Query         psy7734
Match_columns 349
No_of_seqs    303 out of 1330
Neff          6.5 
Searched_HMMs 46136
Date          Fri Aug 16 17:26:37 2013
Command       hhsearch -i /work/01045/syshi/Psyhhblits/psy7734.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7734hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 cd00059 FH Forkhead (FH), also  99.9 3.3E-28 7.1E-33  189.7   5.1   59  290-348     1-59  (78)
  2 COG5025 Transcription factor o  99.9 1.8E-26 3.9E-31  237.6  10.0  287   32-348    70-395 (610)
  3 smart00339 FH FORKHEAD. FORKHE  99.9 1.6E-26 3.5E-31  184.7   4.7   59  290-348     1-59  (89)
  4 PF00250 Fork_head:  Fork head   99.9 2.5E-26 5.4E-31  186.2   0.6   60  290-349     1-60  (96)
  5 KOG3563|consensus               99.8 3.2E-22   7E-27  190.8   2.8   70  279-348   162-231 (454)
  6 KOG3562|consensus               99.8 1.5E-20 3.3E-25  169.3   2.0   64  285-348     8-71  (277)
  7 KOG2294|consensus               99.8 3.8E-21 8.3E-26  194.2  -2.3   63  286-348   126-190 (454)
  8 KOG4385|consensus               99.7 2.7E-19 5.8E-24  176.3   2.1   64  285-348   363-426 (581)
  9 KOG3562|consensus               99.7 1.4E-17   3E-22  150.3  -0.1   98   40-153    12-109 (277)
 10 KOG3563|consensus               99.6 5.1E-17 1.1E-21  155.5  -4.2   97   41-153   173-269 (454)
 11 KOG2294|consensus               99.6 6.5E-16 1.4E-20  156.1   2.1   95   41-152   130-228 (454)
 12 cd00059 FH Forkhead (FH), also  99.5 3.3E-15 7.2E-20  116.6   2.6   68   53-134    10-78  (78)
 13 PF00250 Fork_head:  Fork head   99.5 5.4E-16 1.2E-20  125.8  -2.1   93   43-152     3-96  (96)
 14 smart00339 FH FORKHEAD. FORKHE  99.5 1.3E-14 2.8E-19  116.1   2.3   70   58-141    16-85  (89)
 15 KOG2293|consensus               99.2 1.8E-11 3.9E-16  123.1   3.8  100   11-110   408-511 (547)
 16 COG5025 Transcription factor o  98.7 1.8E-09 3.9E-14  112.4  -2.4   59  288-346    84-142 (610)
 17 PF00498 FHA:  FHA domain;  Int  98.2 2.2E-06 4.7E-11   64.2   4.7   51   53-107     1-53  (68)
 18 smart00240 FHA Forkhead associ  98.0 7.8E-06 1.7E-10   57.7   3.7   50   53-105     1-52  (52)
 19 cd00060 FHA Forkhead associate  97.9   2E-05 4.3E-10   62.6   5.9   62   42-106    12-76  (102)
 20 KOG4385|consensus               97.7 8.1E-07 1.8E-11   88.9  -7.2   73   43-136   370-442 (581)
 21 TIGR03354 VI_FHA type VI secre  97.1 0.00072 1.6E-08   68.1   5.3   62   42-105    15-78  (396)
 22 COG1716 FOG: FHA domain [Signa  96.8  0.0015 3.2E-08   58.3   4.7   58   46-107    84-142 (191)
 23 COG3456 Predicted component of  95.8  0.0077 1.7E-07   60.4   3.4   64   45-110    20-83  (430)
 24 PLN02927 antheraxanthin epoxid  95.7   0.011 2.4E-07   63.3   4.4   53   49-104   555-612 (668)
 25 PF00538 Linker_histone:  linke  92.2    0.16 3.5E-06   39.2   3.3   33  294-326     4-37  (77)
 26 smart00526 H15 Domain in histo  91.6    0.37 8.1E-06   35.9   4.6   32  294-325     6-38  (66)
 27 cd00073 H15 linker histone 1 a  86.1     1.1 2.3E-05   35.6   3.9   34  294-327     6-40  (88)
 28 KOG4012|consensus               68.1     5.7 0.00012   37.6   3.5   38  292-329    44-82  (243)
 29 KOG0245|consensus               50.0      32  0.0007   38.9   5.8   63   44-107   470-534 (1221)
 30 PF05066 HARE-HTH:  HB1, ASXL,   47.2      14 0.00031   27.7   2.0   45  293-339     1-45  (72)
 31 COG2958 Uncharacterized protei  39.2      29 0.00062   33.3   3.0   32  294-326     6-37  (307)
 32 PF10264 Stork_head:  Winged he  36.8      49  0.0011   26.1   3.5   34  295-328    12-47  (80)
 33 PF12872 OST-HTH:  OST-HTH/LOTU  34.5      34 0.00074   25.3   2.3   41  295-335     6-48  (74)
 34 KOG1881|consensus               26.9      78  0.0017   34.6   4.1   53   50-106   176-240 (793)
 35 KOG0615|consensus               22.3      56  0.0012   33.6   2.0   32  296-332   414-445 (475)

