Query psy7731
Match_columns 139
No_of_seqs 106 out of 112
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 17:23:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7731.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7731hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10190 Tmemb_170: Putative t 100.0 8.5E-46 1.8E-50 272.4 13.7 105 35-139 1-105 (105)
2 KOG4349|consensus 100.0 5.8E-40 1.3E-44 248.9 11.8 126 14-139 16-143 (143)
3 PF05454 DAG1: Dystroglycan (D 74.5 0.99 2.1E-05 38.7 0.0 41 34-75 137-177 (290)
4 PF11669 WBP-1: WW domain-bind 68.8 8 0.00017 28.1 3.7 17 36-52 16-32 (102)
5 PF12911 OppC_N: N-terminal TM 55.6 14 0.0003 23.1 2.6 25 68-92 12-39 (56)
6 PF13858 DUF4199: Protein of u 54.9 20 0.00044 26.6 3.8 29 77-105 133-161 (163)
7 COG4591 LolE ABC-type transpor 50.3 78 0.0017 28.2 7.3 58 45-103 274-340 (408)
8 PF01864 DUF46: Putative integ 42.5 49 0.0011 26.4 4.4 22 112-133 87-108 (175)
9 COG0705 Membrane associated se 38.4 1.9E+02 0.0042 22.6 10.2 46 46-91 67-121 (228)
10 PF12732 YtxH: YtxH-like prote 38.0 36 0.00079 22.7 2.6 15 88-102 3-17 (74)
11 PRK10907 intramembrane serine 32.7 2E+02 0.0044 24.2 6.9 14 91-104 255-268 (276)
12 COG3038 CybB Cytochrome B561 [ 32.1 63 0.0014 26.0 3.5 38 33-70 133-170 (181)
13 PF13940 Ldr_toxin: Toxin Ldr, 31.7 57 0.0012 19.9 2.4 18 86-103 14-31 (35)
14 TIGR02005 PTS-IIBC-alpha PTS s 31.2 2.1E+02 0.0045 26.6 7.1 68 59-126 144-225 (524)
15 PTZ00127 cytochrome c oxidase 30.5 2.2E+02 0.0048 25.2 7.0 20 77-96 178-197 (403)
16 PF11833 DUF3353: Protein of u 30.1 2.9E+02 0.0063 22.2 7.8 35 58-94 121-158 (194)
17 PF12273 RCR: Chitin synthesis 28.9 48 0.001 24.4 2.2 13 62-74 18-30 (130)
18 PF07950 DUF1691: Protein of u 27.5 1.8E+02 0.004 20.9 5.0 36 35-70 33-68 (110)
19 PF10166 DUF2368: Uncharacteri 27.2 1.6E+02 0.0035 22.5 4.9 32 45-80 49-81 (131)
20 PRK10907 intramembrane serine 26.8 1.7E+02 0.0036 24.8 5.4 12 47-58 135-146 (276)
21 PF14019 DUF4235: Protein of u 25.4 2.3E+02 0.005 19.4 6.4 47 83-129 3-59 (78)
22 COG4980 GvpP Gas vesicle prote 24.6 69 0.0015 24.2 2.4 17 84-100 9-25 (115)
23 PRK11588 hypothetical protein; 24.3 2E+02 0.0043 26.7 5.7 86 40-125 111-220 (506)
24 PRK04032 hypothetical protein; 23.2 2.7E+02 0.0059 22.0 5.6 17 88-104 40-56 (159)
25 PRK10535 macrolide transporter 22.8 3.4E+02 0.0073 25.2 7.0 26 78-103 576-601 (648)
26 cd03497 SQR_TypeB_1_TM Succina 22.3 2.4E+02 0.0053 22.6 5.3 32 36-67 140-171 (207)
27 COG1108 ZnuB ABC-type Mn2+/Zn2 20.4 5.3E+02 0.012 21.8 10.6 89 45-133 13-113 (274)
28 PRK05771 V-type ATP synthase s 20.3 7E+02 0.015 23.1 9.9 23 45-67 444-466 (646)
29 PF04039 MnhB: Domain related 20.1 3.4E+02 0.0075 19.5 5.4 46 88-134 32-82 (124)
No 1
>PF10190 Tmemb_170: Putative transmembrane protein 170; InterPro: IPR019334 This entry represents a group of putative transmembrane proteins conserved from nematodes to humans. The protein is only approximately 130 amino acids in length. The function is unknown.
