RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7729
(167 letters)
>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 110
Score = 37.1 bits (85), Expect = 2e-04
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 3/70 (4%)
Query: 1 MAYRSAYGFNSIIPGFPSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQV---GPAQYHKP 57
+ G YM + LR+ N+ + D +QC + P +
Sbjct: 40 VLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRI 99
Query: 58 IRANARLTVI 67
+ N+ L+V+
Sbjct: 100 HQMNSELSVL 109
>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 119
Score = 35.7 bits (81), Expect = 7e-04
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 22 VGDSSHGVYNLRIRNVSLTDDAEFQCQV--GPAQYHKPIRANARLTVI 67
VGD S ++ I N+ +D+ F C V P K + L V
Sbjct: 73 VGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKT--SQVTLYVF 118
>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo
sapiens) [TaxId: 9606]}
Length = 97
Score = 33.2 bits (75), Expect = 0.003
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 7 YGFNSIIPGFPSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQV 49
G + + S R G + L I+N+ + D + C+V
Sbjct: 46 KGPSKLNDRADS--RRSLWDQGNFPLIIKNLKIEDSDTYICEV 86
>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 105
Score = 32.2 bits (72), Expect = 0.010
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 5/69 (7%)
Query: 1 MAYRSAYGFNSIIPGFPSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQV---GPAQYHKP 57
M G +I P + + ++ I + +D+ ++C V + +
Sbjct: 38 MVLTMMSGDMNIWPEYKNRTIF--DITNNLSIVILALRPSDEGTYECVVLKYEKDAFKRE 95
Query: 58 IRANARLTV 66
A L+V
Sbjct: 96 HLAEVTLSV 104
>d1taza_ a.211.1.2 (A:) Catalytic domain of cyclic nucleotide
phosphodiesterase 1b, PDE1B {Human (Homo sapiens)
[TaxId: 9606]}
Length = 357
Score = 33.1 bits (75), Expect = 0.011
Identities = 8/50 (16%), Positives = 20/50 (40%)
Query: 76 ETLENNEWEEEEKEKEEEEEEEEEEKEKDEDEEKKREKKEEEEEKQKDKK 125
+ ++ + + ++ + E + D + K +E KQK K+
Sbjct: 304 DEDSKSKNQPSFQWRQPSLDVEVGDPNPDVVSFRSTWVKRIQENKQKWKE 353
Score = 32.4 bits (73), Expect = 0.022
Identities = 10/55 (18%), Positives = 22/55 (40%)
Query: 87 EKEKEEEEEEEEEEKEKDEDEEKKREKKEEEEEKQKDKKEEEVEEEEEEQKNKKK 141
EK + +E+ + K + + ++ E + D + Q+NK+K
Sbjct: 296 EKSVQPLADEDSKSKNQPSFQWRQPSLDVEVGDPNPDVVSFRSTWVKRIQENKQK 350
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp.
