BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7734
(349 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A3S|A Chain A, Solution Structure And Dynamics Of Dna-Binding Domain Of
Myocyte Nuclear Factor
pdb|2D2W|A Chain A, Solution Structure And Dynamics Of The Dna-Binding Domain
Of Myocyte Nuclear Factor
Length = 101
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/52 (92%), Positives = 50/52 (96%)
Query: 103 NSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPGSEHKLIEQAFRRRRQRGV 154
NSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDP SE KL+EQAFR+RRQRGV
Sbjct: 49 NSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPASEAKLVEQAFRKRRQRGV 100
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/48 (83%), Positives = 46/48 (95%)
Query: 288 DSKPPYSYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRTADKGWQ 335
+SKPPYSYAQLIVQA++SA D+QLTLSGIY+ ITK+YPYYRTADKGWQ
Sbjct: 1 ESKPPYSYAQLIVQAISSAQDRQLTLSGIYAHITKHYPYYRTADKGWQ 48
>pdb|2C6Y|A Chain A, Crystal Structure Of Interleukin Enhancer-Binding Factor 1
Bound To Dna
pdb|2C6Y|B Chain B, Crystal Structure Of Interleukin Enhancer-Binding Factor 1
Bound To Dna
Length = 111
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 46/50 (92%), Positives = 47/50 (94%)
Query: 103 NSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPGSEHKLIEQAFRRRRQR 152
NSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDP SE KLIEQAFR+RR R
Sbjct: 62 NSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPASESKLIEQAFRKRRPR 111
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/48 (85%), Positives = 44/48 (91%)
Query: 288 DSKPPYSYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRTADKGWQ 335
DSKPPYSYAQLIVQA+ A DKQLTL+GIY+ ITKNYPYYRTADKGWQ
Sbjct: 14 DSKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQ 61
>pdb|1JXS|A Chain A, Solution Structure Of The Dna-Binding Domain Of
Interleukin Enhancer Binding Factor
Length = 98
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 46/50 (92%), Positives = 47/50 (94%)
Query: 103 NSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPGSEHKLIEQAFRRRRQR 152
NSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDP SE KLIEQAFR+RR R
Sbjct: 49 NSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPASESKLIEQAFRKRRPR 98
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/48 (85%), Positives = 44/48 (91%)
Query: 288 DSKPPYSYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRTADKGWQ 335
DSKPPYSYAQLIVQA+ A DKQLTL+GIY+ ITKNYPYYRTADKGWQ
Sbjct: 1 DSKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQ 48
>pdb|2HDC|A Chain A, Structure Of Transcription Factor GenesisDNA COMPLEX
Length = 97
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 35/50 (70%)
Query: 103 NSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPGSEHKLIEQAFRRRRQR 152
NSIRHNLSLN F+K+PR PGKG++W +DP SE +F RRR+R
Sbjct: 48 NSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKR 97
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 29/46 (63%)
Query: 290 KPPYSYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRTADKGWQ 335
KPPYSY LI A+ + K+LTLSGI FI+ +PYYR WQ
Sbjct: 2 KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQ 47
>pdb|1D5V|A Chain A, Solution Structure Of The Forkhead Domain Of The
Adipocyte- Transcription Factor Freac-11 (S12)
Length = 94
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 33/46 (71%)
Query: 290 KPPYSYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRTADKGWQ 335
KPPYSY LI A+ +A +K++TL+GIY FI +P+YR +GWQ
Sbjct: 4 KPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQ 49
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 32/44 (72%)