No 1  
>cd00059 FH Forkhead (FH), also known as a "winged helix".  FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as monomers, are also found in the Hepatocyte nuclear factor (HNF) proteins, which provide tissue-specific gene regulation. The structure contains 2 flexible loops or "wings" in the C-terminal region, hence the term winged helix.
Probab=99.94  E-value=3.3e-28  Score=189.70  Aligned_cols=59  Identities=44%  Similarity=0.774  Sum_probs=58.4

Q ss_pred             CCCCCHHHHHHHHHHcCCCCCcCHHHHHHHHhccCCCcccCCCCCcccchhhhccCccc
Q psy7734         290 KPPYSYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRTADKGWQVNYTYLDTTSVVA  348 (349)
Q Consensus       290 kPp~sY~~lI~~Ai~~sp~~~ltl~~Iy~~i~~~~pyy~~~~~gWqnsiRhnLs~~~~~  348 (349)
                      ||||||++||++||+++|+++|||+|||+||+++|||||.++.|||||||||||...||
T Consensus         1 kP~~sY~~LI~~Ai~~sp~~~lTL~eIy~~I~~~~pyyr~~~~gWknSIRHnLS~n~~F   59 (78)
T cd00059           1 KPPYSYSALIAMAIQSSPEKRLTLSEIYKWISDNFPYFRDAPAGWQNSIRHNLSLNKCF   59 (78)
T ss_pred             CCCCCHHHHHHHHHHhCCCCCeeHHHHHHHHHHhCCccccCCCCCccceeEecccccce
Confidence            89999999999999999999999999999999999999999999999999999999998


No 2  
>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription]
Probab=99.93  E-value=1.8e-26  Score=237.61  Aligned_cols=287  Identities=28%  Similarity=0.328  Sum_probs=152.3

Q ss_pred             cCcceeeecccCceeeeecceEEEeecCC-----CCCcccccCcchhhhcceEEeeecCCCceeeecCCCceEecCccee
Q psy7734          32 SGTAIAKLQGREFEYMVRQKRITIGRNSS-----RGDVDVNMGLSSFISRRHIEIFFEHPNFFMTCNGKNGVFVDGNSIR  106 (349)
Q Consensus        32 ~~~a~A~l~g~~~~y~~~~~~i~iGR~s~-----~~~vdi~lg~~~~ISR~Ha~i~~~~~~f~l~~~gknG~~v~~~~ir  106 (349)
                      .++|||+|.|..|+||+..++++|||.-+     .....+. +++.||   |..+     .||.  .-.+||   .++||
T Consensus        70 ~~qayak~~g~~~t~~v~~~s~a~gr~~~il~s~~~~lt~s-~~~~~~---~~~~-----~~~~--k~~~~~---~~sIr  135 (610)
T COG5025          70 EIQAYAKLAGSNWTYYVPPYSYATGRGLAILNSPDKPLTLS-KIYTWI---HNTF-----FYYA--KVVSRW---QNSIR  135 (610)
T ss_pred             HhhhHHHhcCCCcccccCCeeeeeccccccccCcccCCccc-ceeeee---eecc-----cccc--cccchh---hhhhh
Confidence            36899999999999999999999999543     2223333 455454   3111     2333  335688   99999