Probab=100.00 E-value=8.5e-46 Score=272.41 Aligned_cols=105 Identities=63% Similarity=1.020 Sum_probs=104.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHhHhhHHHHHHHHHHHHHHHHhCCccchHH
Q psy7731 35 LTTFAEMWWQIFLWALFSSIFVHTTAAIIAFGTLRKHHFGKYCPIFILIMGVFPPLTSGIISSAMIAMVYSCAEMSMAPV 114 (139)
Q Consensus 35 L~~~~diW~ft~lWtLis~~~~h~~agl~A~~~lrrhk~~~~ipi~yll~G~l~~l~~G~Itg~~Ia~VY~Ag~~~Mstw 114 (139)
|++|+||||++|+||+++|.++|.+||++|++++||||++|++|+++++||+++|+++|+++|++||+|||||+|+||||
T Consensus 1 ~~~f~emW~~iflW~l~ss~~vh~~A~liA~~~lRkhk~~~f~pi~~l~mg~l~p~~~G~itSa~IA~vY~a~~~~M~~~ 80 (105)
T PF10190_consen 1 LCDFSEMWYWIFLWALFSSIFVHLIAGLIAFFTLRKHKFGRFIPIVILLMGVLGPLTGGSITSAAIAGVYRAAGFRMSTW 80 (105)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCcccHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcC
Q psy7731 115 YAMFWGVGQTVLSAAVGFTRILATL 139 (139)
Q Consensus 115 ip~~wGv~qtl~~ii~SFsrilaTL 139 (139)
+|++||++||++.+++|||||||||
T Consensus 81 ~a~vwGvgqt~~~~i~sFtRilatL 105 (105)
T PF10190_consen 81 EAMVWGVGQTILHLIISFTRILATL 105 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999998
No 2
>KOG4349|consensus
Probab=100.00 E-value=5.8e-40 Score=248.91 Aligned_cols=126 Identities=39% Similarity=0.592 Sum_probs=116.6
Q ss_pred cccCCCCchhhhhcc-c-cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHhHhhHH
Q psy7731 14 VTTATILSSIADVLS-F-ANYCTLTTFAEMWWQIFLWALFSSIFVHTTAAIIAFGTLRKHHFGKYCPIFILIMGVFPPLT 91 (139)
Q Consensus 14 ~~~tp~fpSl~~~l~-l-~~~~~L~~~~diW~ft~lWtLis~~~~h~~agl~A~~~lrrhk~~~~ipi~yll~G~l~~l~ 91 (139)
.-|+-+.+|.+.+-+ + .++++|++|+||||.+|+|+++|++++|+.|+++|++++||||++||+|+.+++||++.|++
T Consensus 16 ~~~~l~l~~~~~v~g~L~~s~~~ln~f~Emwy~vFLWal~Ss~fih~~A~ilalFTLRkHkygrF~si~iliMgfi~P~~ 95 (143)
T KOG4349|consen 16 NYTNLTLESTYSVAGALLLSGKYLNDFWEMWYSVFLWALLSSMFIHLGATILALFTLRKHKYGRFISIPILIMGFIIPFV 95 (143)
T ss_pred ccchhhHHhHHHHHhhhccCcchhccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccceeeehHHHHHHHHHHHH
Confidence 345556666666644 2 23599999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHhhhhhhhcC
Q psy7731 92 SGIISSAMIAMVYSCAEMSMAPVYAMFWGVGQTVLSAAVGFTRILATL 139 (139)
Q Consensus 92 ~G~Itg~~Ia~VY~Ag~~~Mstwip~~wGv~qtl~~ii~SFsrilaTL 139 (139)
+|.++|+++|.+|||++++||||++++||.+||++.++.||+||+|||
T Consensus 96 ~Gi~tS~viA~~~~As~~~ms~~y~~i~G~~QT~~i~v~s~tRI~ATL 143 (143)
T KOG4349|consen 96 FGIPTSMVLALAMYASKNAVSTWYCAIMGIIQTLLIFVTSVTRIHATL 143 (143)
T ss_pred hcchHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999998
No 3
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=74.52 E-value=0.99 Score=38.75 Aligned_cols=41 Identities=24% Similarity=0.358 Sum_probs=0.0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q psy7731 34 TLTTFAEMWWQIFLWALFSSIFVHTTAAIIAFGTLRKHHFGK 75 (139)
Q Consensus 34 ~L~~~~diW~ft~lWtLis~~~~h~~agl~A~~~lrrhk~~~ 75 (139)
.-..+.|.|..||..+++..... ++||++|++..||+|.|+
T Consensus 137 ~~~s~~d~yL~T~IpaVVI~~iL-LIA~iIa~icyrrkR~GK 177 (290)
T PF05454_consen 137 PKSSFSDDYLHTFIPAVVIAAIL-LIAGIIACICYRRKRKGK 177 (290)
T ss_dssp ------------------------------------------
T ss_pred CCcccccchHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhccc
Confidence 34678899999999777766555 579999999988877665
No 4
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=68.84 E-value=8 Score=28.14 Aligned_cols=17 Identities=24% Similarity=0.864 Sum_probs=13.4
Q ss_pred cchhhHHHHHHHHHHHH
Q psy7731 36 TTFAEMWWQIFLWALFS 52 (139)
Q Consensus 36 ~~~~diW~ft~lWtLis 52 (139)
.++.++|+|-++|+++.
