Query psy7729
Match_columns 167
No_of_seqs 109 out of 613
Neff 4.3
Searched_HMMs 46136
Date Fri Aug 16 17:18:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7729.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7729hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05853 Ig6_Contactin-4 Sixth 99.1 9.9E-11 2.1E-15 84.7 5.4 63 2-70 23-85 (85)
2 cd05854 Ig6_Contactin-2 Sixth 99.0 8E-10 1.7E-14 78.3 5.8 63 2-70 23-85 (85)
3 cd05879 Ig_P0 Immunoglobulin ( 99.0 1.1E-09 2.3E-14 83.2 5.9 50 17-66 67-116 (116)
4 cd05888 Ig1_Nectin-4_like Frst 98.9 3.3E-09 7.2E-14 77.2 6.3 53 14-67 47-100 (100)
5 cd05881 Ig1_Necl-2 First (N-te 98.9 5.5E-09 1.2E-13 77.2 6.5 49 14-66 47-95 (95)
6 cd05715 Ig_P0-like Immunoglobu 98.8 8.1E-09 1.7E-13 76.4 6.0 50 17-66 67-116 (116)
7 cd05718 Ig1_PVR_like First imm 98.8 1.6E-08 3.5E-13 71.3 6.2 49 17-67 50-98 (98)
8 cd05717 Ig1_Necl-1-3_like Firs 98.8 1.7E-08 3.8E-13 71.6 6.0 48 15-66 48-95 (95)
9 cd04970 Ig6_Contactin_like Six 98.8 9.5E-09 2.1E-13 71.6 4.6 40 29-70 46-85 (85)
10 cd07701 Ig1_Necl-3 First (N-te 98.8 2E-08 4.2E-13 72.8 6.1 48 15-66 48-95 (95)
11 cd05882 Ig1_Necl-1 First (N-te 98.8 1.4E-08 3E-13 74.2 5.3 48 15-66 48-95 (95)
12 cd05880 Ig_EVA1 Immunoglobulin 98.8 1.6E-08 3.4E-13 75.6 5.6 50 17-66 66-115 (115)
13 cd05735 Ig8_DSCAM Eight immuno 98.8 3.8E-08 8.2E-13 70.0 7.3 55 17-73 32-88 (88)
14 cd05713 Ig_MOG_like Immunoglob 98.7 3.5E-08 7.7E-13 70.2 6.6 48 17-66 51-99 (100)
15 cd04983 IgV_TCR_alpha_like Imm 98.7 1.7E-08 3.7E-13 72.4 4.9 51 16-66 56-108 (109)
16 cd05886 Ig1_Nectin-1_like Firs 98.7 3E-08 6.5E-13 73.4 6.1 49 17-67 51-99 (99)
17 cd05712 Ig_Siglec_N Immunoglob 98.7 2.9E-08 6.2E-13 74.0 5.4 51 17-67 67-118 (119)
18 cd05762 Ig8_MLCK Eighth immuno 98.7 5.2E-08 1.1E-12 70.8 6.6 54 16-73 44-97 (98)
19 PF07686 V-set: Immunoglobulin 98.7 3.2E-08 7E-13 69.2 4.8 49 17-66 66-114 (114)
20 cd05846 Ig1_MRC-OX-2_like Firs 98.7 4.2E-08 9.1E-13 70.5 5.4 49 17-67 49-97 (97)
21 cd05887 Ig1_Nectin-3_like Firs 98.7 5.6E-08 1.2E-12 72.0 6.1 49 17-67 48-96 (96)
22 cd05892 Ig_Myotilin_C C-termin 98.7 5.3E-08 1.1E-12 68.1 5.6 47 17-66 29-75 (75)
23 cd00099 IgV Immunoglobulin var 98.6 2.8E-08 6.1E-13 70.3 3.9 50 17-66 54-105 (105)
24 cd05775 Ig_SLAM-CD84_like_N N- 98.6 5.6E-08 1.2E-12 70.4 5.3 46 17-67 52-97 (97)
25 cd05877 Ig_LP_like Immunoglobu 98.5 1.5E-07 3.3E-12 67.8 5.4 47 17-66 56-102 (106)
26 cd05771 IgC_Tapasin_R Tapasin- 98.5 8E-08 1.7E-12 72.8 4.1 44 30-75 1-44 (139)
27 cd07706 IgV_TCR_delta Immunogl 98.5 1.1E-07 2.3E-12 69.9 4.5 50 17-66 59-114 (116)
28 cd05878 Ig_Aggrecan_like Immun 98.5 2.1E-07 4.5E-12 69.2 5.8 52 14-67 54-107 (110)
29 cd05902 Ig_Neurocan Immunoglob 98.5 1.4E-07 3E-12 71.2 4.9 53 13-67 53-107 (110)
30 cd05744 Ig_Myotilin_C_like Imm 98.5 3.3E-07 7.1E-12 63.2 6.1 47 17-66 29-75 (75)
31 smart00406 IGv Immunoglobulin 98.5 8.6E-08 1.9E-12 64.0 2.7 33 17-49 49-81 (81)
32 cd05741 Ig_CEACAM_D1_like Firs 98.5 2E-07 4.3E-12 64.8 4.6 44 17-66 49-92 (92)
33 PF07679 I-set: Immunoglobulin 98.5 2.6E-07 5.6E-12 63.5 4.8 48 15-66 43-90 (90)
34 cd05714 Ig_CSPGs_LP Immunoglob 98.5 3.2E-07 7E-12 66.2 5.3 48 17-67 56-103 (106)
35 cd04976 Ig2_VEGFR Second immun 98.4 2.8E-07 6.1E-12 63.0 4.5 38 29-68 34-71 (71)
36 cd05900 Ig_Aggrecan Immunoglob 98.4 3.8E-07 8.3E-12 68.9 5.5 39 14-52 56-96 (112)
37 cd05893 Ig_Palladin_C C-termin 98.4 4.7E-07 1E-11 63.1 5.4 47 17-66 29-75 (75)
38 cd05726 Ig4_Robo Fhird immunog 98.4 1E-06 2.2E-11 62.0 6.1 49 16-71 38-86 (90)
39 cd05870 Ig5_NCAM-2 Fifth immun 98.4 8.9E-07 1.9E-11 63.4 5.9 46 17-66 53-98 (98)
40 cd05852 Ig5_Contactin-1 Fifth 98.4 6.3E-07 1.4E-11 62.0 4.8 45 15-66 29-73 (73)
41 cd05716 Ig_pIgR Immunoglobulin 98.4 8.5E-07 1.8E-11 63.1 5.5 37 17-53 51-87 (98)
42 cd04973 Ig1_FGFR First immunog 98.3 8.4E-07 1.8E-11 61.5 5.0 33 16-54 37-69 (79)
43 cd05867 Ig4_L1-CAM_like Fourth 98.3 9.7E-07 2.1E-11 60.3 5.2 36 30-67 41-76 (76)
44 cd04982 IgV_TCR_gamma Immunogl 98.3 6.9E-07 1.5E-11 65.3 4.7 36 17-52 64-99 (116)
45 cd05901 Ig_Versican Immunoglob 98.3 1.1E-06 2.4E-11 67.7 6.0 51 14-66 61-113 (117)
46 cd05760 Ig2_PTK7 Second immuno 98.3 1.2E-06 2.6E-11 60.4 5.4 38 30-67 38-75 (77)
47 cd05748 Ig_Titin_like Immunogl 98.3 1.7E-06 3.8E-11 58.4 6.1 47 16-66 28-74 (74)
48 cd05732 Ig5_NCAM-1_like Fifth 98.3 1.9E-06 4.2E-11 60.4 6.5 46 17-66 51-96 (96)
49 cd04974 Ig3_FGFR Third immunog 98.3 1.4E-06 3E-11 61.8 5.6 38 28-67 53-90 (90)
50 cd05858 Ig3_FGFR-2 Third immun 98.3 1.1E-06 2.5E-11 61.9 5.1 37 29-67 54-90 (90)
51 cd05889 Ig1_DNAM-1_like First 98.3 1.6E-06 3.5E-11 64.1 6.1 37 17-54 48-84 (96)
52 cd05763 Ig_1 Subgroup of the i 98.3 1.7E-06 3.7E-11 58.7 5.7 45 17-67 31-75 (75)
53 cd05725 Ig3_Robo Third immunog 98.3 1.4E-06 3.1E-11 58.2 4.8 43 17-66 27-69 (69)
54 cd04977 Ig1_NCAM-1_like First 98.3 2.8E-06 6.1E-11 60.7 6.6 48 17-66 45-92 (92)
55 cd05865 Ig1_NCAM-1 First immun 98.3 3.3E-06 7.1E-11 61.6 7.0 49 17-67 48-96 (96)
56 cd04984 IgV_L_lambda Immunoglo 98.3 1.2E-06 2.5E-11 62.6 4.5 47 17-66 52-98 (98)
57 cd05899 IgV_TCR_beta Immunoglo 98.3 1.1E-06 2.4E-11 64.0 4.4 49 17-66 60-110 (110)
58 cd05734 Ig7_DSCAM Seventh immu 98.3 2E-06 4.2E-11 59.1 5.4 46 15-66 34-79 (79)
59 cd05738 Ig2_RPTP_IIa_LAR_like 98.3 1.6E-06 3.5E-11 59.2 4.8 44 17-66 30-73 (74)
60 cd05745 Ig3_Peroxidasin Third 98.3 1.9E-06 4.1E-11 58.6 5.0 35 30-66 40-74 (74)
61 cd07700 IgV_CD8_beta Immunoglo 98.3 1.2E-06 2.6E-11 64.1 4.2 49 17-66 59-107 (107)
62 cd05863 Ig2_VEGFR-3 Second imm 98.2 2.8E-06 6.1E-11 58.7 5.8 39 28-68 29-67 (67)
63 cd05871 Ig_Semaphorin_classIII 98.2 2.4E-06 5.3E-11 61.6 5.6 45 17-68 46-90 (91)
64 cd05894 Ig_C5_MyBP-C C5 immuno 98.2 3.7E-06 8.1E-11 59.6 6.4 46 17-66 41-86 (86)
65 cd05861 Ig1_PDGFR-alphabeta Fr 98.2 3.5E-06 7.6E-11 59.3 5.9 40 28-67 44-83 (84)
66 cd05730 Ig3_NCAM-1_like Third 98.2 3.2E-06 7E-11 59.6 5.6 37 30-68 58-94 (95)
67 cd05773 Ig8_hNephrin_like Eigh 98.2 4.7E-06 1E-10 61.6 6.7 53 17-71 54-109 (109)
68 cd05866 Ig1_NCAM-2 First immun 98.2 3.8E-06 8.2E-11 61.0 5.9 48 16-66 44-91 (92)
69 cd04978 Ig4_L1-NrCAM_like Four 98.2 2.6E-06 5.7E-11 57.2 4.6 37 29-67 40-76 (76)
70 cd05724 Ig2_Robo Second immuno 98.2 3.4E-06 7.3E-11 57.7 5.2 36 30-66 51-86 (86)
71 cd07690 Ig1_CD4 First immunogl 98.2 1.2E-06 2.6E-11 64.4 3.0 38 16-53 50-88 (94)
72 cd05743 Ig_Perlecan_D2_like Im 98.2 3.1E-06 6.8E-11 58.2 4.8 39 14-54 28-66 (78)
73 cd05895 Ig_Pro_neuregulin-1 Im 98.2 5.5E-06 1.2E-10 56.3 5.8 28 27-54 41-68 (76)
74 cd05737 Ig_Myomesin_like_C C-t 98.2 6.4E-06 1.4E-10 58.3 6.4 37 17-54 46-82 (92)
75 cd05742 Ig1_VEGFR_like First i 98.2 2.9E-06 6.2E-11 58.9 4.4 38 27-66 46-83 (84)
76 cd04975 Ig4_SCFR_like Fourth i 98.2 6.3E-06 1.4E-10 60.8 6.4 38 29-68 64-101 (101)
77 cd04979 Ig_Semaphorin_C Immuno 98.2 3.8E-06 8.1E-11 58.9 5.0 36 31-67 52-87 (89)
78 cd04980 IgV_L_kappa Immunoglob 98.1 2.4E-06 5.2E-11 61.8 3.9 47 17-66 60-106 (106)
79 cd05851 Ig3_Contactin-1 Third 98.1 5.5E-06 1.2E-10 58.7 5.5 35 30-66 53-87 (88)
80 cd05868 Ig4_NrCAM Fourth immun 98.1 4E-06 8.8E-11 57.8 4.6 35 31-67 42-76 (76)
81 cd07702 Ig2_VEGFR-1 Second imm 98.1 3.8E-06 8.2E-11 58.9 4.4 36 30-67 36-71 (72)
82 cd05891 Ig_M-protein_C C-termi 98.1 9E-06 2E-10 58.0 6.4 47 17-68 46-92 (92)
83 cd04969 Ig5_Contactin_like Fif 98.1 5.2E-06 1.1E-10 56.1 4.7 44 16-66 30-73 (73)
84 cd05765 Ig_3 Subgroup of the i 98.1 4.6E-06 9.9E-11 56.5 4.1 36 29-66 46-81 (81)
85 cd05869 Ig5_NCAM-1 Fifth immun 98.1 8.9E-06 1.9E-10 58.1 5.7 46 17-66 52-97 (97)
86 cd05859 Ig4_PDGFR-alpha Fourth 98.1 4.3E-06 9.4E-11 61.4 4.2 38 29-68 64-101 (101)
87 cd04971 Ig_TrKABC_d5 Fifth dom 98.1 6.4E-06 1.4E-10 58.2 4.8 37 27-67 43-79 (81)
88 cd05723 Ig4_Neogenin Fourth im 98.1 1E-05 2.3E-10 54.8 5.6 43 17-66 29-71 (71)
89 PHA03376 BARF1; Provisional 98.1 8.3E-06 1.8E-10 69.0 6.1 36 17-54 76-111 (221)
90 cd05736 Ig2_Follistatin_like S 98.1 1.3E-05 2.9E-10 54.3 5.9 44 17-66 30-73 (76)
91 cd05774 Ig_CEACAM_D1 First imm 98.1 1.1E-05 2.3E-10 60.5 5.9 32 17-53 62-93 (105)
92 cd05857 Ig2_FGFR Second immuno 98.0 1.3E-05 2.9E-10 54.9 5.7 37 28-66 49-85 (85)
93 cd05746 Ig4_Peroxidasin Fourth 98.0 7.5E-06 1.6E-10 55.1 4.2 41 17-64 28-68 (69)
94 cd04968 Ig3_Contactin_like Thi 98.0 8.4E-06 1.8E-10 56.8 4.5 37 29-67 52-88 (88)
95 smart00410 IG_like Immunoglobu 98.0 2.7E-05 5.9E-10 50.2 6.6 47 16-66 39-85 (86)
96 smart00409 IG Immunoglobulin. 98.0 2.7E-05 5.9E-10 50.2 6.6 47 16-66 39-85 (86)
97 cd05756 Ig1_IL1R_like First im 98.0 1.3E-05 2.8E-10 58.1 5.3 35 30-66 60-94 (94)
98 cd05728 Ig4_Contactin-2-like F 98.0 1.2E-05 2.6E-10 56.2 4.9 34 31-66 52-85 (85)
99 cd05876 Ig3_L1-CAM Third immun 98.0 1E-05 2.3E-10 54.8 4.2 36 29-66 35-70 (71)
100 cd05740 Ig_CEACAM_D4 Fourth im 98.0 1.4E-05 2.9E-10 57.5 5.0 36 30-66 55-90 (91)
101 cd05856 Ig2_FGFRL1-like Second 98.0 1.1E-05 2.3E-10 54.3 4.2 27 28-54 46-72 (82)
102 cd04981 IgV_H Immunoglobulin ( 98.0 9.1E-06 2E-10 60.8 4.2 50 17-66 63-116 (117)
103 cd05864 Ig2_VEGFR-2 Second imm 97.9 1.2E-05 2.6E-10 55.5 3.9 37 30-68 34-70 (70)
104 cd05731 Ig3_L1-CAM_like Third 97.9 1.4E-05 3.1E-10 52.7 3.8 36 29-66 35-70 (71)
105 cd04972 Ig_TrkABC_d4 Fourth do 97.9 2.8E-05 6.1E-10 54.6 5.3 37 28-66 54-90 (90)
106 cd05764 Ig_2 Subgroup of the i 97.9 2.9E-05 6.4E-10 52.2 5.2 35 30-66 40-74 (74)
107 cd05873 Ig_Sema4D_like Immunog 97.9 2.2E-05 4.8E-10 57.1 4.8 37 17-59 41-77 (87)
108 cd05862 Ig1_VEGFR First immuno 97.9 1.9E-05 4E-10 56.1 4.2 39 27-67 47-85 (86)
109 cd05747 Ig5_Titin_like M5, fif 97.9 4.3E-05 9.3E-10 53.9 6.0 37 16-54 47-83 (92)
110 cd05897 Ig2_IL1R2_like Second 97.8 3.6E-05 7.8E-10 57.0 5.3 38 30-67 55-94 (95)
111 cd05896 Ig1_IL1RAPL-1_like Fir 97.8 5.4E-05 1.2E-09 57.6 6.2 30 18-53 64-93 (104)
112 cd05722 Ig1_Neogenin First imm 97.8 3.9E-05 8.5E-10 54.3 5.2 35 31-66 55-95 (95)
113 cd05757 Ig2_IL1R_like Second i 97.8 3.4E-05 7.3E-10 56.0 4.7 28 28-55 50-77 (92)
114 cd05720 Ig_CD8_alpha Immunoglo 97.8 1.7E-05 3.6E-10 58.1 3.0 34 17-52 58-91 (104)
115 KOG4221|consensus 97.8 2.8E-05 6.2E-10 78.8 5.3 63 2-76 273-335 (1381)
116 cd05729 Ig2_FGFR_like Second i 97.8 9.9E-05 2.2E-09 49.6 6.3 37 27-65 48-84 (85)
117 cd07693 Ig1_Robo First immunog 97.8 5.9E-05 1.3E-09 52.0 5.2 32 35-67 69-100 (100)
118 cd05750 Ig_Pro_neuregulin Immu 97.7 0.00016 3.5E-09 48.1 5.9 28 27-54 40-67 (75)
119 cd05855 Ig_TrkB_d5 Fifth domai 97.7 0.00011 2.4E-09 52.5 5.3 27 28-54 42-68 (79)
120 cd05753 Ig2_FcgammaR_like Seco 97.6 4E-05 8.7E-10 54.1 2.9 39 27-66 45-83 (83)
121 cd05850 Ig1_Contactin-2 First 97.6 0.00014 3.1E-09 52.0 5.4 33 31-64 59-92 (94)
122 PHA02826 IL-1 receptor-like pr 97.6 7.9E-05 1.7E-09 62.5 4.6 39 29-69 97-135 (227)
123 PF00047 ig: Immunoglobulin do 97.6 4.7E-05 1E-09 49.4 2.5 19 31-49 46-64 (64)
124 KOG3513|consensus 97.6 0.00014 2.9E-09 73.1 6.5 52 17-76 379-431 (1051)
125 KOG3513|consensus 97.6 0.00011 2.4E-09 73.7 5.8 60 12-78 466-525 (1051)
126 cd05848 Ig1_Contactin-5 First 97.5 0.00014 3E-09 52.2 4.5 24 31-54 59-83 (94)
127 cd05733 Ig6_L1-CAM_like Sixth 97.5 0.00019 4.1E-09 49.4 4.8 34 17-54 30-67 (77)
128 cd05752 Ig1_FcgammaR_like Frst 97.5 0.00018 3.8E-09 50.6 4.3 44 18-66 32-78 (78)
129 cd05849 Ig1_Contactin-1 First 97.5 0.00022 4.8E-09 51.3 4.8 34 31-65 58-92 (93)
130 smart00408 IGc2 Immunoglobulin 97.5 0.00014 3E-09 44.8 3.2 25 28-52 37-61 (63)
131 PHA02987 Ig domain OX-2-like p 97.4 0.00034 7.4E-09 58.4 6.3 57 17-74 73-129 (189)
132 cd05754 Ig3_Perlecan_like Thir 97.4 0.00015 3.4E-09 50.1 3.2 34 29-64 51-84 (85)
133 cd05758 Ig5_KIRREL3-like Fifth 97.4 0.00044 9.6E-09 49.4 5.6 38 17-54 49-89 (98)
134 PHA02785 IL-beta-binding prote 97.3 0.00043 9.4E-09 60.2 5.6 38 30-67 177-216 (326)
135 PHA02826 IL-1 receptor-like pr 97.3 0.00037 7.9E-09 58.5 4.8 47 16-66 178-226 (227)
136 cd05727 Ig2_Contactin-2-like S 97.2 0.00049 1.1E-08 51.2 4.3 26 29-54 59-84 (96)
137 cd05872 Ig_Sema4B_like Immunog 97.2 0.00088 1.9E-08 48.7 5.5 22 31-52 48-69 (85)
138 cd05739 Ig3_RPTP_IIa_LAR_like 97.2 0.00073 1.6E-08 46.0 4.6 31 30-64 38-68 (69)
139 cd05721 IgV_CTLA-4 Immunoglobu 97.2 0.00083 1.8E-08 52.1 5.3 38 16-53 60-97 (115)
140 PHA02633 hypothetical protein; 97.2 0.00079 1.7E-08 47.5 4.6 37 28-68 16-54 (63)
141 cd05751 Ig1_LILRB1_like First 97.1 0.00097 2.1E-08 47.4 4.8 25 28-52 51-75 (91)
142 cd05874 Ig6_NrCAM Sixth immuno 97.1 0.0013 2.9E-08 45.6 5.1 25 30-54 39-67 (77)
143 cd04967 Ig1_Contactin First Ig 97.1 0.00093 2E-08 47.0 4.3 24 31-54 59-83 (91)
144 cd05759 Ig2_KIRREL3-like Secon 97.0 0.0022 4.7E-08 44.1 5.4 36 31-66 47-82 (82)
145 cd05875 Ig6_hNeurofascin_like 96.9 0.0021 4.5E-08 44.6 5.1 35 16-54 29-67 (77)
146 PHA02785 IL-beta-binding prote 96.9 0.0021 4.6E-08 55.9 6.1 25 29-53 291-315 (326)
147 cd00096 Ig Immunoglobulin doma 96.9 0.0011 2.5E-08 39.7 3.1 29 25-53 38-66 (74)
148 KOG4222|consensus 96.9 0.00081 1.8E-08 68.2 3.6 57 17-79 269-325 (1281)
149 KOG4194|consensus 96.9 0.0011 2.4E-08 64.4 4.2 52 29-81 573-624 (873)
150 cd05845 Ig2_L1-CAM_like Second 96.8 0.0012 2.6E-08 49.1 3.4 35 14-53 47-82 (95)
151 KOG4222|consensus 96.8 0.0018 3.9E-08 65.9 5.2 60 17-82 179-238 (1281)
152 PF13927 Ig_3: Immunoglobulin 96.8 0.0012 2.6E-08 42.6 2.6 26 26-51 50-75 (75)
153 KOG4194|consensus 96.7 0.003 6.5E-08 61.5 5.7 44 29-74 668-711 (873)
154 PF13895 Ig_2: Immunoglobulin 96.6 0.0018 3.9E-08 42.5 2.8 34 32-66 47-80 (80)
155 cd05898 Ig5_KIRREL3 Fifth immu 96.6 0.0081 1.8E-07 44.6 6.2 38 17-54 49-89 (98)
156 cd05749 Ig2_Tyro3_like Second 95.9 0.0079 1.7E-07 42.6 3.0 32 30-64 49-80 (81)
157 cd05885 Ig2_Necl-4 Second immu 95.9 0.028 6.1E-07 40.5 5.8 36 31-66 44-80 (80)
158 cd05711 Ig_FcalphaRI Immunoglo 95.9 0.01 2.3E-07 42.7 3.6 25 28-52 53-77 (94)
159 cd07694 Ig2_CD4 Second immunog 95.2 0.061 1.3E-06 40.1 5.6 38 27-68 48-85 (88)
160 PHA02914 Immunoglobulin-like d 95.1 0.041 8.9E-07 51.3 5.4 44 27-73 78-121 (500)
161 cd05860 Ig4_SCFR Fourth immuno 94.3 0.099 2.1E-06 39.6 5.0 25 30-54 65-89 (101)
162 KOG4221|consensus 94.3 0.077 1.7E-06 54.8 5.6 49 13-67 181-229 (1381)
163 PHA03282 envelope glycoprotein 93.9 0.18 3.9E-06 47.8 6.8 62 16-85 116-177 (540)
164 cd00098 IgC Immunoglobulin Con 93.2 0.22 4.7E-06 34.4 4.8 24 31-54 63-86 (95)
165 PF11465 Receptor_2B4: Natural 92.6 0.15 3.4E-06 39.4 3.6 34 17-54 62-95 (108)
166 PF08204 V-set_CD47: CD47 immu 92.4 0.081 1.8E-06 41.9 1.9 48 15-66 72-119 (130)
167 PHA03269 envelope glycoprotein 91.9 0.53 1.1E-05 44.9 6.9 60 17-76 276-336 (566)
168 PF07354 Sp38: Zona-pellucida- 91.5 0.24 5.3E-06 43.6 4.0 41 8-53 19-60 (271)
169 cd07705 Ig2_Necl-1 Second immu 90.3 1.1 2.4E-05 31.5 5.8 35 32-66 48-83 (83)
170 PHA03270 envelope glycoprotein 89.9 1.1 2.3E-05 42.2 6.9 58 17-76 171-228 (466)
171 cd05883 Ig2_Necl-2 Second immu 89.8 1.4 3.1E-05 31.9 6.1 36 31-68 45-81 (82)
172 PHA03273 envelope glycoprotein 89.4 0.93 2E-05 42.8 6.1 58 17-76 181-244 (486)
173 cd05761 Ig2_Necl-1-4_like Seco 89.1 1.4 3.1E-05 30.5 5.5 23 32-54 47-69 (82)
174 cd05772 IgC_SIRP Signal-regula 85.8 3.5 7.7E-05 30.9 6.4 34 37-70 75-111 (111)
175 cd05770 IgC_beta2m Class I maj 83.6 3.1 6.7E-05 30.4 5.1 19 36-54 66-84 (93)
176 cd05884 Ig2_Necl-3 Second immu 80.9 4.6 0.0001 28.5 5.0 24 31-54 47-70 (83)
177 PHA03271 envelope glycoprotein 80.4 6.3 0.00014 37.3 6.9 58 17-76 194-254 (490)
178 cd07699 IgC_L Immunoglobulin C 78.4 3.7 7.9E-05 29.9 3.9 24 31-54 67-90 (100)
179 PF07654 C1-set: Immunoglobuli 77.6 4.5 9.7E-05 27.8 4.0 29 26-54 49-78 (83)
180 cd07698 IgC_MHC_I_alpha3 Class 77.1 8.5 0.00018 27.2 5.4 28 27-54 56-84 (93)
181 smart00407 IGc1 Immunoglobulin 77.0 8.2 0.00018 26.2 5.1 23 31-53 49-71 (75)
182 cd05767 IgC_MHC_II_alpha Class 75.5 9 0.0002 27.9 5.3 17 38-54 69-85 (94)
183 cd05719 Ig2_PVR_like Second im 75.2 9.8 0.00021 27.7 5.5 35 31-66 60-95 (95)
184 PF01688 Herpes_gI: Alphaherpe 75.0 7.5 0.00016 31.9 5.2 28 27-54 121-148 (161)
185 cd05768 IgC_CH4 CH4 domain (fo 73.3 6.7 0.00015 28.8 4.2 15 41-55 79-93 (102)
186 PHA02982 hypothetical protein; 72.4 6.7 0.00015 34.2 4.5 27 27-53 97-123 (251)
187 cd05771 IgC_Tapasin_R Tapasin- 72.2 9.7 0.00021 28.5 4.9 24 31-54 109-132 (139)
188 cd07703 Ig2_Nectin-2_like Seco 70.1 14 0.00029 27.2 5.2 35 31-66 60-95 (95)
189 PF11622 DUF3251: Protein of u 69.3 9.4 0.0002 31.6 4.6 32 12-44 47-78 (165)
190 cd07696 IgC_CH3 CH3 domain (th 67.9 12 0.00026 27.2 4.5 14 41-54 74-87 (96)
191 PHA03290 envelope glycoprotein 67.6 9 0.00019 35.1 4.5 42 27-70 126-167 (357)
192 PHA03282 envelope glycoprotein 66.8 5.2 0.00011 38.3 2.9 26 28-53 331-356 (540)
193 PHA03292 envelope glycoprotein 66.2 12 0.00026 34.9 5.1 41 27-69 125-165 (413)
194 cd05847 IgC_CH2_IgE CH2 domain 62.5 14 0.00031 26.7 4.0 22 32-53 65-86 (94)
195 cd07697 IgC_TCR_gamma T cell r 62.0 18 0.00039 26.6 4.5 11 43-53 75-85 (96)
196 PHA03286 envelope glycoprotein 62.0 8.5 0.00018 36.6 3.4 33 18-53 298-330 (492)
197 PF05790 C2-set: Immunoglobuli 61.3 19 0.00041 25.8 4.4 21 31-51 44-64 (80)
198 cd05766 IgC_MHC_II_beta Class 60.2 31 0.00068 24.8 5.4 19 36-54 66-84 (94)
199 PF10572 UPF0556: Uncharacteri 59.2 29 0.00063 28.6 5.6 39 26-66 58-97 (158)
200 cd07691 Ig_CD3_gamma_delta Imm 58.4 13 0.00027 26.7 3.0 34 29-68 32-65 (69)
201 PF02480 Herpes_gE: Alphaherpe 58.0 6.6 0.00014 36.5 1.9 27 27-53 266-292 (439)
202 cd05769 IgC_TCR_beta T cell re 56.7 42 0.0009 25.5 5.8 23 32-54 70-93 (115)
203 KOG1480|consensus 55.7 8 0.00017 39.1 2.2 27 28-54 181-207 (909)
204 cd04985 IgC_CH1 CH1 domain (fi 52.8 29 0.00064 25.1 4.3 12 42-53 76-87 (95)
205 PHA02914 Immunoglobulin-like d 51.3 22 0.00048 33.7 4.2 36 17-52 329-368 (500)
206 COG3536 Uncharacterized protei 50.7 20 0.00043 28.3 3.2 40 10-49 51-90 (120)
207 KOG3515|consensus 50.1 16 0.00034 36.5 3.2 50 29-79 162-211 (741)
208 PF11327 DUF3129: Protein of u 46.9 48 0.001 27.4 5.1 30 26-55 89-118 (184)
209 PHA03189 UL14 tegument protein 45.5 36 0.00079 31.1 4.5 47 27-76 131-182 (348)
210 PHA03289 envelope glycoprotein 44.8 36 0.00079 31.2 4.4 43 28-72 120-162 (352)
211 cd07704 Ig2_Nectin-3-4_like Se 44.6 64 0.0014 24.0 5.1 30 37-66 67-97 (97)
212 PF03921 ICAM_N: Intercellular 44.5 51 0.0011 24.5 4.5 40 28-71 51-90 (91)
213 PHA03240 envelope glycoprotein 43.6 20 0.00043 31.4 2.5 39 28-66 103-143 (258)
214 PHA03283 envelope glycoprotein 42.9 23 0.00049 34.3 3.0 27 27-53 312-338 (542)
215 KOG4597|consensus 42.7 29 0.00062 33.5 3.6 39 26-66 253-291 (560)
216 cd01289 FabA_like Domain of un 41.8 61 0.0013 24.8 4.7 51 17-70 84-138 (138)
217 COG5475 Uncharacterized small 40.9 38 0.00082 23.8 3.1 25 28-54 16-40 (60)
218 PHA02865 MHC-like TNF binding 38.8 64 0.0014 29.5 5.0 33 21-53 271-304 (338)
219 PRK11530 hypothetical protein; 38.7 45 0.00098 28.1 3.8 19 26-44 79-97 (183)
220 PF10698 DUF2505: Protein of u 36.8 56 0.0012 25.5 3.9 51 31-81 72-125 (159)
221 PHA02894 hypothetical protein; 35.6 22 0.00049 27.0 1.4 30 5-37 23-52 (97)
222 smart00112 CA Cadherin repeats 34.9 1.3E+02 0.0029 19.7 6.4 33 36-68 38-71 (79)
223 PF02480 Herpes_gE: Alphaherpe 34.8 13 0.00028 34.6 0.0 26 28-53 87-112 (439)
224 PHA03291 envelope glycoprotein 33.8 79 0.0017 29.5 4.8 28 27-54 126-153 (401)
225 PHA03283 envelope glycoprotein 32.4 1E+02 0.0023 29.9 5.6 47 17-68 124-170 (542)
226 PHA03281 envelope glycoprotein 31.4 43 0.00094 32.8 2.9 27 27-53 472-498 (642)
227 PF09315 DUF1973: Domain of un 31.4 1.1E+02 0.0024 25.0 5.0 34 18-52 68-101 (179)
228 TIGR01749 fabA beta-hydroxyacy 31.0 84 0.0018 25.4 4.1 54 17-72 107-168 (169)
229 PF15096 G6B: G6B family 30.4 40 0.00086 29.0 2.2 27 37-68 81-107 (224)
230 PF10651 DUF2479: Domain of un 29.8 69 0.0015 25.4 3.4 30 24-53 78-107 (170)
231 PF03422 CBM_6: Carbohydrate b 29.4 1.7E+02 0.0037 21.0 5.2 22 31-52 33-54 (125)
232 cd07692 Ig_CD3_epsilon Immunog 29.2 57 0.0012 23.0 2.5 21 31-52 36-56 (65)
233 PF00630 Filamin: Filamin/ABP2 28.5 2E+02 0.0044 19.8 6.4 27 37-68 64-90 (101)
234 cd05755 Ig2_ICAM-1_like Second 27.5 89 0.0019 23.2 3.5 25 29-54 61-86 (100)
235 PRK02693 apocytochrome f; Revi 26.6 1.1E+02 0.0023 27.8 4.3 24 31-54 204-227 (312)
236 cd00031 CA Cadherin repeat dom 26.4 2.7E+02 0.006 21.0 6.1 32 37-68 60-92 (199)
237 PHA03286 envelope glycoprotein 25.5 1.8E+02 0.0039 28.0 5.8 37 30-67 127-163 (492)
238 PF10989 DUF2808: Protein of u 24.9 2.2E+02 0.0049 22.1 5.5 36 18-53 90-129 (146)
239 COG3978 Acetolactate synthase 24.8 88 0.0019 23.4 2.9 28 40-67 25-52 (86)
240 KOG4532|consensus 23.7 97 0.0021 28.3 3.5 32 18-52 184-215 (344)
241 cd02854 Glycogen_branching_enz 23.5 78 0.0017 23.3 2.5 37 13-51 13-49 (99)
242 PF08670 MEKHLA: MEKHLA domain 23.3 59 0.0013 26.2 1.9 13 40-52 130-142 (148)
243 PF01483 P_proprotein: Proprot 22.3 39 0.00084 23.6 0.6 22 23-44 57-79 (87)