carotovora [TaxId: 554]}
Length = 376
Score = 32.8 bits (74), Expect = 0.013
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 22 VGDSSHGVYNLRIRNVSLTDDAEFQCQ 48
G+++ + ++NV LT D+ +Q +
Sbjct: 344 NGENAKKPIEVTMKNVKLTSDSTWQIK 370
>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car),
domain 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 124
Score = 31.9 bits (71), Expect = 0.014
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 6/68 (8%)
Query: 3 YRSAYGFNSIIPGFPS--YMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVG-PAQYHKPIR 59
Y ++ P + D G ++ + N+ L+D +QC+V
Sbjct: 59 YSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVA---N 115
Query: 60 ANARLTVI 67
L V+
Sbjct: 116 KKIHLVVL 123
>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 126
Score = 31.9 bits (71), Expect = 0.014
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 19 YMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVILP 69
+ G LRI+NV +D+ + C Y + A L V P
Sbjct: 70 ELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQE--EAAVELKVEDP 118
>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 118
Score = 30.6 bits (68), Expect = 0.038
Identities = 8/45 (17%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 23 GDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPI-RANARLTV 66
G+ H V NL ++++ D + + + ++ + +TV
Sbjct: 72 GNMDHKVCNLLLKDLKPEDSGTYNFRFEISDSNRWLDVKGTTVTV 116
>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein
phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 29.6 bits (65), Expect = 0.062
Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 16 FPSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66
++V S + + + N + D +++C + + I A L V
Sbjct: 46 PLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIR-TEGGVGISNYAELVV 95
>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 29.1 bits (64), Expect = 0.085
Identities = 8/51 (15%), Positives = 13/51 (25%), Gaps = 5/51 (9%)
Query: 16 FPSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66
+ + L +R+V L D + C L V
Sbjct: 46 PAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYR-----AGRPAGTVHLLV 91
>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human
(Homo sapiens) [TaxId: 9606]}
Length = 116
Score = 28.6 bits (63), Expect = 0.20
Identities = 8/52 (15%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 16 FPSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVI 67
+G + + I +S D ++C +G + + + L V+
Sbjct: 60 AGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLG--INSRGLSFDVSLEVL 109
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1
{Thermotoga maritima [TaxId: 2336]}
Length = 333
Score = 28.9 bits (64), Expect = 0.24
Identities = 16/66 (24%), Positives = 32/66 (48%)
Query: 86 EEKEKEEEEEEEEEEKEKDEDEEKKREKKEEEEEKQKDKKEEEVEEEEEEQKNKKKEEEE 145
+EK+KE E+ + ++ + E + EE + + +E +E E + + + E E
Sbjct: 2 KEKKKEIEKLLARPDLTPEQMKNYGMEYAKIEEIENITNRIKETQEFIELLREEGENELE 61
Query: 146 EEEKEK 151
E+ EK
Sbjct: 62 IEKYEK 67
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 29.4 bits (65), Expect = 0.24
Identities = 9/97 (9%), Positives = 32/97 (32%), Gaps = 13/97 (13%)
Query: 74 ASETLENNEWEEEEKEKEEEEEEEEEEKEKDEDEEKKREKKEEEEEKQKDKK-------- 125
E +E ++ + + E+DE+ + + ++
Sbjct: 643 NKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYLLGMR 702
Query: 126 -----EEEVEEEEEEQKNKKKEEEEEEEKEKVEMYRN 157
+E ++ ++++ K+ E E + +++