T Consensus 16 ~~~~~~w~FWlv~~lii 32 (102)
T PF11669_consen 16 SYYYELWYFWLVWVLII 32 (102)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 45789999988888864
No 5
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=55.60 E-value=14 Score=23.07 Aligned_cols=25 Identities=16% Similarity=0.587 Sum_probs=15.6
Q ss_pred hhhccccch---HHHHHHHHHhHhhHHH
Q psy7731 68 LRKHHFGKY---CPIFILIMGVFPPLTS 92 (139)
Q Consensus 68 lrrhk~~~~---ipi~yll~G~l~~l~~ 92 (139)
.+|+|.+.+ +-+++++++.+.++.+
T Consensus 12 f~~nk~a~~gl~il~~~vl~ai~~p~~~ 39 (56)
T PF12911_consen 12 FRRNKLAVIGLIILLILVLLAIFAPFIS 39 (56)
T ss_pred HHhCchHHHHHHHHHHHHHHHHHHHHcC
Confidence 677776653 4556666666666653
No 6
>PF13858 DUF4199: Protein of unknown function (DUF4199)
Probab=54.93 E-value=20 Score=26.58 Aligned_cols=29 Identities=28% Similarity=0.468 Sum_probs=25.7
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q psy7731 77 CPIFILIMGVFPPLTSGIISSAMIAMVYS 105 (139)
Q Consensus 77 ipi~yll~G~l~~l~~G~Itg~~Ia~VY~ 105 (139)
-|..+.+.+.+..+..|.+.|+++|++.|
T Consensus 133 ~~~~~~~~~~~~~l~~G~i~sli~a~i~k 161 (163)
T PF13858_consen 133 SPFSLAFSGFISNLIFGFIISLIIALILK 161 (163)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36777888999999999999999999876
No 7
>COG4591 LolE ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]
Probab=50.29 E-value=78 Score=28.23 Aligned_cols=58 Identities=10% Similarity=0.176 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccc---------hHHHHHHHHHhHhhHHHHHHHHHHHHHH
Q psy7731 45 IFLWALFSSIFVHTTAAIIAFGTLRKHHFGK---------YCPIFILIMGVFPPLTSGIISSAMIAMV 103 (139)
Q Consensus 45 t~lWtLis~~~~h~~agl~A~~~lrrhk~~~---------~ipi~yll~G~l~~l~~G~Itg~~Ia~V 103 (139)
.++=-.+..+.++.+..|.+.++-|++..+- -+-.+|+.-|.+.|++ |++.|.++|.+
T Consensus 274 ~il~LIi~VA~fnI~ssL~m~V~ek~~eIAILrtmGa~~~~I~~iFl~~G~~iG~i-G~llG~iLG~~ 340 (408)
T COG4591 274 IILVLIILVAAFNIISSLTMLVKEKTREIAILRAMGASPSHIMRIFLLQGLIIGLI-GALLGVILGVL 340 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHcCCChHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3444455667778888888888877765332 2667777777777766 66666666543
No 8
>PF01864 DUF46: Putative integral membrane protein DUF46; InterPro: IPR002726 This archaebacterial protein has no known function. It contains several predicted transmembrane regions, suggesting it is an integral membrane protein.
