQNVTVVEGGTAILTCRVDQN-DNTSLQWSNPAQQT 47
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 27.9 bits (62), Expect = 0.19
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 13/59 (22%)
Query: 7 PRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPA-AKIVWYRGNTELK 64
R ++ PPS E+ N+ +TL CL + P + W +G+ EL
Sbjct: 105 FRPEVHLLPPPSE------------ELALNELVTLTCLARGFSPKDVLVRWLQGSQELP 151
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 27.9 bits (61), Expect = 0.20
Identities = 7/51 (13%), Positives = 11/51 (21%), Gaps = 2/51 (3%)
Query: 14 FAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
AP + +TL C + A + W
Sbjct: 1 LAPRRCPAQEVARGV--LTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAG 49
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 27.5 bits (61), Expect = 0.22
Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 1/59 (1%)
Query: 5 YGPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPA-AKIVWYRGNTE 62
P + A E + + +++L CLVK P+ + W
Sbjct: 339 PAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQP 397
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II,
MEM receptor, molecular mimicry, multiple sclerosis,
immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo
sapiens}
Length = 279
Score = 27.5 bits (61), Expect = 0.22
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 29 SKIEIRENQEITLECLVKNAKPA-AKIVWYRGNTELK 64
S+ EI Q+ TL CL P ++ W+ E+
Sbjct: 158 SEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVH 194
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system;
2.68A {Homo sapiens} PDB: 3hg1_E
Length = 245
Score = 27.5 bits (61), Expect = 0.22
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 29 SKIEIRENQEITLECLVKNAKPA-AKIVWYRGNTELK 64
S+ EI Q+ TL CL P ++ W+ E+
Sbjct: 132 SEAEISHTQKATLVCLATGFFPDHVELSWWVNGKEVH 168
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 27.4 bits (60), Expect = 0.26
Identities = 8/57 (14%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 9 TRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVK-NAKPAAKIVWYRGNTELK 64
+ ++V PS+ IE+ +++ L C + W +++ +
Sbjct: 94 MYIVVVVGYRIYDVVLSPSHG-IELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQ 149
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B
4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B
3qjh_B 3qiw_D* 3qiu_D
Length = 245
Score = 27.3 bits (60), Expect = 0.28
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 29 SKIEIRENQEITLECLVKNAKPA-AKIVWYRGNTELK 64
S+ EI Q+ TL CL P ++ W+ E+
Sbjct: 132 SEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVH 168
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell
membrane, disulfide bond, glycoprotein, immunoglobulin
domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC;
3.60A {Homo sapiens}
Length = 589
Score = 27.3 bits (60), Expect = 0.30
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 6/50 (12%)
Query: 20 IEIVGHPSNSKIEIRENQEITLECLVKN------AKPAAKIVWYRGNTEL 63
++ G+ S ++ + T C++K A IVW + +
Sbjct: 2 LDPCGYISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTI 51
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR,
VEGF receptor, cancer, immune system-transfer complex;
HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 27.0 bits (59), Expect = 0.35
Identities = 8/50 (16%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 16 PPSSIEIVGHPSNSKIEIRENQEITLECLVK-NAKPAAKIVWYRGNTELK 64
P I V + IE+ +++ L C + W +++ +
Sbjct: 3 PGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQ 52
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell
adhesion protein, immunoglobulin fold, I-SET fold, cell
adhesion glycoprotein; 1.9A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Length = 210
Score = 26.8 bits (58), Expect = 0.45
Identities = 8/39 (20%), Positives = 13/39 (33%)
Query: 25 HPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
P + + L C + A A + W +T L
Sbjct: 11 EPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSL 49
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 26.8 bits (59), Expect = 0.46
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 29 SKIEIRENQEITLECLVKNAKPA-AKIVWYRGNTELK 64
S+ EI Q+ TL CL P ++ W+ E+
Sbjct: 132 SEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVH 168
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor,
receptor tyrosine kinase, 3D-domain swapping,
transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 25.9 bits (57), Expect = 0.59
Identities = 6/28 (21%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 37 QEITLECLVKNAKPAAKIVWYRGNTELK 64
E +E +V+ P + W L+
Sbjct: 21 LEHCIEFVVR-GNPPPTLHWLHNGQPLR 47
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken
structural genomics/proteomics in RSGI, polxc, PHP, DRP
lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB:
3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Length = 575