Query: 103 NSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPGSEHKLIEQAF 146
NSIRHNLSLN F+KVPR ++PGKGS+W +DP S + +F
Sbjct: 50 NSIRHNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 93
>pdb|1KQ8|A Chain A, Solution Structure Of Winged Helix Protein Hfh-1
Length = 100
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 103 NSIRHNLSLNRYFIKVPRSQEEP-GKGSFWRIDPGSEHKLIEQAFRRRRQR 152
NS+RHNLSLN F+KV R P GK ++W ++P SE+ + FRRRR R
Sbjct: 48 NSVRHNLSLNDCFVKVLRDPSRPWGKDNYWMLNPNSEYTFADGVFRRRRYR 98
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 290 KPPYSYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRTADKGWQ 335
KPPYSY LI A+ + +LTL+ I ++ +P++R + GW+
Sbjct: 2 KPPYSYIALITMAIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWR 47
>pdb|2HFH|A Chain A, The Nmr Structures Of A Winged Helix Protein: Genesis, 20
Structures
Length = 109
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 28/36 (77%)
Query: 103 NSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPGSE 138
NSIRHNLSLN F+K+PR PGKG++W +DP SE
Sbjct: 49 NSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPQSE 84
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 29/46 (63%)
Query: 290 KPPYSYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRTADKGWQ 335
KPPYSY LI A+ + K+LTLSGI FI+ +PYYR WQ
Sbjct: 3 KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQ 48
>pdb|1VTN|C Chain C, Co-Crystal Structure Of The Hnf-3FORK HEAD DNA-Recognition
Motif Resembles Histone H5
Length = 102
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 34/50 (68%)
Query: 103 NSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPGSEHKLIEQAFRRRRQR 152
NSIRH+LS N F+KV RS ++PGKGS+W + P S + + RR++R
Sbjct: 49 NSIRHSLSFNDCFVKVARSPDKPGKGSYWALHPSSGNMFENGCYLRRQKR 98
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 29/47 (61%)
Query: 289 SKPPYSYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRTADKGWQ 335
+KPPYSY LI A+ A K LTLS IY +I +PYYR + WQ
Sbjct: 2 AKPPYSYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQ 48
>pdb|2A07|F Chain F, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|G Chain G, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|H Chain H, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|I Chain I, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|J Chain J, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|K Chain K, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2AS5|F Chain F, Structure Of The Dna Binding Domains Of Nfat And Foxp2
Bound Specifically To Dna.
pdb|2AS5|G Chain G, Structure Of The Dna Binding Domains Of Nfat And Foxp2
Bound Specifically To Dna
Length = 93
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 32/46 (69%)
Query: 290 KPPYSYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRTADKGWQ 335
+PP++YA LI QA+ + D+QLTL+ IYS+ T+ + Y+R W+
Sbjct: 3 RPPFTYATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWK 48
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Query: 103 NSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPGSEHK 140
N++RHNLSL++ F++V E KG+ W +D K
Sbjct: 49 NAVRHNLSLHKCFVRV-----ENVKGAVWTVDEVEYQK 81
>pdb|2KIU|A Chain A, Solution Structure And Backbone Dynamics Of The
Dna-Binding Domain Of Foxp1: Insight Into Its Domain
Swapping
Length = 87
Score = 49.3 bits (116), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 33/46 (71%)
Query: 290 KPPYSYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRTADKGWQ 335
+PP++YA LI QA+ + +KQLTL+ IY++ T+ +PY+R W+
Sbjct: 4 RPPFTYASLIRQAILESPEKQLTLNEIYNWFTRMFPYFRRNAATWK 49
Score = 35.0 bits (79), Expect = 0.055, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 13/48 (27%)