Probab=42.47 E-value=49 Score=26.39 Aligned_cols=22 Identities=14% Similarity=0.264 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh
Q psy7731 112 APVYAMFWGVGQTVLSAAVGFT 133 (139)
Q Consensus 112 stwip~~wGv~qtl~~ii~SFs 133 (139)
.-...+..|.+-.+-+...||-
T Consensus 87 ~~~~g~ll~~gamlGDl~~SFI 108 (175)
T PF01864_consen 87 NLLLGFLLGLGAMLGDLPGSFI 108 (175)
T ss_pred HHHHHHHHHHHHHHhHHHHHHH
Confidence 3446677888888888888884
No 9
>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]
Probab=38.45 E-value=1.9e+02 Score=22.58 Aligned_cols=46 Identities=30% Similarity=0.651 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHH--------HHHHHHHHHhhhccccch-HHHHHHHHHhHhhHH
Q psy7731 46 FLWALFSSIFVHT--------TAAIIAFGTLRKHHFGKY-CPIFILIMGVFPPLT 91 (139)
Q Consensus 46 ~lWtLis~~~~h~--------~agl~A~~~lrrhk~~~~-ipi~yll~G~l~~l~ 91 (139)
-.|+++.+.+.|. ...++.+...-.++.+.. .-++|++.|.+.++.
T Consensus 67 ~~w~lit~~FlH~~~~Hll~N~~~l~~fg~~le~~~G~~~f~~~yl~~gl~~~~~ 121 (228)
T COG0705 67 QLWRLITAIFLHAGFLHLLFNMLALWVFGSNLERRLGTLRFLLFYLLSGLLAGLA 121 (228)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHH
Confidence 4799999999998 444555554333333332 445566666555544
No 10
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=37.98 E-value=36 Score=22.71 Aligned_cols=15 Identities=13% Similarity=0.193 Sum_probs=7.1
Q ss_pred hhHHHHHHHHHHHHH
Q psy7731 88 PPLTSGIISSAMIAM 102 (139)
Q Consensus 88 ~~l~~G~Itg~~Ia~ 102 (139)
.+++.|+++|++++-
T Consensus 3 ~g~l~Ga~~Ga~~gl 17 (74)
T PF12732_consen 3 LGFLAGAAAGAAAGL 17 (74)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445555554443
No 11
>PRK10907 intramembrane serine protease GlpG; Provisional
Probab=32.74 E-value=2e+02 Score=24.24 Aligned_cols=14 Identities=14% Similarity=0.200 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHH
Q psy7731 91 TSGIISSAMIAMVY 104 (139)
Q Consensus 91 ~~G~Itg~~Ia~VY 104 (139)
++|.++|+++|..+
T Consensus 255 lgGli~Gll~g~~~ 268 (276)
T PRK10907 255 VAGLAVGLAMAFWD 268 (276)
T ss_pred HHHHHHHHHHHHHh
Confidence 45666666665543
No 12
>COG3038 CybB Cytochrome B561 [Energy production and conversion]
Probab=32.15 E-value=63 Score=25.97 Aligned_cols=38 Identities=21% Similarity=0.293 Sum_probs=31.1
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy7731 33 CTLTTFAEMWWQIFLWALFSSIFVHTTAAIIAFGTLRK 70 (139)
Q Consensus 33 ~~L~~~~diW~ft~lWtLis~~~~h~~agl~A~~~lrr 70 (139)
..+.+...-+-.++-|.+....+.|..|++.=.+.+|.
T Consensus 133 ~~~~~~~~~~H~~la~~~~~lv~lHa~AAl~HH~i~kD 170 (181)
T COG3038 133 PALADLAKAIHETLAWLLYALIGLHAAAALKHHFIDKD 170 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44555555666999999999999999999998888665
No 13
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=31.71 E-value=57 Score=19.93 Aligned_cols=18 Identities=28% Similarity=0.636 Sum_probs=14.0
Q ss_pred hHhhHHHHHHHHHHHHHH
Q psy7731 86 VFPPLTSGIISSAMIAMV 103 (139)
Q Consensus 86 ~l~~l~~G~Itg~~Ia~V 103 (139)
...|.++|.++|++++..
T Consensus 14 LAAP~iagIi~s~iv~w~ 31 (35)
T PF13940_consen 14 LAAPIIAGIIASLIVGWL 31 (35)
T ss_pred hHhHHHHHHHHHHHHHHH
Confidence 457888999999888753
No 14
>TIGR02005 PTS-IIBC-alpha PTS system, alpha-glucoside-specific IIBC component. This model represents a family of fused PTS enzyme II B and C domains. A gene from Clostridium has been partially characterized as a maltose transporter, while genes from Fusobacterium and Klebsiella have been proposed to transport the five non-standard isomers of sucrose.