Sbjct: 703 IWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNT 739
Score = 27.1 bits (59), Expect = 1.2
Identities = 9/51 (17%), Positives = 22/51 (43%)
Query: 96 EEEEEKEKDEDEEKKREKKEEEEEKQKDKKEEEVEEEEEEQKNKKKEEEEE 146
+E +K + +EK+ E + + KD +++ E + + + E
Sbjct: 708 KERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDAEA 758
Score = 26.3 bits (57), Expect = 2.5
Identities = 10/51 (19%), Positives = 22/51 (43%)
Query: 78 LENNEWEEEEKEKEEEEEEEEEEKEKDEDEEKKREKKEEEEEKQKDKKEEE 128
L +++ K+K+E+E E E + + + K E Q+ + +
Sbjct: 706 LTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDA 756
Score = 25.9 bits (56), Expect = 2.8
Identities = 9/59 (15%), Positives = 24/59 (40%), Gaps = 7/59 (11%)
Query: 93 EEEEEEEEKEKDEDEEKKREKKEEEEEKQKDKKEEEVEEEEEEQKNKKKEEEEEEEKEK 151
+E ++ K+K EK+ E E K ++ + + + +E + + + +
Sbjct: 708 KERYQKLLKQKQ-------EKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDAEAR 759
Score = 25.2 bits (54), Expect = 5.3
Identities = 8/51 (15%), Positives = 21/51 (41%)
Query: 84 EEEEKEKEEEEEEEEEEKEKDEDEEKKREKKEEEEEKQKDKKEEEVEEEEE 134
+E ++ ++++E+E E E K + + + +E + E
Sbjct: 708 KERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDAEA 758
>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 27.7 bits (60), Expect = 0.25
Identities = 12/67 (17%), Positives = 20/67 (29%), Gaps = 5/67 (7%)
Query: 1 MAYRSAYGFNSIIPGFPSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRA 60
+ F + + S +L I N D E++CQ +P+
Sbjct: 20 TLTCNGNNFFEVSSTKWFHNGS-LSEETNSSLNIVNAKFEDSGEYKCQHQQVNESEPV-- 76
Query: 61 NARLTVI 67
L V
Sbjct: 77 --YLEVF 81
>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding
Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 121
Score = 28.2 bits (62), Expect = 0.26
Identities = 7/34 (20%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 23 GDSSHGVYNLRIRNVSLTDDAEFQCQV--GPAQY 54
GD L IR+ ++D + ++ G ++
Sbjct: 76 GDPQTKNCTLSIRDARMSDAGRYFFRMEKGNIKW 109
>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type
{Human (Homo sapiens) [TaxId: 9606]}
Length = 113
Score = 27.7 bits (60), Expect = 0.36
Identities = 7/51 (13%), Positives = 15/51 (29%), Gaps = 2/51 (3%)
Query: 23 GDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVILPQAIS 73
S + ++I ++C+V K + L V +
Sbjct: 61 RHSRVYTFEMQIIKAKDNFAGNYRCEV--TYKDKFDSCSFDLEVHESTGTT 109
>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor,
FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}
Length = 109
Score = 27.3 bits (59), Expect = 0.55
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 25 SSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVI 67
+ + L IRNV+ D E+ C +A LTV+
Sbjct: 69 TDKEIEVLYIRNVTFEDAGEYTCLA--GNSIGISFHSAWLTVL 109
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 27.7 bits (61), Expect = 0.66
Identities = 13/67 (19%), Positives = 26/67 (38%)
Query: 67 ILPQAISASETLENNEWEEEEKEKEEEEEEEEEEKEKDEDEEKKREKKEEEEEKQKDKKE 126
IL + A L+ E E E++ + E + + + + + E+ +
Sbjct: 311 ILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFVR 370
Query: 127 EEVEEEE 133
EV EE+
Sbjct: 371 LEVTEED 377
Score = 25.4 bits (55), Expect = 4.1
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 9/89 (10%)
Query: 80 NNEWEEEEKEKEEEEEEEEEEKEKDEDEEKKREKKEEEEEKQKDKKEEEVEEEEEE---- 135
E K EE + E + + E K RE + +E +++ + E + +
Sbjct: 285 KAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAEL 344
Query: 136 -----QKNKKKEEEEEEEKEKVEMYRNPV 159
K + + E E+ R V