244 PF14343 PrcB_C: PrcB C-termin 22.0 2.5E+02 0.0054 18.7 4.5 30 22-52 8-37 (60)
245 cd04986 IgC_CH2 CH2 domain (se 22.0 1.3E+02 0.0028 22.4 3.4 11 43-53 79-89 (99)
246 CHL00037 petA cytochrome f 21.1 1.4E+02 0.003 27.2 4.0 22 30-51 210-231 (320)
247 PF01537 Herpes_glycop_D: Herp 21.0 2.6E+02 0.0057 21.8 5.1 36 15-53 80-115 (124)
248 cd00603 IPT_PCSR IPT domain of 20.9 2.5E+02 0.0054 19.1 4.6 29 15-51 15-46 (90)
249 PF13754 Big_3_4: Bacterial Ig 20.3 2.6E+02 0.0056 18.1 5.2 24 26-52 10-33 (54)
250 PF02922 CBM_48: Carbohydrate- 20.3 1.8E+02 0.0039 19.5 3.7 34 17-51 23-57 (85)
251 PF11350 DUF3152: Protein of u 20.2 1.6E+02 0.0036 25.1 4.1 37 6-42 59-96 (203)
No 1
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.12 E-value=9.9e-11 Score=84.75 Aligned_cols=63 Identities=24% Similarity=0.321 Sum_probs=47.5
Q ss_pred CCccccCCCCCCCCCCCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEecCC
Q psy7729 2 AYRSAYGFNSIIPGFPSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVILPQ 70 (167)
Q Consensus 2 kdG~~LG~~~~lpg~~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVLVPP 70 (167)
|||..|.+.. ...||.+++.. ....+|.|+||+..|+|.|+|.+.+..+ ...+.|.|+|++||
T Consensus 23 ~dg~~i~~~~---~~~~~~~~~~~-~~~~~L~I~nv~~~dsG~YtC~a~n~~~--~~~a~a~L~V~~pP 85 (85)
T cd05853 23 FNGHLIDFQK---DGDHFERVGGQ-DSAGDLMIRSIQLKHAGKYVCMVQTSVD--KLSAAADLIVRGPP 85 (85)
T ss_pred ECCEECcccC---CCccEEEeccC-CCCCcEEEecCCHHHCEEEEEEEEcccC--ceEEEEEEEEecCC
Confidence 5666664331 12477776531 2345999999999999999999999875 35689999999999
No 2
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.00 E-value=8e-10 Score=78.31 Aligned_cols=63 Identities=19% Similarity=0.200 Sum_probs=44.8
Q ss_pred CCccccCCCCCCCCCCCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEecCC
Q psy7729 2 AYRSAYGFNSIIPGFPSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVILPQ 70 (167)
Q Consensus 2 kdG~~LG~~~~lpg~~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVLVPP 70 (167)
|||..|..... ..||+++.. .....+|.|.+|+..|+|.|+|.+.+..+ ...+.++|.|+.||
T Consensus 23 ~~g~~i~~~~~---~~~~~~~~~-~~~~~~L~I~~v~~~D~G~YtC~A~n~~g--~~~~~~~L~V~~~P 85 (85)
T cd05854 23 LDDFPIDLDKP---NGHYRRMEV-KETIGDLVIVNAQLSHAGTYTCTAQTVVD--SASASATLVVRGPP 85 (85)
T ss_pred ECCeEccccCC---CCcEEEEEe-cceEeEEEEccCChhhCeEEEEEEecCCC--CEEEEEEEEEECCC
Confidence 45655543322 235543321 22346999999999999999999999875 35579999999998
No 3
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.97 E-value=1.1e-09 Score=83.24 Aligned_cols=50 Identities=24% Similarity=0.282 Sum_probs=42.1
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
+|+++.|+.+.++.||+|+||+.+|+|+|+|+|.+.++..+..+.++|.|
T Consensus 67 ~Rv~f~g~~~~~daSI~I~nv~~sD~G~Y~C~v~n~p~~~~~~~~~~l~v 116 (116)
T cd05879 67 ERIEWVGNPSRKDGSIVIHNLDYTDNGTFTCDVKNPPDIVGKSSQVTLYV 116 (116)
T ss_pred CceEEeCCCCcCeeEEEEccCCcccCEEEEEEEEcCCCcCCceeEEEEEC
Confidence 69999999999999999999999999999999999876433335666654
No 4
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.91 E-value=3.3e-09 Score=77.19 Aligned_cols=53 Identities=19% Similarity=0.181 Sum_probs=43.5
Q ss_pred CCC-CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEe
Q psy7729 14 PGF-PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVI 67 (167)
Q Consensus 14 pg~-~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVL 67 (167)
+.| +|.+|.++...++++|+|+||+.+|+|+|.|.|.+.+.+. ..+.+.|+|+
T Consensus 47 ~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C~v~~~p~g~-~~~~~~L~V~ 100 (100)
T cd05888 47 HAYEGRVRFETPNPIADGALILRNAVQADEGKYKCRVITFPAGN-FEAELVLTVW 100 (100)
T ss_pred CCccCcEEEeCCCCCCceEEEEecCccccceEEEEEEEeCCCCC-eeeEEEEEeC
Confidence 344 7999988777789999999999999999999999865432 4578888884
No 5
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.87 E-value=5.5e-09 Score=77.22 Aligned_cols=49 Identities=27% Similarity=0.367 Sum_probs=38.8
Q ss_pred CCCCCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 14 PGFPSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 14 pg~~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
..++||++.. .+...|+|+|++|+.+|+|.|+||++..+ +....++|+|
T Consensus 47 ~~d~Rf~~~~-~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~p---~~~~~~~~~~ 95 (95)
T cd05881 47 LKDSRFQLVN-FSSNELRVSLSNVSLSDEGRYFCQLYTDP---PQEAYTTITV 95 (95)
T ss_pred cCCcCEEEEe-CCCCEEEEEECcCCcccCEEEEEEEEccc---CeEEEEEEEC
Confidence 4678999885 35689999999999999999999999874 2334555554
No 6
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.82 E-value=8.1e-09 Score=76.38 Aligned_cols=50 Identities=24% Similarity=0.320 Sum_probs=39.8
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
.|+++.++.+.++++|+|++|+.+|+|+|.|+|.+.++..+-...++|+|
T Consensus 67 ~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~ 116 (116)
T cd05715 67 DRVEWVGNPSRKDASIVIHNLQFTDNGTYTCDVKNPPDIVGKPGEIRLRV 116 (116)
T ss_pred CcEEEecCCcCCeeEEEEeeCCcccCEEEEEEEEeCCCCCCCccEEEEeC
Confidence 78889988888999999999999999999999998865322123455543
No 7
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.78 E-value=1.6e-08 Score=71.26 Aligned_cols=49 Identities=18% Similarity=0.237 Sum_probs=38.0
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEe
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVI 67 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVL 67 (167)
.|+++.++.. ++++|+|++|+.+|+|.|.|+|.+.+.+ .....+.|+||
T Consensus 50 ~R~~~~~~~~-~~~sL~I~~v~~~D~G~Y~C~v~~~~~g-~~~~~~~l~V~ 98 (98)
T cd05718 50 GRVSFLNSSL-EDATISISNLRLEDEGNYICEFATFPQG-NRQKVTTLTVL 98 (98)
T ss_pred ceEEEeCCCC-CceEEEEccCCcccCEEEEEEEEeCCCC-cEEEEEEEEeC
Confidence 6777776533 7899999999999999999999875432 24467788886
No 8
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.77 E-value=1.7e-08 Score=71.56 Aligned_cols=48 Identities=27% Similarity=0.295 Sum_probs=38.0
Q ss_pred CCCCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 15 GFPSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 15 g~~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
..+||++... ..+.++|+|++|+.+|+|.|+|++.+.. +..+.++|+|
T Consensus 48 ~~~r~~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~~~~~~---~~~~~~~~~v 95 (95)
T cd05717 48 RDNRIQLVNF-SANELSISISNVSLSDEGRYTCSLYTMP---VQTAKATVTV 95 (95)
T ss_pred ccCcEEEEcC-CCCeeEEEEccCCcccCEEEEEEEecCC---CceEEEEEEC
Confidence 3479998643 4567999999999999999999999864 2356777776
No 9
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.77 E-value=9.5e-09 Score=71.57 Aligned_cols=40 Identities=28% Similarity=0.371 Sum_probs=35.0
Q ss_pred eeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEecCC
Q psy7729 29 VYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVILPQ 70 (167)
Q Consensus 29 eySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVLVPP 70 (167)
.-+|.|.+|+..|+|.|+|.+.+..+ ..++.+.|+|..||
T Consensus 46 ~~~L~I~~v~~~D~G~Y~C~a~n~~g--~~~~~~~l~V~~pP 85 (85)
T cd04970 46 NGDLMIRNAQLKHAGKYTCTAQTVVD--SLSASADLIVRGPP 85 (85)
T ss_pred cceEEEccCCHHhCeeeEEEEecCCC--cEEEEEEEEEECCC
Confidence 45899999999999999999998764 24579999999998
No 10
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.76 E-value=2e-08 Score=72.80 Aligned_cols=48 Identities=25% Similarity=0.278 Sum_probs=39.2
Q ss_pred CCCCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 15 GFPSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 15 g~~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
..+||++..+ ..+.++|+|++|+.+|+|.|+|++.+.+ +..+.++|+|
T Consensus 48 ~~~r~~~~~~-~~~~~sL~I~~v~~~DsG~Y~C~~~t~~---~~~~~~~l~v 95 (95)
T cd07701 48 RDNRIELVRA-SWHELSISISDVSLSDEGQYTCSLFTMP---VKTSKAYLTV 95 (95)
T ss_pred cCCCEEEEEC-CCCcEEEEECcCCcccCEEEEEEeEeec---CccEEEEEEC
Confidence 4579988543 5678999999999999999999999863 2457888886
No 11
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.76 E-value=1.4e-08 Score=74.25 Aligned_cols=48 Identities=25% Similarity=0.286 Sum_probs=37.8
Q ss_pred CCCCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 15 GFPSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 15 g~~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
.++||.+... ..+.++|+|+||+.+|+|.|+|++.+... -.+.++|+|
T Consensus 48 ~~~r~~~~~~-~~~~~~L~I~nV~~~D~G~YtC~~~t~~~---~~~~~~~~v 95 (95)
T cd05882 48 RDNRIQLVKS-TPTELIISISNVQLSDEGEYTCSIFTMPV---RTAKATVTV 95 (95)
T ss_pred eCCeEEEEeC-CCceEEEEECCCCcccCEEEEEEEEeecc---ccEEEEEEC
Confidence 4578887755 45789999999999999999999999532 235677765
No 12
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.76 E-value=1.6e-08 Score=75.61 Aligned_cols=50 Identities=20% Similarity=0.208 Sum_probs=40.6
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
+|+++.++...++.+|+|++|+++|+|+|.|.|.+.++..+....++|+|
T Consensus 66 ~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~ 115 (115)
T cd05880 66 GRVVWDGNIMRRDASILIWQLQPTDNGTYTCQVKNPPDVHGPIGEIRLRV 115 (115)
T ss_pred CeEEEecCCcCCceEEEEeeCChhhCEEEEEEEEeCCCCCCCccEEEEeC
Confidence 68888888888999999999999999999999999876433234556654
No 13
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.75 E-value=3.8e-08 Score=69.98 Aligned_cols=55 Identities=20% Similarity=0.193 Sum_probs=43.1
Q ss_pred CCeEEeec--CCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEecCCccc
Q psy7729 17 PSYMRVGD--SSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVILPQAIS 73 (167)
Q Consensus 17 ~Rysl~Gn--~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVLVPPSip 73 (167)
.||.+... ......+|+|.++..+|+|.|+|.+.+..+. ..+.+.|+|..||..|
T Consensus 32 ~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~--~~~~~~L~V~~~P~~P 88 (88)
T cd05735 32 SRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGE--DRGIIQLTVQEPPDPP 88 (88)
T ss_pred CcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCc--ceEEEEEEEeCCCCCC
Confidence 57876532 1233468999999999999999999998752 3478999999999865
No 14
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.73 E-value=3.5e-08 Score=70.25 Aligned_cols=48 Identities=25% Similarity=0.348 Sum_probs=36.6
Q ss_pred CCeEEeec-CCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 17 PSYMRVGD-SSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 17 ~Rysl~Gn-~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
+|+++.++ ...+.++|+|++|+.+|+|+|+|.|.+.++ .-.+.++|.|
T Consensus 51 ~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~--~~~~~i~l~v 99 (100)
T cd05713 51 GRTELLKDAIAEGSVALRIHNVRASDEGLYTCFFQSDGF--YEEATVELKV 99 (100)
T ss_pred ceEEeecccccCCcEEEEEEcCChhhCEEEEEEEecCCc--EEEEEEEEEE
Confidence 69888764 457899999999999999999999998643 1124555554
No 15
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.73 E-value=1.7e-08 Score=72.41 Aligned_cols=51 Identities=24% Similarity=0.279 Sum_probs=40.9
Q ss_pred CCCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCC--eeeeEEEEE
Q psy7729 16 FPSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKP--IRANARLTV 66 (167)
Q Consensus 16 ~~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~--iss~a~LtV 66 (167)
.+||++..+.+.+.|+|+|++++.+|+|+|.|++....++.. +...++|.|
T Consensus 56 ~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~~~~~~~~~g~gt~l~V 108 (109)
T cd04983 56 KGRFSATLDKSRKSSSLHISAAQLSDSAVYFCALSESGGTGKLTFGKGTRLTV 108 (109)
T ss_pred CCcEEEEEcccCCEEEEEECCCCHHHCEEEEEEEecCCCCcceEECCCEEEEE
Confidence 379999887778999999999999999999999987642222 335777776
No 16
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.72 E-value=3e-08 Score=73.38 Aligned_cols=49 Identities=14% Similarity=0.179 Sum_probs=41.2
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEe
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVI 67 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVL 67 (167)
+|.++. +++.++.+|+|+||+++|+|.|.|.|.+.+.+ ...+.+.|+|+
T Consensus 51 ~Rv~f~-~~~~~daSi~i~nl~~~D~G~Y~C~v~t~P~g-~~~~~~~L~V~ 99 (99)
T cd05886 51 ERVTFK-NPSFEDGTISLSRLELEDEGVYICEFATFPTG-NRESQLNLTVY 99 (99)
T ss_pred CcEEEc-CCCCCcceEEEcCCccccCEEEEEEEEeCCCC-CeEEEEEEEEC
Confidence 899998 45779999999999999999999999996543 24578899884
No 17
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.70 E-value=2.9e-08 Score=74.03 Aligned_cols=51 Identities=18% Similarity=0.201 Sum_probs=41.8
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCC-eeeeEEEEEe
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKP-IRANARLTVI 67 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~-iss~a~LtVL 67 (167)
+||++.++...++++|+|++++.+|+|+|.|.+........ +...+.|+|+
T Consensus 67 gR~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~~~~~~~~~~~f~~gt~l~v~ 118 (119)
T cd05712 67 GRFRLLGDLGKKNCSLLISDAQPEDSGKYFFRVELGDSNKYNFLKNTLSVVV 118 (119)
T ss_pred ccEEEecCCCCCEEEEEEccCChhhCeEEEEEEEcCCccEEEecCCeEEEEe
Confidence 69999998889999999999999999999999977533211 3367888885
No 18
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=98.69 E-value=5.2e-08 Score=70.79 Aligned_cols=54 Identities=13% Similarity=-0.029 Sum_probs=43.5
Q ss_pred CCCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEecCCccc
Q psy7729 16 FPSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVILPQAIS 73 (167)
Q Consensus 16 ~~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVLVPPSip 73 (167)
..||++... .+...|.|.+++.+|+|.|+|.+.+..+. ..+.++|+|+.+|..|
T Consensus 44 ~~~~~~~~~--~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~--~~~~~~l~V~~~P~pP 97 (98)
T cd05762 44 GEGIKIENT--ENSSKLTITEGQQEHCGCYTLEVENKLGS--RQAQVNLTVVDKPDPP 97 (98)
T ss_pred CCcEEEEec--CCeeEEEECCCChhhCEEEEEEEEcCCCc--eeEEEEEEEecCCCCC
Confidence 346766643 34578999999999999999999998752 3479999999998776
No 19
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.67 E-value=3.2e-08 Score=69.18 Aligned_cols=49 Identities=24% Similarity=0.486 Sum_probs=40.7
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
.|+.+.++...+.++|+|+|++.+|+|.|.|+|..... ..+...+.|+|
T Consensus 66 ~r~~~~~~~~~~~~sL~i~~l~~~DsG~Y~C~v~~~~~-~~~~~~~~L~V 114 (114)
T PF07686_consen 66 GRFTFSGNGSQNNFSLTIKNLQPSDSGTYFCQVSTSNE-QSFGNGTKLTV 114 (114)
T ss_dssp TTEEEEEETTTTEEEEEESSESGGGEEEEEEEEEESSE-EEEEEEEEEEE
T ss_pred eeeeeeecccCCeEEEEECCCCcCcCEEEEEEEEECCC-CEECCcEEEEC
Confidence 79999998888999999999999999999999999721 12335777776
No 20
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.67 E-value=4.2e-08 Score=70.47 Aligned_cols=49 Identities=18% Similarity=0.183 Sum_probs=40.3
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEe
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVI 67 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVL 67 (167)
+|+.+. ..+.+..+|+|+||+++|+|+|.|.+.+.+.+ .++..+.|+|.
T Consensus 49 ~r~~~~-~~~~~~~sL~I~nv~~~D~G~Y~C~~~~~p~g-~~~~~~~L~v~ 97 (97)
T cd05846 49 RRRSIT-SLGLNSTSITIWNVTLEDEGCYKCIFNTFPDG-SKSGTMCLTVY 97 (97)
T ss_pred CeEEEc-CCCCCccEEEEeCCceeeeEEEEEEEEeCCCC-CeeeEEEEEEC
Confidence 677776 45678899999999999999999999987653 25578899984
No 21
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.66 E-value=5.6e-08 Score=71.97 Aligned_cols=49 Identities=14% Similarity=0.134 Sum_probs=41.1
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEe
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVI 67 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVL 67 (167)
+|.++. +++.++.+|+|+||+.+|+|.|.|.|.+.+.+ ...+.+.|+||
T Consensus 48 ~Rv~~~-~~~~~d~sl~i~nv~~~D~G~Y~C~v~tfP~G-~~~~~~~l~~~ 96 (96)
T cd05887 48 GRVSFK-NYSLLDATIMLENVGFSDIGVYICKAVTFPLG-NTQSSTTVTVL 96 (96)
T ss_pred CcEEEc-CCCCCccEEEEeCCCccccEEEEEEEEeCCCC-CeeEEEEEEEC
Confidence 699987 46778999999999999999999999987653 24478888886
No 22
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=98.66 E-value=5.3e-08 Score=68.11 Aligned_cols=47 Identities=23% Similarity=0.197 Sum_probs=38.0
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
.||++..+ ..|..+|+|.+++.+|+|.|+|.+.+..+. ..+.+.|.|
T Consensus 29 ~r~~~~~~-~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~--~~~~a~L~V 75 (75)
T cd05892 29 DRISLYQD-NSGRVTLLIKNVNKKDAGWYTVSAVNEAGV--ATCHARLDV 75 (75)
T ss_pred CeEEEEEc-CCCcEEEEECCCChhhCEEEEEEEEcCcCe--EEEEEEEeC
Confidence 58888765 346679999999999999999999998752 346888876
No 23
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.64 E-value=2.8e-08 Score=70.29 Aligned_cols=50 Identities=26% Similarity=0.345 Sum_probs=38.8
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCC--CCCeeeeEEEEE
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQY--HKPIRANARLTV 66 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~--~~~iss~a~LtV 66 (167)
.|+++..+...+.++|+|++|+.+|+|+|.|++....+ ...+...++|.|
T Consensus 54 ~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~gt~l~v 105 (105)
T cd00099 54 GRFSGTRDSSKSSFTLTISSLQPEDSAVYYCAVSLSGGTYKLYFGQGTRLTV 105 (105)
T ss_pred CcEEEEEeccCCEEEEEECCCCHHHCEEEEEEEecCCCceeeEECCCEEEeC
Confidence 79999887666899999999999999999999998652 111224566654
No 24
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.63 E-value=5.6e-08 Score=70.39 Aligned_cols=46 Identities=17% Similarity=0.293 Sum_probs=35.2
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEe
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVI 67 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVL 67 (167)
.|+.+ ..++++|+|++++.+|+|+|.|+|....+ ..++...+|.|+
T Consensus 52 ~R~~~----~~~~~sL~I~~~~~~DsG~Y~c~v~~~~~-~~~~~~f~L~vy 97 (97)
T cd05775 52 ERVNF----SQNDYSLQISNLKMEDAGSYRAEINTKNG-VTITKEFTLHIY 97 (97)
T ss_pred eeEEe----cCCceeEEECCCchHHCEEEEEEEEcCCC-CeEEEEEEEEeC
Confidence 35555 34579999999999999999999999763 234567777764
No 25
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.54 E-value=1.5e-07 Score=67.78 Aligned_cols=47 Identities=15% Similarity=0.106 Sum_probs=36.1
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
+|+++.+. ..+.++|+|++++.+|+|+|+|+|....+ .....++|.|
T Consensus 56 ~R~~~~~~-~~~~~sL~I~~v~~~DsG~Y~C~v~~~~~--~~~~~~~l~v 102 (106)
T cd05877 56 GRVFLRRA-HDLDASLVITDLRLEDYGRYRCEVIDGLE--DESVVVALRL 102 (106)
T ss_pred CcEEecCC-CCCcEEEEEccCChHHCEEEEEEEEeccc--ceEEEEEEEE
Confidence 68988653 46789999999999999999999977432 1334566665
No 26
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.54 E-value=8e-08 Score=72.80 Aligned_cols=44 Identities=18% Similarity=0.360 Sum_probs=36.6
Q ss_pred eeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEecCCccccc
Q psy7729 30 YNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVILPQAISAS 75 (167)
Q Consensus 30 ySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVLVPPSip~~ 75 (167)
++|+|.+|+..|+|.|+|++.+..+ ...+.++|+|++||.+...
T Consensus 1 asL~i~~v~~~D~G~Y~C~~~~~~~--~~~~~~~l~v~~~P~v~~~ 44 (139)
T cd05771 1 ASLTLPGLTVHDEGTYICSVSTPPH--QAQQIIQLSVSEPPRVRLS 44 (139)
T ss_pred CeEEECCCCHHHCEEEEEEEEccCc--ceeeEEEEEEecCCceEEe
Confidence 4899999999999999999987543 2347889999999988654
No 27
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.53 E-value=1.1e-07 Score=69.90 Aligned_cols=50 Identities=20% Similarity=0.263 Sum_probs=39.5
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCC------CCeeeeEEEEE
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYH------KPIRANARLTV 66 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~------~~iss~a~LtV 66 (167)
+||++.++.+.+.++|+|++++.+|+|+|.|++...... ..+...+.|+|
T Consensus 59 ~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~~~~~~~~~~~~fg~gt~l~v 114 (116)
T cd07706 59 GRYSVNFQKAQKSISLTISALQLEDSAKYFCALSTLGMGSYDTDKLIFGKGTRVTV 114 (116)
T ss_pred CeEEEEEeccCCEEEEEECCCCHHHCEEEEEEEECCCCCcccccCCEECCCeEEEE
Confidence 899998877778999999999999999999999965321 11335667766
No 28
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.52 E-value=2.1e-07 Score=69.20 Aligned_cols=52 Identities=15% Similarity=0.191 Sum_probs=39.6
Q ss_pred CCC-CCeEEeec-CCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEe
Q psy7729 14 PGF-PSYMRVGD-SSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVI 67 (167)
Q Consensus 14 pg~-~Rysl~Gn-~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVL 67 (167)
..| +|+++.++ ...+.++|+|+|++.+|+|+|.|.|..... .-...+.|.|.
T Consensus 54 ~~f~gR~~~~~~~~~~~~asL~I~~l~~sD~G~Y~C~v~~~~~--~~~~~v~l~V~ 107 (110)
T cd05878 54 QEYQGRVSLPNYPENRGDASLEISRLRSSDSGVYRCEVMHGIE--DEQDTVPLEVT 107 (110)
T ss_pred ccccCeEEeccCCCCCCcEEEEECCCChhhCEEEEEEEEeCCC--cceEEEEEEEE
Confidence 345 69999765 367889999999999999999999998632 12256666664
No 29
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.52 E-value=1.4e-07 Score=71.21 Aligned_cols=53 Identities=15% Similarity=0.182 Sum_probs=41.0
Q ss_pred CCCC-CCeEEeecC-CCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEe
Q psy7729 13 IPGF-PSYMRVGDS-SHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVI 67 (167)
Q Consensus 13 lpg~-~Rysl~Gn~-s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVL 67 (167)
.+.| +|++|.++. +.++.+|+|+||+.+|+|+|.|.|..... .-...+.|.|.