Probab=31.17 E-value=2.1e+02 Score=26.58 Aligned_cols=68 Identities=6% Similarity=-0.048 Sum_probs=41.6
Q ss_pred HHHHHHHHHhhh-cc-----------ccchHHHHHHHHHhHhhHHHHHHHHHHHHHHHHhCC--ccchHHHHHHHHHHHH
Q psy7731 59 TAAIIAFGTLRK-HH-----------FGKYCPIFILIMGVFPPLTSGIISSAMIAMVYSCAE--MSMAPVYAMFWGVGQT 124 (139)
Q Consensus 59 ~agl~A~~~lrr-hk-----------~~~~ipi~yll~G~l~~l~~G~Itg~~Ia~VY~Ag~--~~Mstwip~~wGv~qt 124 (139)
++|+++.....| |+ -.|++|++-.+...+-++..+.+=-.+=.+++.-|. .++...-++++|+.|=
T Consensus 144 i~G~i~a~l~Nkf~~ikLP~~L~FF~G~RfVpIi~~~~~~~l~~~~~~iWP~i~~gi~~l~~~i~~~g~~G~fiyG~leR 223 (524)
T TIGR02005 144 IISGIITYIHNRFFDKRLPVFLGIFQGTTFVVTIAFFVMLPCAAITCLVWPKVQMGIGSLQAFLISSGYIGVWLYTFLER 223 (524)
T ss_pred HHHHHHHHHHHHHhccccchhhhhcCCCcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 888888888777 55 124688887777666666666554444444444333 2234566777777664
Q ss_pred HH
Q psy7731 125 VL 126 (139)
Q Consensus 125 l~ 126 (139)
++
T Consensus 224 lL 225 (524)
T TIGR02005 224 IL 225 (524)
T ss_pred Hh
Confidence 43
No 15
>PTZ00127 cytochrome c oxidase assembly protein; Provisional
Probab=30.51 E-value=2.2e+02 Score=25.22 Aligned_cols=20 Identities=10% Similarity=-0.220 Sum_probs=14.2
Q ss_pred HHHHHHHHHhHhhHHHHHHH
Q psy7731 77 CPIFILIMGVFPPLTSGIIS 96 (139)
Q Consensus 77 ipi~yll~G~l~~l~~G~It 96 (139)
.++..+..|++||++++--+
T Consensus 178 ~l~~ll~L~~~Qg~lG~~~V 197 (403)
T PTZ00127 178 RLSAIGGLGGAQGFVGWWMV 197 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44556667899999987653
No 16
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=30.11 E-value=2.9e+02 Score=22.19 Aligned_cols=35 Identities=20% Similarity=0.170 Sum_probs=16.2
Q ss_pred HHHHHHHHHH--hhh-ccccchHHHHHHHHHhHhhHHHHH
Q psy7731 58 TTAAIIAFGT--LRK-HHFGKYCPIFILIMGVFPPLTSGI 94 (139)
Q Consensus 58 ~~agl~A~~~--lrr-hk~~~~ipi~yll~G~l~~l~~G~ 94 (139)
+..|+.+++. .|| .|++|. +.+-+.|++.|.+.|+
T Consensus 121 Lal~~~~~iyfl~~K~~~~~rA--~~~~~~~L~~G~~lGs 158 (194)
T PF11833_consen 121 LALGLGACIYFLNRKERKLGRA--FLWTLGGLVVGLILGS 158 (194)
T ss_pred HHHHHHHHHHHHHHhcchHHHH--HHHHHHHHHHHHHHHH
Confidence 3455555444 334 566664 3344444444444333
No 17
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=28.87 E-value=48 Score=24.40 Aligned_cols=13 Identities=15% Similarity=0.250 Sum_probs=5.8
Q ss_pred HHHHHHhhhcccc
Q psy7731 62 IIAFGTLRKHHFG 74 (139)
Q Consensus 62 l~A~~~lrrhk~~ 74 (139)
++++..+||.|.+
T Consensus 18 ~~~~~~rRR~r~G 30 (130)
T PF12273_consen 18 LFYCHNRRRRRRG 30 (130)
T ss_pred HHHHHHHHHhhcC
Confidence 3344455554433
No 18
>PF07950 DUF1691: Protein of unknown function (DUF1691); InterPro: IPR012472 This family of fungal proteins is uncharacterised. Each protein contains two copies of this region.
