Query psy7731
Match_columns 139
No_of_seqs 106 out of 112
Neff 4.5
Searched_HMMs 13730
Date Fri Aug 16 17:23:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7731.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7731hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74d2 f.23.12.1 (D:12-45) IS 62.4 2.8 0.00021 23.0 2.5 20 88-107 9-28 (34)
2 d2bs2c1 f.21.2.1 (C:1-254) Fum 36.4 17 0.0012 27.1 4.0 32 36-67 161-192 (254)
3 d2nr9a1 f.51.1.1 (A:4-192) Glp 35.6 14 0.001 25.3 3.3 15 77-91 86-100 (189)
4 d2r6gf2 f.58.1.1 (F:261-504) M 20.4 1.3E+02 0.0092 20.7 7.0 36 36-71 15-50 (244)
5 d1q90g_ f.23.26.1 (G:) PetG su 16.7 25 0.0018 18.5 1.1 21 87-107 2-25 (30)
6 d1lgha_ f.3.1.1 (A:) Light-har 13.7 80 0.0058 18.3 3.0 18 110-127 14-31 (56)
7 d3d31c1 f.58.1.1 (C:13-260) Su 10.7 2.3E+02 0.017 18.9 6.1 28 43-70 50-77 (248)
8 d1u19a_ f.13.1.2 (A:) Rhodopsi 7.6 3.2E+02 0.023 18.3 13.1 25 32-56 25-49 (348)
9 d1otsa_ f.20.1.1 (A:) Clc chlo 6.9 3E+02 0.022 20.7 5.1 26 78-103 16-41 (444)
10 d1v54c_ f.25.1.1 (C:) Mitochon 6.4 3.1E+02 0.023 19.5 4.7 41 36-76 184-225 (259)
No 1
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=62.38 E-value=2.8 Score=23.01 Aligned_cols=20 Identities=15% Similarity=0.338 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHHHhC
Q psy7731 88 PPLTSGIISSAMIAMVYSCA 107 (139)
Q Consensus 88 ~~l~~G~Itg~~Ia~VY~Ag 107 (139)
.=++.|+++|.++++.|-.-
T Consensus 9 nlltfgt~tg~alg~lypvv 28 (34)
T d2e74d2 9 NLLAFGTVTGVALGALYPLV 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHhhhhhHH
Confidence 34678999999999999643
No 2
>d2bs2c1 f.21.2.1 (C:1-254) Fumarate reductase respiratory complex cytochrome b subunit, FrdC {Wolinella succinogenes [TaxId: 844]}
Probab=36.40 E-value=17 Score=27.05 Aligned_cols=32 Identities=9% Similarity=0.242 Sum_probs=27.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7731 36 TTFAEMWWQIFLWALFSSIFVHTTAAIIAFGT 67 (139)
Q Consensus 36 ~~~~diW~ft~lWtLis~~~~h~~agl~A~~~ 67 (139)
+.+.+-|...+|--+..-..+|+.-|++.++.
T Consensus 161 ~~~~~~~~~~fY~l~l~av~lH~~~Gl~s~~~ 192 (254)
T d2bs2c1 161 FRMVSEWMWPLYLVLLFAVELHGSVGLYRLAV 192 (254)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhChhHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 44667788889999999999999999999874
No 3
>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}
Probab=35.55 E-value=14 Score=25.34 Aligned_cols=15 Identities=0% Similarity=0.095 Sum_probs=9.4
Q ss_pred HHHHHHHHHhHhhHH
Q psy7731 77 CPIFILIMGVFPPLT 91 (139)
Q Consensus 77 ipi~yll~G~l~~l~ 91 (139)
...+|++.|...++.
T Consensus 86 ~~~~~~~~~~~~~l~ 100 (189)
T d2nr9a1 86 LLMLYVVASAITGYV 100 (189)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHH
Confidence 445677666666665
No 4
>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=20.39 E-value=1.3e+02 Score=20.68 Aligned_cols=36 Identities=8% Similarity=0.187 Sum_probs=26.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy7731 36 TTFAEMWWQIFLWALFSSIFVHTTAAIIAFGTLRKH 71 (139)
Q Consensus 36 ~~~~diW~ft~lWtLis~~~~h~~agl~A~~~lrrh 71 (139)
..+...-+.++.++++.-.+.-.++-++|....||.