T Consensus 53 ~~~y~gRvsl~~~~~~~~~asL~i~nv~~~D~G~Y~C~v~~g~~--~~~~~v~L~V~ 107 (110)
T cd05902 53 AKAFQGRVSLPGYPKNRYNASLVLSRLRYSDSGTYRCEVVLGIN--DEQDTVPLEVT 107 (110)
T ss_pred chhcccEEEeecCCCCCceEEEEECCCCHHHCEEEEEEEEECCc--ccEEEEEEEEE
Confidence 4555 799999854 56899999999999999999999998531 12256677663
No 30
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=98.50 E-value=3.3e-07 Score=63.23 Aligned_cols=47 Identities=23% Similarity=0.188 Sum_probs=37.1
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
.||++..+ ..+.++|.|.+++..|+|.|+|.+.+..+. ..+.+.|.|
T Consensus 29 ~r~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~--~~~~~~l~v 75 (75)
T cd05744 29 DRISLYQD-NCGRICLLIQNANKEDAGWYTVSAVNEAGV--VSCNARLDV 75 (75)
T ss_pred CcEEEEEc-CCCeEEEEECCCCcccCEEEEEEEEcCCCc--EEEEEEEeC
Confidence 57887654 346678999999999999999999998752 446777765
No 31
>smart00406 IGv Immunoglobulin V-Type.
Probab=98.49 E-value=8.6e-08 Score=63.96 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=30.6
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEE
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQV 49 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV 49 (167)
+||++.++...+.++|+|++++.+|+|+|.|+|
T Consensus 49 ~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v 81 (81)
T smart00406 49 GRVTISKDTSKNDVSLTISNLRVEDTGTYYCAV 81 (81)
T ss_pred CcEEEEecCcCCEEEEEEcCCCHHHCEEEEEcC
Confidence 799999887789999999999999999999986
No 32
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.48 E-value=2e-07 Score=64.80 Aligned_cols=44 Identities=18% Similarity=0.079 Sum_probs=32.7
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
+|+++..+ ++|+|++++.+|+|.|+|+|....+ .......+|.|
T Consensus 49 ~R~~~~~~-----~sL~I~~l~~~DsG~Y~c~v~~~~~-~~~~~~~~l~v 92 (92)
T cd05741 49 GRETIYPN-----GSLLIQNLTKEDSGTYTLQIISTNG-VTENAKFFLRV 92 (92)
T ss_pred CeEEEcCC-----ceEEEccCCchhcEEEEEEEEcCCC-cEEEEEEEEEC
Confidence 67776532 7999999999999999999999753 22334555543
No 33
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=98.47 E-value=2.6e-07 Score=63.49 Aligned_cols=48 Identities=27% Similarity=0.387 Sum_probs=37.1
Q ss_pred CCCCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 15 GFPSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 15 g~~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
...||.+.... +.++|+|.+|+..|+|.|+|.+.+..+ ...+.+.|+|
T Consensus 43 ~~~~~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~~~n~~g--~~~~~~~l~V 90 (90)
T PF07679_consen 43 SSQRYQIESDG--GSSSLTIKNVTREDAGTYTCVASNSSG--EATASVNLTV 90 (90)
T ss_dssp SSSSEEEEEET--TEEEEEESSESGGGSEEEEEEEEETTE--EEEEEEEEEE
T ss_pred eeeeeeeeccc--ceeEEccCCCChhhCEEEEEEEEECCC--EEEEEEEEEC
Confidence 35678877653 889999999999999999999999853 1224566655
No 34
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.46 E-value=3.2e-07 Score=66.22 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=35.6
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEe
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVI 67 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVL 67 (167)
.|+.+. ..+.+.++|+|++|+.+|+|+|.|+|..... .....++|.|.
T Consensus 56 ~r~~~~-~~~~~~~sL~I~~v~~sD~G~Y~C~v~~~~~--~~~~~v~L~V~ 103 (106)
T cd05714 56 VRVPLY-PADPGDASLVITDLRLEDSGRYRCEVIDGIE--DEQDTVELEVR 103 (106)
T ss_pred eEEEee-CCCCCcceEEECCCCHHHCEEEEEEEEcCCC--ceEEEEEEEEE
Confidence 455443 3467899999999999999999999987532 23457777764
No 35
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=98.45 E-value=2.8e-07 Score=62.96 Aligned_cols=38 Identities=16% Similarity=0.280 Sum_probs=30.8
Q ss_pred eeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEec
Q psy7729 29 VYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVIL 68 (167)
Q Consensus 29 eySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVLV 68 (167)
..+|+|.+++.+|+|.|+|.+.+..+ ......+++|+|
T Consensus 34 ~~~L~I~~v~~~D~G~YtC~a~N~~g--~~~~~~~~~~~v 71 (71)
T cd04976 34 GHSLTIKDVTEEDAGNYTVVLTNKQA--KLEKRLTFTLVV 71 (71)
T ss_pred CCEEEECcCCHHHCEEEEEEEEcCCc--cEEEEEEEEEEC
Confidence 36899999999999999999999754 244677777765
No 36
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.44 E-value=3.8e-07 Score=68.94 Aligned_cols=39 Identities=13% Similarity=0.193 Sum_probs=32.7
Q ss_pred CCC-CCeEEeec-CCCCeeeEEEeecccCCCCeeEEEEeec
Q psy7729 14 PGF-PSYMRVGD-SSHGVYNLRIRNVSLTDDAEFQCQVGPA 52 (167)
Q Consensus 14 pg~-~Rysl~Gn-~s~GeySLqIsnVqlsDeG~Y~CQV~~~ 52 (167)
..| .|+++... ...++++|+|+|++.+|+|+|+|.|...
T Consensus 56 ~~f~~R~sl~~~~~~~~~asL~I~nl~~sDsG~Y~C~V~~g 96 (112)
T cd05900 56 TEYLDRVSLPNYPAIPSDATLEITELRSNDSGTYRCEVMHG 96 (112)
T ss_pred ccccCeEEecccCCCCCCcEEEEeecccccCEEEEEEEecC
Confidence 345 69999763 3568899999999999999999999964
No 37
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=98.43 E-value=4.7e-07 Score=63.06 Aligned_cols=47 Identities=19% Similarity=0.160 Sum_probs=37.0
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
.||++..+ ..+..+|.|.+|+.+|+|.|+|.+.+..+. ..+.+.|.|
T Consensus 29 ~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~--~~~~a~L~V 75 (75)
T cd05893 29 DRVSMHQD-NCGYICLLIQGATKEDAGWYTVSAKNEAGI--VSCTARLDV 75 (75)
T ss_pred CeEEEEEc-CCCEEEEEECCCCHHHCEEEEEEEEcCCCE--EEEEEEEeC
Confidence 68887654 335568999999999999999999998652 446888876
No 38
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.38 E-value=1e-06 Score=62.03 Aligned_cols=49 Identities=24% Similarity=0.153 Sum_probs=38.5
Q ss_pred CCCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEecCCc
Q psy7729 16 FPSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVILPQA 71 (167)
Q Consensus 16 ~~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVLVPPS 71 (167)
..||++..+ .+|+|.+|+.+|+|.|+|.+.+..+. ..+.++|.|.-+++
T Consensus 38 ~~r~~v~~~-----~~L~I~~v~~~D~G~Y~C~a~N~~G~--~~~~~~l~V~~~~~ 86 (90)
T cd05726 38 SSRFSVSQT-----GDLTITNVQRSDVGYYICQTLNVAGS--ILTKAYLEVTDVIA 86 (90)
T ss_pred CCeEEECCC-----CeEEEeeCChhhCEEEEEEEEcCCCc--eEEEEEEEEeeccc
Confidence 368877532 37999999999999999999998652 45789999986443
No 39
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.38 E-value=8.9e-07 Score=63.38 Aligned_cols=46 Identities=22% Similarity=0.390 Sum_probs=35.9
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
.||.+.+ ..+..+|+|++|+.+|+|.|+|.+.+..+. ..+.++|+|
T Consensus 53 ~r~~v~~--~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~--~~~~~~l~~ 98 (98)
T cd05870 53 GRIEVKG--QHGESSLHIKDVKLSDSGRYDCEAASRIGG--HQKSMYLDI 98 (98)
T ss_pred ceEEEee--cCCeeEEEEeeCCcCCCEEEEEEEeccCCc--ceeEEEEeC
Confidence 5777764 335679999999999999999999998763 335777765
No 40
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.37 E-value=6.3e-07 Score=62.01 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=35.0
Q ss_pred CCCCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 15 GFPSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 15 g~~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
...||.+..+ .+|+|.+|+.+|+|.|+|.+.+..+. ..+.++|+|
T Consensus 29 ~~~r~~~~~~-----g~L~I~~v~~~D~G~Y~C~A~N~~G~--~~~~~~l~~ 73 (73)
T cd05852 29 NNSRISIWDD-----GSLEILNITKLDEGSYTCFAENNRGK--ANSTGVLSV 73 (73)
T ss_pred cCCCEEEcCC-----CEEEECcCChhHCEEEEEEEECCCCc--eeEEEEEEC
Confidence 3468887643 37999999999999999999998652 346777765
No 41
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.37 E-value=8.5e-07 Score=63.05 Aligned_cols=37 Identities=19% Similarity=0.382 Sum_probs=33.9
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecC
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQ 53 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~ 53 (167)
+||++..+...+.++|+|++|+.+|+|+|.|.+....
T Consensus 51 ~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 87 (98)
T cd05716 51 GRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCGVGDDG 87 (98)
T ss_pred CCEEEEecCCCCEEEEEEcCCCHHHCEEEEEEcccCC
Confidence 7999987777899999999999999999999998864
No 42
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=98.35 E-value=8.4e-07 Score=61.47 Aligned_cols=33 Identities=12% Similarity=0.243 Sum_probs=26.7
Q ss_pred CCCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCC
Q psy7729 16 FPSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQY 54 (167)
Q Consensus 16 ~~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~ 54 (167)
..|+.+.++ +|.|.+++..|+|.|+|.+.+..+
T Consensus 37 ~~~~~~~~~------~L~I~~~~~~DsG~Y~C~a~n~~g 69 (79)
T cd04973 37 NNRTRITGE------EVQIKDAVPRDSGLYACVTSSPSG 69 (79)
T ss_pred CceEEEeCC------EEEECCCChhhCEEEEEEEeCCCC
Confidence 357766532 799999999999999999988654
No 43
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.34 E-value=9.7e-07 Score=60.34 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=30.4
Q ss_pred eeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEe
Q psy7729 30 YNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVI 67 (167)
Q Consensus 30 ySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVL 67 (167)
.+|.|.+++.+|+|.|+|.+.+..+ ...+.++|.|+
T Consensus 41 ~~L~I~~~~~~D~G~Y~C~a~N~~G--~~~~~~~l~V~ 76 (76)
T cd05867 41 GALILTDVQPSDTAVYQCEARNRHG--NLLANAHVHVV 76 (76)
T ss_pred CEEEECCCChhhCEEEEEEEECCCC--eEEEEEEEEEC
Confidence 3799999999999999999999765 25578888874
No 44
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.34 E-value=6.9e-07 Score=65.30 Aligned_cols=36 Identities=19% Similarity=0.306 Sum_probs=32.1
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeec
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPA 52 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~ 52 (167)
+||++..+.....++|+|++++.+|+|+|.|++...
T Consensus 64 ~r~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~ 99 (116)
T cd04982 64 NKFEARKDVGKSTSTLTIQNLEKEDSATYYCAYWES 99 (116)
T ss_pred CCEEEEEECCCCEEEEEEEECCHHHCEEEEEEEecC
Confidence 799988775557899999999999999999999865
No 45
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.34 E-value=1.1e-06 Score=67.71 Aligned_cols=51 Identities=16% Similarity=0.231 Sum_probs=39.3
Q ss_pred CCC-CCeEEeecC-CCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 14 PGF-PSYMRVGDS-SHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 14 pg~-~Rysl~Gn~-s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
..| +|.+|..+. ..|+.+|+|++|+.+|+|+|.|.|..... .....+.|.|
T Consensus 61 ~~y~gRv~l~~~~~~~g~asL~i~~v~~sD~G~Y~C~V~~g~~--~~~~~v~L~V 113 (117)
T cd05901 61 QEYMGRVSVPSHPEDQGDASLTIVKLRASDAGVYRCEVMHGIE--DTQDTVSLDV 113 (117)
T ss_pred CcccCcEEeeccCCcCCceEEEEcccccccCEEEEEEEEECCc--ccEEEEEEEE
Confidence 445 799998754 57899999999999999999999988632 1234566665
No 46
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=98.33 E-value=1.2e-06 Score=60.38 Aligned_cols=38 Identities=21% Similarity=0.219 Sum_probs=28.1
Q ss_pred eeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEe
Q psy7729 30 YNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVI 67 (167)
Q Consensus 30 ySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVL 67 (167)
.+|.|.+++.+|+|.|+|.+.+..+....++.++|.|+
T Consensus 38 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~ 75 (77)
T cd05760 38 RTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII 75 (77)
T ss_pred CEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence 48999999999999999999997652111235555553
No 47
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=98.33 E-value=1.7e-06 Score=58.37 Aligned_cols=47 Identities=13% Similarity=0.072 Sum_probs=34.3
Q ss_pred CCCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 16 FPSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 16 ~~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
.+|+.+... .+...|+|.+++.+|+|.|+|.+.+..+. .+..++|+|
T Consensus 28 ~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~--~~~~~~l~V 74 (74)
T cd05748 28 SGRVQIETT--ASSTSLVIKNAERSDSGKYTLTLKNPAGE--KSATINVKV 74 (74)
T ss_pred CCeEEEEEC--CCeEEEEECCCCcCcCEEEEEEEECCCcc--EEEEEEEEC
Confidence 357776643 35678999999999999999999998652 224555544
No 48
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=98.32 E-value=1.9e-06 Score=60.37 Aligned_cols=46 Identities=22% Similarity=0.314 Sum_probs=34.7
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
.||.+.. ..+..+|+|++|+.+|+|.|+|++.+..+. ..+.++|+|
T Consensus 51 ~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~--~~~s~~l~v 96 (96)
T cd05732 51 GRIVVRG--HARVSSLTLKDVQLTDAGRYDCEASNRIGG--DQQSMYLEV 96 (96)
T ss_pred ceEEEeC--CccEEEEEECcCCcCcCEEeEEEEEeCCCC--cEEEEEEeC
Confidence 4666543 345679999999999999999999998763 235666664
No 49
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=98.31 E-value=1.4e-06 Score=61.76 Aligned_cols=38 Identities=34% Similarity=0.441 Sum_probs=32.0
Q ss_pred CeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEe
Q psy7729 28 GVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVI 67 (167)
Q Consensus 28 GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVL 67 (167)
....|+|.+|+..|+|.|+|.+.+..+. ..+.|.|+|+
T Consensus 53 ~~~~L~I~~v~~~D~G~Y~C~A~N~~G~--~~~sa~L~V~ 90 (90)
T cd04974 53 ESEVLYLRNVSFDDAGEYTCLAGNSIGP--SHHSAWLTVL 90 (90)
T ss_pred ccceEEEeccccccCcEEEEEeecccCc--ccCCEEEEeC
Confidence 3468999999999999999999998762 3468899885
No 50
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=98.31 E-value=1.1e-06 Score=61.93 Aligned_cols=37 Identities=32% Similarity=0.467 Sum_probs=31.6
Q ss_pred eeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEe
Q psy7729 29 VYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVI 67 (167)
Q Consensus 29 eySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVL 67 (167)
..+|+|++|+.+|+|.|+|.+.+..+. ..+.++|+||
T Consensus 54 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~--~~~~a~L~V~ 90 (90)
T cd05858 54 MEVLYLRNVTFEDAGEYTCLAGNSIGI--SHHSAWLTVL 90 (90)
T ss_pred eeEEEEccCCHHHCEEEEEEEEeCCCc--ccceEEEEEC
Confidence 368999999999999999999998752 3478899985
No 51
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.31 E-value=1.6e-06 Score=64.08 Aligned_cols=37 Identities=11% Similarity=0.106 Sum_probs=32.5
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCC
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQY 54 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~ 54 (167)
+|+.+.+. +..+.+|+|+||+.+|+|.|+|++.+.+.
T Consensus 48 ~Rv~f~~~-~~~d~sI~i~nvt~~D~G~Y~C~~~t~P~ 84 (96)
T cd05889 48 GRVYFLNS-TREDMSLSFNNATEEDVGLYCCSLVTYPQ 84 (96)
T ss_pred CeEEEecC-CCCccEEEEcCCCcccCEEEEEEEEeCCC
Confidence 79998864 44789999999999999999999999864
No 52
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.31 E-value=1.7e-06 Score=58.71 Aligned_cols=45 Identities=24% Similarity=0.293 Sum_probs=34.7
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEe
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVI 67 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVL 67 (167)
.|+.+... ...|+|++++.+|+|.|+|.+.+..+ ...+.++|+||
T Consensus 31 ~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~A~N~~G--~~~~~~~l~V~ 75 (75)
T cd05763 31 RRMHVMPE----DDVFFIVDVKIEDTGVYSCTAQNTAG--SISANATLTVL 75 (75)
T ss_pred cceEEecC----CCEEEEeeCCcccCEEEEEEEEcCCC--EEEeeEEEEEC
Confidence 46665422 23899999999999999999998765 24578899885
No 53
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.28 E-value=1.4e-06 Score=58.22 Aligned_cols=43 Identities=30% Similarity=0.390 Sum_probs=32.8
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
+|+.+.. ..+|+|++|+.+|+|.|+|.+.+..+. ..+.+.|+|
T Consensus 27 ~~~~~~~-----~~~L~I~~v~~~D~G~Y~C~a~N~~G~--~~~~~~l~V 69 (69)
T cd05725 27 GRAEILD-----DKSLKIRNVTAGDEGSYTCEAENMVGK--IEASASLTV 69 (69)
T ss_pred CcEEEee-----CCEEEECcCChhHCEEEEEEEEcCCCc--EEEEEEEEC
Confidence 4666652 348999999999999999999997652 345666665
No 54
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=98.28 E-value=2.8e-06 Score=60.65 Aligned_cols=48 Identities=19% Similarity=0.234 Sum_probs=34.6
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
+|+.+..+ ..+..+|+|.+|+.+|+|.|+|.+.+..+. ...+.+.|.|
T Consensus 45 ~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~-~~~~sv~l~~ 92 (92)
T cd04977 45 QQISVVQN-DDVRSTLTIYNANIEDAGIYKCVATDAKGT-ESEATVNLKI 92 (92)
T ss_pred CCEEEEeC-CCCEEEEEEecCCcccCEEEEEEEEcCCCC-cceeEEEEEC
Confidence 56665543 456789999999999999999999997432 1234555554
No 55
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=98.28 E-value=3.3e-06 Score=61.58 Aligned_cols=49 Identities=16% Similarity=0.234 Sum_probs=35.3
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEe
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVI 67 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVL 67 (167)
.||.+..+ ....++|+|.+|+.+|+|.|+|.+.+..++ ...+.+.|.|+
T Consensus 48 ~r~~v~~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g-~~~~s~~l~v~ 96 (96)
T cd05865 48 QRISVVRN-DDYSSTLTIYNANIDDAGIYKCVVSNEDEG-ESEATVNVKIF 96 (96)
T ss_pred CeEEEEeC-CCCceEEEEeccChhhCEEEEEEEEcCCCC-cEEEEEEEEEC
Confidence 46766533 334579999999999999999999998532 13356666663
No 56
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.27 E-value=1.2e-06 Score=62.62 Aligned_cols=47 Identities=21% Similarity=0.311 Sum_probs=35.7
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
+||++..+ .+.++|+|++++.+|+|+|.|.+..... ..+...+.|+|
T Consensus 52 ~rf~~~~~--~~~~~L~I~~~~~~Dsg~Y~C~~~~~~~-~~fg~gT~L~V 98 (98)
T cd04984 52 DRFSGSKS--GNTASLTISGAQTEDEADYYCQVWDSNS-YVFGGGTKLTV 98 (98)
T ss_pred CCEEEEcc--CCEEEEEECCCChhhCEEEEEEEccCCC-CEECCCEEEeC
Confidence 68887643 4789999999999999999999986421 12335777765
No 57
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.27 E-value=1.1e-06 Score=63.99 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=36.6
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCC--eeeeEEEEE
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKP--IRANARLTV 66 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~--iss~a~LtV 66 (167)
+||.+..+ +.+.++|+|++++.+|+|+|.|++....+... +...+.|+|
T Consensus 60 ~r~~~~~~-~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~~~~~~~~fg~gT~L~V 110 (110)
T cd05899 60 DRFSASRP-SLTRSSLTIKSAEPEDSAVYLCASSLGGGADEAYFGPGTRLTV 110 (110)
T ss_pred CceEEECc-CCCccEEEECCCChhhCEEEEEEeeCCCCccceEECCCEEEeC
Confidence 68888765 33789999999999999999999987532112 225667665
No 58
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.27 E-value=2e-06 Score=59.07 Aligned_cols=46 Identities=20% Similarity=0.138 Sum_probs=35.3
Q ss_pred CCCCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 15 GFPSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 15 g~~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
..+|+++..+ .+|.|++++.+|+|.|+|.+.+..+. ..+..+.|+|
T Consensus 34 ~~~r~~~~~~-----~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~s~~~~l~~ 79 (79)
T cd05734 34 LAGRIQLLSN-----GSLLIKHVLEEDSGYYLCKVSNDVGA-DASKSMVLTV 79 (79)
T ss_pred cCCCEEEecC-----CeEEECcCCcccCEEEEEEEEeCCCC-CCceEEEEeC
Confidence 3467776532 58999999999999999999998653 3456777775
No 59
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=98.26 E-value=1.6e-06 Score=59.22 Aligned_cols=44 Identities=20% Similarity=0.251 Sum_probs=34.1
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
.||.+..+ .+|.|.+++.+|+|.|+|.+.+..+. .++..+.|.|
T Consensus 30 ~~~~~~~~-----g~L~i~~~~~~D~G~Y~C~a~N~~G~-~~s~~a~l~v 73 (74)
T cd05738 30 GRIKQLRS-----GALQIENSEESDQGKYECVATNSAGT-RYSAPANLYV 73 (74)
T ss_pred CCEEEcCC-----cEEEECCCChhhCEEEEEEEECCCCc-eEcccEEEEE
Confidence 57776532 36999999999999999999987652 3456778876
No 60
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.26 E-value=1.9e-06 Score=58.61 Aligned_cols=35 Identities=37% Similarity=0.484 Sum_probs=29.1
Q ss_pred eeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 30 YNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 30 ySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
.+|+|.+|+.+|+|.|+|.+.+..+. .++.++|+|
T Consensus 40 ~~L~I~~v~~~D~G~Y~C~A~N~~G~--~~~~~~L~V 74 (74)
T cd05745 40 GTLRISRVALHDQGQYECQAVNIVGS--QRTVAQLTV 74 (74)
T ss_pred CeEEEeeCCHHhCEEEEEEEEeCCCc--eeEEEEEeC
Confidence 38999999999999999999998652 446777765
No 61
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.25 E-value=1.2e-06 Score=64.06 Aligned_cols=49 Identities=18% Similarity=0.252 Sum_probs=38.1
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
+||++....+...++|+|++++.+|+|+|.|....... ..+...+.|+|
T Consensus 59 ~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~~~~-~~Fg~gT~L~V 107 (107)
T cd07700 59 EKFSIRVTSDSSRYRLHINRVKPEDSGTYFCMTVGSPE-LTFGTGTQLSV 107 (107)
T ss_pred CcEEEEEECCCCEEEEEECCCCHHHCEEEEEeEcCCCC-CEECcCEEEeC
Confidence 68988766667789999999999999999999875421 12446777776
No 62
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=98.25 E-value=2.8e-06 Score=58.70 Aligned_cols=39 Identities=13% Similarity=0.215 Sum_probs=32.1
Q ss_pred CeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEec
Q psy7729 28 GVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVIL 68 (167)
Q Consensus 28 GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVLV 68 (167)
...+|+|.+++.+|+|.|+|.+.+..+ ...+..+|+|+|
T Consensus 29 ~~~~L~i~~v~~~D~G~YtC~a~N~~g--~~~~~~~~~l~v 67 (67)
T cd05863 29 SQHSLQIKDVTEASAGTYTLVLWNSAA--GLEKRISLELIV 67 (67)
T ss_pred CcCEEEECCCCHHHCEEEEEEEEECCc--cEEEEEEEEEEC
Confidence 446999999999999999999998765 245677888775
No 63
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.24 E-value=2.4e-06 Score=61.59 Aligned_cols=45 Identities=18% Similarity=0.296 Sum_probs=33.0
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEec
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVIL 68 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVLV 68 (167)
.|+++.. .+|.|++++.+|+|.|+|.+.....+. ....++|+|+-
T Consensus 46 ~r~~~~~------~~L~I~~~~~~DsG~Y~C~a~~~~~~~-~~~~~~l~v~~ 90 (91)
T cd05871 46 ERLIHTE------RGLLLRSLQRSDAGVYTCTAVEHSFSQ-TLAKYTLHVIE 90 (91)
T ss_pred ccEEEec------CeEEEeeCChhHCEEEEEEEEccCCeE-EEEEEEEEEec
Confidence 4665542 369999999999999999998654221 23588888863
No 64
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=98.24 E-value=3.7e-06 Score=59.57 Aligned_cols=46 Identities=11% Similarity=0.010 Sum_probs=34.0
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
.||++... .+..+|+|++++.+|+|.|+|.+.+..+. .++.++|.|
T Consensus 41 ~r~~~~~~--~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~--~~~~~~l~V 86 (86)
T cd05894 41 GRVRVESY--KDLSSFVIEGAEREDEGVYTITVTNPVGE--DHASLFVKV 86 (86)
T ss_pred CeEEEEEc--CCeEEEEECCCccCcCEEEEEEEEeCCCc--EEEEEEEEC
Confidence 47777643 34679999999999999999999998652 224555543
No 65
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=98.22 E-value=3.5e-06 Score=59.35 Aligned_cols=40 Identities=13% Similarity=0.223 Sum_probs=30.1
Q ss_pred CeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEe
Q psy7729 28 GVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVI 67 (167)
Q Consensus 28 GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVL 67 (167)
...+|+|.+++.+|+|.|.|.+.+...+....+.+.|+|+
T Consensus 44 ~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i~V~ 83 (84)
T cd05861 44 LRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNITVH 83 (84)
T ss_pred EEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEEEEe
Confidence 4679999999999999999999876432223356666664
No 66
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=98.21 E-value=3.2e-06 Score=59.60 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=31.3
Q ss_pred eeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEec
Q psy7729 30 YNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVIL 68 (167)
Q Consensus 30 ySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVLV 68 (167)
..|+|.+++.+|.|.|+|.+.+..+. ..+.++|+|++
T Consensus 58 ~~L~I~~v~~~D~G~Y~C~a~N~~G~--~~~~~~L~V~~ 94 (95)
T cd05730 58 SEMTILDVDKLDEAEYTCIAENKAGE--QEAEIHLKVFA 94 (95)
T ss_pred CEEEECCCChhhCEEEEEEEEcCCCe--EEEEEEEEEEe
Confidence 47999999999999999999998652 34688888875
No 67
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=98.21 E-value=4.7e-06 Score=61.59 Aligned_cols=53 Identities=23% Similarity=0.197 Sum_probs=38.9
Q ss_pred CCeEEeecC--CCCeeeEEEeecc-cCCCCeeEEEEeecCCCCCeeeeEEEEEecCCc
Q psy7729 17 PSYMRVGDS--SHGVYNLRIRNVS-LTDDAEFQCQVGPAQYHKPIRANARLTVILPQA 71 (167)
Q Consensus 17 ~Rysl~Gn~--s~GeySLqIsnVq-lsDeG~Y~CQV~~~~~~~~iss~a~LtVLVPPS 71 (167)
+||++.... .....+|+|++++ .+|.|.|+|.+.+..+. ..+.++|.|..+|.
T Consensus 54 ~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~--~~~~i~L~~~~~p~ 109 (109)
T cd05773 54 PRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGE--DSLDIQLVSTSRPD 109 (109)
T ss_pred CeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCcc--CcEEEEEEecCCCC
Confidence 477654221 2224689999998 59999999999998753 34788999988884
No 68
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.20 E-value=3.8e-06 Score=61.03 Aligned_cols=48 Identities=19% Similarity=0.190 Sum_probs=35.3
Q ss_pred CCCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 16 FPSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 16 ~~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
..||++.. ..+.++|+|++|+.+|+|.|+|.+.+..+. ...+.+.|.|
T Consensus 44 ~~r~~~~~--~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~~i~l~~ 91 (92)
T cd05866 44 SQRVVVQK--EGVRSRLTIYNANIEDAGIYRCQATDAKGQ-TQEATVVLEI 91 (92)
T ss_pred CCCEEEEe--CCCeeEEEEecCChHHCEEEEEEEEcCCCc-EEEEEEEEEE
Confidence 36887763 344679999999999999999999998642 1224556655
No 69
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.19 E-value=2.6e-06 Score=57.17 Aligned_cols=37 Identities=30% Similarity=0.326 Sum_probs=31.1
Q ss_pred eeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEe
Q psy7729 29 VYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVI 67 (167)
Q Consensus 29 eySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVL 67 (167)
..+|.|.+|+..|+|.|+|.+.+..+ ...+.++|+|+
T Consensus 40 ~~~L~i~~v~~~D~G~Y~C~A~N~~G--~~~~~~~l~V~ 76 (76)
T cd04978 40 GGTLILSNVQPNDTAVYQCNASNVHG--YLLANAFVHVV 76 (76)
T ss_pred CCEEEECCCChhhCEEEEEEEEccCC--eEEEeEEEEEC
Confidence 35899999999999999999999765 24578888885
No 70
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=98.19 E-value=3.4e-06 Score=57.73 Aligned_cols=36 Identities=28% Similarity=0.337 Sum_probs=28.4
Q ss_pred eeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 30 YNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 30 ySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
.+|+|.+++.+|+|.|+|.+.+..+. ..+..+.|+|
T Consensus 51 ~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~s~~~~l~V 86 (86)
T cd05724 51 GNLLIAEARKSDEGTYKCVATNMVGE-RESAAARLSV 86 (86)
T ss_pred CEEEEeECCcccCEEEEEEEEeccCc-eeeeeEEEEC
Confidence 48999999999999999999997642 2335666665
No 71
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.19 E-value=1.2e-06 Score=64.39 Aligned_cols=38 Identities=18% Similarity=0.353 Sum_probs=31.6
Q ss_pred CCCeEEeecC-CCCeeeEEEeecccCCCCeeEEEEeecC
Q psy7729 16 FPSYMRVGDS-SHGVYNLRIRNVSLTDDAEFQCQVGPAQ 53 (167)
Q Consensus 16 ~~Rysl~Gn~-s~GeySLqIsnVqlsDeG~Y~CQV~~~~ 53 (167)
.+||.+.++. ..|.|+|+|++++.+|+|+|+|.|.+..