Q ss_pred             cccccccceeccCCCCCCCCCceeEEeCCCchhhhHHHHhhhhccCCCCCcCCCCCCCC-ccccccCCcchh--------
Q psy7734         107 HNLSLNRYFIKVPRSQEEPGKGSFWRIDPGSEHKLIEQAFRRRRQRGVPCFRAPFGLSS-RCTLRFPSTNIR--------  177 (349)
Q Consensus       107 hnLSln~~f~kv~r~~~~~GkG~~w~l~p~~~~~~~~~~~~~rr~~~~~~~~~P~~l~~-~~~~~~ps~~~~--------  177 (349)
                      |||++++.|++|.+..+..+||+||.+.|+...+|+..-.+   ..+..... -|.+++ .+..........        
T Consensus       136 ~Nls~~~a~~~i~g~~g~~~~g~~~~igP~~~~~~l~~g~~---~~~~~~~~-~~~~p~~~~~~~~~~~~~~~p~~~~~~  211 (610)
T COG5025         136 HNLSLNDAFIKIEGRNGAKVKGHFWSIGPGHETQFLKSGLR---LDGGGKQM-MFTLPSSTEIKITYSSTHSMPLLESND  211 (610)
T ss_pred             cccccCceEEEEeccCCccccceeeccCCCccceeeccccc---cccccccc-cccCccccceecccccccccCccccCc
Confidence            99999999999999999999999999999988766443211   22211111 111111 111111111000        


Q ss_pred             -------hhhhhccCCCCCCCCCCCCCccCccc--C--C-CCCC----CCCCCCCccCCCCCCCCCcCCCCCCCCCCCcc
Q psy7734         178 -------LQFQSLVNESDPAPTGQSVSSSGVGV--M--G-NPAT----SSLLPPLRINIPDHPHTEISSSPFPSPTGTIS  241 (349)
Q Consensus       178 -------~~~qsl~~~~~~~p~~~s~~~~~~~~--~--~-~~~~----~~~~~P~~~~~pd~~~~~~~~Sp~PSPtgt~S  241 (349)
                             ..+++....+... ..+..+.....+  .  . .+..    -....+....+....  .....-.+.+.+...
T Consensus       212 ~~~~nn~~~~~~~~~~~~~i-~~~~~ss~~~~~sl~~~~~~~~~~~~~~~~~~~~e~~i~~~n--~~~~~~~~~~~~~~~  288 (610)
T COG5025         212 SLNSNNERELLDIIKSSALI-RIPADSSSNLDVSLGHHISQPSTHTPVLDNHSSGEENISRIN--NSSQIDSPTPNYRMS  288 (610)
T ss_pred             Ccccccchhhhcccccchhh-ccccccchhhhhcccccccccCCCcccccCCCchhhhccccc--cccccccCCCCcccc
Confidence                   0000000000000 000000000000  0  0 0000    000111122222111  000000111222221


Q ss_pred             CCCCCCCCCCCCCC---------CCCCchhhHHhHHhhhhcccccccCCCCCCCCCCCCCCCHHHHHHHHHHcCCCCCcC
Q psy7734         242 AANSCPTSPRGLHN---------RRNVSADLHMAAHYAAAHTNVVNHMSLSISQDDSKPPYSYAQLIVQAVASAHDKQLT  312 (349)
Q Consensus       242 aa~s~Ps~p~~~~~---------~~~~~sd~~~~~~~~~~~~~~~~~~~~~~~~~~~kPp~sY~~lI~~Ai~~sp~~~lt  312 (349)
                      ...+|-..++-..+         ...+..+..    .     -..........+...||+++|+.||++||+.+|.++|+
T Consensus       289 si~ss~~~s~l~~~~~~~~k~~~s~p~~~~~~----~-----~~~~s~~s~~~~~~~kP~~sya~~iT~ail~s~~~kms  359 (610)
T COG5025         289 SIDSSVNPSRLANNKDEGRKGSKSSPVPKDAA----P-----PSTLSDLSADVNRTSKPAFSYANSITQAILSSPSGKMT  359 (610)
T ss_pred             ccccccCchhhccCcccccccCCCCCCccccc----c-----CCCcCccccccccCccCCcchhhhhHHHhhcCcccccc
Confidence            11211111111110         000000000    0     00000011224567899999999999999999999999


Q ss_pred             HHHHHHHHhccCCCcccCCCCCcccchhhhccCccc
Q psy7734         313 LSGIYSFITKNYPYYRTADKGWQVNYTYLDTTSVVA  348 (349)
Q Consensus       313 l~~Iy~~i~~~~pyy~~~~~gWqnsiRhnLs~~~~~  348 (349)
                      |++||.||..+|||||.+..+||||||||||...||
T Consensus       360 ls~Iy~~i~s~~pyYr~~p~~w~nSiRhnlSlNksf  395 (610)
T COG5025         360 LSEIYSWISSNLPYYRHKPTAWQNSIRHNLSLNKSF  395 (610)
T ss_pred             cccccccccccchhhccCCcccCchhhhhhhhcccc
Confidence            999999999999999999999999999999998876


