RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7728
(65 letters)
>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId:
9606]}
Length = 101
Score = 30.6 bits (68), Expect = 0.004
Identities = 6/44 (13%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 21 EIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
+I+ P + ++R + + L V W + +++
Sbjct: 2 QIIQFPED--QKVRAGESVELFGKVT-GTQPITCTWMKFRKQIQ 42
>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 95
Score = 30.6 bits (68), Expect = 0.004
Identities = 9/48 (18%), Positives = 13/48 (27%), Gaps = 8/48 (16%)
Query: 16 PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
P SI P++ + C P + W EL
Sbjct: 4 PTPSISDFEIPTS--------NIRRIICSTSGGFPEPHLSWLENGEEL 43
>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 30.0 bits (66), Expect = 0.008
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 5/47 (10%)
Query: 16 PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTE 62
PPS V PS L C ++ P ++ W++
Sbjct: 2 PPS-KPTVNIPS----SATIGNRAVLTCSEQDGSPPSEYTWFKDGIV 43
>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1
(VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 29.9 bits (66), Expect = 0.009
Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 26 PSNSKIEI----RENQEITLECLVKNAKPAAK--IVWYRGNTELK 64
P + +I + + IT++C V + P + I +G+ +K
Sbjct: 2 PKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMK 46
>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32)
{Human (Homo sapiens), III [TaxId: 9606]}
Length = 89
Score = 29.5 bits (65), Expect = 0.009
Identities = 5/30 (16%), Positives = 10/30 (33%)
Query: 29 SKIEIRENQEITLECLVKNAKPAAKIVWYR 58
+ +E I L C K+ + +
Sbjct: 10 PRWVFKEEDPIHLRCHSWKNTALHKVTYLQ 39
>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 89
Score = 29.3 bits (65), Expect = 0.012
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTE 62
+ P P I +++ Q++T+ C V PA +VW
Sbjct: 1 SAPK---YEQKPEKV-IVVKQGQDVTIPCKVT-GLPAPNVVWSHNAKP 43
>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 91
Score = 28.8 bits (63), Expect = 0.020
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 24 GHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYR 58
G P + + + Q + L C V I W +
Sbjct: 1 GAPVK--LTVSQGQPVKLNCSV-EGMEEPDIQWVK 32
>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor,
FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}
Length = 109
Score = 28.4 bits (62), Expect = 0.032
Identities = 7/42 (16%), Positives = 13/42 (30%), Gaps = 3/42 (7%)
Query: 22 IVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
G P+N ++ C V + I W + +
Sbjct: 8 QAGLPAN--ASTVVGGDVEFVCKVY-SDAQPHIQWIKHVEKN 46
>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 28.0 bits (61), Expect = 0.039
Identities = 5/38 (13%), Positives = 13/38 (34%)
Query: 25 HPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTE 62
+ N+ C + + I WY+ +++
Sbjct: 6 REEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSK 43
>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different
modules [TaxId: 9606]}
Length = 91
Score = 27.5 bits (60), Expect = 0.053
Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 3/36 (8%)
Query: 22 IVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWY 57
I+ P + + + E + C +P + W
Sbjct: 2 ILTKPRS--MTVYEGESARFSCDTD-GEPVPTVTWL 34
>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27
[TaxId: 9606]}
Length = 89
Score = 27.1 bits (59), Expect = 0.078
Identities = 4/38 (10%), Positives = 10/38 (26%), Gaps = 2/38 (5%)
Query: 20 IEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWY 57
IE+ +E+ + E + +
Sbjct: 2 IEVEKPLYG--VEVFVGETAHFEIELSEPDVHGQWKLK 37
>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 130
Score = 27.3 bits (59), Expect = 0.094
Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 16 PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTELK 64
PP I + ++ L+ + PA ++W + T+
Sbjct: 4 PPKIHLDCPGRIPDTIVVVAGNKLRLDVPIS-GDPAPTVIWQKAITQGN 51
>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 26.7 bits (58), Expect = 0.098