Probab=27.45 E-value=1.8e+02 Score=20.87 Aligned_cols=36 Identities=14% Similarity=-0.067 Sum_probs=24.7
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy7731 35 LTTFAEMWWQIFLWALFSSIFVHTTAAIIAFGTLRK 70 (139)
Q Consensus 35 L~~~~diW~ft~lWtLis~~~~h~~agl~A~~~lrr 70 (139)
.++-.++.-..-+=.|+..+..|..+|+.-....++
T Consensus 33 ~~~~~p~~~~~~~~~Lv~~~~~Hv~sG~a~~~~~~~ 68 (110)
T PF07950_consen 33 GYQSSPVFGILEYLLLVGSGVYHVVSGIALRLGRRS 68 (110)
T ss_pred HHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444556667888999999999988877444
No 19
>PF10166 DUF2368: Uncharacterised conserved protein (DUF2368); InterPro: IPR019319 This family is conserved from nematodes to humans. The function is not known.
Probab=27.24 E-value=1.6e+02 Score=22.50 Aligned_cols=32 Identities=19% Similarity=0.148 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc-ccchHHHH
Q psy7731 45 IFLWALFSSIFVHTTAAIIAFGTLRKHH-FGKYCPIF 80 (139)
Q Consensus 45 t~lWtLis~~~~h~~agl~A~~~lrrhk-~~~~ipi~ 80 (139)
-+.| ++.++..+++.......||| -.-++|++
T Consensus 49 ~~~w----~~~f~~l~~~~~~~~~~k~K~~~~l~Plv 81 (131)
T PF10166_consen 49 LFKW----FASFYALAAVGLIAGAIKRKNPLFLIPLV 81 (131)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHhccCcchhhhHH
Confidence 4566 55666655555555544444 23334444
No 20
>PRK10907 intramembrane serine protease GlpG; Provisional
Probab=26.85 E-value=1.7e+02 Score=24.78 Aligned_cols=12 Identities=33% Similarity=0.908 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHH
Q psy7731 47 LWALFSSIFVHT 58 (139)
Q Consensus 47 lWtLis~~~~h~ 58 (139)
+|.++++.++|.
T Consensus 135 ~WRl~T~~flH~ 146 (276)
T PRK10907 135 LWRYFTHALLHF 146 (276)
T ss_pred cHHHHhHHHHhC
Confidence 478889988886
No 21
>PF14019 DUF4235: Protein of unknown function (DUF4235)
Probab=25.43 E-value=2.3e+02 Score=19.43 Aligned_cols=47 Identities=13% Similarity=0.152 Sum_probs=36.2
Q ss_pred HHHhHhhHHHHHHHHHHHHHHHHhCC----------ccchHHHHHHHHHHHHHHHHH
Q psy7731 83 IMGVFPPLTSGIISSAMIAMVYSCAE----------MSMAPVYAMFWGVGQTVLSAA 129 (139)
Q Consensus 83 l~G~l~~l~~G~Itg~~Ia~VY~Ag~----------~~Mstwip~~wGv~qtl~~ii 129 (139)
++|...++.+|.+.+-++..+++... -+.+..+.+.|++.|-.+.-+
T Consensus 3 ~~~~~~~~~ag~~a~k~~~~~W~~~tg~~~P~~~~d~~~~~~e~l~~Aaisgav~av 59 (78)
T PF14019_consen 3 PVGLAAGLAAGFLAGKVFEQVWKKVTGREPPKDPDDPDRSLREALAFAAISGAVFAV 59 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence 46778888899999999999997643 334558999999999876544
No 22
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=24.63 E-value=69 Score=24.17 Aligned_cols=17 Identities=12% Similarity=0.239 Sum_probs=7.7
Q ss_pred HHhHhhHHHHHHHHHHH
Q psy7731 84 MGVFPPLTSGIISSAMI 100 (139)
Q Consensus 84 ~G~l~~l~~G~Itg~~I 100 (139)
+|.+.|.+.|+++++++
T Consensus 9 ~G~liGgiiGa~aaLL~ 25 (115)
T COG4980 9 FGILIGGIIGAAAALLF 25 (115)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44444444444444443
No 23
>PRK11588 hypothetical protein; Provisional
Probab=24.31 E-value=2e+02 Score=26.74 Aligned_cols=86 Identities=9% Similarity=0.113 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhccccchHHHHHHHHHhHhhHHHH---------------------HH