No 3  
>smart00339 FH FORKHEAD. FORKHEAD, also known as a "winged helix"
Probab=99.93  E-value=1.6e-26  Score=184.73  Aligned_cols=59  Identities=46%  Similarity=0.755  Sum_probs=58.2

Q ss_pred             CCCCCHHHHHHHHHHcCCCCCcCHHHHHHHHhccCCCcccCCCCCcccchhhhccCccc
Q psy7734         290 KPPYSYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRTADKGWQVNYTYLDTTSVVA  348 (349)
Q Consensus       290 kPp~sY~~lI~~Ai~~sp~~~ltl~~Iy~~i~~~~pyy~~~~~gWqnsiRhnLs~~~~~  348 (349)
                      ||||||++||++||+++|+++|||+|||+||+++||||+.++.|||||||||||.+.||
T Consensus         1 kP~~sY~~lI~~ai~~sp~~~ltl~~Iy~~I~~~~pyy~~~~~~WknSIRHnLS~n~~F   59 (89)
T smart00339        1 KPPYSYIALIAMAILSSPDKRLTLSEIYKWIEDNFPYYRENRAGWQNSIRHNLSLNDCF   59 (89)
T ss_pred             CCCCCHHHHHHHHHHhCCCCCeeHHHHHHHHHHhCchhhcCccccccccccccchhhce
Confidence            89999999999999999999999999999999999999999999999999999999998


No 4  
>PF00250 Fork_head:  Fork head domain;  InterPro: IPR001766 The fork head protein of Drosophila melanogaster, a transcription factor that promotes terminal rather than segmental development, contains neither homeodomains nor zinc-fingers characteristic of other transcription factors []. Instead, it contains a distinct type of DNA-binding region, containing around 100 amino acids, which has since been identified in a number of transcription factors (including D. melanogaster FD1-5, mammalian HNF-3, human HTLF, Saccharomyces cerevisiae HCM1, etc.). This is referred to as the fork head domain but is also known as a 'winged helix' [, , ]. The fork head domain binds B-DNA as a monomer [], but shows no similarity to previously identified DNA-binding motifs. Although the domain is found in several different transcription factors, a common function is their involvement in early developmental decisions of cell fates during embryogenesis [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2UZK_A 2K86_A 1JXS_A 2C6Y_A 2A3S_A 2D2W_A 2KIU_A 1VTN_C 2A07_J 2AS5_F ....
Probab=99.92  E-value=2.5e-26  Score=186.18  Aligned_cols=60  Identities=48%  Similarity=0.791  Sum_probs=56.8

Q ss_pred             CCCCCHHHHHHHHHHcCCCCCcCHHHHHHHHhccCCCcccCCCCCcccchhhhccCcccC
Q psy7734         290 KPPYSYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRTADKGWQVNYTYLDTTSVVAW  349 (349)
Q Consensus       290 kPp~sY~~lI~~Ai~~sp~~~ltl~~Iy~~i~~~~pyy~~~~~gWqnsiRhnLs~~~~~~  349 (349)
                      ||||||++||++||+++|+++|||+|||+||+++||||+.+..+||||||||||.+.||.
T Consensus         1 KPp~sY~~LI~~Ai~~sp~~~Ltl~eIy~~i~~~~pyyr~~~~~WknSIRHnLS~~~~F~   60 (96)
T PF00250_consen    1 KPPYSYATLIAMAILSSPDKRLTLSEIYEWIEENFPYYRDASKGWKNSIRHNLSLNKCFV   60 (96)
T ss_dssp             -SSS-HHHHHHHHHHTSTTSEBEHHHHHHHHHHHCGHHHCTHCHHHHHHHHHHHHSTTEE
T ss_pred             CCCCcHHHHHHHHHHhCCCCCccHHHHHHHHHHhhccccccchhhhhHHhhhccccceee
Confidence            899999999999999999999999999999999999999999999999999999999983


No 5  
>KOG3563|consensus
Probab=99.84  E-value=3.2e-22  Score=190.85  Aligned_cols=70  Identities=36%  Similarity=0.545  Sum_probs=65.8