Score = 25.8 bits (56), Expect = 1.0
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 20 IEIVGHPSNSKIEIRENQEITLECLVKNAK 49
+ ++ HP+ + R E E + + AK
Sbjct: 463 VHVLAHPTARLLGRRAPIEADWEAVFQKAK 492
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.4 bits (55), Expect = 1.4
Identities = 5/11 (45%), Positives = 8/11 (72%)
Query: 51 AAKIVWYRGNT 61
++V+YRG T
Sbjct: 1782 LVEVVFYRGMT 1792
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 25.4 bits (55), Expect = 1.4
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 32 EIRENQEITLECLVKNAKPAA-KIVWYRGNTELK 64
+ TL CL++N P + W +L
Sbjct: 230 WPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLP 263
Score = 24.2 bits (52), Expect = 3.5
Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 4/51 (7%)
Query: 14 FAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKP-AAKIVWYRGNTEL 63
F PP+ + S+ I L CLV P +I W +
Sbjct: 5 FTPPT---VKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVM 52
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 25.2 bits (54), Expect = 1.5
Identities = 4/43 (9%), Positives = 15/43 (34%), Gaps = 4/43 (9%)
Query: 22 IVGHPSNSKIEIRENQEITLECLVKNA--KPAAKIVWYRGNTE 62
+ + + + + + C+V+ K ++ W +
Sbjct: 8 LTVSSPQ--LRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDK 48
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication;
2.46A {Deinococcus radiodurans}
Length = 578
Score = 25.1 bits (54), Expect = 1.6
Identities = 4/30 (13%), Positives = 14/30 (46%)
Query: 20 IEIVGHPSNSKIEIRENQEITLECLVKNAK 49
+ ++GH + + R + L+ ++ +
Sbjct: 451 VTVLGHATGRLLLRRPGYALDLDAVLGACE 480
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse
IGG, zinc-finger, DNA-binding, RNA-binding, tripartite
motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus
musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Length = 207
Score = 25.2 bits (55), Expect = 1.7
Identities = 6/60 (10%), Positives = 18/60 (30%), Gaps = 5/60 (8%)
Query: 6 GPRTRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA-KIVWYRGNTELK 64
++ + + P E +++L C++ + P + W +
Sbjct: 98 KTISKTKGRPKAPQVYTLPPPK----EQMAKDKVSLTCMITDFFPEDITVEWESNGQPAE 153
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit,
conformation-specific, amyloid, immune system; 1.54A
{Oryctolagus cuniculus}
Length = 213
Score = 24.5 bits (54), Expect = 2.7
Identities = 8/49 (16%), Positives = 16/49 (32%), Gaps = 12/49 (24%)
Query: 16 PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
PPS+ + + + +T+ C+ P + W T
Sbjct: 121 PPSADLVA---TGT---------VTIVCVANKYFPDVTVTWEVDGTTQT 157
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 24.1 bits (52), Expect = 3.9
Identities = 7/57 (12%), Positives = 17/57 (29%), Gaps = 5/57 (8%)
Query: 9 TRLYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAA-KIVWYRGNTELK 64
++ + + P E ++++ C+VK P W +
Sbjct: 115 SKPEGTPRGPQVYTMAPPK----EEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQE 167
>3iz5_A 60S ribosomal protein L1 (L1P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_A
Length = 216
Score = 23.9 bits (52), Expect = 5.0
Identities = 7/29 (24%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 23 VGHPSNSKIEIRENQEITLECLVKNAKPA 51
VG+ S + +I++N ++++ LV
Sbjct: 168 VGNLSMDEKQIQQNIQMSVNFLVS-LLKK 195
>1pfc_A IGG1 PFC' FC; immunoglobulin; 3.12A {Cavia porcellus} SCOP:
b.1.1.2
Length = 113
Score = 23.5 bits (51), Expect = 6.1
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 16/60 (26%)
Query: 6 GPRTR--LYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIV-WYRGNTE 62
GP +Y PP + E+ + +++L C++ PA V W
Sbjct: 10 GPPRIPEVYLLPPPRN------------ELSKK-KVSLTCMITGFYPADINVEWDSSEPS 56
>3m1m_A ORF904; primase, polymerase, replication; 1.85A {Sulfolobus
islandicus}
Length = 335
Score = 23.7 bits (50), Expect = 6.1
Identities = 9/49 (18%), Positives = 14/49 (28%), Gaps = 1/49 (2%)
Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
S + H + K +E T L K +K+ L
Sbjct: 146 GLGSCVN-HLHCTTDKCPWKEQNYTTCYTLYNELKEISKVDLKSLLRFL 193
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 23.3 bits (50), Expect = 6.2
Identities = 4/40 (10%), Positives = 12/40 (30%)
Query: 24 GHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
G + + +TL + ++ W+ +
Sbjct: 7 GQGHLVHMTVVSGSNVTLNISESLPENYKQLTWFYTFDQK 46
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.394
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 938,940
Number of extensions: 39442
Number of successful extensions: 311
Number of sequences better than 10.0: 1
Number of HSP's gapped: 295
Number of HSP's successfully gapped: 206
Length of query: 65
Length of database: 6,701,793
Length adjustment: 36
Effective length of query: 29
Effective length of database: 5,696,637
Effective search space: 165202473
Effective search space used: 165202473
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.9 bits)