Q psy7731 40 EMWWQIFLWALFSSIFVHT---TAAIIAFGTLRKHHFGKYCPIFILIMGVFPPLTSG---------------------II 95 (139)
Q Consensus 40 diW~ft~lWtLis~~~~h~---~agl~A~~~lrrhk~~~~ipi~yll~G~l~~l~~G---------------------~I 95 (139)
|+=.|++.---.+...-+. =+|+-+...+-|+|-..++|++..+++......+- .+
T Consensus 111 ~ii~filiiGG~f~vi~~TGAi~~~i~~l~~k~~~~~~llIpil~~lFsl~G~~~G~~Ee~i~f~pi~v~l~~alGyD~i 190 (506)
T PRK11588 111 GIIMFMLVIGGAFGIVMRTGTIDNGILALIRKTRGNEILFIPVLFILFSLGGAVFGMGEEAIAFAIIIAPLMVRLGYDSI 190 (506)
T ss_pred ceeehhhHHhhHHHHHHHhchHHHHHHHHHHHhCCCcEEeHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcHH
Confidence 4544544433333333332 23333333333455445678877777765544321 34
Q ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHHH
Q psy7731 96 SSAMIAMVYSCAEMSMAPVYAMFWGVGQTV 125 (139)
Q Consensus 96 tg~~Ia~VY~Ag~~~Mstwip~~wGv~qtl 125 (139)
+|+.+..+=...+|.-|+.-|+.=|++|.+
T Consensus 191 vg~ai~~lg~~iGf~~s~~NPftvgIAQ~i 220 (506)
T PRK11588 191 TTVLVTYVATQIGFATSWMNPFSVAIAQGI 220 (506)
T ss_pred HHHHHHHHHhhhhhcccccCccHHHHHHHh
Confidence 555555555567888889999999999975
No 24
>PRK04032 hypothetical protein; Provisional
Probab=23.18 E-value=2.7e+02 Score=21.99 Aligned_cols=17 Identities=18% Similarity=0.462 Sum_probs=7.1
Q ss_pred hhHHHHHHHHHHHHHHH
Q psy7731 88 PPLTSGIISSAMIAMVY 104 (139)
Q Consensus 88 ~~l~~G~Itg~~Ia~VY 104 (139)
||+++|.+.+.+.+.+|
T Consensus 40 EG~iGGv~~~~l~~~~~ 56 (159)
T PRK04032 40 RGLIGGILFGTLVGLIQ 56 (159)
T ss_pred HHhHHHHHHHHHHHHHH
Confidence 34444444444444444
No 25
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=22.81 E-value=3.4e+02 Score=25.19 Aligned_cols=26 Identities=8% Similarity=0.253 Sum_probs=16.7
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHH
Q psy7731 78 PIFILIMGVFPPLTSGIISSAMIAMV 103 (139)
Q Consensus 78 pi~yll~G~l~~l~~G~Itg~~Ia~V 103 (139)
.++.-++|++.|+..|...+.+++..
T Consensus 576 s~~l~~~GGiiGi~lg~~~~~~~~~~ 601 (648)
T PRK10535 576 AVLVCLVGGALGITLSLLIAFTLQLF 601 (648)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777776666665543
No 26
>cd03497 SQR_TypeB_1_TM Succinate:quinone oxidoreductase (SQR) Type B subfamily 1, transmembrane subunit; composed of proteins similar to Bacillus subtilis SQR. SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Bacillus subtilis SQR reduces low potential quinones such as menaquinone. SQR is also called succinate dehydrogenase (Sdh) or Complex II and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type B as they contain one transmembrane subunit and two heme groups. The heme and quinone binding sites reside on the transmembrane subunit. The transmembrane subunit of Bacillus subtilis SQR is also called Sdh cytochrome b558 subunit. The structural arrangement allows efficient electron transfer between the catalytic subunit, through iron-sulfur centers,
Probab=22.26 E-value=2.4e+02 Score=22.56 Aligned_cols=32 Identities=16% Similarity=0.114 Sum_probs=27.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7731 36 TTFAEMWWQIFLWALFSSIFVHTTAAIIAFGT 67 (139)
Q Consensus 36 ~~~~diW~ft~lWtLis~~~~h~~agl~A~~~ 67 (139)
+.+.+-|...+|--+.....+|+.-|+...+.