Q ss_pred             cCCCCCCCCCCCCCCCHHHHHHHHHHcCCCCCcCHHHHHHHHhccCCCcccCCCCCcccchhhhccCccc
Q psy7734         279 HMSLSISQDDSKPPYSYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRTADKGWQVNYTYLDTTSVVA  348 (349)
Q Consensus       279 ~~~~~~~~~~~kPp~sY~~lI~~Ai~~sp~~~ltl~~Iy~~i~~~~pyy~~~~~gWqnsiRhnLs~~~~~  348 (349)
                      ...+..+..+.||||||..||+|||+.+|.++|||+|||+||++-|||||.+.+.|||||||-||--.||
T Consensus       162 pktyRRsY~haKPPYSYISLITMAIQ~~pskmLTLSEIYqwIMDLFPyYrqNQQRWQNSIRHSLSFNDCF  231 (454)
T KOG3563|consen  162 PKTYRRSYTHAKPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCF  231 (454)
T ss_pred             CceeeccccCCCCChhHHHHHHHHHHhCCccceeHHHHHHHHHHhhhHhhhhHHHHHhhhhhhcccccee
Confidence            3345567788999999999999999999999999999999999999999999999999999999999998


No 6  
>KOG3562|consensus
Probab=99.79  E-value=1.5e-20  Score=169.27  Aligned_cols=64  Identities=38%  Similarity=0.627  Sum_probs=62.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHcCCCCCcCHHHHHHHHhccCCCcccCCCCCcccchhhhccCccc
Q psy7734         285 SQDDSKPPYSYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRTADKGWQVNYTYLDTTSVVA  348 (349)
Q Consensus       285 ~~~~~kPp~sY~~lI~~Ai~~sp~~~ltl~~Iy~~i~~~~pyy~~~~~gWqnsiRhnLs~~~~~  348 (349)
                      +..++||||||..|-+|||+++|+|+|-|+|||.||+++|||||.+.+.||||+|||||--.||
T Consensus         8 sY~dQKPPYSYIsLTaMAI~~SpekmLPLseIYkfImDrFPfYRkNTQrWQNSLRHNLSFNDCF   71 (277)
T KOG3562|consen    8 SYGDQKPPYSYISLTAMAIQSSPEKMLPLSEIYKFIMDRFPFYRKNTQRWQNSLRHNLSFNDCF   71 (277)
T ss_pred             cccccCCCceeeehhhHHhhcChhhcCcHHHHHHHHHhhCchhhhchHHHHHHhhcccccccee
Confidence            4578999999999999999999999999999999999999999999999999999999999998


No 7  
>KOG2294|consensus
Probab=99.79  E-value=3.8e-21  Score=194.16  Aligned_cols=63  Identities=38%  Similarity=0.673  Sum_probs=61.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHcCCCCCcCHHHHHHHHhc-cCCCcccCC-CCCcccchhhhccCccc
Q psy7734         286 QDDSKPPYSYAQLIVQAVASAHDKQLTLSGIYSFITK-NYPYYRTAD-KGWQVNYTYLDTTSVVA  348 (349)
Q Consensus       286 ~~~~kPp~sY~~lI~~Ai~~sp~~~ltl~~Iy~~i~~-~~pyy~~~~-~gWqnsiRhnLs~~~~~  348 (349)
                      +...||||||+.||+|||+.+|+++|||+|||+||+. +|||||++. .|||||||||||...||
T Consensus       126 ~~~~kpp~SY~~LI~mAI~~Sp~krLtLs~Iy~~i~~~~fpyyr~~~~~gWqNSIRHNLSLn~cF  190 (454)
T KOG2294|consen  126 GAGVKPPYSYSGLIAMAIRLSPGKRLTLGGIYFYILLEHFPYYRDANMPGWKNSIRHNLSLNKCF  190 (454)
T ss_pred             CCCcCCccccccccccccccCCCcceeecCeeEEEEeccccccccCCCccchhhcccccccccCc
Confidence            5679999999999999999999999999999999996 999999999 99999999999999998