T Consensus 50 ~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C~v~~~~ 88 (94)
T cd07690 50 NDRADSRRNLWDQGSFPLIIKNLKIEDSDTYICEVEDKK 88 (94)
T ss_pred CCCCceecccCCCCeEEEEECCCCHHHCEEEEEEECCcc
Confidence 4777776632 4678999999999999999999998863
No 72
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=98.17 E-value=3.1e-06 Score=58.19 Aligned_cols=39 Identities=21% Similarity=0.304 Sum_probs=31.1
Q ss_pred CCCCCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCC
Q psy7729 14 PGFPSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQY 54 (167)
Q Consensus 14 pg~~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~ 54 (167)
+..+||++.. ..+..+|+|++++.+|+|.|+|.+.+..+
T Consensus 28 ~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G 66 (78)
T cd05743 28 PDSARVSITS--EGGYGTLTIRDVKESDQGAYTCEAINTRG 66 (78)
T ss_pred CCCCCEEEEE--CCCEEEEEECCCChHHCEEEEEEEEecCC
Confidence 3446777654 33567999999999999999999998764
No 73
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=98.17 E-value=5.5e-06 Score=56.30 Aligned_cols=28 Identities=29% Similarity=0.487 Sum_probs=24.9
Q ss_pred CCeeeEEEeecccCCCCeeEEEEeecCC
Q psy7729 27 HGVYNLRIRNVSLTDDAEFQCQVGPAQY 54 (167)
Q Consensus 27 ~GeySLqIsnVqlsDeG~Y~CQV~~~~~ 54 (167)
....+|.|.+++.+|+|.|+|.+.+..+
T Consensus 41 ~~~~~L~I~~~~~~DsG~Y~C~a~N~~g 68 (76)
T cd05895 41 KKSSELQISKASLADNGEYKCMVSSKLG 68 (76)
T ss_pred CcEEEEEECcCCcccCEEEEEEEEeCCC
Confidence 4557899999999999999999999864
No 74
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=98.17 E-value=6.4e-06 Score=58.30 Aligned_cols=37 Identities=19% Similarity=0.126 Sum_probs=29.1
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCC
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQY 54 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~ 54 (167)
.||++... ..+..+|.|.+++.+|+|.|+|.+.+..+
T Consensus 46 ~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G 82 (92)
T cd05737 46 DHYNVKVE-QGKYASLTIKGVSSEDSGKYGIVVKNKYG 82 (92)
T ss_pred CCEEEEEc-CCCEEEEEEccCChhhCEEEEEEEEECCC
Confidence 56666533 22457899999999999999999999765
No 75
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=98.16 E-value=2.9e-06 Score=58.88 Aligned_cols=38 Identities=16% Similarity=0.387 Sum_probs=30.0
Q ss_pred CCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 27 HGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 27 ~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
....+|+|.+|+.+|+|.|.|.+.+..+. ..+.+.|+|
T Consensus 46 ~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~--~~~s~~v~v 83 (84)
T cd05742 46 ELSSTLTIPNATLKDSGTYTCAASSGTMD--QKESTKVNI 83 (84)
T ss_pred EEEEEEEECCCChhhCEEEEEEEccCCCc--eEEEEEEEE
Confidence 45679999999999999999999997642 345666655
No 76
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=98.16 E-value=6.3e-06 Score=60.80 Aligned_cols=38 Identities=11% Similarity=0.135 Sum_probs=30.8
Q ss_pred eeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEec
Q psy7729 29 VYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVIL 68 (167)
Q Consensus 29 eySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVLV 68 (167)
..+|+|.+|..+|+|.|+|.+.+..+. ....+.|+|.|
T Consensus 64 ~~~L~i~~v~~~D~G~Ytc~A~N~~G~--~~~t~~L~V~v 101 (101)
T cd04975 64 VSELKLVRLKESEAGTYTFLASNSDAS--KSLTFELYVNV 101 (101)
T ss_pred EEEEEEeecCHhhCeeEEEEEECCCcc--EEEEEEEEEEC
Confidence 468999999999999999999998652 33577777764
No 77
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.16 E-value=3.8e-06 Score=58.87 Aligned_cols=36 Identities=31% Similarity=0.421 Sum_probs=28.0
Q ss_pred eEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEe
Q psy7729 31 NLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVI 67 (167)
Q Consensus 31 SLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVL 67 (167)
+|.|.+++.+|+|.|+|.+.+.... ...+..+|+|+
T Consensus 52 ~L~I~~~~~~D~G~Y~C~a~~~~~~-~~~~~~~l~V~ 87 (89)
T cd04979 52 GLLIRSVSPADAGVYTCQSVEHGFK-QTLATYSLNVL 87 (89)
T ss_pred CEEEccCCHHHCEEEEEEEecCccc-eeEeEEEEEEe
Confidence 6999999999999999999876431 13356677765
No 78
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.15 E-value=2.4e-06 Score=61.81 Aligned_cols=47 Identities=21% Similarity=0.282 Sum_probs=35.3
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
+||++.. +.+.++|+|++++++|+|+|.|++..... ..+...+.|+|
T Consensus 60 ~r~~~~~--~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~~~-~~fg~gT~L~v 106 (106)
T cd04980 60 SRFSGSG--SGTDFTLTISRVEPEDAAVYYCQQYGTFP-YTFGGGTKLEI 106 (106)
T ss_pred CCEEEec--cCCEEEEEECCCChHHCEEEEEEEeCCCC-CEECCCEEEeC
Confidence 6888753 45789999999999999999999976421 12345667764
No 79
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.14 E-value=5.5e-06 Score=58.69 Aligned_cols=35 Identities=23% Similarity=0.387 Sum_probs=29.2
Q ss_pred eeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 30 YNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 30 ySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
..|+|++|+..|+|.|+|.+.+..+. ..+.+.|.|
T Consensus 53 ~~L~I~~v~~~D~G~Y~C~A~N~~G~--~~~~~~l~V 87 (88)
T cd05851 53 AVLKIFNIQPEDEGTYECEAENIKGK--DKHQARVYV 87 (88)
T ss_pred CEEEECcCChhhCEEEEEEEEcCCCc--eEEEEEEEE
Confidence 48999999999999999999998652 345777776
No 80
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.13 E-value=4e-06 Score=57.76 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=30.6
Q ss_pred eEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEe
Q psy7729 31 NLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVI 67 (167)
Q Consensus 31 SLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVL 67 (167)
.|.|++++.+|+|.|+|.+.+..+ ...+.+.|.||
T Consensus 42 ~l~i~~v~~~D~G~Y~C~A~N~~G--~~~~~~~l~v~ 76 (76)
T cd05868 42 TIIFSKVQERSSAVYQCNASNEYG--YLLANAFVNVL 76 (76)
T ss_pred EEEECCCCHhhCEEEEEEEEcCCC--EEEEEEEEEeC
Confidence 799999999999999999999865 24578999886
No 81
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.13 E-value=3.8e-06 Score=58.90 Aligned_cols=36 Identities=31% Similarity=0.500 Sum_probs=27.1
Q ss_pred eeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEe
Q psy7729 30 YNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVI 67 (167)
Q Consensus 30 ySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVL 67 (167)
++|+|.+|+.+|+|.|+|.+.+... .......++++
T Consensus 36 ~~L~I~~v~~~D~G~YtC~a~~~~~--~~~~~~~i~~~ 71 (72)
T cd07702 36 YSLVIKDVTEEDAGIYTILLGIKQY--NLFKNLTITLI 71 (72)
T ss_pred CEEEECcCCHHHCEEEEEEEEcccc--ceEeeEEEEEE
Confidence 4899999999999999999999743 23444444443
No 82
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=98.12 E-value=9e-06 Score=58.02 Aligned_cols=47 Identities=17% Similarity=0.164 Sum_probs=33.9
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEec
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVIL 68 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVLV 68 (167)
.||.+... ..+..+|.|.+++.+|+|.|+|.+.+..+. ..++|+|.|
T Consensus 46 ~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~----~~~~~~v~~ 92 (92)
T cd05891 46 EHYSVKLE-QGKYASLTIKGVTSEDSGKYSINVKNKYGG----ETVDVTVSV 92 (92)
T ss_pred CCEEEEEc-CCCEEEEEECCCChhhCEEEEEEEEeCCCc----eeeEEEEEC
Confidence 56665433 223468999999999999999999997652 456666543
No 83
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.10 E-value=5.2e-06 Score=56.14 Aligned_cols=44 Identities=20% Similarity=0.218 Sum_probs=32.9
Q ss_pred CCCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 16 FPSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 16 ~~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
..|+.+..+ .+|.|.+|+..|+|.|+|.+.+..+. ..+.+.|+|
T Consensus 30 ~~~~~~~~~-----~~L~i~~v~~~D~G~Y~C~a~N~~G~--~~~~~~l~V 73 (73)
T cd04969 30 SSRICIWPD-----GSLEILNVTKSDEGKYTCFAENFFGK--ANSTGSLSV 73 (73)
T ss_pred CCCEEECCC-----CeEEEccCChhHCEEEEEEEECCCCc--eEEEEEEEC
Confidence 356666532 37999999999999999999998652 335666665
No 84
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.08 E-value=4.6e-06 Score=56.47 Aligned_cols=36 Identities=28% Similarity=0.337 Sum_probs=29.3
Q ss_pred eeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 29 VYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 29 eySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
..+|.|.+++.+|+|.|+|.+.+..+. .++.++|+|
T Consensus 46 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~--~~~~~~l~v 81 (81)
T cd05765 46 IGQLVIYNAQPQDAGLYTCTARNSGGL--LRANFPLSV 81 (81)
T ss_pred ccEEEEccCCcccCEEEEEEEecCCce--EEEEEEEeC
Confidence 368999999999999999999998652 345667765
No 85
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=98.08 E-value=8.9e-06 Score=58.07 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=33.1
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
+|+.+..+ ....+|.|++|+.+|+|.|+|.+.+..+. ..+.++|.|
T Consensus 52 ~~~~v~~~--~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~--~~~~~~l~v 97 (97)
T cd05869 52 GHIVVRSH--ARVSSLTLKYIQYTDAGEYLCTASNTIGQ--DSQSMYLEV 97 (97)
T ss_pred ccEEEEcC--ccEEEEEEecCccCcCEEEEEEEecCCCC--eeEEEEEEC
Confidence 45554432 23458999999999999999999998652 235666665
No 86
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=98.08 E-value=4.3e-06 Score=61.45 Aligned_cols=38 Identities=11% Similarity=0.080 Sum_probs=30.7
Q ss_pred eeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEec
Q psy7729 29 VYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVIL 68 (167)
Q Consensus 29 eySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVLV 68 (167)
..+|+|.+++.+|+|.|+|.+.+..+. ....+.|.|.|
T Consensus 64 ~s~L~I~~v~~~D~G~Ytc~A~N~~g~--~~~t~~l~V~v 101 (101)
T cd05859 64 VSKLKLIRAKEEDSGLYTALAQNEDAV--KSYTFALQIQV 101 (101)
T ss_pred ccEEEEeeCCHHHCEEEEEEEEcCCce--EEEEEEEEEEC
Confidence 358999999999999999999998642 23577787764
No 87
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=98.08 E-value=6.4e-06 Score=58.22 Aligned_cols=37 Identities=5% Similarity=0.017 Sum_probs=29.1
Q ss_pred CCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEe
Q psy7729 27 HGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVI 67 (167)
Q Consensus 27 ~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVL 67 (167)
....+|+|.+++..|+|.|+|.+.+..+. ...+|+|.
T Consensus 43 ~~~~~L~I~~~~~~D~G~YtC~A~N~~G~----~~~~~~~~ 79 (81)
T cd04971 43 EYHGCLQFDNPTHVNNGNYTLVASNEYGQ----DSKSISAH 79 (81)
T ss_pred ccEEEEEECCCCcccCeEEEEEEEeCCCC----eeeEEEee
Confidence 34568999999999999999999998652 45555554
No 88
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.07 E-value=1e-05 Score=54.78 Aligned_cols=43 Identities=21% Similarity=0.356 Sum_probs=32.6
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
.||++..+ .+|.|.+++.+|+|.|+|.+.+..+. ..+.++|.|
T Consensus 29 ~~~~~~~~-----~~l~i~~v~~~D~G~Y~C~A~N~~G~--~~~~~~L~V 71 (71)
T cd05723 29 DYFKIVKE-----HNLQVLGLVKSDEGFYQCIAENDVGN--VQASAQLII 71 (71)
T ss_pred CCEEEEec-----CCEEEEcCCcccCEEEEEEEEcCCCE--EEEEEEEEC
Confidence 46666543 36999999999999999999998652 345677765
No 89
>PHA03376 BARF1; Provisional
Probab=98.07 E-value=8.3e-06 Score=69.00 Aligned_cols=36 Identities=8% Similarity=0.258 Sum_probs=32.0
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCC
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQY 54 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~ 54 (167)
+|+.|+++. |+++|.|+++++||+|+|.|.++....
T Consensus 76 GrtD~~~~~--gnvsLvI~~l~lSDdGtY~C~fQkge~ 111 (221)
T PHA03376 76 GFFDIHRSA--NTFFLVVTAANISHDGNYLCRMKLGET 111 (221)
T ss_pred cEEEEEecC--CeEEEEEEeeeecCCceEEEEEEcCCC
Confidence 788888753 999999999999999999999998653
No 90
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=98.06 E-value=1.3e-05 Score=54.28 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=32.6
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
.||++.++ ...|+|++++..|+|.|+|.+.+..+. ....+.|.|
T Consensus 30 ~~~~~~~~----~~~l~I~~~~~~D~G~Y~C~a~N~~G~--~~~~~~l~V 73 (76)
T cd05736 30 KQLTLIAN----GSELHISNVRYEDTGAYTCIAKNEAGV--DEDISSLFV 73 (76)
T ss_pred ccEEEeCC----CCEEEECcCCcccCEEEEEEEEcCCCC--cceEEEEEE
Confidence 36666543 247999999999999999999997652 225666766
No 91
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.06 E-value=1.1e-05 Score=60.46 Aligned_cols=32 Identities=19% Similarity=0.084 Sum_probs=28.4
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecC
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQ 53 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~ 53 (167)
+|..+..| .+|+|++|+.+|+|.|+|+|.+..
T Consensus 62 gR~~~~~n-----gSL~I~~v~~~D~G~Y~~~v~~~~ 93 (105)
T cd05774 62 GRETIYPN-----GSLLIQNVTQKDTGFYTLQTITTN 93 (105)
T ss_pred CcEEEeCC-----CcEEEecCCcccCEEEEEEEEeCC
Confidence 78888764 399999999999999999999975
No 92
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=98.04 E-value=1.3e-05 Score=54.91 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=29.9
Q ss_pred CeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 28 GVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 28 GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
+.++|.|.+++.+|+|.|+|.+.+..+. ..+.++|+|
T Consensus 49 ~~~~l~i~~~~~~D~G~Y~C~a~N~~G~--~~~~~~l~v 85 (85)
T cd05857 49 QHWSLIMESVVPSDKGNYTCVVENEYGS--INHTYHLDV 85 (85)
T ss_pred CceEEEEccCCcccCEEEEEEEEeCCCE--EEEEEEEEC
Confidence 4678999999999999999999998652 335666665
No 93
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.03 E-value=7.5e-06 Score=55.08 Aligned_cols=41 Identities=17% Similarity=0.249 Sum_probs=30.3
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEE
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARL 64 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~L 64 (167)
.||.+..+ -+|.|.+++.+|+|.|+|.+.+..+. ..+.++|
T Consensus 28 ~~~~~~~~-----~~L~I~~~~~~D~G~Y~C~a~N~~G~--~~~~~~L 68 (69)
T cd05746 28 GKFHISPE-----GYLAIRDVGVADQGRYECVARNTIGY--ASVSMVL 68 (69)
T ss_pred CCEEECCC-----CEEEECcCChhhCEEEEEEEECCCCc--EEEEEEe
Confidence 46665432 37999999999999999999998652 2345554
No 94
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.02 E-value=8.4e-06 Score=56.83 Aligned_cols=37 Identities=19% Similarity=0.345 Sum_probs=30.5
Q ss_pred eeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEe
Q psy7729 29 VYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVI 67 (167)
Q Consensus 29 eySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVL 67 (167)
..+|+|.+|+.+|+|.|+|.+.+..+. ..+.++|+|+
T Consensus 52 ~~~L~i~~v~~~D~G~Y~C~a~N~~G~--~~~~~~l~V~ 88 (88)
T cd04968 52 GAVLKIPNIQFEDEGTYECEAENIKGK--DTHQGRIYVQ 88 (88)
T ss_pred CCEEEECCCCcccCEEEEEEEEECCCc--EEEEEEEEEC
Confidence 468999999999999999999998652 3467888774
No 95
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.02 E-value=2.7e-05 Score=50.17 Aligned_cols=47 Identities=21% Similarity=0.265 Sum_probs=34.0
Q ss_pred CCCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 16 FPSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 16 ~~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
..|+.+..... ..+|+|.+++..|+|.|.|.+....+ ...+.+.|.|
T Consensus 39 ~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~v~~~~~--~~~~~~~l~V 85 (86)
T smart00410 39 SGRFSVSRSGS--NSTLTISNVTPEDSGTYTCAATNSSG--SASSTTTLTV 85 (86)
T ss_pred CCcEEEEEcCC--eeEEEEEeeccccCeEEEEEEEcCCC--eEEEEEEEEE
Confidence 36777765432 78999999999999999999996532 2223466655
No 96
>smart00409 IG Immunoglobulin.
Probab=98.02 E-value=2.7e-05 Score=50.17 Aligned_cols=47 Identities=21% Similarity=0.265 Sum_probs=34.0
Q ss_pred CCCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 16 FPSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 16 ~~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
..|+.+..... ..+|+|.+++..|+|.|.|.+....+ ...+.+.|.|
T Consensus 39 ~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~v~~~~~--~~~~~~~l~V 85 (86)
T smart00409 39 SGRFSVSRSGS--NSTLTISNVTPEDSGTYTCAATNSSG--SASSTTTLTV 85 (86)
T ss_pred CCcEEEEEcCC--eeEEEEEeeccccCeEEEEEEEcCCC--eEEEEEEEEE
Confidence 36777765432 78999999999999999999996532 2223466655
No 97
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.00 E-value=1.3e-05 Score=58.11 Aligned_cols=35 Identities=26% Similarity=0.399 Sum_probs=28.3
Q ss_pred eeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 30 YNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 30 ySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
.+|.|.+++.+|+|.|+|.+.+..+. ..+.+.|+|
T Consensus 60 ~~L~I~~~~~~DsG~Y~C~~~N~~g~--~~~~~~L~v 94 (94)
T cd05756 60 DLLWFLPAALEDSGLYTCVVRNSTYC--MKVSISLTV 94 (94)
T ss_pred CeEEEccCCcccCeEEEEEEcCCCcc--EEEEEEEEC
Confidence 58999999999999999999997542 345666665
No 98
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.00 E-value=1.2e-05 Score=56.25 Aligned_cols=34 Identities=38% Similarity=0.566 Sum_probs=28.0
Q ss_pred eEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 31 NLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 31 SLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
+|+|++++.+|+|.|+|.+.+..+. ..+.+.|+|
T Consensus 52 ~L~i~~~~~~D~G~Y~C~a~N~~G~--~~~~~~l~V 85 (85)
T cd05728 52 DLRITKLSLSDSGMYQCVAENKHGT--IYASAELAV 85 (85)
T ss_pred EEEEeeCCHHHCEEEEEEEECCCCe--EEEEEEEEC
Confidence 7999999999999999999998652 345666665
No 99
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=97.97 E-value=1e-05 Score=54.78 Aligned_cols=36 Identities=28% Similarity=0.401 Sum_probs=28.8
Q ss_pred eeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 29 VYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 29 eySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
..+|+|++++.+|+|.|+|.+.+..+. ..+.+.|+|
T Consensus 35 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~--~~~~~~l~V 70 (71)
T cd05876 35 NKTLQLDNVLESDDGEYVCTAENSEGS--ARHHYTVTV 70 (71)
T ss_pred CCEEEEcccCHHhCEEEEEEEEcCCCe--EEEEEEEEE
Confidence 459999999999999999999998652 335666655
No 100
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=97.97 E-value=1.4e-05 Score=57.47 Aligned_cols=36 Identities=22% Similarity=0.323 Sum_probs=29.5
Q ss_pred eeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 30 YNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 30 ySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
.+|+|.+|+.+|+|.|+|.+.+..+. ..+..+.|+|
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~S~~~~L~V 90 (91)
T cd05740 55 RTLTFNNVTRSDTGHYQCEASNEVSN-MTSDPYILNV 90 (91)
T ss_pred CEEEECcCChhhCEEEEEEEEcCCCC-EEeeeEEEEe
Confidence 48999999999999999999998652 2335777877
No 101
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=97.97 E-value=1.1e-05 Score=54.31 Aligned_cols=27 Identities=19% Similarity=0.460 Sum_probs=24.3
Q ss_pred CeeeEEEeecccCCCCeeEEEEeecCC
Q psy7729 28 GVYNLRIRNVSLTDDAEFQCQVGPAQY 54 (167)
Q Consensus 28 GeySLqIsnVqlsDeG~Y~CQV~~~~~ 54 (167)
+.++|+|.+++.+|+|.|+|.+.+..+
T Consensus 46 ~~~~L~i~~v~~~D~G~Y~C~a~N~~G 72 (82)
T cd05856 46 KKWTLSLKNLKPEDSGKYTCHVSNRAG 72 (82)
T ss_pred ceEEEEEccCChhhCEEEEEEEEcCCc
Confidence 457999999999999999999999764
No 102
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.97 E-value=9.1e-06 Score=60.84 Aligned_cols=50 Identities=18% Similarity=0.236 Sum_probs=38.3
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecC---C-CCCeeeeEEEEE
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQ---Y-HKPIRANARLTV 66 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~---~-~~~iss~a~LtV 66 (167)
+||++..+.....++|+|++++.+|+|+|.|.+.... . ...+...+.|+|
T Consensus 63 ~rf~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~~~~~~~~~~FG~GT~L~V 116 (117)
T cd04981 63 GRFTITRDTSKSTVYLQLNSLTPEDTAVYYCARGLGGYGYGYFDYWGQGTLVTV 116 (117)
T ss_pred CcEEEEEEccCCEEEEEECCCCHHHCEEEEEEEEcCCCCCccEeeECCCEEEEE
Confidence 6999887766677899999999999999999997642 1 112336777777
No 103
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=97.93 E-value=1.2e-05 Score=55.55 Aligned_cols=37 Identities=11% Similarity=0.191 Sum_probs=29.1
Q ss_pred eeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEec
Q psy7729 30 YNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVIL 68 (167)
Q Consensus 30 ySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVLV 68 (167)
.+|+|.+++.+|+|.|+|.+.+..+. ....++++|+|
T Consensus 34 ~~L~I~~v~~~D~G~YtC~a~N~~G~--~~~~~t~~l~v 70 (70)
T cd05864 34 VHLTIYEVTEKDAGNYTVVLTNPITK--EEQRHTFQLVV 70 (70)
T ss_pred CEEEECcCCHHHCEEEEEEEEECCCc--eeeEEEEEEEC
Confidence 58999999999999999999998652 23456666654
No 104
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=97.90 E-value=1.4e-05 Score=52.72 Aligned_cols=36 Identities=33% Similarity=0.463 Sum_probs=28.5
Q ss_pred eeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 29 VYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 29 eySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
..+|+|.+|+..|+|.|+|.+.+..+. ....++|+|
T Consensus 35 ~~~L~i~~v~~~D~G~Y~C~a~N~~G~--~~~~~~l~V 70 (71)
T cd05731 35 NKTLKIDNVSEEDDGEYRCTASNSLGS--ARHTISVTV 70 (71)
T ss_pred CCEEEECCCCHHHCEEEEEEEEeCCce--EEEEEEEEE
Confidence 358999999999999999999997642 335666665
No 105
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=97.89 E-value=2.8e-05 Score=54.64 Aligned_cols=37 Identities=19% Similarity=0.418 Sum_probs=30.2
Q ss_pred CeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 28 GVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 28 GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
...+|+|++++..|.|.|+|.+.+..+. ..+.++|+|
T Consensus 54 ~~~~L~I~~v~~~D~g~Y~C~A~N~~G~--~~~~~~L~v 90 (90)
T cd04972 54 DIYNLQLSNITSETQTTVTCTAENPVGQ--ANVSVQVTV 90 (90)
T ss_pred CEEEEEEecCCcccCEEEEEEEECCCCc--eeEEEEEeC
Confidence 4579999999999999999999998652 345777765
No 106
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.89 E-value=2.9e-05 Score=52.17 Aligned_cols=35 Identities=23% Similarity=0.306 Sum_probs=27.6
Q ss_pred eeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 30 YNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 30 ySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
.+|+|.+++..|+|.|.|.+.+..+. ..+.++|+|
T Consensus 40 ~~L~i~~~~~~D~G~Y~C~a~N~~G~--~~~~~~l~v 74 (74)
T cd05764 40 GTLDILITTVKDTGSFTCIASNAAGE--ATATVELHI 74 (74)
T ss_pred CEEEEEECChhhCEEEEEEEECCCCe--EEEEEEEEC
Confidence 37999999999999999999998652 234556654
No 107
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=97.88 E-value=2.2e-05 Score=57.09 Aligned_cols=37 Identities=24% Similarity=0.250 Sum_probs=28.1
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCee
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIR 59 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~is 59 (167)
.||.+.. .+|.|+||+.+|+|.|+|.+.......+++
T Consensus 41 ~r~~~~~------~~L~I~nv~~~DsG~Y~C~a~e~~~~~~~~ 77 (87)
T cd05873 41 AKYLLYR------DGLLIFNASEADAGRYQCLSVEKSKAKLFT 77 (87)
T ss_pred ceEEEEC------CcEEEeCCCHHHCEEEEEEEEecccCceeE
Confidence 4676543 269999999999999999998875333355
No 108
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=97.88 E-value=1.9e-05 Score=56.11 Aligned_cols=39 Identities=23% Similarity=0.331 Sum_probs=30.7
Q ss_pred CCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEe
Q psy7729 27 HGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVI 67 (167)
Q Consensus 27 ~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVL 67 (167)
.....|+|.+++.+|+|.|+|.+.+..+ ...+.+.|.|+
T Consensus 47 ~~~s~L~I~~~~~~DsG~Y~C~a~n~~~--~~~~~t~~~V~ 85 (86)
T cd05862 47 ELSSTLTIENVTLSDLGRYTCTASSGQM--IAKNSTIVIVH 85 (86)
T ss_pred eeeeEEEEecCCcccCEEEEEEEeecce--EecccEEEEEe
Confidence 3467999999999999999999988643 13367777774
No 109
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=97.87 E-value=4.3e-05 Score=53.91 Aligned_cols=37 Identities=11% Similarity=0.117 Sum_probs=29.8
Q ss_pred CCCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCC
Q psy7729 16 FPSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQY 54 (167)
Q Consensus 16 ~~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~ 54 (167)
..||.+... ....+|.|.+++.+|+|.|+|.+.+..+
T Consensus 47 ~~~~~~~~~--~~~~~L~i~~~~~~D~G~Y~C~a~N~~G 83 (92)
T cd05747 47 SQRHQITST--EYKSTFEISKVQMSDEGNYTVVVENSEG 83 (92)
T ss_pred CCcEEEEEc--CCeeEEEECCCCcccCEeEEEEEEcCCC
Confidence 357776643 3457999999999999999999999765
No 110
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=97.83 E-value=3.6e-05 Score=56.97 Aligned_cols=38 Identities=26% Similarity=0.404 Sum_probs=28.6
Q ss_pred eeEEEeecccCCCCeeEEEEeecCCCCC--eeeeEEEEEe
Q psy7729 30 YNLRIRNVSLTDDAEFQCQVGPAQYHKP--IRANARLTVI 67 (167)
Q Consensus 30 ySLqIsnVqlsDeG~Y~CQV~~~~~~~~--iss~a~LtVL 67 (167)
..|.|.+|+.+|+|.|+|++..+.++.. ++....|+|+
T Consensus 55 ~~L~I~~v~~~D~G~YtC~~~~~~~g~~y~vtr~~~l~v~ 94 (95)
T cd05897 55 TYLHIIDVSLNDSGYYTCKLQFTHEGKKYNITRIIKLRIV 94 (95)
T ss_pred CEEEEEEcChhhCEEEEEEEEEeeCCEEEEEEEEEEEEEc
Confidence 3699999999999999999999865322 2345566653
No 111
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=97.83 E-value=5.4e-05 Score=57.64 Aligned_cols=30 Identities=17% Similarity=0.369 Sum_probs=25.7
Q ss_pred CeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecC
Q psy7729 18 SYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQ 53 (167)
Q Consensus 18 Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~ 53 (167)
|++..+. .|+|.++.++|+|.|+|++.++.
