Query psy7731
Match_columns 139
No_of_seqs 106 out of 112
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 17:23:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7731.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7731hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k1a_A Integrin alpha-IIB; sin 24.2 1E+02 0.0034 18.4 3.6 31 77-110 8-38 (42)
2 3dcg_E Virion infectivity fact 23.3 29 0.001 20.8 1.0 14 12-25 18-31 (39)
3 2l8s_A Integrin alpha-1; trans 19.8 62 0.0021 20.5 2.1 30 78-110 8-37 (54)
4 2knc_A Integrin alpha-IIB; tra 19.1 85 0.0029 19.8 2.6 31 77-110 10-40 (54)
5 1q90_G Cytochrome B6F complex 17.4 49 0.0017 19.6 1.1 12 87-98 2-13 (37)
6 2jo5_A KIA7F; peptide, oligome 14.5 83 0.0028 17.0 1.5 14 98-111 10-23 (26)
7 1vf5_G Protein PET G; photosyn 12.4 52 0.0018 19.5 0.3 12 87-98 2-13 (37)
8 3hd7_B Syntaxin-1A; membrane p 12.4 79 0.0027 21.8 1.3 16 71-86 83-98 (109)
9 1izm_A Hypothetical protein HI 11.6 1.2E+02 0.004 22.3 2.1 24 93-122 28-51 (184)
10 2k1k_A Ephrin type-A receptor 11.5 1.7E+02 0.006 16.8 2.4 12 86-97 12-23 (38)
No 1
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=24.22 E-value=1e+02 Score=18.43 Aligned_cols=31 Identities=16% Similarity=0.426 Sum_probs=20.2
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHhCCcc
Q psy7731 77 CPIFILIMGVFPPLTSGIISSAMIAMVYSCAEMS 110 (139)
Q Consensus 77 ipi~yll~G~l~~l~~G~Itg~~Ia~VY~Ag~~~ 110 (139)
+|.-.++.+.+.|+. +-.+++...|+.|-|+
T Consensus 8 vp~wiIi~s~l~GLl---lL~li~~~LwK~GFFk 38 (42)
T 2k1a_A 8 IPIWWVLVGVLGGLL---LLTILVLAMWKVGFFK 38 (42)
T ss_dssp CCHHHHHHHHHHHHH---HHHHHHHHHHHTTTTC
T ss_pred cchHHHHHHHHHHHH---HHHHHHHHHHHcCccc
Confidence 345555555555544 4567888899999875
No 2
>3dcg_E Virion infectivity factor; HIV, VIF, AIDS, HOST-virus interaction, membrane, phosphoPro RNA-binding, UBL conjugation pathway; 2.40A {Human immunodeficiency virus type 1}
Probab=23.33 E-value=29 Score=20.81 Aligned_cols=14 Identities=29% Similarity=0.363 Sum_probs=11.5
Q ss_pred cccccCCCCchhhh
Q psy7731 12 KPVTTATILSSIAD 25 (139)
Q Consensus 12 ~~~~~tp~fpSl~~ 25 (139)
+|....||+||+..
T Consensus 18 ~pkk~kpPlPSv~k 31 (39)
T 3dcg_E 18 KPKQIKPPLPSVRK 31 (39)
T ss_pred ccCCCCCCCchhhH
Confidence 56778899999974
No 3
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=19.84 E-value=62 Score=20.52 Aligned_cols=30 Identities=13% Similarity=0.452 Sum_probs=19.1
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHhCCcc
Q psy7731 78 PIFILIMGVFPPLTSGIISSAMIAMVYSCAEMS 110 (139)
Q Consensus 78 pi~yll~G~l~~l~~G~Itg~~Ia~VY~Ag~~~ 110 (139)
|+-+++.+.+.|+. +-.+++...|+.|-|+
T Consensus 8 p~WiIi~svl~GLL---LL~Lii~~LwK~GFFK 37 (54)
T 2l8s_A 8 PLWVILLSAFAGLL---LLMLLILALWKIGFFK 37 (54)
T ss_dssp CTHHHHHHHHHHHH---HHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHH---HHHHHHHHHHHcCccc
Confidence 44455555555444 4567788889988764
No 4
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=19.09 E-value=85 Score=19.78 Aligned_cols=31 Identities=16% Similarity=0.426 Sum_probs=20.2
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHhCCcc
Q psy7731 77 CPIFILIMGVFPPLTSGIISSAMIAMVYSCAEMS 110 (139)