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 20 IEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTE 62
I + + + + LEC V ++ A + W++ E
Sbjct: 1 IMVTKQLED--TTAYCGERVELECEV--SEDDANVKWFKNGEE 39
>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 100
Score = 26.8 bits (58), Expect = 0.12
Identities = 9/45 (20%), Positives = 14/45 (31%), Gaps = 4/45 (8%)
Query: 16 PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGN 60
PP+ + S Q +TL C P + W +
Sbjct: 3 PPT---VQARQSIVNATANLGQSVTLVCDAD-GFPEPTMSWTKDG 43
>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32)
{Human (Homo sapiens), IIb [TaxId: 9606]}
Length = 85
Score = 26.5 bits (57), Expect = 0.12
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 15 APPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGN 60
APP ++ + P I + + +TL C ++ + I W+
Sbjct: 1 APPKAV-LKLEPQW--INVLQEDSVTLTCRGTHSPESDSIQWFHNG 43
>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different
modules [TaxId: 9606]}
Length = 98
Score = 26.4 bits (57), Expect = 0.15
Identities = 6/43 (13%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 21 EIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
+I + + + + V KP + WY+ ++
Sbjct: 6 KIFERIQS--QTVGQGSDAHFRVRVV-GKPDPECEWYKNGVKI 45
>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 105
Score = 26.7 bits (57), Expect = 0.16
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 25 HPSNSKIEIRENQEITLECLVKNAKPAAKIVWY 57
H S ++ I EN + L C +
Sbjct: 8 HSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKF 40
>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 91
Score = 25.9 bits (56), Expect = 0.19
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 6/45 (13%)
Query: 13 QFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWY 57
Q+AP P++ Q +TLEC P +I W
Sbjct: 2 QYAPSI---KAKFPAD--TYALTGQMVTLECFAF-GNPVPQIKWR 40
>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon
constant domain 3, CH3-epsilon {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 26.2 bits (57), Expect = 0.21
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 32 EIRENQEITLECLVKNAKPAAKIVWYRGN 60
++ + T+ CLV + P+ V +
Sbjct: 12 DLFIRKSPTITCLVVDLAPSKGTVNLTWS 40
>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 92
Score = 26.0 bits (56), Expect = 0.22
Identities = 6/34 (17%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 29 SKIEIRENQEITLECLVKNAKPAAKIVWYRGNTE 62
+ E +E ++ + C V + I+W +
Sbjct: 9 TPQEFKEGEDAVIVCDVV-SSLPPTIIWKHKGRD 41
>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 26.2 bits (56), Expect = 0.22
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 5/45 (11%)
Query: 16 PPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYRGN 60
PP + S+ I E + L C ++ P WY+
Sbjct: 2 PPR---VKAVKSS--EHINEGETAMLVCKSESVPPVTDWAWYKIT 41
>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 97
Score = 25.6 bits (55), Expect = 0.32
Identities = 4/38 (10%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 21 EIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWYR 58
E V + + + + C+ + P +++
Sbjct: 3 EPVPQYVSKDMMAKAGDVTMIYCMYG-SNPMGYPNYFK 39
>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon
constant domain 2, CH2-epsilon {Human (Homo sapiens)
[TaxId: 9606]}
Length = 104
Score = 25.4 bits (55), Expect = 0.38
Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 4/51 (7%)
Query: 14 FAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPA-AKIVWYRGNTEL 63
F PP+ + S+ I L CLV P +I W +
Sbjct: 2 FTPPT---VKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVM 49
>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma
constant domain 2, CH2-gamma {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 103
Score = 25.3 bits (55), Expect = 0.39
Identities = 7/40 (17%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 26 PSNSKIEIRENQEITLECLVKNAKPAAKIV---WYRGNTE 62
P +K + + C+V + V W+ + E
Sbjct: 6 PPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVE 45
>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 25.2 bits (54), Expect = 0.43