Sbjct: 345 RYGELPKLEAEVEALSEKLRGARFVRLEV 373
>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 26.4 bits (57), Expect = 0.86
Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 4/67 (5%)
Query: 1 MAYRSAYGFNSIIPGFPSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRA 60
+ A NS F S+ +L I N++ +D+ E++ + +
Sbjct: 31 QKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESP----NITDTM 86
Query: 61 NARLTVI 67
L V+
Sbjct: 87 KFFLYVL 93
>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 26.3 bits (57), Expect = 0.86
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 6/40 (15%)
Query: 27 HGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66
+ L I + D AE+ Q ++A+L+V
Sbjct: 54 GKKHILIIEGATKADAAEYSVMTTGGQ------SSAKLSV 87
>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 98
Score = 26.2 bits (57), Expect = 0.96
Identities = 9/65 (13%), Positives = 22/65 (33%), Gaps = 2/65 (3%)
Query: 3 YRSAYGFNSIIPGFPSYMRVGDSSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANA 62
F + F ++G +L+I+N++ D + V + +
Sbjct: 35 STLVAEFKRKMKPFLKSGAFEILANG--DLKIKNLTRDDSGTYNVTVYSTNGTRILNKAL 92
Query: 63 RLTVI 67
L ++
Sbjct: 93 DLRIL 97
>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C,
different domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 110
Score = 26.2 bits (56), Expect = 1.1
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 25 SSHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66
S ++ L I + ++C+V + K +N LTV
Sbjct: 67 SKVYLFELHITDAQPAFTGGYRCEV--STKDKFDCSNFNLTV 106
>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM,
N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 102
Score = 26.2 bits (56), Expect = 1.1
Identities = 8/42 (19%), Positives = 16/42 (38%)
Query: 26 SHGVYNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTVI 67
+ + +V+ D+ E+ C V + LTV+
Sbjct: 61 TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVL 102
>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 217
Score = 26.9 bits (59), Expect = 1.1
Identities = 11/75 (14%), Positives = 27/75 (36%), Gaps = 1/75 (1%)
Query: 81 NEWEEEEKEKEEEEEEEEEEKEKDEDEEKK-REKKEEEEEKQKDKKEEEVEEEEEEQKNK 139
N+W + + E E+ + +KE ++ +E+ K + E + K
Sbjct: 14 NDWRKFKLESEDGDSIPPSKKEILRQMSSPQSRDDKDSKERMSRKMSIQEYELIHQDKED 73
Query: 140 KKEEEEEEEKEKVEM 154
+ + + +M
Sbjct: 74 EGCLRKYRRQCMQDM 88
>d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS)
{Pyrococcus abyssi [TaxId: 29292]}
Length = 210
Score = 26.7 bits (58), Expect = 1.3
Identities = 9/76 (11%), Positives = 28/76 (36%)
Query: 79 ENNEWEEEEKEKEEEEEEEEEEKEKDEDEEKKREKKEEEEEKQKDKKEEEVEEEEEEQKN 138
E WE E + + E +K D++ + + +++ + +
Sbjct: 127 EVKRWEFRELPAGHKVRKPEILFKKVTDDQIIYFILNYMAKGNPEGARILLDKYYKREDV 186
Query: 139 KKKEEEEEEEKEKVEM 154
+ +E+ ++ +V +
Sbjct: 187 IRVAKEKFGDEAEVVL 202
>d1siga_ a.177.1.1 (A:) Sigma70 {Escherichia coli [TaxId: 562]}
Length = 334
Score = 26.4 bits (57), Expect = 1.8
Identities = 9/77 (11%), Positives = 23/77 (29%)
Query: 89 EKEEEEEEEEEEKEKDEDEEKKREKKEEEEEKQKDKKEEEVEEEEEEQKNKKKEEEEEEE 148
EE+ E ++ + E+E+E+ D + + + + ++K E +
Sbjct: 56 PNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQ 115
Query: 149 KEKVEMYRNPVPMYRNP 165
Sbjct: 116 YVVTRDTIKAKGRSHAT 132
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 26.5 bits (58), Expect = 1.9
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 121 QKDKKEEEVEEEEEEQKNKKKEEEEEEEKEKV 152
+ KE + E EE+ + K +E+ EKE++