Q Consensus 77 ipi~yll~G~l~~l~~G~Itg~~Ia~VY~Ag~~~ 110 (139)
+|+-+++.+.+.|+. +-.+++...|+.|-|+
T Consensus 10 vp~wiIi~svl~GLl---lL~li~~~LwK~GFFk 40 (54)
T 2knc_A 10 IPIWWVLVGVLGGLL---LLTILVLAMWKVGFFK 40 (54)
T ss_dssp CCHHHHHHHHHHHHH---HHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHH---HHHHHHHHHHHcCccc
Confidence 455555555555554 4567788889988764
No 5
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=17.36 E-value=49 Score=19.60 Aligned_cols=12 Identities=33% Similarity=0.578 Sum_probs=6.4
Q ss_pred HhhHHHHHHHHH
Q psy7731 87 FPPLTSGIISSA 98 (139)
Q Consensus 87 l~~l~~G~Itg~ 98 (139)
+||+.+|.+.|+
T Consensus 2 vE~lL~GIVlGl 13 (37)
T 1q90_G 2 VEPLLCGIVLGL 13 (37)
T ss_dssp CCHHHHHHHHHH
T ss_pred CchhhhhHHHhh
Confidence 355555555553
No 6
>2jo5_A KIA7F; peptide, oligomer, prebiotic, de novo protein; NMR {Synthetic}
Probab=14.51 E-value=83 Score=16.99 Aligned_cols=14 Identities=14% Similarity=0.173 Sum_probs=11.3
Q ss_pred HHHHHHHHhCCccc
Q psy7731 98 AMIAMVYSCAEMSM 111 (139)
Q Consensus 98 ~~Ia~VY~Ag~~~M 111 (139)
-+|+++-+||+|..
T Consensus 10 kaiaaiikaggf~~ 23 (26)
T 2jo5_A 10 KAIAAIIKAGGFXX 23 (26)
T ss_pred HHHHHHHHcCCccc
Confidence 36789999999864
No 7
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=12.42 E-value=52 Score=19.51 Aligned_cols=12 Identities=25% Similarity=0.556 Sum_probs=2.6
Q ss_pred HhhHHHHHHHHH
Q psy7731 87 FPPLTSGIISSA 98 (139)
Q Consensus 87 l~~l~~G~Itg~ 98 (139)
+||+.+|.+.|+
T Consensus 2 vEplL~GIVlGl 13 (37)
T 1vf5_G 2 VEPLLDGLVLGL 13 (37)
T ss_dssp -------CHHHH
T ss_pred CchhhhhHHHhh
Confidence 455566655553
No 8
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=12.36 E-value=79 Score=21.83 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=6.0
Q ss_pred ccccchHHHHHHHHHh
Q psy7731 71 HHFGKYCPIFILIMGV 86 (139)
Q Consensus 71 hk~~~~ipi~yll~G~ 86 (139)
+|..|++-+..++.+.
T Consensus 83 rkk~~i~l~~~~i~~~ 98 (109)
T 3hd7_B 83 RRKKIMIIICCVILGI 98 (109)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cCcceehHHHHHHHHH
Confidence 3433433333333333
No 9
>1izm_A Hypothetical protein HI0817; structural genomics, YGFB, structure 2 function project, S2F, unknown function; 1.95A {Haemophilus influenzae} SCOP: a.199.1.1
Probab=11.64 E-value=1.2e+02 Score=22.33 Aligned_cols=24 Identities=8% Similarity=0.234 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhCCccchHHHHHHHHHH
Q psy7731 93 GIISSAMIAMVYSCAEMSMAPVYAMFWGVG 122 (139)
Q Consensus 93 G~Itg~~Ia~VY~Ag~~~Mstwip~~wGv~ 122 (139)
|.++|++.+. ..-+.|.|.+||-.
T Consensus 28 G~Ltgll~gp------~~~~~Wl~~l~~~~ 51 (184)
T 1izm_A 28 GFLSGLLCGG------LKDQSWLPLLYQFS 51 (184)
T ss_dssp HHHHHHHHTT------CCSTTHHHHHHHHH
T ss_pred HHHHHHHhCC------CChHHHHHHHHhhc
Confidence 4444555444 56778999999864
No 10
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=11.51 E-value=1.7e+02 Score=16.80 Aligned_cols=12 Identities=8% Similarity=0.182 Sum_probs=5.1
Q ss_pred hHhhHHHHHHHH
Q psy7731 86 VFPPLTSGIISS 97 (139)
Q Consensus 86 ~l~~l~~G~Itg 97 (139)
.+.+++.|++.|
T Consensus 12 aIAGiVvG~v~g 23 (38)
T 2k1k_A 12 EIVAVIFGLLLG 23 (38)
T ss_dssp HHHHHHHHHHHH
T ss_pred ceeeeehHHHHH
Confidence 334444444433
Done!