T Consensus 64 Ri~~~~~------~Lwf~Pa~~eDSG~Y~C~~rN~t 93 (104)
T cd05896 64 RMSKEED------SIWFRPAELQDSGLYTCVLRNST 93 (104)
T ss_pred eEEEeCC------EEEEEeCChhhCeEEEEEECCCC
Confidence 6665554 99999999999999999999873
No 112
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=97.82 E-value=3.9e-05 Score=54.27 Aligned_cols=35 Identities=31% Similarity=0.393 Sum_probs=26.7
Q ss_pred eEEEeec-----ccCCCCeeEEEEeec-CCCCCeeeeEEEEE
Q psy7729 31 NLRIRNV-----SLTDDAEFQCQVGPA-QYHKPIRANARLTV 66 (167)
Q Consensus 31 SLqIsnV-----qlsDeG~Y~CQV~~~-~~~~~iss~a~LtV 66 (167)
+|.|.++ +..|+|.|+|.+.+. .+ ...+..++|+|
T Consensus 55 ~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G-~~~s~~~~l~v 95 (95)
T cd05722 55 SLLITSVVHSKHNKPDEGFYQCVAQNDSLG-SIVSRTARLTV 95 (95)
T ss_pred eEEEeeeeccCCCCCcCEEEEEEEECCccC-cEEEeeeEEeC
Confidence 5788887 588999999999998 54 22345777776
No 113
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=97.80 E-value=3.4e-05 Score=56.02 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=24.3
Q ss_pred CeeeEEEeecccCCCCeeEEEEeecCCC
Q psy7729 28 GVYNLRIRNVSLTDDAEFQCQVGPAQYH 55 (167)
Q Consensus 28 GeySLqIsnVqlsDeG~Y~CQV~~~~~~ 55 (167)
+..+|.|.+|+.+|+|.|+|.+.+..++
T Consensus 50 ~~~~L~I~~v~~~DsG~YtC~~~n~~~~ 77 (92)
T cd05757 50 KGSKLLIQNVTEEDAGNYTCKLTFTHNG 77 (92)
T ss_pred cCCEEEEeeCChhhCEEEEEEEEecCCC
Confidence 3469999999999999999999987653
No 114
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.80 E-value=1.7e-05 Score=58.05 Aligned_cols=34 Identities=15% Similarity=0.357 Sum_probs=28.7
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeec
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPA 52 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~ 52 (167)
.||++.. ..+.++|+|++++.+|+|+|.|++...
T Consensus 58 ~rf~~~~--~~~~~~L~I~~~~~sDsgtY~Ca~~~~ 91 (104)
T cd05720 58 KRFSGSR--SSNSFVLTLKNFQKENEGYYFCSVASN 91 (104)
T ss_pred ceEEEEe--cCCEEEEEECCCCHHHCEEEEEEEccC
Confidence 6888744 347899999999999999999999854
No 115
>KOG4221|consensus
Probab=97.78 E-value=2.8e-05 Score=78.76 Aligned_cols=63 Identities=22% Similarity=0.341 Sum_probs=49.3
Q ss_pred CCccccCCCCCCCCCCCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEecCCcccccc
Q psy7729 2 AYRSAYGFNSIIPGFPSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVILPQAISASE 76 (167)
Q Consensus 2 kdG~~LG~~~~lpg~~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVLVPPSip~~~ 76 (167)
+||..|..+. -||+++|- -+|.|++++..|+|.|+|.+.+..+ .+.+.+.|+|++||.++..+
T Consensus 273 rng~~i~~ds-----~rivl~g~-----~slliS~a~~~dSg~YtC~Atn~~D--~idasaev~V~a~P~~~~~p 335 (1381)
T KOG4221|consen 273 RNGEKISVDS-----YRIVLVGG-----SSLLISNATDDDSGKYTCRATNTND--SIDASAEVTVLAPPGFTKAP 335 (1381)
T ss_pred eCCeeeeecc-----eEEEEecc-----cceEEeccccccCceEEEEecCCCc--ccccceEEEEEcCCCCCCCC
Confidence 4555554443 37777753 4999999999999999999999643 46689999999999988754
No 116
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=97.78 E-value=9.9e-05 Score=49.57 Aligned_cols=37 Identities=16% Similarity=0.299 Sum_probs=28.0
Q ss_pred CCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEE
Q psy7729 27 HGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLT 65 (167)
Q Consensus 27 ~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~Lt 65 (167)
...+.|+|.+++..|+|.|.|.+.+..+. ..+.++|.
T Consensus 48 ~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~--~~~~~~l~ 84 (85)
T cd05729 48 KKKWTLILESVVPSDSGKYTCIVENKYGS--INHTYKVD 84 (85)
T ss_pred CcEEEEEEeECCcccCEEEEEEEEECCce--EEEEEEEe
Confidence 34578999999999999999999987541 23455554
No 117
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=97.77 E-value=5.9e-05 Score=52.02 Aligned_cols=32 Identities=19% Similarity=0.269 Sum_probs=24.4
Q ss_pred eecccCCCCeeEEEEeecCCCCCeeeeEEEEEe
Q psy7729 35 RNVSLTDDAEFQCQVGPAQYHKPIRANARLTVI 67 (167)
Q Consensus 35 snVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVL 67 (167)
.+++.+|+|.|+|.+.+..+. ..++.+.|+|+
T Consensus 69 ~~~~~~D~G~Y~C~a~N~~G~-~~s~~~~l~v~ 100 (100)
T cd07693 69 GRKGRSDEGVYVCVAHNSLGE-AVSRNASLEVA 100 (100)
T ss_pred cCCCcCcCEEEEEEEEccccc-eecceEEEEeC
Confidence 345789999999999998652 24468888873
No 118
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=97.65 E-value=0.00016 Score=48.10 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=24.9
Q ss_pred CCeeeEEEeecccCCCCeeEEEEeecCC
Q psy7729 27 HGVYNLRIRNVSLTDDAEFQCQVGPAQY 54 (167)
Q Consensus 27 ~GeySLqIsnVqlsDeG~Y~CQV~~~~~ 54 (167)
....+|+|.+++..|+|.|+|.+.+..+
T Consensus 40 ~~~~~L~I~~~~~~D~G~Y~C~a~N~~G 67 (75)
T cd05750 40 KKNSELQINKAKLADSGEYTCVVENILG 67 (75)
T ss_pred CceEEEEEccCCcccCeEEEEEEEEcCC
Confidence 3567999999999999999999999865
No 119
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=97.65 E-value=0.00011 Score=52.48 Aligned_cols=27 Identities=7% Similarity=-0.081 Sum_probs=24.4
Q ss_pred CeeeEEEeecccCCCCeeEEEEeecCC
Q psy7729 28 GVYNLRIRNVSLTDDAEFQCQVGPAQY 54 (167)
Q Consensus 28 GeySLqIsnVqlsDeG~Y~CQV~~~~~ 54 (167)
...+|+|++++.+|+|.|+|.+.+..+
T Consensus 42 ~~~~L~i~~~~~~D~G~YtC~A~N~~G 68 (79)
T cd05855 42 YHGCLQLDNPTHLNNGIYTLVAKNEYG 68 (79)
T ss_pred eEEEEEECCCCcccCEEEEEEEEcCCc
Confidence 456899999999999999999999875
No 120
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=97.65 E-value=4e-05 Score=54.05 Aligned_cols=39 Identities=26% Similarity=0.393 Sum_probs=29.9
Q ss_pred CCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 27 HGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 27 ~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
...++|.|.+++.+|+|.|+|.+.+..+ ...+..++|+|
T Consensus 45 ~~~~~l~I~~~~~~dsG~Y~C~~~~~~~-~~~s~~~~i~~ 83 (83)
T cd05753 45 HSNSNLSIPQATLSDSGSYHCSGIIGSY-DYSSEPVSITV 83 (83)
T ss_pred CCCceEEECccCHHHCEEEEEEEEeCCc-eecCCCEEEEC
Confidence 3467899999999999999999999864 12334666665
No 121
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=97.61 E-value=0.00014 Score=52.01 Aligned_cols=33 Identities=27% Similarity=0.296 Sum_probs=24.7
Q ss_pred eEEEeecc-cCCCCeeEEEEeecCCCCCeeeeEEE
Q psy7729 31 NLRIRNVS-LTDDAEFQCQVGPAQYHKPIRANARL 64 (167)
Q Consensus 31 SLqIsnVq-lsDeG~Y~CQV~~~~~~~~iss~a~L 64 (167)
+|.|.++. ..|+|.|+|.+.+..+. ..+..++|
T Consensus 59 ~L~I~~~~~~~D~G~Y~C~A~N~~G~-~~s~~a~l 92 (94)
T cd05850 59 NLVINNPQKARDAGSYQCLAINRCGT-VVSREANL 92 (94)
T ss_pred eEEEccCCccCcCEEEEEEEEcCcCc-EEEEEEEE
Confidence 79999876 59999999999998652 22335555
No 122
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=97.60 E-value=7.9e-05 Score=62.46 Aligned_cols=39 Identities=26% Similarity=0.265 Sum_probs=30.6
Q ss_pred eeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEecC
Q psy7729 29 VYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVILP 69 (167)
Q Consensus 29 eySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVLVP 69 (167)
..+|+|.+|+.+|+|.|+|+|.+..+ .....+.|+|.-+
T Consensus 97 ~~~L~I~~v~~~DsG~Y~C~a~N~~~--~~~~~i~L~V~~~ 135 (227)
T PHA02826 97 SENLWIGNVINIDEGIYICTISSGNI--CEESTIRLTFDSG 135 (227)
T ss_pred CCeEEECCCChHHCEEEEEEEEECCc--ceEEEEEEEEecC
Confidence 47999999999999999999999653 2345677777543
No 123
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=97.59 E-value=4.7e-05 Score=49.40 Aligned_cols=19 Identities=37% Similarity=0.672 Sum_probs=18.0
Q ss_pred eEEEeecccCCCCeeEEEE
Q psy7729 31 NLRIRNVSLTDDAEFQCQV 49 (167)
Q Consensus 31 SLqIsnVqlsDeG~Y~CQV 49 (167)
.|.|++|+..|+|.|+|+|
T Consensus 46 ~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 46 RLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp EEEESSCTGGGTEEEEEEE
T ss_pred EEEEccCCHHHCEEEEEEC
Confidence 4999999999999999987
No 124
>KOG3513|consensus
Probab=97.57 E-value=0.00014 Score=73.08 Aligned_cols=52 Identities=29% Similarity=0.357 Sum_probs=42.1
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEecC-Ccccccc
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVILP-QAISASE 76 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVLVP-PSip~~~ 76 (167)
+|+.+..+ .|+|++|+.+|+|.|+|.+.+.-+ .+.++|.|.|+.+ |.++.-.
T Consensus 379 ~~~~i~~g------~L~is~v~~~dsg~YQC~A~Nk~G--~i~anA~L~V~a~~P~f~~~p 431 (1051)
T KOG3513|consen 379 PRYKIDDG------TLIISNVQESDSGVYQCIAENKYG--TIYANAELKVLASAPVFPLNP 431 (1051)
T ss_pred cceEEeCC------EEEEEecccccCeEEEeeeecccc--eEeeeeEEEEEccCCCCCCCc
Confidence 56777754 899999999999999999999754 2558999999974 7766544
No 125
>KOG3513|consensus
Probab=97.57 E-value=0.00011 Score=73.70 Aligned_cols=60 Identities=17% Similarity=0.149 Sum_probs=47.7
Q ss_pred CCCCCCCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEecCCcccccccc
Q psy7729 12 IIPGFPSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVILPQAISASETL 78 (167)
Q Consensus 12 ~lpg~~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVLVPPSip~~~~~ 78 (167)
.+....||.+.-| .+|.|+|++.+|+|.|+|.+.+..+. ..+.++|.|.-+|.+...+..
T Consensus 466 ~~~~~~r~~i~ed-----GtL~I~n~t~~DaG~YtC~A~N~~G~--a~~~~~L~Vkd~tri~~~P~~ 525 (1051)
T KOG3513|consen 466 KLLQSGRIRILED-----GTLEISNVTRSDAGKYTCVAENKLGK--AESTGNLIVKDATRITLAPSN 525 (1051)
T ss_pred ccccCceEEECCC-----CcEEecccCcccCcEEEEEEEcccCc--cceEEEEEEecCceEEeccch
Confidence 3556689998855 49999999999999999999998652 336889999888877765433
No 126
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=97.54 E-value=0.00014 Score=52.19 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.3
Q ss_pred eEEEeecc-cCCCCeeEEEEeecCC
Q psy7729 31 NLRIRNVS-LTDDAEFQCQVGPAQY 54 (167)
Q Consensus 31 SLqIsnVq-lsDeG~Y~CQV~~~~~ 54 (167)
+|.|.++. ..|+|.|+|.+.+..+
T Consensus 59 ~L~i~~~~~~~D~G~Y~C~A~N~~G 83 (94)
T cd05848 59 NLIISNPSEVKDSGRYQCLATNSIG 83 (94)
T ss_pred eEEEccCCccCcCEEEEEEEEcCCC
Confidence 79999985 6999999999999865
No 127
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=97.51 E-value=0.00019 Score=49.37 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=25.4
Q ss_pred CCeEEeecCCCCeeeEEEeeccc----CCCCeeEEEEeecCC
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSL----TDDAEFQCQVGPAQY 54 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVql----sDeG~Y~CQV~~~~~ 54 (167)
+|+.+.. ...+|.|.+++. .|+|.|+|.+.+..+
T Consensus 30 ~~~~~~~----~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G 67 (77)
T cd05733 30 PRVTMKP----DSGTLVIDNMNGGRAEDYEGEYQCYASNELG 67 (77)
T ss_pred CCEEEeC----CCCEEEEeccCCCCCcCCCEEEEEEEEcCCC
Confidence 4665543 235888888864 799999999999865
No 128
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=97.47 E-value=0.00018 Score=50.58 Aligned_cols=44 Identities=23% Similarity=0.342 Sum_probs=31.4
Q ss_pred CeEEeecCC---CCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 18 SYMRVGDSS---HGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 18 Rysl~Gn~s---~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
++.+..|.. ....+|+|.++ ..|+|.|+|++.+.. .+..++|+|
T Consensus 32 ~~~W~kng~~l~~~~~~l~i~~~-~~dsG~Y~C~a~~~~----~S~~v~l~V 78 (78)
T cd05752 32 STQWYHNGKLLETTTNSYRIRAA-NNDSGEYRCQTQGSS----LSDPVHLEV 78 (78)
T ss_pred cEEEEECCEEeeccCCeEEEeec-ccCCEEeEEECCCCc----CCCCEEEeC
Confidence 455555431 34458999999 999999999998753 334677765
No 129
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=97.47 E-value=0.00022 Score=51.35 Aligned_cols=34 Identities=26% Similarity=0.313 Sum_probs=26.4
Q ss_pred eEEEeecc-cCCCCeeEEEEeecCCCCCeeeeEEEE
Q psy7729 31 NLRIRNVS-LTDDAEFQCQVGPAQYHKPIRANARLT 65 (167)
Q Consensus 31 SLqIsnVq-lsDeG~Y~CQV~~~~~~~~iss~a~Lt 65 (167)
+|.|+++. ..|+|.|+|.+.+..+. ..++.++|+
T Consensus 58 ~L~I~~~~~~~D~G~Y~C~A~N~~G~-~~s~~a~l~ 92 (93)
T cd05849 58 NLVINNPDKYKDAGRYVCIVSNIYGK-VRSREATLS 92 (93)
T ss_pred EEEECcCCcCCCCEEEEEEEEeCcce-EEEccEEEe
Confidence 89999986 68999999999998652 233466664
No 130
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=97.46 E-value=0.00014 Score=44.77 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=22.4
Q ss_pred CeeeEEEeecccCCCCeeEEEEeec
Q psy7729 28 GVYNLRIRNVSLTDDAEFQCQVGPA 52 (167)
Q Consensus 28 GeySLqIsnVqlsDeG~Y~CQV~~~ 52 (167)
...+|+|.+++..|+|.|+|++.+.
T Consensus 37 ~~~~L~i~~~~~~d~G~Y~C~~~n~ 61 (63)
T smart00408 37 SGSTLTIKSVSLEDSGEYTCVAENS 61 (63)
T ss_pred CCcEEEEeeCCcccCEEEEEEEecC
Confidence 4568999999999999999999775
No 131
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.45 E-value=0.00034 Score=58.44 Aligned_cols=57 Identities=18% Similarity=0.198 Sum_probs=43.2
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEecCCcccc
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVILPQAISA 74 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVLVPPSip~ 74 (167)
+|+.+.. .+....+|+|.+|+.+|+|.|.|.+.+-+.+...+..+.|+|..+-.+..
T Consensus 73 ~Rve~mS-~s~~~StItIknVt~sDeGcY~C~F~tfp~G~~~~gt~CLtVt~~~~~~~ 129 (189)
T PHA02987 73 NKIEYLS-KSFNESTILIKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLNVTTDSYTTT 129 (189)
T ss_pred CeEEEec-cCCCcceEEEEeCChhhCeEEEEEEEecCCCCCceeEEEEEEEchhhccc
Confidence 6888543 24456899999999999999999999986532345688999977655444
No 132
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=97.40 E-value=0.00015 Score=50.10 Aligned_cols=34 Identities=32% Similarity=0.323 Sum_probs=26.8
Q ss_pred eeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEE
Q psy7729 29 VYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARL 64 (167)
Q Consensus 29 eySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~L 64 (167)
..+|.|.+|+.+|+|.|+|.+.+..+. ..+.++|
T Consensus 51 ~~~L~I~~v~~~DsG~Y~C~a~n~~g~--~~~~~~l 84 (85)
T cd05754 51 NGILTIRNVQLSDAGTYVCTGSNMLDT--DEATATL 84 (85)
T ss_pred CCEEEECCCCHHHCEEEEEEEeccCCe--EeEEEEE
Confidence 458999999999999999999887642 2345554
No 133
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=97.39 E-value=0.00044 Score=49.36 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=29.3
Q ss_pred CCeEEeecCC--CCeeeEEEeecccCC-CCeeEEEEeecCC
Q psy7729 17 PSYMRVGDSS--HGVYNLRIRNVSLTD-DAEFQCQVGPAQY 54 (167)
Q Consensus 17 ~Rysl~Gn~s--~GeySLqIsnVqlsD-eG~Y~CQV~~~~~ 54 (167)
+||++..+.. ....+|+|++|+.+| .|.|.|.+.+..+
T Consensus 49 ~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G 89 (98)
T cd05758 49 GRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFG 89 (98)
T ss_pred CCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCC
Confidence 5888875422 223589999999966 8999999999865
No 134
>PHA02785 IL-beta-binding protein; Provisional
Probab=97.30 E-value=0.00043 Score=60.21 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=28.7
Q ss_pred eeEEEeecccCCCCeeEEEEeecCCCCCe--eeeEEEEEe
Q psy7729 30 YNLRIRNVSLTDDAEFQCQVGPAQYHKPI--RANARLTVI 67 (167)
Q Consensus 30 ySLqIsnVqlsDeG~Y~CQV~~~~~~~~i--ss~a~LtVL 67 (167)
..|+|.+|+.+|+|.|+|.+.+..++..+ +..+.|.|.
T Consensus 177 ~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~ 216 (326)
T PHA02785 177 GIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVR 216 (326)
T ss_pred CeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEe
Confidence 38999999999999999999987543211 235567775
No 135
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=97.29 E-value=0.00037 Score=58.49 Aligned_cols=47 Identities=11% Similarity=0.160 Sum_probs=32.1
Q ss_pred CCCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCee--eeEEEEE
Q psy7729 16 FPSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIR--ANARLTV 66 (167)
Q Consensus 16 ~~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~is--s~a~LtV 66 (167)
..|+.+.. +..+|.|++|+.+|+|.|+|.+....++..+. ....|+|
T Consensus 178 ~~r~~~~~----~~~~L~I~~V~~~DsG~YtC~a~~~~~g~~y~~t~~~~~~~ 226 (227)
T PHA02826 178 TDRIQLRN----NNSTLVIKSATHDDSGIYTCNLRFNKNSNNYNITKEYKVTI 226 (227)
T ss_pred CCCEEEeC----CCCEEEECcCCHHhCEEEEEEEEEeECCEEEEEEEEEEEEE
Confidence 34655442 23489999999999999999999864332233 3555554
No 136
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=97.22 E-value=0.00049 Score=51.22 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=23.4
Q ss_pred eeeEEEeecccCCCCeeEEEEeecCC
Q psy7729 29 VYNLRIRNVSLTDDAEFQCQVGPAQY 54 (167)
Q Consensus 29 eySLqIsnVqlsDeG~Y~CQV~~~~~ 54 (167)
+.+|.|++|+.+|+|.|+|.+.+...
T Consensus 59 ~G~L~fs~v~~~D~g~Y~C~A~n~~~ 84 (96)
T cd05727 59 NGNLYIAKVEASDRGNYSCFVSSPSS 84 (96)
T ss_pred CCcEEEeecCHhhCceeEEEEEeccc
Confidence 45999999999999999999999753
No 137
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=97.21 E-value=0.00088 Score=48.71 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=20.0
Q ss_pred eEEEeecccCCCCeeEEEEeec
Q psy7729 31 NLRIRNVSLTDDAEFQCQVGPA 52 (167)
Q Consensus 31 SLqIsnVqlsDeG~Y~CQV~~~ 52 (167)
.|.|.+++.+|+|.|+|...-.
T Consensus 48 GLlI~~~~~~dsG~Y~C~s~E~ 69 (85)
T cd05872 48 GLLILVTSPEHSGTYRCYSEEE 69 (85)
T ss_pred CCEEEECCHhhCEEEEEEEecC
Confidence 5889999999999999998765
No 138
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=97.19 E-value=0.00073 Score=46.03 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=23.8
Q ss_pred eeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEE
Q psy7729 30 YNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARL 64 (167)
Q Consensus 30 ySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~L 64 (167)
..|+|.+++ |+|.|+|.+.+..+. ..+.++|
T Consensus 38 ~~L~i~~~~--d~G~Y~C~A~N~~G~--~~~~a~l 68 (69)
T cd05739 38 NVLELTNIY--ESANYTCVAISSLGM--IEATAQV 68 (69)
T ss_pred cEEEEeccc--cCeeEEEEEEeCCCE--EEEEEEE
Confidence 479999974 899999999998652 3355555
No 139
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=97.17 E-value=0.00083 Score=52.06 Aligned_cols=38 Identities=11% Similarity=0.246 Sum_probs=35.0
Q ss_pred CCCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecC
Q psy7729 16 FPSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQ 53 (167)
Q Consensus 16 ~~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~ 53 (167)
..||++.++.+.+..+|+|++++.+|.+.|.|.+...-
T Consensus 60 ~~r~tcs~~~s~ntv~L~l~~L~a~DTa~Y~Ca~e~my 97 (115)
T cd05721 60 LDGFNCDGTLGNEQVNFTLQNLRANQTDIYFCKIELMY 97 (115)
T ss_pred CCCeEEeEeCCCCEEEEEEcCCCHHHCeEEEEEeeecc
Confidence 48999999999999999999999999999999887764
No 140
>PHA02633 hypothetical protein; Provisional
Probab=97.16 E-value=0.00079 Score=47.51 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=28.5
Q ss_pred CeeeEEEeecccCCCCeeEEEEeecCCCCCee--eeEEEEEec
Q psy7729 28 GVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIR--ANARLTVIL 68 (167)
Q Consensus 28 GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~is--s~a~LtVLV 68 (167)
...+|+|.++..+|+|+|.|.+.+.. +. ..+.|+|.-
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t----~c~~~si~l~V~~ 54 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNET----YSDMMKFDLCICL 54 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCC----eeEEEEEEEEEee
Confidence 44699999999999999999998752 44 355566543
No 141
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=97.11 E-value=0.00097 Score=47.39 Aligned_cols=25 Identities=8% Similarity=0.211 Sum_probs=22.4
Q ss_pred CeeeEEEeecccCCCCeeEEEEeec
Q psy7729 28 GVYNLRIRNVSLTDDAEFQCQVGPA 52 (167)
Q Consensus 28 GeySLqIsnVqlsDeG~Y~CQV~~~ 52 (167)
....|.|.+|+.+|+|.|+|++.+.
T Consensus 51 ~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 51 NKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred eeEEEEccCCChhHCEEEEEEEECC
Confidence 4567999999999999999999875
No 142
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=97.08 E-value=0.0013 Score=45.56 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=19.8
Q ss_pred eeEEEeeccc----CCCCeeEEEEeecCC
Q psy7729 30 YNLRIRNVSL----TDDAEFQCQVGPAQY 54 (167)
Q Consensus 30 ySLqIsnVql----sDeG~Y~CQV~~~~~ 54 (167)
.+|.|..++. .|.|.|+|.+.+..+
T Consensus 39 g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G 67 (77)
T cd05874 39 GTLVINIMNGEKAEAYEGVYQCTARNERG 67 (77)
T ss_pred ceEEEeccccCCCCCCCEEEEEEEEcCCC
Confidence 4677777764 388999999999765
No 143
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=97.06 E-value=0.00093 Score=46.96 Aligned_cols=24 Identities=33% Similarity=0.392 Sum_probs=21.3
Q ss_pred eEEEeeccc-CCCCeeEEEEeecCC
Q psy7729 31 NLRIRNVSL-TDDAEFQCQVGPAQY 54 (167)
Q Consensus 31 SLqIsnVql-sDeG~Y~CQV~~~~~ 54 (167)
+|.|.+++. .|+|.|+|.+.+..+
T Consensus 59 ~L~i~~~~~~~d~G~Y~C~a~N~~G 83 (91)
T cd04967 59 NLVISNPSKAKDAGRYQCLASNIVG 83 (91)
T ss_pred EEEEecCCccCCCEEEEEEEEcCCC
Confidence 799999875 899999999998764
No 144
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=96.98 E-value=0.0022 Score=44.14 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=27.8
Q ss_pred eEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 31 NLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 31 SLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
.|.|......|.|.|+|++.+.....++....+|.|
T Consensus 47 ~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l~v 82 (82)
T cd05759 47 TLPITPSDHDTGRTFTCRARNEALPTGKETSVTLDV 82 (82)
T ss_pred EEEEeCceecCCCEEEEEEcCccCCCCcEEEEEEcC
Confidence 678887777888999999999875555556777665
No 145
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=96.95 E-value=0.0021 Score=44.57 Aligned_cols=35 Identities=17% Similarity=0.016 Sum_probs=25.8
Q ss_pred CCCeEEeecCCCCeeeEEEeeccc---C-CCCeeEEEEeecCC
Q psy7729 16 FPSYMRVGDSSHGVYNLRIRNVSL---T-DDAEFQCQVGPAQY 54 (167)
Q Consensus 16 ~~Rysl~Gn~s~GeySLqIsnVql---s-DeG~Y~CQV~~~~~ 54 (167)
.+|+.+.++ ..+|.|.+++. . |+|.|+|.+.+..+
T Consensus 29 ~~~~~~~~~----~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G 67 (77)
T cd05875 29 DPRVSMRRR----SGTLVIDFSGGGRPEDYEGEYQCFARNNLG 67 (77)
T ss_pred CCcEEEeCC----CceEEEeccCCCCCCCCCEEEEEEEEeccc
Confidence 467776532 34899998753 3 68999999999865
No 146
>PHA02785 IL-beta-binding protein; Provisional
Probab=96.91 E-value=0.0021 Score=55.89 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=22.8
Q ss_pred eeeEEEeecccCCCCeeEEEEeecC
Q psy7729 29 VYNLRIRNVSLTDDAEFQCQVGPAQ 53 (167)
Q Consensus 29 eySLqIsnVqlsDeG~Y~CQV~~~~ 53 (167)
...|+|.+|+.+|.|.|+|.+.+..
T Consensus 291 ~~~L~I~~V~~~D~G~Y~C~A~n~~ 315 (326)
T PHA02785 291 TSRLNINPVKEEDATTFTCMAFTIP 315 (326)
T ss_pred eEEEEECCcchhcCeeeEEEEEecc
Confidence 4579999999999999999999975
No 147
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.90 E-value=0.0011 Score=39.70 Aligned_cols=29 Identities=31% Similarity=0.565 Sum_probs=25.5
Q ss_pred CCCCeeeEEEeecccCCCCeeEEEEeecC
Q psy7729 25 SSHGVYNLRIRNVSLTDDAEFQCQVGPAQ 53 (167)
Q Consensus 25 ~s~GeySLqIsnVqlsDeG~Y~CQV~~~~ 53 (167)
.....++|+|.+++..|.|.|.|.+.+..
T Consensus 38 ~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 38 TSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred cceeEEEEEECccCcccCcEEEEEEecCc
Confidence 35678899999999999999999998863
No 148
>KOG4222|consensus
Probab=96.87 E-value=0.00081 Score=68.23 Aligned_cols=57 Identities=26% Similarity=0.366 Sum_probs=47.8
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEecCCccccccccc
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVILPQAISASETLE 79 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVLVPPSip~~~~~g 79 (167)
+||+++.+ +++|+|.+++..|.|+|.|-..+..+ .+.+.+.|+|.+||+...-..+.
T Consensus 269 ~ry~i~~d----~qtl~i~r~tp~deg~y~C~a~n~vG--~l~asa~ltV~apP~f~kkp~dq 325 (1281)
T KOG4222|consen 269 SRYSILDD----TQTLRIDRVTPTDEGTYVCPAENLVG--GLEASATLTVQAPPSFGKKPRDQ 325 (1281)
T ss_pred cceeeeec----cccccccccCCCcccceeeecccccc--ccccccceEEecCcccccccCcc
Confidence 57777753 58999999999999999999999876 46789999999999987755443
No 149
>KOG4194|consensus
Probab=96.85 E-value=0.0011 Score=64.38 Aligned_cols=52 Identities=23% Similarity=0.261 Sum_probs=44.2
Q ss_pred eeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEecCCccccccccccc
Q psy7729 29 VYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVILPQAISASETLENN 81 (167)
Q Consensus 29 eySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVLVPPSip~~~~~g~~ 81 (167)
..-|++.||+..|+|.|+|.|.+..++ .+++.+.|+|.+.|+....+.+.+.