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKERL 332
Score = 25.3 bits (55), Expect = 4.0
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 98 EEEKEKDEDEEKKREKKEEEEEKQKDK 124
+E +++ E EEK R K +E+ +K++
Sbjct: 305 KENQKRRETEEKMRRAKLAKEKAEKER 331
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 26.2 bits (58), Expect = 2.0
Identities = 10/41 (24%), Positives = 24/41 (58%), Gaps = 6/41 (14%)
Query: 95 EEEEEEKEKDEDEEKKREKKEEEEEKQK------DKKEEEV 129
+ ++E+K++ +EKK+ + E E+ ++ D + E+V
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEEDYKFCELDGRREQV 142
Score = 24.3 bits (53), Expect = 8.9
Identities = 8/45 (17%), Positives = 27/45 (60%), Gaps = 7/45 (15%)
Query: 119 EKQKDKKEEEVEEEEEEQKNKKKEEEEE-------EEKEKVEMYR 156
+ QK++K++ +E+++ + ++++ EE+ +E+V ++
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEEDYKFCELDGRREQVGNFK 146
>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 365
Score = 26.3 bits (57), Expect = 2.3
Identities = 13/63 (20%), Positives = 29/63 (46%)
Query: 78 LENNEWEEEEKEKEEEEEEEEEEKEKDEDEEKKREKKEEEEEKQKDKKEEEVEEEEEEQK 137
W EEE+ E+ +EE ++ + +E ++K + ++ ++E+ E K
Sbjct: 301 EAKGLWSEEEENNVIEQAKEEIKEAIKKADETPKQKVTDLISIMFEELPFNLKEQYEIYK 360
Query: 138 NKK 140
K+
Sbjct: 361 EKE 363
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 26.0 bits (56), Expect = 2.8
Identities = 3/49 (6%), Positives = 19/49 (38%)
Query: 107 EEKKREKKEEEEEKQKDKKEEEVEEEEEEQKNKKKEEEEEEEKEKVEMY 155
++ E E++ + + + + + + K+ + + + ++
Sbjct: 2 RQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRGNIRVF 50
Score = 25.6 bits (55), Expect = 3.5
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 84 EEEEKEKEEEEEEEEEEKEKDEDEEKKREK 113
EE + E++ E E KE+ +R++
Sbjct: 6 EELLRCNEQQAAELETCKEQLFQSNMERKE 35
Score = 24.1 bits (51), Expect = 9.6
Identities = 5/41 (12%), Positives = 16/41 (39%)
Query: 91 EEEEEEEEEEKEKDEDEEKKREKKEEEEEKQKDKKEEEVEE 131
+ EE E+ E + +++ + ++ + V +
Sbjct: 2 RQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMD 42
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 25.7 bits (55), Expect = 2.9
Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 61 NARLTVIL---PQAISASETLENNEWEEEEKEKEEEEEEEEEEKEKDEDEEKKREKKEEE 117
NA+ + + P + ET + + + + + KE ++ KE+
Sbjct: 290 NAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSKEVARLKKLVSYWKEQA 349
Query: 118 EEKQKDKKEEEVEEE 132
K D++ EE+++E
Sbjct: 350 GRKGDDEELEEIQDE 364
Score = 25.7 bits (55), Expect = 3.1
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 101 KEKDEDEEKKREKKEEEEEKQKDKKEEEVEEEEEE 135
E K+ +E+ + +EE+EE ++E
Sbjct: 330 VSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 364
>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl
transferase subunit alpha, AccA {Escherichia coli
[TaxId: 562]}
Length = 316
Score = 25.8 bits (56), Expect = 3.0
Identities = 10/67 (14%), Positives = 25/67 (37%)
Query: 97 EEEEKEKDEDEEKKREKKEEEEEKQKDKKEEEVEEEEEEQKNKKKEEEEEEEKEKVEMYR 156
E+ E + + ++E+ + EE E+ + +K + + ++ R
Sbjct: 6 EQPIAELEAKIDSLTAGSRQDEKLDINIDEEVHRLREKSVELTRKIFADLGAWQIAQLAR 65
Query: 157 NPVPMYR 163
+P Y
Sbjct: 66 HPQRPYT 72
>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a,
CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 107
Score = 25.0 bits (54), Expect = 3.0
Identities = 5/37 (13%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 30 YNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66
+L + +++ D + + + ++ +A R V