T Consensus 140 ~~f~~~~~~~~Yvv~~~al~~Hl~hGl~s~~~ 171 (207)
T cd03497 140 NALASPLMLIFYIIGVLAAVFHFANGLWTFLI 171 (207)
T ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888899999999999999999998876
No 27
>COG1108 ZnuB ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]
Probab=20.38 E-value=5.3e+02 Score=21.82 Aligned_cols=89 Identities=11% Similarity=0.203 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hhhccccc-h--------HHHHHH--HHHhHhhHHHHHHHHHHHHHHHHhCCccch
Q psy7731 45 IFLWALFSSIFVHTTAAIIAFGT-LRKHHFGK-Y--------CPIFIL--IMGVFPPLTSGIISSAMIAMVYSCAEMSMA 112 (139)
Q Consensus 45 t~lWtLis~~~~h~~agl~A~~~-lrrhk~~~-~--------ipi~yl--l~G~l~~l~~G~Itg~~Ia~VY~Ag~~~Ms 112 (139)
.+.+.+.....+-..+|++-.+. +||+.+.- . +-+-++ .--.+.++..|.+.+..+..+.+....+..
T Consensus 13 f~~~alla~~li~~~~~~lG~flvlRr~sl~gdalsHa~L~Gval~~ll~~~~~~~a~~~~l~~a~~i~~l~~~~~~~~D 92 (274)
T COG1108 13 FMQNALLASLLIGIACGLLGTFLVLRRMSLMGDALSHAVLPGVALGFLLGINPLLGAFIFGLLAALLIGYLRRRSKLKED 92 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccchHH
Confidence 45688888888888888877665 55554221 0 222222 344566777788888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q psy7731 113 PVYAMFWGVGQTVLSAAVGFT 133 (139)
Q Consensus 113 twip~~wGv~qtl~~ii~SFs 133 (139)
+-++.++...-.+=.++.|+.
T Consensus 93 ~aigiv~s~~~alGlvl~s~~ 113 (274)
T COG1108 93 TAIGIVFSSGLALGLVLLSLV 113 (274)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 999999998888877777764
No 28
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=20.31 E-value=7e+02 Score=23.13 Aligned_cols=23 Identities=9% Similarity=-0.117 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy7731 45 IFLWALFSSIFVHTTAAIIAFGT 67 (139)
Q Consensus 45 t~lWtLis~~~~h~~agl~A~~~ 67 (139)
+.+-.-+..+++|+..|+.--+.
T Consensus 444 ~~l~lsl~iGvi~i~~g~~l~~~ 466 (646)
T PRK05771 444 TILIISLLIGVIHLFLGLLLGFI 466 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666778899999888776655
No 29
>PF04039 MnhB: Domain related to MnhB subunit of Na+/H+ antiporter; InterPro: IPR007182 This domain is found in a possible subunit of the Na+/H+ antiporter [, ] as well as in the bacterial NADH dehydrogenase subunit. Usually four transmembrane regions are found in this domain.
Probab=20.14 E-value=3.4e+02 Score=19.53 Aligned_cols=46 Identities=17% Similarity=0.290 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHHHHHHHhCCcc-----chHHHHHHHHHHHHHHHHHHhhhh
Q psy7731 88 PPLTSGIISSAMIAMVYSCAEMS-----MAPVYAMFWGVGQTVLSAAVGFTR 134 (139)
Q Consensus 88 ~~l~~G~Itg~~Ia~VY~Ag~~~-----Mstwip~~wGv~qtl~~ii~SFsr 134 (139)
.++.+|.+.+..+...|-+.+.+ -........+.+ .++.+......
T Consensus 32 GGFqgG~ila~a~il~~l~~g~~~~~~~~~~~~~~~~~~g-l~~~~~~~~~~ 82 (124)
T PF04039_consen 32 GGFQGGVILAAAFILLYLAFGIDAERKFPPWKLIALEGIG-LLIAIATGIGP 82 (124)
T ss_pred chHHHHHHHHHHHHHHHHhCCHHHHHHhccccHHHHHHHH-HHHHHHHHHHH
Confidence 35777888777777777777765 334444555666 44444444443
Done!