T Consensus 573 ~~~L~L~nVt~td~grYQCVvtN~FGS-tysqk~KltV~~~PsFtktP~dltl 624 (873)
T KOG4194|consen 573 TAILHLDNVTFTDEGRYQCVVTNHFGS-TYSQKAKLTVNQAPSFTKTPEDLTL 624 (873)
T ss_pred hheeeeeeeecccCceEEEEEecccCc-chhheeEEEeeccCccccCccccee
Confidence 347999999999999999999999874 4678999999999999887765543
No 150
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=96.84 E-value=0.0012 Score=49.08 Aligned_cols=35 Identities=17% Similarity=0.073 Sum_probs=28.0
Q ss_pred CCCCCeEEeecCCCCeeeEEEeecccCCCC-eeEEEEeecC
Q psy7729 14 PGFPSYMRVGDSSHGVYNLRIRNVSLTDDA-EFQCQVGPAQ 53 (167)
Q Consensus 14 pg~~Rysl~Gn~s~GeySLqIsnVqlsDeG-~Y~CQV~~~~ 53 (167)
..+.|+++.+ +.+|.|++|+.+|+| .|.|.+.+..
T Consensus 47 ~~~~Ri~~~~-----~GnL~fs~v~~~D~g~~Y~C~a~~~~ 82 (95)
T cd05845 47 TQDERVSMGQ-----NGNLYFANVEEQDSHPDYICHAHFPG 82 (95)
T ss_pred cccccEEECC-----CceEEEEEEehhhCCCCeEEEEEccc
Confidence 3456766553 259999999999999 7999999875
No 151
>KOG4222|consensus
Probab=96.79 E-value=0.0018 Score=65.85 Aligned_cols=60 Identities=20% Similarity=0.087 Sum_probs=45.1
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEecCCccccccccccch
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVILPQAISASETLENNE 82 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVLVPPSip~~~~~g~~e 82 (167)
+|+.++. ..+|-|.||..+|.|+|.|..+++.+- -.+..|.|+|+.+|....-..++.+.
T Consensus 179 ~~~~lis-----gG~LlIsnvrksD~GtY~CVatNmvG~-ReS~~A~lsv~e~P~f~~rp~~~~v~ 238 (1281)
T KOG4222|consen 179 PIIALIS-----GGNLLISNVRKSDEGTYACVATNMVGE-RESIPARLSVQEKPWFWKRPKDLAVL 238 (1281)
T ss_pred eeEEEec-----CCcEEEeccccCCCceeeeeecccccc-cccccceeeeccCCccccccccceee
Confidence 5666663 248999999999999999999998751 12358999999988876644444443
No 152
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=96.77 E-value=0.0012 Score=42.55 Aligned_cols=26 Identities=27% Similarity=0.462 Sum_probs=22.7
Q ss_pred CCCeeeEEEeecccCCCCeeEEEEee
Q psy7729 26 SHGVYNLRIRNVSLTDDAEFQCQVGP 51 (167)
Q Consensus 26 s~GeySLqIsnVqlsDeG~Y~CQV~~ 51 (167)
......|.|++|+.+|.|.|+|.+.+
T Consensus 50 ~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 50 SSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred cceeeEEEEccCCHHhCcEEEEEEEC
Confidence 34567999999999999999999875
No 153
>KOG4194|consensus
Probab=96.68 E-value=0.003 Score=61.52 Aligned_cols=44 Identities=30% Similarity=0.335 Sum_probs=37.3
Q ss_pred eeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEecCCcccc
Q psy7729 29 VYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVILPQAISA 74 (167)
Q Consensus 29 eySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVLVPPSip~ 74 (167)
+-.+-|.||..+|.|.|+|.+++..+ .++++|+|+|+--|+..+
T Consensus 668 dd~f~Itnvk~eD~GiYtC~A~n~AG--~isanAtL~V~e~p~f~~ 711 (873)
T KOG4194|consen 668 DDVFFITNVKIEDQGIYTCTAQNVAG--QISANATLTVLETPSFSI 711 (873)
T ss_pred CCEEEEecccccccceeEEeeecccc--ceeeceEEEEecCCcccc
Confidence 34788999999999999999999876 377899999998766543
No 154
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=96.64 E-value=0.0018 Score=42.51 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=24.9
Q ss_pred EEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 32 LRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 32 LqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
|.|.+++..|.|.|.|++.+..+. ..+..++|+|
T Consensus 47 ~~~~~~~~~~~g~y~C~~~~~~~~-~~s~~~~v~V 80 (80)
T PF13895_consen 47 LFIPNVSPEDSGNYTCRASNGSGS-NTSTSVNVTV 80 (80)
T ss_dssp EEESSEEGGGTEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred eeeeeeccccCEEEEEEEEeCCCC-eEeeeEEeeC
Confidence 888999999999999999886431 1224555554
No 155
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=96.57 E-value=0.0081 Score=44.58 Aligned_cols=38 Identities=21% Similarity=0.236 Sum_probs=31.2
Q ss_pred CCeEEeecC--CCCeeeEEEeecccCC-CCeeEEEEeecCC
Q psy7729 17 PSYMRVGDS--SHGVYNLRIRNVSLTD-DAEFQCQVGPAQY 54 (167)
Q Consensus 17 ~Rysl~Gn~--s~GeySLqIsnVqlsD-eG~Y~CQV~~~~~ 54 (167)
+||++.-.. ......|+|+++..+| .|.|.|.+.++.+
T Consensus 49 ~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G 89 (98)
T cd05898 49 ERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFG 89 (98)
T ss_pred CCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCc
Confidence 699997532 4567789999999888 6899999999865
No 156
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=95.91 E-value=0.0079 Score=42.62 Aligned_cols=32 Identities=13% Similarity=0.288 Sum_probs=23.1
Q ss_pred eeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEE
Q psy7729 30 YNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARL 64 (167)
Q Consensus 30 ySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~L 64 (167)
..|.|.++ .|.|.|+|.+.+..+. ..+..++|
T Consensus 49 s~L~i~~~--~d~g~Y~C~A~N~~G~-~~s~~a~~ 80 (81)
T cd05749 49 SVLNVPGL--NETSKFSCEAHNAKGV-TTSRTGTV 80 (81)
T ss_pred CEEEEccc--cCCeEEEEEEEeccCc-EEeeeEEe
Confidence 47999887 5899999999998652 12235555
No 157
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=95.88 E-value=0.028 Score=40.51 Aligned_cols=36 Identities=17% Similarity=0.221 Sum_probs=26.3
Q ss_pred eEEEeecccCCCCeeEEEEeecCCCCC-eeeeEEEEE
Q psy7729 31 NLRIRNVSLTDDAEFQCQVGPAQYHKP-IRANARLTV 66 (167)
Q Consensus 31 SLqIsnVqlsDeG~Y~CQV~~~~~~~~-iss~a~LtV 66 (167)
.|+|.-+...|.|.|+|++.+.....+ ......|.|
T Consensus 44 ~L~~~~~~~Ddg~~~~C~A~n~a~~~~~~~~~~~l~V 80 (80)
T cd05885 44 TIRFPVDRKDDGAILSCEASHPALVSQKKQTQYSLDV 80 (80)
T ss_pred EEEEEeeeccCCcEEEEEEEChhhCCCCeeEEEEEeC
Confidence 699988888999999999999865322 223445543
No 158
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=95.87 E-value=0.01 Score=42.67 Aligned_cols=25 Identities=8% Similarity=0.106 Sum_probs=21.5
Q ss_pred CeeeEEEeecccCCCCeeEEEEeec
Q psy7729 28 GVYNLRIRNVSLTDDAEFQCQVGPA 52 (167)
Q Consensus 28 GeySLqIsnVqlsDeG~Y~CQV~~~ 52 (167)
...++.|.+|+..|+|+|.|.....
T Consensus 53 ~~a~f~I~~~~~~~~G~Y~C~~~~~ 77 (94)
T cd05711 53 FQASFPLGPVTPAHAGTYRCYGSYN 77 (94)
T ss_pred EEEEEEecCCCcccCEEEEEEEECC
Confidence 3568899999999999999998653
No 159
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=95.16 E-value=0.061 Score=40.08 Aligned_cols=38 Identities=13% Similarity=0.289 Sum_probs=28.7
Q ss_pred CCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEec
Q psy7729 27 HGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVIL 68 (167)
Q Consensus 27 ~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVLV 68 (167)
.+.++|.+.+|+..|+|+++|.|.... ....+..+|.|
T Consensus 48 ~~~ktL~~~qv~~qdSG~WtC~V~~~~----k~~~~~~~V~V 85 (88)
T cd07694 48 QDKKTLNLVQLGPNDSGTWDCIVSVNS----SEKTLKLDIKV 85 (88)
T ss_pred CCccEEEeceeCcccCCEEEEEEEECc----eEEEEEeeEEE
Confidence 378899999999999999999998752 23444444443
No 160
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=95.07 E-value=0.041 Score=51.32 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=38.2
Q ss_pred CCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEecCCccc
Q psy7729 27 HGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVILPQAIS 73 (167)
Q Consensus 27 ~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVLVPPSip 73 (167)
...|++.+.|++.+|+|.|.|.+..... .+.+..|.|.|-|.+-
T Consensus 78 dkeYsf~~~Nvs~sdEGrYrCIFYLn~~---EtyrH~I~vrVmPKId 121 (500)
T PHA02914 78 DKEYSFIEENIGEHEDGDFKCIFYLGDN---ESHKHEILVRKAPKID 121 (500)
T ss_pred cceeEEEecCcccccCCcEEEEEEeCCc---eeEEEEEEEEEcccee
Confidence 4679999999999999999999999742 4468899999999887
No 161
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=94.33 E-value=0.099 Score=39.60 Aligned_cols=25 Identities=12% Similarity=0.203 Sum_probs=22.8
Q ss_pred eeEEEeecccCCCCeeEEEEeecCC
Q psy7729 30 YNLRIRNVSLTDDAEFQCQVGPAQY 54 (167)
Q Consensus 30 ySLqIsnVqlsDeG~Y~CQV~~~~~ 54 (167)
..|+|..+..+|.|.|+|.+.+...
T Consensus 65 S~L~L~Rlk~~E~G~YTf~a~N~~~ 89 (101)
T cd05860 65 SELHLTRLKGTEGGTYTFLVSNSDA 89 (101)
T ss_pred EEEEEeecChhhCcEEEEEEECCCC
Confidence 5799999999999999999999854
No 162
>KOG4221|consensus
Probab=94.31 E-value=0.077 Score=54.82 Aligned_cols=49 Identities=22% Similarity=0.324 Sum_probs=39.5
Q ss_pred CCCCCCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEe
Q psy7729 13 IPGFPSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVI 67 (167)
Q Consensus 13 lpg~~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVL 67 (167)
++..+|+-++.+ ..|+|++++.+|.|.|+|.|.+...+ .++..|.|+|+
T Consensus 181 l~~~~r~i~lps-----G~L~I~~~qp~d~g~yrc~vt~g~~~-r~S~~a~ltv~ 229 (1381)
T KOG4221|consen 181 LPLDSRVIVLPS-----GALEISGLQPSDTGEYRCVVTGGASQ-RTSNEAELTVL 229 (1381)
T ss_pred ccCCCcEEEcCC-----CcEEecccccCCCceEEEEEecCCcC-CccceeEEEec
Confidence 677788777765 38999999999999999999987532 34568888887
No 163
>PHA03282 envelope glycoprotein E; Provisional
Probab=93.88 E-value=0.18 Score=47.78 Aligned_cols=62 Identities=16% Similarity=0.096 Sum_probs=40.6
Q ss_pred CCCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEecCCccccccccccchhhh
Q psy7729 16 FPSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVILPQAISASETLENNEWEE 85 (167)
Q Consensus 16 ~~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVLVPPSip~~~~~g~~e~~~ 85 (167)
.+|+++.. -+|.|.+++.+|+|.|+=.+...++. ..+.+.|.++|+|......-.|...+-+
T Consensus 116 ~~rvs~~n------~tl~l~~a~~~DsG~Y~L~~~~~~~~--~~~~~~v~l~V~p~~~p~~~~~~~~~~~ 177 (540)
T PHA03282 116 PPRVAVVN------GTLVLREARETDSGMYVLSVSRAPNS--TAARAVVFLVVGPRPVPTPPGGTPPPDD 177 (540)
T ss_pred CcceeEec------ceEEEeeccccCCceEEEEecCCCCc--hhheEEEEEEecCCCCCCCCCCCCCccc
Confidence 57888872 37999999999999999998766542 2355556666666533333334444433
No 164
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=93.21 E-value=0.22 Score=34.39 Aligned_cols=24 Identities=13% Similarity=0.314 Sum_probs=17.9
Q ss_pred eEEEeecccCCCCeeEEEEeecCC
Q psy7729 31 NLRIRNVSLTDDAEFQCQVGPAQY 54 (167)
Q Consensus 31 SLqIsnVqlsDeG~Y~CQV~~~~~ 54 (167)
.|+|......|.|.|+|+|.+...
T Consensus 63 ~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 63 QLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred EEEECHHHhCCCCCEEEEEEeCCC
Confidence 355555555699999999999753
No 165
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=92.59 E-value=0.15 Score=39.37 Aligned_cols=34 Identities=12% Similarity=0.048 Sum_probs=26.5
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCC
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQY 54 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~ 54 (167)
.||.+. ..++.|.|+.++..|+|.|.=.|....|
T Consensus 62 ~r~~F~----~enlaLlIkaAq~qDSG~Y~LEvT~~sG 95 (108)
T PF11465_consen 62 NRFNFT----SENLALLIKAAQPQDSGLYCLEVTNESG 95 (108)
T ss_dssp HHEEEE----TTTTEEEESS-SGGG-EEEEEEEEETTS
T ss_pred ceEeee----ccCceEEEeecCcccCceEEEEEEcCCC
Confidence 566655 3678999999999999999999999754
No 166
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=92.40 E-value=0.081 Score=41.86 Aligned_cols=48 Identities=17% Similarity=0.295 Sum_probs=32.1
Q ss_pred CCCCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 15 GFPSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 15 g~~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
.++|..| .....|++||+|...+.- .|.|+|.|..... .....+.|.+
T Consensus 72 ~f~sa~i-~~l~kG~aSL~~~~~~a~-~GnYTCeVt~~~~--ege~~i~Lk~ 119 (130)
T PF08204_consen 72 NFPSAKI-SELLKGNASLKMDKSDAV-EGNYTCEVTELSR--EGETTIELKY 119 (130)
T ss_dssp GGTT-BE-GGGGGTB--EEEEHHHHH--EEEEEEEEETTE--EEEEEEEEEE
T ss_pred Cccccch-hHhhCCCEEEEEcchhcc-ccceEEEEEecCC--CceEEEEEEE
Confidence 3467777 556789999999998888 9999999998742 1224555555
No 167
>PHA03269 envelope glycoprotein C; Provisional
Probab=91.88 E-value=0.53 Score=44.94 Aligned_cols=60 Identities=8% Similarity=0.110 Sum_probs=43.7
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCC-eeeeEEEEEecCCcccccc
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKP-IRANARLTVILPQAISASE 76 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~-iss~a~LtVLVPPSip~~~ 76 (167)
.+|.+--..+.+.+.|.|.+|+..+.|+|+=.+.+...... ....++|.++-+|++....
T Consensus 276 ~~yi~p~~a~p~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p 336 (566)
T PHA03269 276 EKYIIPDRKTTSDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIG 336 (566)
T ss_pred ceEEeccCCCCCccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccC
Confidence 56777656678899999999999999999866665432212 2257777777799877643
No 168
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=91.51 E-value=0.24 Score=43.63 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=31.3
Q ss_pred CCC-CCCCCCCCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecC
Q psy7729 8 GFN-SIIPGFPSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQ 53 (167)
Q Consensus 8 G~~-~~lpg~~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~ 53 (167)
|.+ +.+.+..+++|..+ ..|.|.+.+.+++|.|+|.+....
T Consensus 19 GP~g~~l~gn~~~nIT~T-----G~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 19 GPNGKPLSGNSYVNITET-----GKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCCcccCCCCeEEEccC-----ceEEeeccccccCCceEEEEEEEe
Confidence 444 44666677777643 369999999999999999997764
No 169
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=90.31 E-value=1.1 Score=31.47 Aligned_cols=35 Identities=26% Similarity=0.463 Sum_probs=20.6
Q ss_pred EEEeecccCCCCeeEEEEeecCCCCC-eeeeEEEEE
Q psy7729 32 LRIRNVSLTDDAEFQCQVGPAQYHKP-IRANARLTV 66 (167)
Q Consensus 32 LqIsnVqlsDeG~Y~CQV~~~~~~~~-iss~a~LtV 66 (167)
|.|.-....|...|+|+|.+.....+ +.....|.|
T Consensus 48 l~~~~~~~d~g~~~tC~v~h~~l~~~~~~~~~~~~~ 83 (83)
T cd07705 48 VEFQVTREDDGAEITCSVGHESLHDSDRSTSQRIEV 83 (83)
T ss_pred EEEEecchhCCCEEEEEEECcccCCCCceeEEEeeC
Confidence 44433344466789999999864332 323555543
No 170
>PHA03270 envelope glycoprotein C; Provisional
Probab=89.89 E-value=1.1 Score=42.19 Aligned_cols=58 Identities=17% Similarity=0.212 Sum_probs=43.4
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEecCCcccccc
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVILPQAISASE 76 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVLVPPSip~~~ 76 (167)
.+|++.|.+ ....|.|..++....|+|+=.+....+...+...++|+.+-+|++.+..
T Consensus 171 ~~y~~~g~~--p~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~ 228 (466)
T PHA03270 171 RLYSVEGTF--PTQRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRP 228 (466)
T ss_pred ccccccCCC--CcceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccC
Confidence 378888754 3457999999999999999999887542223356777777899977643
No 171
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=89.77 E-value=1.4 Score=31.86 Aligned_cols=36 Identities=22% Similarity=0.328 Sum_probs=26.4
Q ss_pred eEEEeecccCCCCe-eEEEEeecCCCCCeeeeEEEEEec
Q psy7729 31 NLRIRNVSLTDDAE-FQCQVGPAQYHKPIRANARLTVIL 68 (167)
Q Consensus 31 SLqIsnVqlsDeG~-Y~CQV~~~~~~~~iss~a~LtVLV 68 (167)
+|+| .++..|+|. |+|++.+.... ++....+|.|+.
T Consensus 45 ~L~~-~p~~eDdG~~~~C~a~~~~l~-~~~~~~~L~V~y 81 (82)
T cd05883 45 QLML-KVTKEDDGVPVICLVDHPAVK-DLQTQRYLEVQY 81 (82)
T ss_pred EEEE-ECchhhCCCEEEEEEcCcccC-CceeeEEEEEEE
Confidence 5666 667777766 99999997642 466788888874
No 172
>PHA03273 envelope glycoprotein C; Provisional
Probab=89.45 E-value=0.93 Score=42.85 Aligned_cols=58 Identities=12% Similarity=0.146 Sum_probs=38.8
Q ss_pred CCeEEeecCCC--C--eeeEEEeecccCCCCeeEEEEeecCCCCCeee--eEEEEEecCCcccccc
Q psy7729 17 PSYMRVGDSSH--G--VYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRA--NARLTVILPQAISASE 76 (167)
Q Consensus 17 ~Rysl~Gn~s~--G--eySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss--~a~LtVLVPPSip~~~ 76 (167)
|+|++.+..-. + .+.|.|..++..+.|.|+=.+....+ .... .+++..+-||++.+..
T Consensus 181 p~y~l~~~p~~p~~~~~~~LtI~sltaaTeGvYtWr~~~~n~--t~~~~~~VtV~~yr~Psvsv~~ 244 (486)
T PHA03273 181 PKRQLFNLPLHTEGGTKFPLTIKSVDWRTAGVYVWSLYAKNG--TLVNSTSVTVSTYNAPLVDLSV 244 (486)
T ss_pred cchhhccCCCCCCCCCccceEEEecchhhceEEEEEEecCCC--ceeeeeEEEEEEecCCcccccC
Confidence 56777764321 3 48899999999999999877666422 2333 4444446799876643
No 173
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=89.08 E-value=1.4 Score=30.52 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=14.5
Q ss_pred EEEeecccCCCCeeEEEEeecCC
Q psy7729 32 LRIRNVSLTDDAEFQCQVGPAQY 54 (167)
Q Consensus 32 LqIsnVqlsDeG~Y~CQV~~~~~ 54 (167)
|+|.-....|.+.|+|+|.+...
T Consensus 47 l~~~~~~~d~g~~~~C~v~h~~l 69 (82)
T cd05761 47 LRFQVDREDDGAPIICRVDHPAL 69 (82)
T ss_pred EEEEcchhhCCCEEEEEEeChhc
Confidence 44433333345689999998764
No 174
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=85.78 E-value=3.5 Score=30.94 Aligned_cols=34 Identities=18% Similarity=0.396 Sum_probs=19.7
Q ss_pred cccCCCC-eeEEEEeecCCCCCeeee--EEEEEecCC
Q psy7729 37 VSLTDDA-EFQCQVGPAQYHKPIRAN--ARLTVILPQ 70 (167)
Q Consensus 37 VqlsDeG-~Y~CQV~~~~~~~~iss~--a~LtVLVPP 70 (167)
....|.| .|.|+|.+.....++... ..-.+-|||
T Consensus 75 ~~~~d~~~~ytC~V~H~~l~~p~~~~~~~~~~~~~~~ 111 (111)
T cd05772 75 LTEDDVHSQVTCEVQHRTLQAPLRGTYNLSQALRVPP 111 (111)
T ss_pred CccccccCceEEEEEeCCCCCCeEEEEEcccEEEcCC
Confidence 3444544 499999998644444433 333344666
No 175
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=83.61 E-value=3.1 Score=30.42 Aligned_cols=19 Identities=21% Similarity=0.448 Sum_probs=15.0
Q ss_pred ecccCCCCeeEEEEeecCC
Q psy7729 36 NVSLTDDAEFQCQVGPAQY 54 (167)
Q Consensus 36 nVqlsDeG~Y~CQV~~~~~ 54 (167)
.++..+...|.|+|.+.+.
T Consensus 66 ~~~~~~~~~ysC~V~H~~l 84 (93)
T cd05770 66 EFTPTKGDEYACRVRHNSM 84 (93)
T ss_pred EECCCCCCeEEEEEEECCC
Confidence 4566788889999999753
No 176
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=80.86 E-value=4.6 Score=28.49 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=16.0
Q ss_pred eEEEeecccCCCCeeEEEEeecCC
Q psy7729 31 NLRIRNVSLTDDAEFQCQVGPAQY 54 (167)
Q Consensus 31 SLqIsnVqlsDeG~Y~CQV~~~~~ 54 (167)
+|.|......|...|+|+|.+...
T Consensus 47 ~L~~~~~~~d~g~~ytC~v~h~~l 70 (83)
T cd05884 47 TLDFRVDRSDDGVAIICRVDHESL 70 (83)
T ss_pred EEEEEcccccCCCEEEEEEechhc
Confidence 455543334456679999999764
No 177
>PHA03271 envelope glycoprotein C; Provisional
Probab=80.42 E-value=6.3 Score=37.31 Aligned_cols=58 Identities=19% Similarity=0.350 Sum_probs=37.7
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecC-CCCCee-eeEEEEEe-cCCcccccc
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQ-YHKPIR-ANARLTVI-LPQAISASE 76 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~-~~~~is-s~a~LtVL-VPPSip~~~ 76 (167)
..|-|--+.+..+++|.|++|..+|+| |. ++.... -+.++. +...+.|. -||++....
T Consensus 194 ~ky~i~~~ktt~~m~v~I~svD~~t~G-y~-~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a 254 (490)
T PHA03271 194 NKYFIWINKTTNTMGVEIRNVDYADNG-YI-QVIMRDPFNRPLLDKHIYIRVCQRPASVDVLA 254 (490)
T ss_pred ceeEEeeccccceeeEEEEEeecccce-EE-EEEecCCCCCccccceEEEEEEecCCCccccC
Confidence 456666566889999999999999999 44 554433 222333 45555543 477776543
No 178
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=78.39 E-value=3.7 Score=29.87 Aligned_cols=24 Identities=13% Similarity=0.310 Sum_probs=15.8
Q ss_pred eEEEeecccCCCCeeEEEEeecCC
Q psy7729 31 NLRIRNVSLTDDAEFQCQVGPAQY 54 (167)
Q Consensus 31 SLqIsnVqlsDeG~Y~CQV~~~~~ 54 (167)
.|.|..-...+...|.|+|.+...
T Consensus 67 ~L~v~~~~w~~~~~~sC~V~H~~l 90 (100)
T cd07699 67 YLTLTKSDWNKHKVYTCEVTHEGL 90 (100)
T ss_pred EEEEcHHHhCCCCeEEEEEEecCC
Confidence 344444444457889999999854
No 179
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=77.57 E-value=4.5 Score=27.81 Aligned_cols=29 Identities=24% Similarity=0.510 Sum_probs=18.8
Q ss_pred CCCeeeEE-EeecccCCCCeeEEEEeecCC
Q psy7729 26 SHGVYNLR-IRNVSLTDDAEFQCQVGPAQY 54 (167)
Q Consensus 26 s~GeySLq-IsnVqlsDeG~Y~CQV~~~~~ 54 (167)
..|.|+++ +..|...+...|.|+|.+...
T Consensus 49 ~dgty~~~s~l~v~~~~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 49 SDGTYSVTSSLTVTWNSGDEYSCRVTHESL 78 (83)
T ss_dssp TTSEEEEEEEEEEETTTTGGEEEEEEETTS
T ss_pred cccceeeeEEEEecCCCCCEEEEEEEECCC
Confidence 34555544 334446666789999999754
No 180
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=77.14 E-value=8.5 Score=27.17 Aligned_cols=28 Identities=29% Similarity=0.535 Sum_probs=20.0
Q ss_pred CCeeeE-EEeecccCCCCeeEEEEeecCC
Q psy7729 27 HGVYNL-RIRNVSLTDDAEFQCQVGPAQY 54 (167)
Q Consensus 27 ~GeySL-qIsnVqlsDeG~Y~CQV~~~~~ 54 (167)
.|.|++ .+..|...|.+.|+|+|.+...
T Consensus 56 d~ty~~~s~l~v~~~~~~~ytC~V~H~~~ 84 (93)
T cd07698 56 DGTYQLWVTLEVPPEDKARYSCRVEHSGL 84 (93)
T ss_pred CCeEEEEEEEEECCCCCCEEEEEEEeCCC
Confidence 355554 3456666799999999999754
No 181
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=77.03 E-value=8.2 Score=26.17 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=16.7
Q ss_pred eEEEeecccCCCCeeEEEEeecC
Q psy7729 31 NLRIRNVSLTDDAEFQCQVGPAQ 53 (167)
Q Consensus 31 SLqIsnVqlsDeG~Y~CQV~~~~ 53 (167)
.|.|......+...|+|.|.+..
T Consensus 49 ~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 49 YLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred EEEEccccCCCCCEEEEEEEEcC
Confidence 35555555577788999998874
No 182
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=75.52 E-value=9 Score=27.89 Aligned_cols=17 Identities=12% Similarity=0.212 Sum_probs=13.0
Q ss_pred ccCCCCeeEEEEeecCC
Q psy7729 38 SLTDDAEFQCQVGPAQY 54 (167)
Q Consensus 38 qlsDeG~Y~CQV~~~~~ 54 (167)
...+...|+|+|.+.+.
T Consensus 69 ~~~~~~~ytC~V~H~~l 85 (94)
T cd05767 69 TPEEGDIYSCIVEHWGL 85 (94)
T ss_pred ECCCCCeEEEEEEeCCC
Confidence 34567789999999753
No 183
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=75.24 E-value=9.8 Score=27.70 Aligned_cols=35 Identities=26% Similarity=0.425 Sum_probs=21.6
Q ss_pred eEEEeecccCCCC-eeEEEEeecCCCCCeeeeEEEEE
Q psy7729 31 NLRIRNVSLTDDA-EFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 31 SLqIsnVqlsDeG-~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
.|+| ..+..|+| .|+|++.+.....++...+.|.|
T Consensus 60 ~l~~-~p~~~d~G~~~tC~v~h~~l~~~~~~~~~L~V 95 (95)
T cd05719 60 EYRL-VPSREANGKELTCVVSHPTLQEPQRFSVTLNV 95 (95)
T ss_pred EEEE-ecCHHHCCCEEEEEEeCcccCCCeEEEEEeeC
Confidence 3444 34455555 59999988764444555666654
No 184
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=75.01 E-value=7.5 Score=31.88 Aligned_cols=28 Identities=25% Similarity=0.123 Sum_probs=24.8
Q ss_pred CCeeeEEEeecccCCCCeeEEEEeecCC
Q psy7729 27 HGVYNLRIRNVSLTDDAEFQCQVGPAQY 54 (167)
Q Consensus 27 ~GeySLqIsnVqlsDeG~Y~CQV~~~~~ 54 (167)
....-|+|++.+..|+|.|.=.|+....
T Consensus 121 ~~~~lL~i~~p~~~dsG~Y~lRV~l~~~ 148 (161)
T PF01688_consen 121 ENGVLLRIRNPRPEDSGIYYLRVWLDGA 148 (161)
T ss_pred CcceEEEeCCCCcccceEEEEEEEECCC
Confidence 4568899999999999999999999853
No 185
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=73.26 E-value=6.7 Score=28.76 Aligned_cols=15 Identities=27% Similarity=0.494 Sum_probs=11.6
Q ss_pred CCCeeEEEEeecCCC
Q psy7729 41 DDAEFQCQVGPAQYH 55 (167)
Q Consensus 41 DeG~Y~CQV~~~~~~ 55 (167)
+...|.|+|.+....
T Consensus 79 ~~~~ytC~V~H~~l~ 93 (102)
T cd05768 79 AGDVFTCVVGHEALP 93 (102)
T ss_pred CCCcEEEEeEeCCCC
Confidence 557799999998543
No 186
>PHA02982 hypothetical protein; Provisional
Probab=72.36 E-value=6.7 Score=34.20 Aligned_cols=27 Identities=11% Similarity=0.238 Sum_probs=23.6
Q ss_pred CCeeeEEEeecccCCCCeeEEEEeecC
Q psy7729 27 HGVYNLRIRNVSLTDDAEFQCQVGPAQ 53 (167)
Q Consensus 27 ~GeySLqIsnVqlsDeG~Y~CQV~~~~ 53 (167)
.+.-+|+|.++..+-.|-|+|++....