Sbjct: 71 GSLLFQMITMKDMGVYTLDMT-DENYRRTQATVRFHV 106
>d1zhxa1 d.338.1.1 (A:2-434) Oxysterol-binding protein homolog 4,
KES1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 433
Score = 25.8 bits (56), Expect = 3.1
Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Query: 78 LENNEWEEEEKEKEEEEE---EEEEEKEKDEDEEKKREKKEEEEEKQKDKKEEEVEEEEE 134
++ ++ K K E EE E +E+E ++R K+ + ++ E+++
Sbjct: 323 IKLGDFNLIAKTKTELEETQRELRKEEEAKGISWQRRWFKDFDYSVTPEEGALVPEKDDT 382
Query: 135 EQKNKKK 141
K
Sbjct: 383 FLKLASA 389
Score = 25.8 bits (56), Expect = 3.4
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 118 EEKQKDKKEEEVEEEEEEQKNKKKEEEEEEEK 149
+ + + E EE Q+ +KEEE +
Sbjct: 324 KLGDFNLIAKTKTELEETQRELRKEEEAKGIS 355
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 25.4 bits (56), Expect = 3.2
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 95 EEEEEEKEKDEDEEKKREKKEEEEEKQK 122
+ + E +++ EEK + K+E E+ ++
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKE 137
Score = 23.9 bits (52), Expect = 9.9
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 129 VEEEEEEQKNKKKEEEEEEEKEKVEM 154
+ + E +K KEE+ + ++E ++
Sbjct: 109 FKAQTEARKQMSKEEKLKIKEENEKL 134
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 25.7 bits (56), Expect = 3.3
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 82 EWEEEEKEKEEEEEEEEEEKEKDEDEEKKREKKEEEEEKQK 122
+ + E+ K +E E E E DEE+K + EEE+ +
Sbjct: 75 QPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKG 115
Score = 25.4 bits (55), Expect = 4.4
Identities = 5/42 (11%), Positives = 23/42 (54%)
Query: 87 EKEKEEEEEEEEEEKEKDEDEEKKREKKEEEEEKQKDKKEEE 128
+++ + E+ + +E + +E + +EE+ + ++++ +
Sbjct: 73 QEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVK 114
Score = 24.2 bits (52), Expect = 9.5
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 110 KREKKEEEEEKQKDKKEEEVEEEEEEQKNKKKEEEEEEEKEK 151
+ + K E+ K ++ E E E + +K + + EEE+ K
Sbjct: 73 QEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVK 114
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 268
Score = 25.4 bits (55), Expect = 3.3
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 84 EEEEKEKEEEEEEEEEEKEKDEDEEKKREKKEEEEEKQKDKKEEEVEEE 132
+ E+ +EE EE+ EK K E+ + E+ K K+E E
Sbjct: 213 DPEKATQEEVEEKNILEKVKAAMTEEDLAELARATEELKLKQETPDPPE 261
Score = 24.6 bits (53), Expect = 8.0
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 106 DEEKKREKKEEEEEKQKDKKEEEVEEEEEEQKNKKKEEEEEEEKE 150
D EK +++ EE+ + K EE+ E +E + ++E
Sbjct: 213 DPEKATQEEVEEKNILEKVKAAMTEEDLAELARATEELKLKQETP 257
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 24.9 bits (54), Expect = 3.4
Identities = 15/78 (19%), Positives = 32/78 (41%)
Query: 59 RANARLTVILPQAISASETLENNEWEEEEKEKEEEEEEEEEEKEKDEDEEKKREKKEEEE 118
+ + T+ I A E+L + E KE +E + ++ K + EEE
Sbjct: 51 NKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECKTVALKRRKASSRLENLGIPEEEL 110
Query: 119 EKQKDKKEEEVEEEEEEQ 136
+Q+ + + +++ E
Sbjct: 111 LRQQQELFAKARQQQAEL 128
>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2,
mapkap2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 335
Score = 25.4 bits (55), Expect = 3.7
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 120 KQKDKKEEEVEEEEEEQKNKKKEEEEEEEKEKVEMYRNPV 159
K+ ++ E+V+EE + + E+ + +K+E NP+
Sbjct: 293 KEDKERWEDVKEEMTSALATMRVDYEQIKIKKIEDASNPL 332
>d1zroa1 a.264.1.1 (A:8-282) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 275
Score = 25.0 bits (54), Expect = 4.8