No 8  
>KOG4385|consensus
Probab=99.75  E-value=2.7e-19  Score=176.30  Aligned_cols=64  Identities=33%  Similarity=0.604  Sum_probs=61.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHHcCCCCCcCHHHHHHHHhccCCCcccCCCCCcccchhhhccCccc
Q psy7734         285 SQDDSKPPYSYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRTADKGWQVNYTYLDTTSVVA  348 (349)
Q Consensus       285 ~~~~~kPp~sY~~lI~~Ai~~sp~~~ltl~~Iy~~i~~~~pyy~~~~~gWqnsiRhnLs~~~~~  348 (349)
                      -..+.||||+||.||.+||+.+|+++|||+|||.|+...|.|||.+...|||+||||||.+.||
T Consensus       363 k~~dvRPPfTYAsLIRqAIlESpdkQLTLNEIY~WFTrtFAYFRRNaATWKnAVRHNLSLHKCF  426 (581)
T KOG4385|consen  363 KNADVRPPFTYASLIRQAILESPDKQLTLNEIYNWFTRTFAYFRRNAATWKNAVRHNLSLHKCF  426 (581)
T ss_pred             hccccCCchhHHHHHHHHHhcCchhhccHHHHHHHHHHHHHHHhccchhHhHHHhhhhHHHHHH
Confidence            3467999999999999999999999999999999999999999999999999999999999998


No 9  
>KOG3562|consensus
Probab=99.65  E-value=1.4e-17  Score=150.27  Aligned_cols=98  Identities=33%  Similarity=0.548  Sum_probs=80.1

Q ss_pred             cccCceeeeecceEEEeecCCCCCcccccCcchhhhcceEEeeecCCCceeeecCCCceEecCcceecccccccceeccC
Q psy7734          40 QGREFEYMVRQKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEHPNFFMTCNGKNGVFVDGNSIRHNLSLNRYFIKVP  119 (349)
Q Consensus        40 ~g~~~~y~~~~~~i~iGR~s~~~~vdi~lg~~~~ISR~Ha~i~~~~~~f~l~~~gknG~~v~~~~irhnLSln~~f~kv~  119 (349)
                      +.+++.|.-.   ..+++.++++++.-.-+|||||..++        .||-+.  -.-|   +|++|||||.|+||+|||
T Consensus        12 QKPPYSYIsL---TaMAI~~SpekmLPLseIYkfImDrF--------PfYRkN--TQrW---QNSLRHNLSFNDCFIKiP   75 (277)
T KOG3562|consen   12 QKPPYSYISL---TAMAIQSSPEKMLPLSEIYKFIMDRF--------PFYRKN--TQRW---QNSLRHNLSFNDCFIKIP   75 (277)
T ss_pred             cCCCceeeeh---hhHHhhcChhhcCcHHHHHHHHHhhC--------chhhhc--hHHH---HHHhhccccccceeeecC
Confidence            4567888765   44566666666544449999999886        555433  3458   999999999999999999


Q ss_pred             CCCCCCCCceeEEeCCCchhhhHHHHhhhhccCC
Q psy7734         120 RSQEEPGKGSFWRIDPGSEHKLIEQAFRRRRQRG  153 (349)
Q Consensus       120 r~~~~~GkG~~w~l~p~~~~~~~~~~~~~rr~~~  153 (349)
                      |-.+.+|||+||.|+|.+-++|+.+.+.|||+|-
T Consensus        76 Rr~drpGKGsyWalHP~a~dMFENGS~LRRrKRF  109 (277)
T KOG3562|consen   76 RRPDRPGKGSYWALHPSAFDMFENGSLLRRRKRF  109 (277)
T ss_pred             CCCCCCCCccceeeccchhhhcccchHHHHhhhh
Confidence            9999999999999999999999999999988874


No 10 
>KOG3563|consensus
Probab=99.58  E-value=5.1e-17  Score=155.48  Aligned_cols=97  Identities=30%  Similarity=0.536  Sum_probs=79.8

Q ss_pred             ccCceeeeecceEEEeecCCCCCcccccCcchhhhcceEEeeecCCCceeeecCCCceEecCcceecccccccceeccCC
Q psy7734          41 GREFEYMVRQKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEHPNFFMTCNGKNGVFVDGNSIRHNLSLNRYFIKVPR  120 (349)
Q Consensus        41 g~~~~y~~~~~~i~iGR~s~~~~vdi~lg~~~~ISR~Ha~i~~~~~~f~l~~~gknG~~v~~~~irhnLSln~~f~kv~r  120 (349)
                      .++|.|+-.   ||+++.-.+.++...-+||+||-..+        .||.+  ...-|   +|+|||.||+|+||+||+|
T Consensus       173 KPPYSYISL---ITMAIQ~~pskmLTLSEIYqwIMDLF--------PyYrq--NQQRW---QNSIRHSLSFNDCFVKVaR  236 (454)
T KOG3563|consen  173 KPPYSYISL---ITMAIQQAPSKMLTLSEIYQWIMDLF--------PYYRQ--NQQRW---QNSIRHSLSFNDCFVKVAR  236 (454)
T ss_pred             CCChhHHHH---HHHHHHhCCccceeHHHHHHHHHHhh--------hHhhh--hHHHH---HhhhhhhccccceeeeccC
Confidence            456777764   88998666665444449999998886        55543  34468   9999999999999999999