Query: 103 NSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPGSEHKLIEQAFRRRR 150
N++RHNLSL++YF++V E KG+ W +D E F++RR
Sbjct: 50 NAVRHNLSLHKYFVRV-----ENVKGAVWTVD--------EVEFQKRR 84
>pdb|3G73|A Chain A, Structure Of The Foxm1 Dna Binding
pdb|3G73|B Chain B, Structure Of The Foxm1 Dna Binding
Length = 142
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 290 KPPYSYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYR-TADKGWQ 335
+PPYSY +I A+ S K++TL IY++I ++PY++ A GW+
Sbjct: 18 RPPYSYMAMIQFAINSTERKRMTLKDIYTWIEDHFPYFKHIAKPGWK 64
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 103 NSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPGSEHKL-IEQAFR 147
NSIRHNLSL+ F+ R GK SFW I P + L ++Q F+
Sbjct: 65 NSIRHNLSLHDMFV---RETSANGKVSFWTIHPSANRYLTLDQVFK 107
>pdb|3CO7|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Dbe2 Dna
pdb|3CO7|F Chain F, Crystal Structure Of Foxo1 Dbd Bound To Dbe2 Dna
pdb|3COA|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Ire Dna
pdb|3COA|F Chain F, Crystal Structure Of Foxo1 Dbd Bound To Ire Dna
Length = 117
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 10/56 (17%)
Query: 294 SYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRTADKGWQVNYTYLDTTSVVAW 349
SYA LI +A+ S+ +K+LTLS IY ++ K+ PY++ DKG D+ S W
Sbjct: 15 SYADLITKAIESSAEKRLTLSQIYEWMVKSVPYFK--DKG--------DSNSSAGW 60
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 103 NSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDP 135
NSIRHNLSL+ FI+V E GK S+W ++P
Sbjct: 62 NSIRHNLSLHSKFIRVQ--NEGTGKSSWWMLNP 92
>pdb|1E17|A Chain A, Solution Structure Of The Dna Binding Domain Of The Human
Forkhead Transcription Factor Afx (Foxo4)
Length = 150
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 10/56 (17%)
Query: 294 SYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRTADKGWQVNYTYLDTTSVVAW 349
SYA+LI QA+ SA +K+LTL+ IY ++ + PY++ DKG D+ S W
Sbjct: 44 SYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFK--DKG--------DSNSSAGW 89
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 103 NSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPGSEHKLIEQAFRRR 149
NSIRHNLSL+ FIKV E GK S+W ++P E +A RRR
Sbjct: 91 NSIRHNLSLHSKFIKV--HNEATGKSSWWMLNP--EGGKSGKAPRRR 133
>pdb|3CO6|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Dbe1 Dna
Length = 100
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 10/56 (17%)
Query: 294 SYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRTADKGWQVNYTYLDTTSVVAW 349
SYA LI +A+ S+ +K+LTLS IY ++ K+ PY++ DKG D+ S W
Sbjct: 15 SYADLITKAIESSAEKRLTLSQIYEWMVKSVPYFK--DKG--------DSNSSAGW 60
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 103 NSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDP 135
NSIRHNLSL+ FI+V E GK S+W ++P
Sbjct: 62 NSIRHNLSLHSKFIRVQ--NEGTGKSSWWMLNP 92
>pdb|3L2C|A Chain A, Crystal Structure Of The Dna Binding Domain Of Foxo4 Bound
To Dna
Length = 110
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 10/56 (17%)
Query: 294 SYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRTADKGWQVNYTYLDTTSVVAW 349
SYA+LI QA+ SA +K+LTL+ IY ++ + PY++ DKG D+ S W
Sbjct: 28 SYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFK--DKG--------DSNSSAGW 73
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 103 NSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDP 135
NSIRHNLSL+ FIKV E GK S+W ++P
Sbjct: 75 NSIRHNLSLHSKFIKV--HNEATGKSSWWMLNP 105
>pdb|2K86|A Chain A, Solution Structure Of Foxo3a Forkhead Domain
Length = 103
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 10/56 (17%)
Query: 294 SYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRTADKGWQVNYTYLDTTSVVAW 349
SYA LI +A+ S+ DK+LTLS IY ++ + PY++ DKG D+ S W