Identities = 9/67 (13%), Positives = 22/67 (32%)
Query: 84 EEEEKEKEEEEEEEEEEKEKDEDEEKKREKKEEEEEKQKDKKEEEVEEEEEEQKNKKKEE 143
+ + K E E+E + + + E + E + +E + K
Sbjct: 192 KSKCKNNALYEACEKECIDPCMKYRDWIIRSKFEWHTLSKEYETQKVPKENAENYLIKIS 251
Query: 144 EEEEEKE 150
E + + +
Sbjct: 252 ENKNDAK 258
>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP
module {Pseudomonas putida [TaxId: 303]}
Length = 407
Score = 25.2 bits (54), Expect = 5.0
Identities = 8/43 (18%), Positives = 13/43 (30%)
Query: 78 LENNEWEEEEKEKEEEEEEEEEEKEKDEDEEKKREKKEEEEEK 120
++ W EEE + E E + E E+
Sbjct: 343 IKIGHWSEEEHQATTAEFEAAVIAAQKEAEQYGTLANGHIPSA 385
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 250
Score = 25.0 bits (54), Expect = 5.4
Identities = 17/92 (18%), Positives = 37/92 (40%), Gaps = 7/92 (7%)
Query: 63 RLTVILPQAISASETLENNEWEEEEKEKEEEE-------EEEEEEKEKDEDEEKKREKKE 115
+ T I + +A L+ + E E K + + K E E +E
Sbjct: 159 KATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRE 218
Query: 116 EEEEKQKDKKEEEVEEEEEEQKNKKKEEEEEE 147
+ + K++EVE+ ++ + ++ + E E+
Sbjct: 219 NGKTVIRVLKQKEVEQLIKKHEEEEAKAEREK 250
>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 89
Score = 24.0 bits (51), Expect = 6.0
Identities = 7/37 (18%), Positives = 11/37 (29%), Gaps = 2/37 (5%)
Query: 30 YNLRIRNVSLTDDAEFQCQVGPAQYHKPIRANARLTV 66
L I+ V D + C+ H + V
Sbjct: 54 SGLVIKGVKNGDKGYYGCRA--TNEHGDKYFETLVQV 88
>d1c8ba_ c.56.1.2 (A:) Germination protease {Bacillus megaterium
[TaxId: 1404]}
Length = 371
Score = 24.4 bits (53), Expect = 7.8
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 93 EEEEEEEEKEKDEDEEKKREKKEEEEEKQKDKKEEEVE--EEEEEQKNKKK 141
E ++ E + + + + + +E++++ K VE EE E KKK
Sbjct: 19 EAKDIALENQPKPNNQSEIKGVIVKEKEEQGVKISMVEITEEGAEAIGKKK 69
>d2gcla1 b.55.1.10 (A:237-474) FACT complex subunit POB3, middle
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 238
Score = 24.0 bits (52), Expect = 9.5
Identities = 8/46 (17%), Positives = 22/46 (47%)
Query: 95 EEEEEEKEKDEDEEKKREKKEEEEEKQKDKKEEEVEEEEEEQKNKK 140
+EE E + EDE+ + K++ +++ K + + +++
Sbjct: 87 DEETEVQLNLEDEDYEENYKDKLKKQYDAKTHIVLSHVLKGLTDRR 132
>d1f3ub_ b.65.1.1 (B:) TFIIF alpha subunit, Rap74 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 149
Score = 23.6 bits (51), Expect = 9.8
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 96 EEEEEKEKDEDEEKKREKKEEEEEKQKDKKEEEVEEEE 133
+EEE E E R+ +EE K+ +E E+
Sbjct: 54 QEEEMPESGAGSEFNRKLREEARRKKYGIVLKEFRPED 91
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 503
Score = 24.3 bits (51), Expect = 10.0
Identities = 9/62 (14%), Positives = 31/62 (50%)
Query: 85 EEEKEKEEEEEEEEEEKEKDEDEEKKREKKEEEEEKQKDKKEEEVEEEEEEQKNKKKEEE 144
+E + + + ++ E + ++DE K+R + D+++E +++ ++ ++E
Sbjct: 19 DELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQEL 78
Query: 145 EE 146
+
Sbjct: 79 PQ 80
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.299 0.123 0.324
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 645,190
Number of extensions: 33656
Number of successful extensions: 1071
Number of sequences better than 10.0: 1
Number of HSP's gapped: 699
Number of HSP's successfully gapped: 378
Length of query: 167
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 88
Effective length of database: 1,322,926
Effective search space: 116417488
Effective search space used: 116417488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (22.0 bits)
S2: 49 (23.4 bits)