Q ss_pred             CCCCCCCceeEEeCCCchhhhHHHHhhhhccCC
Q psy7734         121 SQEEPGKGSFWRIDPGSEHKLIEQAFRRRRQRG  153 (349)
Q Consensus       121 ~~~~~GkG~~w~l~p~~~~~~~~~~~~~rr~~~  153 (349)
                      .++.||||+||+|+|++..+|+.+.+.||.+|-
T Consensus       237 SPDKPGKGSfWTLHpdsGNMFENGCYLRRQKRF  269 (454)
T KOG3563|consen  237 SPDKPGKGSFWTLHPDSGNMFENGCYLRRQKRF  269 (454)
T ss_pred             CCCCCCCccceeecCCcCcccccchhehhhhhh
Confidence            999999999999999999999999988877763


No 11 
>KOG2294|consensus
Probab=99.57  E-value=6.5e-16  Score=156.15  Aligned_cols=95  Identities=36%  Similarity=0.691  Sum_probs=75.7

Q ss_pred             ccCceeeeecceEEEeec-CCCCCcccccCcchhhhc-ceEEeeecCCCceeeecCC-CceEecCcceecccccccceec
Q psy7734          41 GREFEYMVRQKRITIGRN-SSRGDVDVNMGLSSFISR-RHIEIFFEHPNFFMTCNGK-NGVFVDGNSIRHNLSLNRYFIK  117 (349)
Q Consensus        41 g~~~~y~~~~~~i~iGR~-s~~~~vdi~lg~~~~ISR-~Ha~i~~~~~~f~l~~~gk-nG~~v~~~~irhnLSln~~f~k  117 (349)
                      .+.+.|...   |++.+. |+.++++|. |||+||+. ++        .||-  .-+ .||   +|+||||||||+||+|
T Consensus       130 kpp~SY~~L---I~mAI~~Sp~krLtLs-~Iy~~i~~~~f--------pyyr--~~~~~gW---qNSIRHNLSLn~cF~K  192 (454)
T KOG2294|consen  130 KPPYSYSGL---IAMAIRLSPGKRLTLG-GIYFYILLEHF--------PYYR--DANMPGW---KNSIRHNLSLNKCFVK  192 (454)
T ss_pred             CCccccccc---cccccccCCCcceeec-CeeEEEEeccc--------cccc--cCCCccc---hhhcccccccccCccc
Confidence            345677664   777765 555677888 99999986 54        3332  233 899   9999999999999999


Q ss_pred             cCCCCCCCCCceeEEeCCCchh-hhHHHHhhhhccC
Q psy7734         118 VPRSQEEPGKGSFWRIDPGSEH-KLIEQAFRRRRQR  152 (349)
Q Consensus       118 v~r~~~~~GkG~~w~l~p~~~~-~~~~~~~~~rr~~  152 (349)
                      |+|..+++|||+||+|||+.+. +|..+.|+|||++
T Consensus       193 vpr~~~~~gKg~~W~ldP~~~~~~~~~g~~~rr~~~  228 (454)
T KOG2294|consen  193 VPRERGRPGKGNYWTLDPDDENNMFDNGSFRRRRRS  228 (454)
T ss_pred             cCCcccCCCCCCccccCcchhccccccccccccccc
Confidence            9999999999999999999998 6666788877765


No 12 
>cd00059 FH Forkhead (FH), also known as a "winged helix".  FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as monomers, are also found in the Hepatocyte nuclear factor (HNF) proteins, which provide tissue-specific gene regulation. The structure contains 2 flexible loops or "wings" in the C-terminal region, hence the term winged helix.
Probab=99.53  E-value=3.3e-15  Score=116.58  Aligned_cols=68  Identities=43%  Similarity=0.799  Sum_probs=55.4