Sbjct: 13 SYADLITRAIESSPDKRLTLSQIYEWMVRCVPYFK--DKG--------DSNSSAGW 58
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 103 NSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDP 135
NSIRHNLSL+ F++V E GK S+W I+P
Sbjct: 60 NSIRHNLSLHSRFMRV--QNEGTGKSSWWIINP 90
>pdb|2UZK|A Chain A, Crystal Structure Of The Human Foxo3a-Dbd Bound To Dna
pdb|2UZK|C Chain C, Crystal Structure Of The Human Foxo3a-Dbd Bound To Dna
Length = 97
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 10/56 (17%)
Query: 294 SYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRTADKGWQVNYTYLDTTSVVAW 349
SYA LI +A+ S+ DK+LTLS IY ++ + PY++ DKG D+ S W
Sbjct: 5 SYADLITRAIESSPDKRLTLSQIYEWMVRCVPYFK--DKG--------DSNSSAGW 50
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 103 NSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDP 135
NSIRHNLSL+ F++V E GK S+W I+P
Sbjct: 52 NSIRHNLSLHSRFMRV--QNEGTGKSSWWIINP 82
>pdb|3QRF|F Chain F, Structure Of A Domain-Swapped Foxp3 Dimer
pdb|3QRF|G Chain G, Structure Of A Domain-Swapped Foxp3 Dimer
pdb|3QRF|H Chain H, Structure Of A Domain-Swapped Foxp3 Dimer
pdb|3QRF|I Chain I, Structure Of A Domain-Swapped Foxp3 Dimer
Length = 82
Score = 41.2 bits (95), Expect = 9e-04, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 290 KPPYSYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRTADKGWQ 335
+PP++YA LI A+ A +KQ TL+ IY + T+ + ++R W+
Sbjct: 2 RPPFTYATLIRWAILEAPEKQRTLNEIYHWFTRMFAFFRNHPATWK 47
Score = 34.3 bits (77), Expect = 0.093, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 13/48 (27%)
Query: 103 NSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPGSEHKLIEQAFRRRR 150
N+IRHNLSL++ F++V E KG+ W +D E FR++R
Sbjct: 48 NAIRHNLSLHKCFVRV-----ESEKGAVWTVD--------ELEFRKKR 82
>pdb|1LGA|A Chain A, Crystallographic Refinement Of Lignin Peroxidase At 2
Angstroms
pdb|1LGA|B Chain B, Crystallographic Refinement Of Lignin Peroxidase At 2
Angstroms
pdb|1LLP|A Chain A, Lignin Peroxidase (isozyme H2) Pi 4.15
Length = 343
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 12/59 (20%)
Query: 118 VPRSQEEPGKGSFWRIDPGSEHKLIEQAFRRRRQRGVPCFRAPFGLSSRCTLRFPSTNI 176
+P S+ PG G F PG H IEQA C PF S TL P+T++
Sbjct: 289 IPLSKPIPGNGPFSFFPPGKSHSDIEQA----------CAETPF--PSLVTLPGPATSV 335
>pdb|3GQS|A Chain A, Crystal Structure Of The Fha Domain Of Ct664 Protein From
Chlamydia Trachomatis
pdb|3GQS|B Chain B, Crystal Structure Of The Fha Domain Of Ct664 Protein From
Chlamydia Trachomatis
Length = 106
Score = 28.1 bits (61), Expect = 7.6, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 74 ISRRHIEIFFEHPNFFMT--CNGKNGVFVDGNSIRHNLSLN 112
ISR+H +I + N + KNGV V+G I H +L+
Sbjct: 45 ISRQHAKIIIGNDNSVLIEDLGSKNGVIVEGRKIEHQSTLS 85
>pdb|1VEP|A Chain A, Crystal Structure Analysis Of Triple (T47mY164ET328N)
MALTOSE OF BACILLUS CEREUS BETA-Amylase At Ph 6.5
Length = 516
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 277 VNHMSLSISQDDSKPPYSYAQLIVQAVAS-AHDKQLTLSGIYSF-ITKNYPYYRTADKGW 334
VN L ++ S P YS + +VQ +A+ A++K + L+G + I Y R A+ +
Sbjct: 327 VNFTCLEMTDKGSYPEYSMPKTLVQNIATLANEKGIVLNGENALSIGNEEEYKRVAEMAF 386
Query: 335 QVNY 338
N+
Sbjct: 387 NYNF 390
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,626,712
Number of Sequences: 62578
Number of extensions: 355468
Number of successful extensions: 686
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 648
Number of HSP's gapped (non-prelim): 39
length of query: 349
length of database: 14,973,337
effective HSP length: 100
effective length of query: 249
effective length of database: 8,715,537
effective search space: 2170168713
effective search space used: 2170168713
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)