T Consensus 97 g~~STLTIkk~~i~N~GCYtc~~ks~~ 123 (251)
T PHA02982 97 GNSSTFTMKKPDPQNLGCFTCEAKDAE 123 (251)
T ss_pred ccceeEEeccCCcccCCceEEEEecCC
Confidence 345699999999999999999998864
No 187
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=72.20 E-value=9.7 Score=28.50 Aligned_cols=24 Identities=17% Similarity=0.361 Sum_probs=14.8
Q ss_pred eEEEeecccCCCCeeEEEEeecCC
Q psy7729 31 NLRIRNVSLTDDAEFQCQVGPAQY 54 (167)
Q Consensus 31 SLqIsnVqlsDeG~Y~CQV~~~~~ 54 (167)
.|.|..-...+.+.|.|.|.+...
T Consensus 109 ~L~v~~~~~~~g~~ytC~V~H~~l 132 (139)
T cd05771 109 HLTLEPGTEDAGATYTCRVSHVSL 132 (139)
T ss_pred EEEecCCccCCCCEEEEEEEcCCC
Confidence 344443333346689999988753
No 188
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=70.13 E-value=14 Score=27.17 Aligned_cols=35 Identities=17% Similarity=0.304 Sum_probs=20.3
Q ss_pred eEEEeecccCCCC-eeEEEEeecCCCCCeeeeEEEEE
Q psy7729 31 NLRIRNVSLTDDA-EFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 31 SLqIsnVqlsDeG-~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
.|+| ..+..|+| .|+|++.+.....+..-.+.|.|
T Consensus 60 ~l~~-~P~~~d~Gk~ltC~v~h~al~~~~~~~~~l~v 95 (95)
T cd07703 60 EYSL-VPTPEANGKEVTCKVEHETLQEPQLLPVTLSV 95 (95)
T ss_pred EEEE-ecCHHHCCCEEEEEEeCcccCCCeEEEEEEeC
Confidence 3444 34455555 59999999764333444555543
No 189
>PF11622 DUF3251: Protein of unknown function (DUF3251); InterPro: IPR021658 This entry represents immunoglobulin-like domain found in a group of putative lipoprotein YajI. ; PDB: 2JWY_A.
Probab=69.34 E-value=9.4 Score=31.56 Aligned_cols=32 Identities=19% Similarity=0.375 Sum_probs=19.5
Q ss_pred CCCCCCCeEEeecCCCCeeeEEEeecccCCCCe
Q psy7729 12 IIPGFPSYMRVGDSSHGVYNLRIRNVSLTDDAE 44 (167)
Q Consensus 12 ~lpg~~Rysl~Gn~s~GeySLqIsnVqlsDeG~ 44 (167)
.+|+...|.++. ..-|...++|++|...++|+
T Consensus 47 LlP~a~t~~~L~-s~iG~L~~~l~~I~~~AnGs 78 (165)
T PF11622_consen 47 LLPAANTPARLN-SQIGTLRLSLSNIEPEANGS 78 (165)
T ss_dssp E-TTT---EEEE--SS-EEEEEEEEEEE-SSSE
T ss_pred ECcCCCCceEcc-cceeEEEEEEecccccCCcc
Confidence 356665556554 36688999999999999884
No 190
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=67.86 E-value=12 Score=27.23 Aligned_cols=14 Identities=29% Similarity=0.603 Sum_probs=10.5
Q ss_pred CCCeeEEEEeecCC
Q psy7729 41 DDAEFQCQVGPAQY 54 (167)
Q Consensus 41 DeG~Y~CQV~~~~~ 54 (167)
+.-.|.|.|.+...
T Consensus 74 ~g~~ysC~V~H~~l 87 (96)
T cd07696 74 SGDTFQCKVTHPDL 87 (96)
T ss_pred CCCcEEEEEECCCC
Confidence 34569999999754
No 191
>PHA03290 envelope glycoprotein I; Provisional
Probab=67.56 E-value=9 Score=35.13 Aligned_cols=42 Identities=10% Similarity=0.030 Sum_probs=31.0
Q ss_pred CCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEecCC
Q psy7729 27 HGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVILPQ 70 (167)
Q Consensus 27 ~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVLVPP 70 (167)
....-|+|++...+|+|.|.=.|+..+.. ......|.|.|.|
T Consensus 126 e~~vLL~I~~P~~~DSGiY~LRV~Ldga~--~sDvF~lsv~Vyp 167 (357)
T PHA03290 126 DAEIIFKINKPGIEDAGIYLLLVQLDHSR--LFDGFFLGLNVYP 167 (357)
T ss_pred CcceEEEeCCCCcccCeeEEEEEEeCCCc--ccceEEEEEEEec
Confidence 45688999999999999999999997532 2334455555533
No 192
>PHA03282 envelope glycoprotein E; Provisional
Probab=66.80 E-value=5.2 Score=38.30 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=23.5
Q ss_pred CeeeEEEeecccCCCCeeEEEEeecC
Q psy7729 28 GVYNLRIRNVSLTDDAEFQCQVGPAQ 53 (167)
Q Consensus 28 GeySLqIsnVqlsDeG~Y~CQV~~~~ 53 (167)
+..+|+|.|++.+++|.|.|.+..++
T Consensus 331 n~VdL~F~nAp~saSGLYVfVl~yNG 356 (540)
T PHA03282 331 HTVNLQLRDASEASGGLYVCVVYVNG 356 (540)
T ss_pred CccceEecCCCcccCceEEEEEEECC
Confidence 45699999999999999999998874
No 193
>PHA03292 envelope glycoprotein I; Provisional
Probab=66.18 E-value=12 Score=34.88 Aligned_cols=41 Identities=12% Similarity=0.027 Sum_probs=30.9
Q ss_pred CCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEecC
Q psy7729 27 HGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVILP 69 (167)
Q Consensus 27 ~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVLVP 69 (167)
....-|+|++-...|+|.|.=.|+..... ......|.|+|.
T Consensus 125 e~~vLL~I~~P~~~DSGiY~LRV~Ldga~--~aDvF~lsvfVy 165 (413)
T PHA03292 125 ETNVLLNITGPQPADSGAYILRVKLDHAP--TADVFGLSAFVY 165 (413)
T ss_pred CcceEEEeCCCCcccceeEEEEEEeCCCc--cCceeEEEEEEe
Confidence 35689999999999999999999998532 224445666653
No 194
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=62.50 E-value=14 Score=26.72 Aligned_cols=22 Identities=14% Similarity=0.366 Sum_probs=14.3
Q ss_pred EEEeecccCCCCeeEEEEeecC
Q psy7729 32 LRIRNVSLTDDAEFQCQVGPAQ 53 (167)
Q Consensus 32 LqIsnVqlsDeG~Y~CQV~~~~ 53 (167)
|.|..-...+...|.|+|.+..
T Consensus 65 L~v~~~~w~~~~~ytC~V~H~~ 86 (94)
T cd05847 65 LNVTQEDWKSGKTYTCKVTHQG 86 (94)
T ss_pred EEEchHHhcCCCeEEEEEEECC
Confidence 3344333345678999999974
No 195
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=61.99 E-value=18 Score=26.55 Aligned_cols=11 Identities=18% Similarity=0.443 Sum_probs=8.8
Q ss_pred CeeEEEEeecC
Q psy7729 43 AEFQCQVGPAQ 53 (167)
Q Consensus 43 G~Y~CQV~~~~ 53 (167)
..|+|+|.+.+
T Consensus 75 ~~ysC~V~H~g 85 (96)
T cd07697 75 KKFRCIYKHEG 85 (96)
T ss_pred CeEEEEEEECC
Confidence 34999999964
No 196
>PHA03286 envelope glycoprotein E; Provisional
Probab=61.98 E-value=8.5 Score=36.60 Aligned_cols=33 Identities=12% Similarity=0.074 Sum_probs=26.6
Q ss_pred CeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecC
Q psy7729 18 SYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQ 53 (167)
Q Consensus 18 Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~ 53 (167)
|+.++.. +.-+|++.|++.+|+|.|.|.+..++
T Consensus 298 ~la~l~~---~i~nL~f~nA~~s~SGLYVfVl~yNG 330 (492)
T PHA03286 298 RLAFLES---DIPSFRLANAQPTDAGLYVVVALYNG 330 (492)
T ss_pred cceeecc---CCCceeecCCCcccCceEEEEEEECC
Confidence 6666643 33369999999999999999998875
No 197
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=61.30 E-value=19 Score=25.85 Aligned_cols=21 Identities=10% Similarity=0.202 Sum_probs=17.4
Q ss_pred eEEEeecccCCCCeeEEEEee
Q psy7729 31 NLRIRNVSLTDDAEFQCQVGP 51 (167)
Q Consensus 31 SLqIsnVqlsDeG~Y~CQV~~ 51 (167)
.+...+.+..|+|.+.|.+..
T Consensus 44 ~~~~~~~~~~d~G~w~C~a~~ 64 (80)
T PF05790_consen 44 LVSTFTPTTEDSGTWVCTASD 64 (80)
T ss_dssp EEEEESBTCGGSEEEEEEEEE
T ss_pred EEEEecCCCCCCEEEEEEEcC
Confidence 456777888999999999953
No 198
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=60.22 E-value=31 Score=24.77 Aligned_cols=19 Identities=11% Similarity=0.333 Sum_probs=14.3
Q ss_pred ecccCCCCeeEEEEeecCC
Q psy7729 36 NVSLTDDAEFQCQVGPAQY 54 (167)
Q Consensus 36 nVqlsDeG~Y~CQV~~~~~ 54 (167)
.+...+...|+|+|.+...
T Consensus 66 ~~~~~~~~~ysC~V~H~~l 84 (94)
T cd05766 66 ETTPSRGDTYTCVVEHSSL 84 (94)
T ss_pred EEcCCCCCEEEEEEEeCCC
Confidence 4455677789999999854
No 199
>PF10572 UPF0556: Uncharacterised protein family UPF0556; InterPro: IPR018887 This family of proteins has no known function.
Probab=59.19 E-value=29 Score=28.59 Aligned_cols=39 Identities=13% Similarity=0.237 Sum_probs=23.0
Q ss_pred CCCeeeEEEeecccCCCCeeEEEEeecCCCCCe-eeeEEEEE
Q psy7729 26 SHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPI-RANARLTV 66 (167)
Q Consensus 26 s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~i-ss~a~LtV 66 (167)
++-+|.+.|. ...|++.|.|.|+.+.+...+ ....++.|
T Consensus 58 TNEqW~msi~--~s~d~~~~sC~I~RPqgkSYL~F~qFkaev 97 (158)
T PF10572_consen 58 TNEQWQMSIG--LSDDNGHYSCIIWRPQGKSYLFFTQFKAEV 97 (158)
T ss_pred ccceEEEEee--ecCCCCceEEEEECCCCCcEEEEEEEEEEE
Confidence 4566755442 134888999999998643221 13444444
No 200
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=58.38 E-value=13 Score=26.74 Aligned_cols=34 Identities=12% Similarity=0.157 Sum_probs=24.8
Q ss_pred eeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEec
Q psy7729 29 VYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVIL 68 (167)
Q Consensus 29 eySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVLV 68 (167)
+.+|.+.++...=.|.|+|+..... ....|+|++
T Consensus 32 ~~tlnLGs~~~DPRG~Y~C~~s~~~------~~~~LQVyY 65 (69)
T cd07691 32 NTLLDLGSRINDPRGTYSCKESEPN------KEKTLQVYY 65 (69)
T ss_pred ccEEeccCcccCCCcceEecCccCC------CcEEEEEEE
Confidence 4577788888888999999886621 455666654
No 201
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=58.02 E-value=6.6 Score=36.51 Aligned_cols=27 Identities=11% Similarity=0.021 Sum_probs=21.3
Q ss_pred CCeeeEEEeecccCCCCeeEEEEeecC
Q psy7729 27 HGVYNLRIRNVSLTDDAEFQCQVGPAQ 53 (167)
Q Consensus 27 ~GeySLqIsnVqlsDeG~Y~CQV~~~~ 53 (167)
.+..+|++.|++.+++|.|.|.+..++
T Consensus 266 ~~~~~l~f~~a~~~~sGLYv~V~~~ng 292 (439)
T PF02480_consen 266 SNGVDLQFTNAPESASGLYVFVVYYNG 292 (439)
T ss_dssp TTSSSEEESS--GGG-EEEEEEEEETT
T ss_pred CCCcceEecCCCcccCceEEEEEEECC
Confidence 466799999999999999999998874
No 202
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=56.71 E-value=42 Score=25.47 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=14.7
Q ss_pred EEEeecccCC-CCeeEEEEeecCC
Q psy7729 32 LRIRNVSLTD-DAEFQCQVGPAQY 54 (167)
Q Consensus 32 LqIsnVqlsD-eG~Y~CQV~~~~~ 54 (167)
|.|......| ...|.|+|.+.+.
T Consensus 70 L~v~~~~w~~~~~~ytC~V~H~g~ 93 (115)
T cd05769 70 LRVSATEWFNPRNTFTCIVQFYGG 93 (115)
T ss_pred EEEChHHhccCCCeEEEEEEEeCC
Confidence 4444333334 5679999999853
No 203
>KOG1480|consensus
Probab=55.74 E-value=8 Score=39.08 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=23.7
Q ss_pred CeeeEEEeecccCCCCeeEEEEeecCC
Q psy7729 28 GVYNLRIRNVSLTDDAEFQCQVGPAQY 54 (167)
Q Consensus 28 GeySLqIsnVqlsDeG~Y~CQV~~~~~ 54 (167)
...+|.|+.+.++|.|.|+|++.+..+
T Consensus 181 ~d~~li~~~arlsd~~nytc~a~ni~~ 207 (909)
T KOG1480|consen 181 SDHNLIISQARLSDSGNYTCEATNIVA 207 (909)
T ss_pred hcCCccccchhhhhcccceeeeehhhc
Confidence 345899999999999999999998764
No 204
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=52.84 E-value=29 Score=25.11 Aligned_cols=12 Identities=25% Similarity=0.584 Sum_probs=10.0
Q ss_pred CCeeEEEEeecC
Q psy7729 42 DAEFQCQVGPAQ 53 (167)
Q Consensus 42 eG~Y~CQV~~~~ 53 (167)
...|.|+|.+..
T Consensus 76 ~~~ytC~V~H~~ 87 (95)
T cd04985 76 KESFYCKVEHPS 87 (95)
T ss_pred CCcEEEEEEeCC
Confidence 667999999974
No 205
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=51.26 E-value=22 Score=33.72 Aligned_cols=36 Identities=11% Similarity=0.174 Sum_probs=28.7
Q ss_pred CCeEEeecC----CCCeeeEEEeecccCCCCeeEEEEeec
Q psy7729 17 PSYMRVGDS----SHGVYNLRIRNVSLTDDAEFQCQVGPA 52 (167)
Q Consensus 17 ~Rysl~Gn~----s~GeySLqIsnVqlsDeG~Y~CQV~~~ 52 (167)
.-|++.+-+ .-..-+|+|.+|...-.|-|.|++...
T Consensus 329 ~~~~i~~~~~~s~dlk~STLTIkka~I~N~GCY~~~a~~g 368 (500)
T PHA02914 329 DDFMISAHANYSDDLKNSTLTIKKAHINNAGCYEAQAFMG 368 (500)
T ss_pred CceEEEEecccccchhhceEEeeeEEEEcCCceEEEEecC
Confidence 567777642 234568999999999999999999765
No 206
>COG3536 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.68 E-value=20 Score=28.28 Aligned_cols=40 Identities=18% Similarity=0.171 Sum_probs=25.3
Q ss_pred CCCCCCCCCeEEeecCCCCeeeEEEeecccCCCCeeEEEE
Q psy7729 10 NSIIPGFPSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQV 49 (167)
Q Consensus 10 ~~~lpg~~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV 49 (167)
....++-.-+.|.+....|+|-++|.=-.--|+|+|+-..
T Consensus 51 ~v~v~gkr~V~i~~i~p~GnYavri~FdDgHDsGiy~W~Y 90 (120)
T COG3536 51 RVLVPGKRNVQIRDIEPVGNYAVRILFDDGHDSGIYTWAY 90 (120)
T ss_pred ceeeeccccceEEEeEecCceEEEEEecCCcccCcccHHH
Confidence 3333444445555555667788888777777888776543
No 207
>KOG3515|consensus
Probab=50.08 E-value=16 Score=36.54 Aligned_cols=50 Identities=12% Similarity=0.159 Sum_probs=34.4
Q ss_pred eeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEecCCccccccccc
Q psy7729 29 VYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVILPQAISASETLE 79 (167)
Q Consensus 29 eySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVLVPPSip~~~~~g 79 (167)
.-.|+|..+...|.|.|+|++.+.-. ........+++.+++....+.+.+
T Consensus 162 ~s~l~~~v~Rka~~g~~tC~A~nr~s-~~l~~~~~~~i~v~~~~~~~~~~~ 211 (741)
T KOG3515|consen 162 PSLLKQTVSRKADNGNYTCPANNRNS-PGLSFAKQLTIIVEAPCKGIGITG 211 (741)
T ss_pred ccceeeEEEEecCCceeEcccccccC-ccccccceeEeecccccccceecc
Confidence 34688999999999999999998521 123356677777765555554443
No 208
>PF11327 DUF3129: Protein of unknown function (DUF3129); InterPro: IPR021476 This eukaryotic family of proteins has no known function.
Probab=46.88 E-value=48 Score=27.37 Aligned_cols=30 Identities=17% Similarity=0.387 Sum_probs=24.7
Q ss_pred CCCeeeEEEeecccCCCCeeEEEEeecCCC
Q psy7729 26 SHGVYNLRIRNVSLTDDAEFQCQVGPAQYH 55 (167)
Q Consensus 26 s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~ 55 (167)
..|..+++|+.|...=+|-|+|.|......
T Consensus 89 ~gG~i~mt~hQVN~DGaGP~~C~iD~tg~g 118 (184)
T PF11327_consen 89 AGGSISMTIHQVNADGAGPFTCDIDETGTG 118 (184)
T ss_pred CCCEEEEEEEEecCCCCcCeEEEECCCCCc
Confidence 468888999999976699999999887643
No 209
>PHA03189 UL14 tegument protein; Provisional
Probab=45.47 E-value=36 Score=31.11 Aligned_cols=47 Identities=9% Similarity=0.159 Sum_probs=30.6
Q ss_pred CCeeeEEEeecccCCCCeeEEEEeecCCCCCee-e----eEEEEEecCCcccccc
Q psy7729 27 HGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIR-A----NARLTVILPQAISASE 76 (167)
Q Consensus 27 ~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~is-s----~a~LtVLVPPSip~~~ 76 (167)
...++|++ +|+.+-+|+|.|.+.+.. +++- . .++|.-|--|.-|.|+
T Consensus 131 aq~ltLtF-~v~t~taG~Y~CvLrN~t--Hglv~~rf~ivtdvetL~rpD~p~Cd 182 (348)
T PHA03189 131 AQRLTLTF-RVSTSTAGMYECVLRNET--HGLVLQRFVIVTDVETLRRPDEPCCD 182 (348)
T ss_pred eeEEEEEE-EEEecccceEEEEecccc--ceeeeEEeeeeeehhhhcCCCCCCcC
Confidence 34566766 677788999999998863 2322 1 2333335588887776
No 210
>PHA03289 envelope glycoprotein I; Provisional
Probab=44.78 E-value=36 Score=31.21 Aligned_cols=43 Identities=16% Similarity=0.077 Sum_probs=32.0
Q ss_pred CeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEecCCcc
Q psy7729 28 GVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVILPQAI 72 (167)
Q Consensus 28 GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVLVPPSi 72 (167)
...-|+|++....|+|.|.=.|+....+ .+....|.|+|-++.
T Consensus 120 ~gvLL~I~~Pr~~DSGiYyLRV~Ldga~--~sDvF~lsv~Vy~~~ 162 (352)
T PHA03289 120 KGLLLTIIEPRMSDTGIYYIRVSLAGRN--KSDIFRTSVFVCSSS 162 (352)
T ss_pred CceEEEeCCCCcccCeeEEEEEEeCCCc--cCceEEEEEEEEeCC
Confidence 3468999999999999999999998542 234556667664443
No 211
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=44.58 E-value=64 Score=24.04 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=18.7
Q ss_pred cccCCCCe-eEEEEeecCCCCCeeeeEEEEE
Q psy7729 37 VSLTDDAE-FQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 37 VqlsDeG~-Y~CQV~~~~~~~~iss~a~LtV 66 (167)
.+..|+|. ++|+|.+.....+++....|.|
T Consensus 67 p~r~d~G~~vtC~V~H~al~~~~~~~~~L~V 97 (97)
T cd07704 67 PSRHANGHPLTCVVSHPALQQDFRITHILNV 97 (97)
T ss_pred eCHHHCCcEEEEEEeCcccCCCceeeEEeeC
Confidence 35555555 9999999754334445555554
No 212
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=44.51 E-value=51 Score=24.51 Aligned_cols=40 Identities=23% Similarity=0.230 Sum_probs=26.4
Q ss_pred CeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEecCCc
Q psy7729 28 GVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVILPQA 71 (167)
Q Consensus 28 GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVLVPPS 71 (167)
+=..++|+||+. +..-.|.++=.+. -....+.|+|+-||.
T Consensus 51 ~W~~f~LsnV~~--ds~~~C~~~C~g~--Q~~~~~~ItVY~~Pe 90 (91)
T PF03921_consen 51 QWKAFQLSNVTE--DSSPLCFFNCSGE--QSSASANITVYKPPE 90 (91)
T ss_dssp TEEEEEEEEE-S--CEEEEEEEEETTE--EEEEEEEEEEEB--S
T ss_pred cEEEEEEEcccc--CCeEEEEEEcCCe--EEEeEEeeEEeCCCC
Confidence 445677899996 4677899988632 133688999998985
No 213
>PHA03240 envelope glycoprotein M; Provisional
Probab=43.64 E-value=20 Score=31.41 Aligned_cols=39 Identities=23% Similarity=0.266 Sum_probs=25.9
Q ss_pred CeeeEEEeecccCCCCeeEEEEeecCCC--CCeeeeEEEEE
Q psy7729 28 GVYNLRIRNVSLTDDAEFQCQVGPAQYH--KPIRANARLTV 66 (167)
Q Consensus 28 GeySLqIsnVqlsDeG~Y~CQV~~~~~~--~~iss~a~LtV 66 (167)
.+++|.|.+|.++|.|.|+-.-....+. .|..+=.+|+|
T Consensus 103 ~NstL~i~~vn~sd~~nYcr~k~~~~g~~e~pt~sC~~l~~ 143 (258)
T PHA03240 103 HNSTLIIAHLNLSDAGEYCRKKCPPKGDCEFPTMSCFRLIL 143 (258)
T ss_pred ccceEEEEEEeecCcchhhhccCCCCCCcCCCcceeeeEee
Confidence 4689999999999999997555443322 12223445555
No 214
>PHA03283 envelope glycoprotein E; Provisional
Probab=42.89 E-value=23 Score=34.26 Aligned_cols=27 Identities=7% Similarity=0.039 Sum_probs=24.2
Q ss_pred CCeeeEEEeecccCCCCeeEEEEeecC
Q psy7729 27 HGVYNLRIRNVSLTDDAEFQCQVGPAQ 53 (167)
Q Consensus 27 ~GeySLqIsnVqlsDeG~Y~CQV~~~~ 53 (167)
.+..+|++.|++.+++|.|.|.+..++
T Consensus 312 ~~~v~L~f~nap~~~SGLYVfVv~yNg 338 (542)
T PHA03283 312 QNRVDLLFKNAPASASGLYVFVLLYNG 338 (542)
T ss_pred CCCcceEeccCCcccCceEEEEEEECC
Confidence 456899999999999999999998874
No 215
>KOG4597|consensus
Probab=42.68 E-value=29 Score=33.53 Aligned_cols=39 Identities=15% Similarity=0.121 Sum_probs=30.4
Q ss_pred CCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEE
Q psy7729 26 SHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66 (167)
Q Consensus 26 s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtV 66 (167)
.++...|.|=|....|+|.|+|.+-...+ ..+..+.|.|
T Consensus 253 vtstcql~ic~ewq~~a~w~tCs~rcg~g--~~~rdv~c~s 291 (560)
T KOG4597|consen 253 VTSTCQLVICNEWQADAGWYTCSARCGAG--FLRRDVPCSS 291 (560)
T ss_pred eeeeeeEEEcchhhcCCCceeeccccccc--eeeccceeee
Confidence 46778999999999999999999988754 1334555555
No 216
>cd01289 FabA_like Domain of unknown function, appears to be related to a diverse group of beta-hydroxydecanoyl ACP dehydratases (FabA) and beta-hydroxyacyl ACP dehydratases (FabZ). This group appears to lack the conserved active site histidine of FabA and FabZ.
Probab=41.79 E-value=61 Score=24.77 Aligned_cols=51 Identities=18% Similarity=0.263 Sum_probs=28.2
Q ss_pred CCeEEeecC-C-CCeeeEEEeeccc--CCCCeeEEEEeecCCCCCeeeeEEEEEecCC
Q psy7729 17 PSYMRVGDS-S-HGVYNLRIRNVSL--TDDAEFQCQVGPAQYHKPIRANARLTVILPQ 70 (167)
Q Consensus 17 ~Rysl~Gn~-s-~GeySLqIsnVql--sDeG~Y~CQV~~~~~~~~iss~a~LtVLVPP 70 (167)
.++.+.... . .....+++.-+.. +.-+.|.|.+.... ...+.+.|+|++|.
T Consensus 84 ~~~~f~~~v~p~Gd~l~i~~~~~~~~~~~~~~~~~~~~v~~---~~va~a~l~~~~p~ 138 (138)
T cd01289 84 RKYEAHVDRFDLGSTLLIVVAELLQGDSGLGVFECTIEDQG---GVLASGRLNVYQPA 138 (138)
T ss_pred EEEEEEcceeCCCCeeEEEeeeeeeCCCcEEEEEEEEEECC---EEEEEEEEEEEcCC
Confidence 355555442 2 3333443343333 24566778777642 14478999998873
No 217
>COG5475 Uncharacterized small protein [Function unknown]
Probab=40.86 E-value=38 Score=23.78 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=17.2
Q ss_pred CeeeEEEeecccCCCCeeEEEEeecCC
Q psy7729 28 GVYNLRIRNVSLTDDAEFQCQVGPAQY 54 (167)
Q Consensus 28 GeySLqIsnVqlsDeG~Y~CQV~~~~~ 54 (167)
|.-.++|+.++.. |.|.|.+....+
T Consensus 16 GGP~Mtvs~~ss~--Gmy~C~Wf~g~g 40 (60)
T COG5475 16 GGPRMTVSGYSSD--GMYECRWFDGYG 40 (60)
T ss_pred CCceEEEeccccC--CeEEEEEecCCC
Confidence 3345556555544 999999998754
No 218
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=38.75 E-value=64 Score=29.46 Aligned_cols=33 Identities=12% Similarity=0.069 Sum_probs=21.4
Q ss_pred EeecCCCCeeeEEEeecccC-CCCeeEEEEeecC
Q psy7729 21 RVGDSSHGVYNLRIRNVSLT-DDAEFQCQVGPAQ 53 (167)
Q Consensus 21 l~Gn~s~GeySLqIsnVqls-DeG~Y~CQV~~~~ 53 (167)
++.|...|+|.++..=+... |...|+|.|.+++
T Consensus 271 ~~pn~DggTfQ~~~~v~v~~~~~~~Y~C~V~Hsg 304 (338)
T PHA02865 271 TKKDNDKNTFSSTPSVRVPTDMSNQIVCVVFHST 304 (338)
T ss_pred eeeCCCCCeeEEEEEEEeCCCCCCCcEEEEEeCC
Confidence 34443335777776655444 5567999999974
No 219
>PRK11530 hypothetical protein; Provisional
Probab=38.66 E-value=45 Score=28.10 Aligned_cols=19 Identities=11% Similarity=0.324 Sum_probs=16.1
Q ss_pred CCCeeeEEEeecccCCCCe
Q psy7729 26 SHGVYNLRIRNVSLTDDAE 44 (167)
Q Consensus 26 s~GeySLqIsnVqlsDeG~ 44 (167)
.-|..+|.|+||...++|+
T Consensus 79 qiG~LrlsLs~i~~~anGT 97 (183)
T PRK11530 79 QIGTLRMSLSNITPEANGT 97 (183)
T ss_pred ccceEEEEEecCcccCCCc
Confidence 4588899999999999994
No 220
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=36.85 E-value=56 Score=25.52 Aligned_cols=51 Identities=10% Similarity=0.034 Sum_probs=30.3
Q ss_pred eEEEeecccC---CCCeeEEEEeecCCCCCeeeeEEEEEecCCccccccccccc
Q psy7729 31 NLRIRNVSLT---DDAEFQCQVGPAQYHKPIRANARLTVILPQAISASETLENN 81 (167)
Q Consensus 31 SLqIsnVqls---DeG~Y~CQV~~~~~~~~iss~a~LtVLVPPSip~~~~~g~~ 81 (167)
.|+|.....- ++|.|.|.+.....+.|.+...++.+.-.+.-..+.+.|.+
T Consensus 72 ~l~v~~~e~w~~~~~g~~~g~~~~~~~G~P~~~~G~~~L~~~~~gt~~~~~g~v 125 (159)
T PF10698_consen 72 DLRVTRTETWTPLDDGRRTGTFTVSIPGAPVSISGTMRLRPDGGGTRLTVEGEV 125 (159)
T ss_pred CeEEEEEEEEecCCCCeEEEEEEEEecCceEEEEEEEEEecCCCCEEEEEEEEE
Confidence 4666665544 78999999988765444555555555444444444444433
No 221
>PHA02894 hypothetical protein; Provisional
Probab=35.59 E-value=22 Score=26.97 Aligned_cols=30 Identities=17% Similarity=0.126 Sum_probs=22.0
Q ss_pred cccCCCCCCCCCCCeEEeecCCCCeeeEEEeec
Q psy7729 5 SAYGFNSIIPGFPSYMRVGDSSHGVYNLRIRNV 37 (167)
Q Consensus 5 ~~LG~~~~lpg~~Rysl~Gn~s~GeySLqIsnV 37 (167)
|.||....+..+.||+++.+.. -+.||+.+
T Consensus 23 f~i~~~k~~cvc~ryslips~~---envq~s~i 52 (97)
T PHA02894 23 FTIGDKKPICVCNRYSLIPSKK---ENVQISRI 52 (97)
T ss_pred EEecCCCeEEEEeeeeeccCCC---CceEEEEE
Confidence 6778888888889999997633 36666544
No 222
>smart00112 CA Cadherin repeats. Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium.
