RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7731
(139 letters)
>gnl|CDD|150812 pfam10190, Tmemb_170, Putative transmembrane protein 170. Tmem170
is a family of putative transmembrane proteins conserved
from nematodes to humans. The protein is only of
approximately 130 amino acids in length. The function is
unknown.
Length = 105
Score = 126 bits (319), Expect = 6e-39
Identities = 65/105 (61%), Positives = 81/105 (77%)
Query: 35 LTTFAEMWWQIFLWALFSSIFVHTTAAIIAFGTLRKHHFGKYCPIFILIMGVFPPLTSGI 94
L TF+EMW+ +FLWALFSS+FVH A ++AF TLRKH FG++ IFIL+MGV PLT G+
Sbjct: 1 LCTFSEMWYHVFLWALFSSLFVHIAAGLLAFVTLRKHKFGRFFSIFILVMGVLSPLTGGV 60
Query: 95 ISSAMIAMVYSCAEMSMAPVYAMFWGVGQTVLSAAVGFTRILATL 139
I+SA IA VY A M+P+ A+ WGVGQT+LS + FTRILATL
Sbjct: 61 ITSAAIAGVYRAAGKPMSPIEALVWGVGQTILSLCISFTRILATL 105
>gnl|CDD|129428 TIGR00328, flhB, flagellar biosynthetic protein FlhB. FlhB and its
functionally equivalent orthologs, from among a larger
superfamily of proteins involved in type III protein
export systems, are specifically involved in flagellar
protein export. The seed members are restricted and the
trusted cutoff is set high such that the proteins
gathered by this model play roles specifically related
to flagellar structures. Full-length homologs scoring
below the trusted cutoff are involved in peptide export
but not necessarily in the creation of flagella
[Cellular processes, Chemotaxis and motility].
Length = 347
Score = 29.9 bits (68), Expect = 0.37
Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 8/94 (8%)
Query: 6 GSVIKSKPVTTATILSSIADVLSFANYCTLTTFAEMWWQIFLWALFSSIFVHTTAAIIAF 65
G+V KS+ V +A +L + L F + FL S I + I F
Sbjct: 18 GNVPKSREVNSAAVLLAGVLSLLFFGDGLADLL-VVLMSFFLSFETSDILNLGSLVGIFF 76
Query: 66 GTLRKHHFGKYCPIFILIMGVFPPLTSGIISSAM 99
++R+ + +L+ L G++S+
Sbjct: 77 QSIRE-------VLLLLLPIFVLLLVVGVLSNIA 103
>gnl|CDD|240482 cd12902, SPRY_PRY_RNF135, PRY/SPRY domain in RING finger protein
RNF135. This domain, consisting of the distinct
N-terminal PRY subdomain followed by the SPRY subdomain,
is found at the C-terminus of the RING finger protein
RNF135 (also known as Riplet/RNF135), which
ubiquitinates RIG-I (retinoic acid-inducible gene-I) to
promote interferon-beta induction during the early phase
of viral infection. Normally, RIG-I is activated by
TRIM25 in response to viral infection, leading to
activation of the RIG-I signaling pathway, thus
resulting in type I interferon production to limit viral
replication. However, RNF135, consisting of an
N-terminal RING finger domain, C-terminal SPRY and PRY
motifs and showing sequence similarity to TRIM25, acts
as an alternative factor that promotes RIG-I activation
independent of TRIM25.
Length = 168
Score = 27.9 bits (62), Expect = 1.3
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 74 GKYCPIFILIMGVFPPLTSGIISSAMIA----MVYSCAEMSMAPVYAMFW 119
GK P ++GVF L +G +S + +++ +P+Y FW
Sbjct: 109 GKDKP---SVVGVFLDLENGTLSFYSVDNQERLLHEFEVSFSSPLYPAFW 155
>gnl|CDD|234898 PRK01100, PRK01100, putative accessory gene regulator protein;
Provisional.
