RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy7731
         (139 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.4 bits (68), Expect = 0.19
 Identities = 24/136 (17%), Positives = 46/136 (33%), Gaps = 31/136 (22%)

Query: 9   IKSKPVTTATI-----LSSIADVLS-FANYCT-------LTTFAEMWWQIFLWALFSSIF 55
            K  P  T         ++ A+++  F  Y +       +  F ++   + L   F + +
Sbjct: 38  NKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVL-NLCLTE-FENCY 95

Query: 56  -----VHTTAAIIAF---GTLRKHHFGKYCPIFILIMGVFPPLTSGIISSAMIAMVYSCA 107
                +H  AA +      TL K    +    +I    +         +SA+    +   
Sbjct: 96  LEGNDIHALAAKLLQENDTTLVKTK--ELIKNYITARIMAKRPFDKKSNSAL----FRAV 149

Query: 108 EMSMAPVYAMFWGVGQ 123
               A + A+F G GQ
Sbjct: 150 GEGNAQLVAIF-G-GQ 163



 Score = 29.6 bits (66), Expect = 0.33
 Identities = 12/82 (14%), Positives = 26/82 (31%), Gaps = 28/82 (34%)

Query: 73  FGKYCPIFILIMGVFPP--------LT---SGIISSAMIAMV------YSCAEMSMAPVY 115
              Y  +   ++G  P          T    G++++  IA        +     ++    
Sbjct: 246 LAHYV-VTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT--- 301

Query: 116 AMFW-GV------GQTVLSAAV 130
            +F+ GV        T L  ++
Sbjct: 302 VLFFIGVRCYEAYPNTSLPPSI 323



 Score = 28.1 bits (62), Expect = 1.00
 Identities = 7/20 (35%), Positives = 12/20 (60%), Gaps = 2/20 (10%)

Query: 16   TATILSSIADVLSFANYCTL 35
             A  L+S+ADV+S  +   +
Sbjct: 1768 AA--LASLADVMSIESLVEV 1785


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 29.1 bits (64), Expect = 0.47
 Identities = 4/17 (23%), Positives = 9/17 (52%), Gaps = 1/17 (5%)

Query: 114 VYAMFWGVGQTVLSAAV 130
           +  +  G G+T ++  V
Sbjct: 155 IDGVL-GSGKTWVALDV 170


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.331    0.137    0.439 

Gapped
Lambda     K      H
   0.267   0.0656    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,111,512
Number of extensions: 114789
Number of successful extensions: 300
Number of sequences better than 10.0: 1
Number of HSP's gapped: 299
Number of HSP's successfully gapped: 18
Length of query: 139
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 55
Effective length of database: 4,356,429
Effective search space: 239603595
Effective search space used: 239603595
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 52 (24.0 bits)