Identities = 3/29 (10%), Positives = 10/29 (34%)
Query: 29 SKIEIRENQEITLECLVKNAKPAAKIVWY 57
++ + +I L + + K +
Sbjct: 14 PAYQVSKGHKIRLTVELADHDAEVKWLKN 42
>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32)
{Human (Homo sapiens), IIb [TaxId: 9606]}
Length = 88
Score = 24.9 bits (53), Expect = 0.49
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 29 SKIEIRENQEITLECLVKNAKPAAKIVWYR 58
+E +E + I L C KP K+ +++
Sbjct: 8 PHLEFQEGETIVLRCHSWKDKPLVKVTFFQ 37
>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon
constant domain 4, CH4-epsilon {Human (Homo sapiens)
[TaxId: 9606]}
Length = 105
Score = 24.7 bits (53), Expect = 0.66
Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 16/60 (26%)
Query: 7 PRTR--LYQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPA-AKIVWYRGNTEL 63
PR +Y FA P + TL CL++N P + W +L
Sbjct: 1 PRAAPEVYAFATPE-------------WPGSRDKRTLACLIQNFMPEDISVQWLHNEVQL 47
>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 24.6 bits (52), Expect = 0.67
Identities = 9/36 (25%), Positives = 12/36 (33%)
Query: 28 NSKIEIRENQEITLECLVKNAKPAAKIVWYRGNTEL 63
S+ I LEC VK + W + N
Sbjct: 10 QSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTT 45
>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis
elegans) [TaxId: 6239]}
Length = 97
Score = 24.5 bits (52), Expect = 0.88
Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 3/37 (8%)
Query: 21 EIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWY 57
+ P E+ E Q C V A + W+
Sbjct: 3 RFIVKPYG--TEVGEGQSANFYCRVI-ASSPPVVTWH 36
>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)
[TaxId: 9103]}
Length = 102
Score = 24.1 bits (51), Expect = 1.0
Identities = 4/37 (10%), Positives = 11/37 (29%), Gaps = 2/37 (5%)
Query: 21 EIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWY 57
+ +E+ E +C V+ + +
Sbjct: 10 YFTKTILD--MEVVEGSAARFDCKVEGYPDPEVMWFK 44
>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG,
alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 23.9 bits (51), Expect = 1.4
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 8/48 (16%)
Query: 17 PSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPA-AKIVWYRGNTEL 63
P S+ + H + ++ L+CL + P + W R
Sbjct: 3 PPSVVVTSHQA-------PGEKKKLKCLAYDFYPGKIDVHWTRAGEVQ 43
>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha
constant domain 2, CH2-alpha {Human (Homo sapiens)
[TaxId: 9606]}
Length = 101
Score = 23.5 bits (50), Expect = 2.0
Identities = 5/32 (15%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 32 EIRENQEITLECLVKNAKPAAKIV--WYRGNT 61
++ E L C + + A+ + W +
Sbjct: 14 DLLLGSEANLTCTLTGLRDASGVTFTWTPSSG 45
>d1ro0a_ d.264.1.2 (A:) Bifunctional DNA primase/polymerase
N-terminal domain {Archaeon Sulfolobus islandicus
[TaxId: 43080]}
Length = 210
Score = 23.4 bits (50), Expect = 2.2
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 12 YQFAPPSSIEIVGHPSNSKIEIRENQEITLECLVKNAKPAAKI 54
Y S + + H + K +E T L K +K+
Sbjct: 139 YVLGLGSCVNHL-HCTTDKCPWKEQNYTTCYTLYNELKEISKV 180
>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 99
Score = 23.1 bits (49), Expect = 2.6
Identities = 6/36 (16%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 29 SKIEIRENQEITLECLVKNAKPAA-KIVWYRGNTEL 63
S+ + L C V P +I + ++
Sbjct: 11 SRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKI 46
>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans)
[TaxId: 6239]}
Length = 93
Score = 22.6 bits (47), Expect = 3.8
Identities = 7/37 (18%), Positives = 11/37 (29%), Gaps = 3/37 (8%)
Query: 21 EIVGHPSNSKIEIRENQEITLECLVKNAKPAAKIVWY 57
+I+ I+I+ LE P W
Sbjct: 4 KILTASRK--IKIKAGFTHNLEVDFI-GAPDPTATWT 37
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 235,141
Number of extensions: 7804
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 35
Length of query: 65
Length of database: 2,407,596
Length adjustment: 34
Effective length of query: 31
Effective length of database: 1,940,776
Effective search space: 60164056
Effective search space used: 60164056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)