Length = 210
Score = 27.4 bits (61), Expect = 2.0
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 45 IFLWALFSSIFVHTTAAIIAFGTLRKHHFGKY------CPIFILIMGVFPPLTSGIISS 97
++L AL + + + T ++F LR++ FG + C + L M V I S
Sbjct: 53 VYLIALVTGLLLQTVTVHLSFLWLRRYSFGLHATNSINCTLISLTMFVLGAFIFQNIPS 111
>gnl|CDD|234400 TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa. This
model represents the N-terminal domain or EccCa subunit
of the type VII secretion protein EccC as found in the
Actinobacteria. Type VII secretion is defined more
broadly as including secretion systems for ESAT-6-like
proteins in the Firmicutes as well as in the
Actinobacteria, but this family does not show close
homologs in the Firmicutes [Protein fate, Protein and
peptide secretion and trafficking].
Length = 661
Score = 27.2 bits (61), Expect = 3.0
Identities = 5/41 (12%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 78 PIFILIMGVFPPLTSGIISSAMIAMVYSCAEMSMAPVYAMF 118
+ ++ P+ + M+ M+++ P++ +F
Sbjct: 2 SVLQKLL----PVVMVVAMVGMVVMMFASGGRQRNPMFLIF 38
>gnl|CDD|235569 PRK05702, flhB, flagellar biosynthesis protein FlhB; Reviewed.
Length = 359
Score = 26.7 bits (60), Expect = 4.6
Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 8/94 (8%)
Query: 6 GSVIKSKPVTTATILSSIADVLSFANYCTLTTFAEMWWQIFLWALFSSIFVHTTAAIIAF 65
G V +S+ + TA L + VL F + M +F + I + F
Sbjct: 25 GQVPRSRELNTAASLLAGLVVLWFFGPSLARRLSGMLRALF--SFDREIIFDPNDVLSLF 82
Query: 66 GTLRKHHFGKYCPIFILIMGVFPPLTSGIISSAM 99
L PI +L++ +++ +
Sbjct: 83 LLLLLEALLALLPILLLLVLA------ALLAPVL 110
>gnl|CDD|212083 cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent dopamine
transporter 1; solute-binding domain. DAT1 (also called
DAT), is a plasma membrane transport protein that
functions at the dopaminergic synapses to transport
dopamine from the extracellular space back into the
presynaptic nerve terminal. Human DAT1 is encoded by the
SLC6A3 gene, and is expressed in the brain. DAT1 may
play a role in diseases or disorders related to
dopaminergic neurons, including attention-deficit
hyperactivity disorder (ADHD), Tourette syndrome,
Parkinson's disease, alcoholism, drug abuse,
schizophrenia, extraversion, and risky behavior. This
subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 555
Score = 26.8 bits (59), Expect = 5.0
Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 17/78 (21%)
Query: 41 MWWQIFLWALFSSIFVHTTAAIIAFGTLRKHHFGKYCPIFILIMGVFPPLTSGIISSAMI 100
++W++ W S F+ +++ T R +G Y +FP + M+
Sbjct: 459 LYWRL-CWKFVSPCFL-LFVVVVSIVTFRPPKYGSY---------IFPDWAN------MV 501
Query: 101 AMVYSCAEMSMAPVYAMF 118
+ + M+M P+YA++
Sbjct: 502 GWCLAISSMAMVPLYAIY 519
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 26.3 bits (59), Expect = 6.8
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Query: 98 AMIAMVYSCA----EMSMAPVYAMFWGVGQTVLSA 128
A+IA+ A E + PV F +GQ + SA
Sbjct: 278 ALIALFVFAALAAFEA-LMPVAGAFQHLGQVIASA 311
>gnl|CDD|217435 pfam03225, Viral_Hsp90, Viral heat shock protein Hsp90 homologue.
Length = 511
Score = 26.2 bits (58), Expect = 6.9
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 9/71 (12%)
Query: 9 IKSKPVTTATILSSIADVLSFANYCTLTTFAEMWWQIFLWAL---FSSIFVHTTAAIIAF 65
I +PV L + V +N +L + + + L F SI V+ + +
Sbjct: 316 ILDEPVLVGEYLRYVESVFEVSNSNSLPDKID----LLVTKLLLEFFSIKVNFSNPELDD 371
Query: 66 GTLRKHHFGKY 76
L FG+Y
Sbjct: 372 ALL--WVFGRY 380
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.331 0.137 0.439
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,931,621
Number of extensions: 625764
Number of successful extensions: 1171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1164
Number of HSP's successfully gapped: 126
Length of query: 139
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 52
Effective length of database: 7,078,804
Effective search space: 368097808
Effective search space used: 368097808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 54 (24.5 bits)