T Consensus 15 ~~~~~~l~~t~~~~~~~~~~~~~~~~~lA~~l~~~~ 50 (244)
T d2r6gf2 15 KPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEA 50 (244)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 345556667888888888777777888888876654
No 5
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=16.68 E-value=25 Score=18.49 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=11.8
Q ss_pred HhhHHHHHHHHHH---HHHHHHhC
Q psy7731 87 FPPLTSGIISSAM---IAMVYSCA 107 (139)
Q Consensus 87 l~~l~~G~Itg~~---Ia~VY~Ag 107 (139)
+|++.+|.+.|++ +++.+.++
T Consensus 2 vE~ll~GivlGlipiTl~Glfv~A 25 (30)
T d1q90g_ 2 VEPLLCGIVLGLVPVTIAGLFVTA 25 (30)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHhHHHhhHHHHHHHHHHHH
Confidence 4666777666643 45554443
No 6
>d1lgha_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=13.72 E-value=80 Score=18.26 Aligned_cols=18 Identities=17% Similarity=0.261 Sum_probs=13.6
Q ss_pred cchHHHHHHHHHHHHHHH
Q psy7731 110 SMAPVYAMFWGVGQTVLS 127 (139)
Q Consensus 110 ~Mstwip~~wGv~qtl~~ 127 (139)
+=|||.|.+|=+..++-.
T Consensus 14 npstwlpviwivatvvai 31 (56)
T d1lgha_ 14 NPSTWLPVIWIVATVVAI 31 (56)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred cCccchhhhHHHHHHHHH
Confidence 458999999988766543
No 7
>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter, permease protein {Methanosarcina acetivorans [TaxId: 2214]}
Probab=10.74 E-value=2.3e+02 Score=18.93 Aligned_cols=28 Identities=7% Similarity=0.071 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy7731 43 WQIFLWALFSSIFVHTTAAIIAFGTLRK 70 (139)
Q Consensus 43 ~ft~lWtLis~~~~h~~agl~A~~~lrr 70 (139)
..+++.+.++....-.++-..|....|+
T Consensus 50 ~~Sl~~a~~s~~i~~~lg~~~a~~~~~~ 77 (248)
T d3d31c1 50 FLSLYAGFLATLLALLLGAPTGYILARF 77 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3466666666665555666666665444
No 8
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.63 E-value=3.2e+02 Score=18.30 Aligned_cols=25 Identities=20% Similarity=0.158 Sum_probs=15.7
Q ss_pred cccccchhhHHHHHHHHHHHHHHHH
Q psy7731 32 YCTLTTFAEMWWQIFLWALFSSIFV 56 (139)
Q Consensus 32 ~~~L~~~~diW~ft~lWtLis~~~~ 56 (139)
+.+.+|..|-|.+.++=.+....++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~ii~v 49 (348)
T d1u19a_ 25 EAPQYYLAEPWQFSMLAAYMFLLIM 49 (348)
T ss_dssp TSCCTTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCccccccHHHHHHHHHHHHHHHH
Confidence 3567888888887665444444333
No 9
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=6.95 E-value=3e+02 Score=20.69 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=15.2
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHH
Q psy7731 78 PIFILIMGVFPPLTSGIISSAMIAMV 103 (139)
Q Consensus 78 pi~yll~G~l~~l~~G~Itg~~Ia~V 103 (139)
++..++++.+.|+++|.+..+.--.+
T Consensus 16 ~l~~~~la~liGi~~gl~~~~~~~~i 41 (444)
T d1otsa_ 16 PLAILFMAAVVGTLVGLAAVAFDKGV 41 (444)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666655544333
No 10
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.44 E-value=3.1e+02 Score=19.48 Aligned_cols=41 Identities=5% Similarity=-0.092 Sum_probs=0.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhccccch
Q psy7731 36 TTFAEMWWQIFLWALFSSIFVHTTAAIIAFGT-LRKHHFGKY 76 (139)
Q Consensus 36 ~~~~diW~ft~lWtLis~~~~h~~agl~A~~~-lrrhk~~~~ 76 (139)
.+..|=-+..+++++...-+.|.+.|++.... ..|.+.+++
T Consensus 184 ~~~~~~~~gS~ff~lTG~Hg~HVi~G~i~l~~~~~r~~~~~~ 225 (259)
T d1v54c_ 184 FTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHF 225 (259)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Done!