Probab=34.90 E-value=1.3e+02 Score=19.72 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=20.2
Q ss_pred ecccCCCCeeEEEEeecCCC-CCeeeeEEEEEec
Q psy7729 36 NVSLTDDAEFQCQVGPAQYH-KPIRANARLTVIL 68 (167)
Q Consensus 36 nVqlsDeG~Y~CQV~~~~~~-~~iss~a~LtVLV 68 (167)
.+.......|...|.....+ ++.++.+.|+|.|
T Consensus 38 ~LD~e~~~~y~l~v~a~D~~~~~~~~~~~v~I~V 71 (79)
T smart00112 38 PLDREEQPEYTLTVEATDGGGPPLSSTATVTVTV 71 (79)
T ss_pred ccCeeCCCeEEEEEEEEECCCCCcccEEEEEEEE
Confidence 44555667899998776533 2244566666654
No 223
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=34.77 E-value=13 Score=34.60 Aligned_cols=26 Identities=19% Similarity=0.135 Sum_probs=0.0
Q ss_pred CeeeEEEeecccCCCCeeEEEEeecC
Q psy7729 28 GVYNLRIRNVSLTDDAEFQCQVGPAQ 53 (167)
Q Consensus 28 GeySLqIsnVqlsDeG~Y~CQV~~~~ 53 (167)
..-.|+|.+++.+|+|.|+=.+.+..
T Consensus 87 ~~~~l~i~~a~~~~~GvY~l~~~~~~ 112 (439)
T PF02480_consen 87 NKGGLSILNATEQDSGVYTLYVRNDS 112 (439)
T ss_dssp --------------------------
T ss_pred cCCceEEeccccccCeeEEEEecCCC
Confidence 33579999999999999999987654
No 224
>PHA03291 envelope glycoprotein I; Provisional
Probab=33.77 E-value=79 Score=29.51 Aligned_cols=28 Identities=14% Similarity=-0.079 Sum_probs=24.6
Q ss_pred CCeeeEEEeecccCCCCeeEEEEeecCC
Q psy7729 27 HGVYNLRIRNVSLTDDAEFQCQVGPAQY 54 (167)
Q Consensus 27 ~GeySLqIsnVqlsDeG~Y~CQV~~~~~ 54 (167)
..+.-|+|++....|+|.|.=.|+....
T Consensus 126 e~~vLL~i~~P~~~DsGiYvLRV~vdga 153 (401)
T PHA03291 126 ARQPLLRARGAARAVVGLYVLRVWVEGA 153 (401)
T ss_pred ccceEEEecCCCcccceeEEEEEEeCCC
Confidence 3567899999999999999999999753
No 225
>PHA03283 envelope glycoprotein E; Provisional
Probab=32.43 E-value=1e+02 Score=29.91 Aligned_cols=47 Identities=11% Similarity=-0.007 Sum_probs=31.4
Q ss_pred CCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEec
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVIL 68 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVLV 68 (167)
+.|-+++. ..-.|+|.|++..++|.|+=...+..+ ...+...|+|.-
T Consensus 124 tv~pilt~---~~~~l~I~~at~~~aGVYtly~r~d~~--~~~~vflvtVk~ 170 (542)
T PHA03283 124 TVFPILTP---ERSVLQIQRATPNIAGVYTLHVSSDGM--MKHSVFFVTVKK 170 (542)
T ss_pred ceeeeecC---CCCeeEEEecccccCeEEEEEecCCCc--eEEEEEEEEecC
Confidence 34445443 235899999999999999988887532 122455566654
No 226
>PHA03281 envelope glycoprotein E; Provisional
Probab=31.41 E-value=43 Score=32.84 Aligned_cols=27 Identities=7% Similarity=0.015 Sum_probs=24.0
Q ss_pred CCeeeEEEeecccCCCCeeEEEEeecC
Q psy7729 27 HGVYNLRIRNVSLTDDAEFQCQVGPAQ 53 (167)
Q Consensus 27 ~GeySLqIsnVqlsDeG~Y~CQV~~~~ 53 (167)
.+..+|++.|++.+++|.|.|.+...+
T Consensus 472 ~n~vdL~F~nApasaSGLYVfVl~yNG 498 (642)
T PHA03281 472 DGGSALKFVDAAESLSGLYVFIIHFNG 498 (642)
T ss_pred CCCcceEeccCCcccCceEEEEEEECC
Confidence 456789999999999999999998875
No 227
>PF09315 DUF1973: Domain of unknown function (DUF1973); InterPro: IPR015394 These functionally uncharacterised domains are found in various eukaryotic calcium-dependent chloride channels.
Probab=31.38 E-value=1.1e+02 Score=25.01 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=20.0
Q ss_pred CeEEeecCCCCeeeEEEeecccCCCCeeEEEEeec
Q psy7729 18 SYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPA 52 (167)
Q Consensus 18 Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~ 52 (167)
|+++.|.+..|.|++.|.|.+.+.. .-.+.|...
T Consensus 68 ~i~ipg~ae~G~W~y~i~~~~~~~q-~v~vtVtS~ 101 (179)
T PF09315_consen 68 RIQIPGTAEVGTWTYSITNTSSSSQ-TVTVTVTSR 101 (179)
T ss_pred EEECCCCcccccEEEEEecCCCCcc-eEEEEEEee
Confidence 4455555567888888876665532 245555544
No 228
>TIGR01749 fabA beta-hydroxyacyl-[acyl carrier protein] dehydratase FabA. This enzyme, FabA, shows overlapping substrate specificity with FabZ with regard to chain length in fatty acid biosynthesis. It is commonly designated 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) as if it were specific for that chain length, but its specificity is broader; it is active even in the initiation of fatty acid biosynthesis. This enzyme can also isomerize trans-2-decenoyl-ACP to cis-3-decenoyl-ACP to bypass reduction by FabI and instead allow biosynthesis of unsaturated fatty acids. FabA cannot elongate unsaturated fatty acids.
Probab=30.98 E-value=84 Score=25.39 Aligned_cols=54 Identities=11% Similarity=0.020 Sum_probs=32.3
Q ss_pred CCeEEeecCCCC----eeeEEEeecccC--CCCeeEEEEeecCCCCCee--eeEEEEEecCCcc
Q psy7729 17 PSYMRVGDSSHG----VYNLRIRNVSLT--DDAEFQCQVGPAQYHKPIR--ANARLTVILPQAI 72 (167)
Q Consensus 17 ~Rysl~Gn~s~G----eySLqIsnVqls--DeG~Y~CQV~~~~~~~~is--s~a~LtVLVPPSi 72 (167)
.++.+.+....+ .+.++|..+... -.+.+.|.+..... .+. ..+.|.|+.|++.
T Consensus 107 ~~~kfr~~v~Pgd~~~~l~v~i~~~~~~~~~~~~~~~~i~v~g~--~va~a~~~~~~~~~~~~~ 168 (169)
T TIGR01749 107 GEVKFTGQVLPTAKKVTYRIHFKRVINRRLVMGIADGEVLVDGR--LIYTASDLRVGLFTSTSA 168 (169)
T ss_pred cEEEEccCEecCCeEEEEEEEEEEEeecCCcEEEEEEEEEECCE--EEEEEECCEEEEecCCCC
Confidence 345555443333 455555555333 35789999987642 222 3689999998873
No 229
>PF15096 G6B: G6B family
Probab=30.38 E-value=40 Score=29.00 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=18.6
Q ss_pred cccCCCCeeEEEEeecCCCCCeeeeEEEEEec
Q psy7729 37 VSLTDDAEFQCQVGPAQYHKPIRANARLTVIL 68 (167)
Q Consensus 37 VqlsDeG~Y~CQV~~~~~~~~iss~a~LtVLV 68 (167)
++..|+|+|.|.-... ..+++.|+||-
T Consensus 81 Ls~GDSGTFfCkGr~e-----~ESRT~LhVLG 107 (224)
T PF15096_consen 81 LSAGDSGTFFCKGRQE-----EESRTVLHVLG 107 (224)
T ss_pred hhcCCccceEecCccc-----ccceeeeeeec
Confidence 4557999999983222 23678888874
No 230
>PF10651 DUF2479: Domain of unknown function (DUF2479); InterPro: IPR018913 This domain is found in phage from a number of different bacteria including (Listeria phage A118 (Bacteriophage A118)). It is thought to be a putative long tail fibre protein.; PDB: 4DIV_L 3UH8_A.
Probab=29.80 E-value=69 Score=25.39 Aligned_cols=30 Identities=13% Similarity=0.167 Sum_probs=24.7
Q ss_pred cCCCCeeeEEEeecccCCCCeeEEEEeecC
Q psy7729 24 DSSHGVYNLRIRNVSLTDDAEFQCQVGPAQ 53 (167)
Q Consensus 24 n~s~GeySLqIsnVqlsDeG~Y~CQV~~~~ 53 (167)
++..|.+.+.|.+-.++-.|.|.|++....
T Consensus 78 d~~~G~i~y~lp~~~l~~~G~v~a~~~i~~ 107 (170)
T PF10651_consen 78 DPTNGIIQYTLPDEFLKHVGKVKAQLFIYY 107 (170)
T ss_dssp ETTTTEEEEE--TTTTHSSEEEEEEEEEEE
T ss_pred cCcCcEEEEEECHHHhccCcEEEEEEEEEE
Confidence 457899999999999999999999998765
No 231
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=29.43 E-value=1.7e+02 Score=21.01 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=14.9
Q ss_pred eEEEeecccCCCCeeEEEEeec
Q psy7729 31 NLRIRNVSLTDDAEFQCQVGPA 52 (167)
Q Consensus 31 SLqIsnVqlsDeG~Y~CQV~~~ 52 (167)
.|.+++|.....|.|...+...
T Consensus 33 ~~~~~~Vd~~~~g~y~~~~~~a 54 (125)
T PF03422_consen 33 WIEYNNVDVPEAGTYTLTIRYA 54 (125)
T ss_dssp EEEEEEEEESSSEEEEEEEEEE
T ss_pred EEEEEEEeeCCCceEEEEEEEE
Confidence 4777777777777776665443
No 232
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=29.19 E-value=57 Score=22.99 Aligned_cols=21 Identities=14% Similarity=0.214 Sum_probs=15.7
Q ss_pred eEEEeecccCCCCeeEEEEeec
Q psy7729 31 NLRIRNVSLTDDAEFQCQVGPA 52 (167)
Q Consensus 31 SLqIsnVqlsDeG~Y~CQV~~~ 52 (167)
.|.+.+-. +++|.|+|.+...
T Consensus 36 ~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 36 KYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred eEEeeccC-CCCceEEEEeCCC
Confidence 44455666 9999999999643
No 233
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=28.45 E-value=2e+02 Score=19.79 Aligned_cols=27 Identities=15% Similarity=0.290 Sum_probs=19.0
Q ss_pred cccCCCCeeEEEEeecCCCCCeeeeEEEEEec
Q psy7729 37 VSLTDDAEFQCQVGPAQYHKPIRANARLTVIL 68 (167)
Q Consensus 37 VqlsDeG~Y~CQV~~~~~~~~iss~a~LtVLV 68 (167)
+...++|+|.|.+..... -..+|.|++
T Consensus 64 v~~~~~G~y~v~y~p~~~-----G~y~i~V~~ 90 (101)
T PF00630_consen 64 VIDNGDGTYTVSYTPTEP-----GKYKISVKI 90 (101)
T ss_dssp EEEESSSEEEEEEEESSS-----EEEEEEEEE
T ss_pred EEECCCCEEEEEEEeCcc-----EeEEEEEEE
Confidence 556688999999988642 356666654
No 234
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=27.54 E-value=89 Score=23.25 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=18.5
Q ss_pred eeeEEEeecccCCCC-eeEEEEeecCC
Q psy7729 29 VYNLRIRNVSLTDDA-EFQCQVGPAQY 54 (167)
Q Consensus 29 eySLqIsnVqlsDeG-~Y~CQV~~~~~ 54 (167)
..+|+|. +...|+| .|.|++..+-.
T Consensus 61 ~stlt~~-~~r~D~g~~~sC~A~l~l~ 86 (100)
T cd05755 61 PATITIT-VDREDHGANFSCETELDLR 86 (100)
T ss_pred EEEEEEe-cchhhCCcEEEEEEEeccC
Confidence 4566663 6678888 69999988754
No 235
>PRK02693 apocytochrome f; Reviewed
Probab=26.58 E-value=1.1e+02 Score=27.84 Aligned_cols=24 Identities=8% Similarity=0.147 Sum_probs=19.1
Q ss_pred eEEEeecccCCCCeeEEEEeecCC
Q psy7729 31 NLRIRNVSLTDDAEFQCQVGPAQY 54 (167)
Q Consensus 31 SLqIsnVqlsDeG~Y~CQV~~~~~ 54 (167)
+=+|+.+...+.|.|.-.+.+..+
T Consensus 204 ~G~i~~I~~~e~Gg~~vtI~~~dG 227 (312)
T PRK02693 204 AGTITSIETGEDGGYVVTITTEDG 227 (312)
T ss_pred CcEEEEEEecCCCceEEEEEcCCC
Confidence 447889999999999999976543
No 236
>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here
Probab=26.37 E-value=2.7e+02 Score=21.01 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=19.5
Q ss_pred cccCCCCeeEEEEeecCCCCCe-eeeEEEEEec
Q psy7729 37 VSLTDDAEFQCQVGPAQYHKPI-RANARLTVIL 68 (167)
Q Consensus 37 VqlsDeG~Y~CQV~~~~~~~~i-ss~a~LtVLV 68 (167)
+.....+.|.+.|.....+.+. +..+.|+|.|
T Consensus 60 lD~e~~~~~~l~v~a~D~g~~~~~~~~~v~I~V 92 (199)
T cd00031 60 LDREEQSEYTLTVVASDGGGPPLSSTATVTVTV 92 (199)
T ss_pred CCCcCCceEEEEEEEEECCcCcceeEEEEEEEE
Confidence 5567778999999886532232 2444555544
No 237
>PHA03286 envelope glycoprotein E; Provisional
Probab=25.45 E-value=1.8e+02 Score=27.96 Aligned_cols=37 Identities=14% Similarity=-0.005 Sum_probs=26.6
Q ss_pred eeEEEeecccCCCCeeEEEEeecCCCCCeeeeEEEEEe
Q psy7729 30 YNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVI 67 (167)
Q Consensus 30 ySLqIsnVqlsDeG~Y~CQV~~~~~~~~iss~a~LtVL 67 (167)
-.|+|.|++..++|.|+=...+..+ ....+..-|+|.
T Consensus 127 ~~L~I~nAt~qnaGiYtly~rnd~~-~~~~~vflVtV~ 163 (492)
T PHA03286 127 KELTILNASSQNAGIYIRYSRNGTR-TAVMDVLVVWVS 163 (492)
T ss_pred CceEEeeccccccceEEEEEcCCCC-cEEEEEEEEEEe
Confidence 4799999999999999988876532 212245566663
No 238
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=24.88 E-value=2.2e+02 Score=22.07 Aligned_cols=36 Identities=11% Similarity=0.049 Sum_probs=25.9
Q ss_pred CeEEeecC---CCCeeeEEEeecccCCC-CeeEEEEeecC
Q psy7729 18 SYMRVGDS---SHGVYNLRIRNVSLTDD-AEFQCQVGPAQ 53 (167)
Q Consensus 18 Rysl~Gn~---s~GeySLqIsnVqlsDe-G~Y~CQV~~~~ 53 (167)
.+++..+. ....+++.|++|..-+. |+|++.+...+
T Consensus 90 ~i~I~f~~PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~p 129 (146)
T PF10989_consen 90 TITITFDEPVPPGTTVTVVLSPVRNPRSGGTYQFNVTAFP 129 (146)
T ss_pred EEEEEeCCCCCCCCEEEEEEEeeeCCCCCCeEEEEEEEEC
Confidence 44444432 46889999999966555 99999887765
No 239
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=24.81 E-value=88 Score=23.44 Aligned_cols=28 Identities=21% Similarity=0.090 Sum_probs=17.1
Q ss_pred CCCCeeEEEEeecCCCCCeeeeEEEEEe
Q psy7729 40 TDDAEFQCQVGPAQYHKPIRANARLTVI 67 (167)
Q Consensus 40 sDeG~Y~CQV~~~~~~~~iss~a~LtVL 67 (167)
..-|+|.|++..+....+-..++.|+|-
T Consensus 25 rhRGF~vcamnmt~~~da~~~nie~tV~ 52 (86)
T COG3978 25 RHRGFRVCAMNMTAAVDAGNANIELTVD 52 (86)
T ss_pred hhcCeEEEEeecccccccccceEEEEEc
Confidence 3679999999877532112245555553
No 240
>KOG4532|consensus
Probab=23.65 E-value=97 Score=28.27 Aligned_cols=32 Identities=13% Similarity=0.099 Sum_probs=24.0
Q ss_pred CeEEeecCCCCeeeEEEeecccCCCCeeEEEEeec
Q psy7729 18 SYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPA 52 (167)
Q Consensus 18 Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~ 52 (167)
||+|- ..+.|.++|.-+..+|.|+|.-.-.+.
T Consensus 184 ~y~id---~~sey~~~~~~a~t~D~gF~~S~s~~~ 215 (344)
T KOG4532|consen 184 RYAID---DESEYIENIYEAPTSDHGFYNSFSEND 215 (344)
T ss_pred EEEeC---CccceeeeeEecccCCCceeeeeccCc
Confidence 44444 568999999999999999887544443
No 241
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=23.49 E-value=78 Score=23.26 Aligned_cols=37 Identities=11% Similarity=0.254 Sum_probs=22.9
Q ss_pred CCCCCCeEEeecCCCCeeeEEEeecccCCCCeeEEEEee
Q psy7729 13 IPGFPSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGP 51 (167)
Q Consensus 13 lpg~~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~ 51 (167)
.|.-.+++|+|+++. |+.....+...++|++.|.|-.
T Consensus 13 AP~A~~V~l~GdFn~--W~~~~~~m~k~~~G~W~~~i~~ 49 (99)
T cd02854 13 APNAEEVYLIGDFNN--WDRNAHPLKKDEFGVWEITIPP 49 (99)
T ss_pred CCCCCEEEEEccCCC--CCCcCcccEECCCCEEEEEECC
Confidence 345567888887643 3333233444578999888865
No 242
>PF08670 MEKHLA: MEKHLA domain; InterPro: IPR013978 The MEKHLA domain shares similarity with the PAS domain and is found in the 3' end of plant HD-ZIP III homeobox genes, and bacterial proteins.
Probab=23.27 E-value=59 Score=26.15 Aligned_cols=13 Identities=15% Similarity=0.210 Sum_probs=10.7
Q ss_pred CCCCeeEEEEeec
Q psy7729 40 TDDAEFQCQVGPA 52 (167)
Q Consensus 40 sDeG~Y~CQV~~~ 52 (167)
.++|.|+||+...
T Consensus 130 D~~g~~~GqAa~F 142 (148)
T PF08670_consen 130 DEDGNYCGQAAMF 142 (148)
T ss_pred cCCCCEEEEEEEE
Confidence 4779999999764
No 243
>PF01483 P_proprotein: Proprotein convertase P-domain; InterPro: IPR002884 This domain, termed the P domain is approximately 150 amino acids in length and C-terminal to a serine endopeptidase domain which belong to MEROPS peptidase family S8 (clan SB), subfamily S8B (kexin). The domain is primarily associated with the calcium-dependent serine endopeptidases, kex2/subtilisin proprotein convertases (PCs), which have been identified in all eukaryotes [] and in the gammaproteobacteria, Nostoc (cyanobacteria) and in Streptomyces avermitilis. The P domain appears necessary for folding and maintaining the endopeptidase catalytic domain and to regulate its calcium and acidic pH dependence. In addition, contained within the middle of the P domain in most PC family members is the cognate integrin binding RGD sequence [], which may be required for intracellular compartmentalization and maintenance of enzyme stability within the ER. The integrity of the RGD sequence of proprotein convertase PC1 is critical for its zymogen and C-terminal processing and for its cellular trafficking [, ]. The carboxy-terminal tail provides uniqueness to each PC family member being the least conserved region of all convertases [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1P8J_E 1OT5_B 2ID4_A 1R64_A 3HJR_A.
Probab=22.30 E-value=39 Score=23.56 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=13.6
Q ss_pred ecCCCCeeeEEEee-cccCCCCe
Q psy7729 23 GDSSHGVYNLRIRN-VSLTDDAE 44 (167)
Q Consensus 23 Gn~s~GeySLqIsn-VqlsDeG~ 44 (167)
|-...|+|.|+|.+ ....|.|.
T Consensus 57 Ge~~~G~W~L~v~D~~~~~~~G~ 79 (87)
T PF01483_consen 57 GESANGTWTLRVTDRNSPGDTGT 79 (87)
T ss_dssp T-B--EEEEEEEEEBSSTTS-EE
T ss_pred CccCCCEEEEEEEECCCCCCcEE
Confidence 33468999999999 66666663
No 244
>PF14343 PrcB_C: PrcB C-terminal
Probab=22.04 E-value=2.5e+02 Score=18.69 Aligned_cols=30 Identities=20% Similarity=0.357 Sum_probs=20.1
Q ss_pred eecCCCCeeeEEEeecccCCCCeeEEEEeec
Q psy7729 22 VGDSSHGVYNLRIRNVSLTDDAEFQCQVGPA 52 (167)
Q Consensus 22 ~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~ 52 (167)
.|...+|.|+|.|.++... ++.....+...
T Consensus 8 ~G~kptgGY~I~v~~v~~~-~~~i~V~~~~~ 37 (60)
T PF14343_consen 8 YGEKPTGGYSIEVESVEET-ENTIVVYVKLT 37 (60)
T ss_pred eccccCCCEEEEEEEEEEe-CCEEEEEEEEE
Confidence 4555678899999999555 44555555443
No 245
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=22.01 E-value=1.3e+02 Score=22.37 Aligned_cols=11 Identities=27% Similarity=0.637 Sum_probs=8.4
Q ss_pred CeeEEEEeecC
Q psy7729 43 AEFQCQVGPAQ 53 (167)
Q Consensus 43 G~Y~CQV~~~~ 53 (167)
..|+|+|.+..
T Consensus 79 ~~ytC~V~H~~ 89 (99)
T cd04986 79 EPFACTVTHPE 89 (99)
T ss_pred CeEEEEEECCC
Confidence 34999998875
No 246
>CHL00037 petA cytochrome f
Probab=21.06 E-value=1.4e+02 Score=27.21 Aligned_cols=22 Identities=0% Similarity=0.018 Sum_probs=17.5
Q ss_pred eeEEEeecccCCCCeeEEEEee
Q psy7729 30 YNLRIRNVSLTDDAEFQCQVGP 51 (167)
Q Consensus 30 ySLqIsnVqlsDeG~Y~CQV~~ 51 (167)
.+=+|+.+...+.|.|.-.+..
T Consensus 210 ~~G~I~~I~~~ekGg~~vti~~ 231 (320)
T CHL00037 210 AAGIVSKILRKEKGGYEITIVD 231 (320)
T ss_pred cCcEEEEEEEcCCCcEEEEEEe
Confidence 3446999999999999988843
No 247
>PF01537 Herpes_glycop_D: Herpesvirus glycoprotein D/GG/GX domain; InterPro: IPR002896 Herpesviruses are dsDNA viruses with no RNA stage. This entry represents a conserved domain found in several Herpes viruses glycoproteins, including: Glycoprotein-D (gD or gIV), which is common to Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2), as well as Equid herpesvirus 1, Bovine herpesvirus 1 and Meleagrid herpesvirus 1 (MeHV-1). Glycoprotein-D has been found on the viral envelope and the plasma membrane of infected cells. gD immunisation can produce an immune response to bovine herpes virus (BHV-1). This response is stronger than that of the other major glycoproteins gB (gI) and gC (gIII) in BHV-1 [, , , ]. Glycoprotein G (gG), which is one of the seven external glycoproteins of Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) []. In the HHV-2 virus-infected cell, gG-2 is cleaved into a secreted amino-terminal portion (sgG-2) and a carboxy-terminal portion. The latter protein is further O-glycosylated, generating the cell membrane-associated mature gG-2 (mgG-2). The mgG-2 protein has widely been used as a prototype antigen for detection of type-specific antibodies against HHV-2 []. Glycoprotein GX (gX), which was initially identified in Suid herpesvirus 1 (Pseudorabies virus). ; GO: 0016021 integral to membrane; PDB: 3U82_A 1L2G_A 2C3A_B 2C36_A 1JMA_A 3SKU_B.
Probab=21.01 E-value=2.6e+02 Score=21.80 Aligned_cols=36 Identities=19% Similarity=0.318 Sum_probs=25.6
Q ss_pred CCCCeEEeecCCCCeeeEEEeecccCCCCeeEEEEeecC
Q psy7729 15 GFPSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQ 53 (167)
Q Consensus 15 g~~Rysl~Gn~s~GeySLqIsnVqlsDeG~Y~CQV~~~~ 53 (167)
.+..|+++.. ++.-|.|......|+|+|.=.|....
T Consensus 80 ~~~~~a~v~~---d~lgll~~aP~~~~sG~Y~r~i~ig~ 115 (124)
T PF01537_consen 80 GYSSYALVND---DELGLLMAAPARYDSGQYRRVIQIGG 115 (124)
T ss_dssp SSTTTEEE-T---TSSEEEEES--GGG-EEEEEEEEETT
T ss_pred cccceEEEcC---CccceEEEccCccCCceEEEEEEECC
Confidence 3456777743 67789999999999999999999873
No 248
>cd00603 IPT_PCSR IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the macrophage-stimulating receptors and of fibrocystin. Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT_PCSR domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=20.89 E-value=2.5e+02 Score=19.10 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=16.8
Q ss_pred CCCCeEEeecC-CCC--eeeEEEeecccCCCCeeEEEEee
Q psy7729 15 GFPSYMRVGDS-SHG--VYNLRIRNVSLTDDAEFQCQVGP 51 (167)
Q Consensus 15 g~~Rysl~Gn~-s~G--eySLqIsnVqlsDeG~Y~CQV~~ 51 (167)
+..++.+.|.. ..+ ...+.| |.+.|.+..
T Consensus 15 Ggt~vtI~G~~f~~~~~~~~V~i--------g~~~C~~~~ 46 (90)
T cd00603 15 GGTRLTITGSNLGSGSPRVRVTV--------GGVPCKVLN 46 (90)
T ss_pred CCeEEEEEEECCCCCCceEEEEE--------CCEECcEEe
Confidence 45677777754 222 344444 556777765
No 249
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=20.29 E-value=2.6e+02 Score=18.14 Aligned_cols=24 Identities=17% Similarity=0.411 Sum_probs=18.5
Q ss_pred CCCeeeEEEeecccCCCCeeEEEEeec
Q psy7729 26 SHGVYNLRIRNVSLTDDAEFQCQVGPA 52 (167)
Q Consensus 26 s~GeySLqIsnVqlsDeG~Y~CQV~~~ 52 (167)
..|.|++.+... .+|.|.-.|...
T Consensus 10 ~~G~Ws~t~~~~---~dG~y~itv~a~ 33 (54)
T PF13754_consen 10 SDGNWSFTVPAL---ADGTYTITVTAT 33 (54)
T ss_pred CCCcEEEeCCCC---CCccEEEEEEEE
Confidence 568999977533 799998888664
No 250
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=20.27 E-value=1.8e+02 Score=19.53 Aligned_cols=34 Identities=15% Similarity=-0.000 Sum_probs=23.3
Q ss_pred CCeEEeecCCCCeeeEEEeecc-cCCCCeeEEEEee
Q psy7729 17 PSYMRVGDSSHGVYNLRIRNVS-LTDDAEFQCQVGP 51 (167)
Q Consensus 17 ~Rysl~Gn~s~GeySLqIsnVq-lsDeG~Y~CQV~~ 51 (167)
.+..|++..+. .+......++ ..+.|.+.|.+..
T Consensus 23 ~~V~l~~~~~~-~~~~~~~~m~~~~~~G~w~~~~~~ 57 (85)
T PF02922_consen 23 KSVELVLYFNG-SWPAEEYPMTRKDDDGVWEVTVPG 57 (85)
T ss_dssp SEEEEEEETTT-SSEEEEEEEEEECTTTEEEEEEEG
T ss_pred CEEEEEEEeee-cCCCceEEeeecCCCCEEEEEEcC
Confidence 56677665444 4555666666 5789999999884
No 251
>PF11350 DUF3152: Protein of unknown function (DUF3152); InterPro: IPR022603 This entry represents Actinobacteria proteins of unknown function. Some are annotated as membrane proteins, however this cannot be confirmed.
Probab=20.25 E-value=1.6e+02 Score=25.12 Aligned_cols=37 Identities=8% Similarity=-0.139 Sum_probs=24.5
Q ss_pred ccCCCCCCCCCCCeEEeecCCC-CeeeEEEeecccCCC
Q psy7729 6 AYGFNSIIPGFPSYMRVGDSSH-GVYNLRIRNVSLTDD 42 (167)
Q Consensus 6 ~LG~~~~lpg~~Rysl~Gn~s~-GeySLqIsnVqlsDe 42 (167)
.|...+.|+..++++|...... -++.|+|......|.
T Consensus 59 tL~DpRgW~~~g~~~F~rV~~~~~Df~I~Lasp~T~~~ 96 (203)
T PF11350_consen 59 TLADPRGWTADGRVRFQRVDSGAPDFRISLASPGTTDR 96 (203)
T ss_pred HhcCCCCCCcCCCEEEEECCCCCCCEEEEECCcchhhh
Confidence 3666788888888887764333 366666666665564
Done!