Q ss_pred             EEEee-cCCCCCcccccCcchhhhcceEEeeecCCCceeeecCCCceEecCcceecccccccceeccCCCCCCCCCceeE
Q psy7734          53 ITIGR-NSSRGDVDVNMGLSSFISRRHIEIFFEHPNFFMTCNGKNGVFVDGNSIRHNLSLNRYFIKVPRSQEEPGKGSFW  131 (349)
Q Consensus        53 i~iGR-~s~~~~vdi~lg~~~~ISR~Ha~i~~~~~~f~l~~~gknG~~v~~~~irhnLSln~~f~kv~r~~~~~GkG~~w  131 (349)
                      |..+. +++.+++++. +||++|..++        .||-.  ...||   +|+||||||+|+||+||+|..+++|||+||
T Consensus        10 I~~Ai~~sp~~~lTL~-eIy~~I~~~~--------pyyr~--~~~gW---knSIRHnLS~n~~F~kv~r~~~~~gkg~~W   75 (78)
T cd00059          10 IAMAIQSSPEKRLTLS-EIYKWISDNF--------PYFRD--APAGW---QNSIRHNLSLNKCFVKVPREPDEPGKGSYW   75 (78)
T ss_pred             HHHHHHhCCCCCeeHH-HHHHHHHHhC--------Ccccc--CCCCC---ccceeEecccccceEECCCCCCCCCCCCee
Confidence            44443 3456677888 9999998886        44332  36799   999999999999999999999999999999


Q ss_pred             EeC
Q psy7734         132 RID  134 (349)
Q Consensus       132 ~l~  134 (349)
                      +||
T Consensus        76 ~i~   78 (78)
T cd00059          76 TLD   78 (78)
T ss_pred             eeC
Confidence            986


No 13 
>PF00250 Fork_head:  Fork head domain;  InterPro: IPR001766 The fork head protein of Drosophila melanogaster, a transcription factor that promotes terminal rather than segmental development, contains neither homeodomains nor zinc-fingers characteristic of other transcription factors []. Instead, it contains a distinct type of DNA-binding region, containing around 100 amino acids, which has since been identified in a number of transcription factors (including D. melanogaster FD1-5, mammalian HNF-3, human HTLF, Saccharomyces cerevisiae HCM1, etc.). This is referred to as the fork head domain but is also known as a 'winged helix' [, , ]. The fork head domain binds B-DNA as a monomer [], but shows no similarity to previously identified DNA-binding motifs. Although the domain is found in several different transcription factors, a common function is their involvement in early developmental decisions of cell fates during embryogenesis [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2UZK_A 2K86_A 1JXS_A 2C6Y_A 2A3S_A 2D2W_A 2KIU_A 1VTN_C 2A07_J 2AS5_F ....
Probab=99.52  E-value=5.4e-16  Score=125.78  Aligned_cols=93  Identities=38%  Similarity=0.744  Sum_probs=72.7

Q ss_pred             CceeeeecceEEEee-cCCCCCcccccCcchhhhcceEEeeecCCCceeeecCCCceEecCcceecccccccceeccCCC
Q psy7734          43 EFEYMVRQKRITIGR-NSSRGDVDVNMGLSSFISRRHIEIFFEHPNFFMTCNGKNGVFVDGNSIRHNLSLNRYFIKVPRS  121 (349)
Q Consensus        43 ~~~y~~~~~~i~iGR-~s~~~~vdi~lg~~~~ISR~Ha~i~~~~~~f~l~~~gknG~~v~~~~irhnLSln~~f~kv~r~  121 (349)
                      +++|...   |.++. +++.+.+++. +||+||..++        .||-  ....||   +|+||||||+|+||+||++.
T Consensus         3 p~sY~~L---I~~Ai~~sp~~~Ltl~-eIy~~i~~~~--------pyyr--~~~~~W---knSIRHnLS~~~~F~kv~~~   65 (96)
T PF00250_consen    3 PYSYATL---IAMAILSSPDKRLTLS-EIYEWIEENF--------PYYR--DASKGW---KNSIRHNLSLNKCFVKVPRD   65 (96)
T ss_dssp             SS-HHHH---HHHHHHTSTTSEBEHH-HHHHHHHHHC--------GHHH--CTHCHH---HHHHHHHHHHSTTEEEESCC
T ss_pred             CCcHHHH---HHHHHHhCCCCCccHH-HHHHHHHHhh--------cccc--ccchhh---hhHHhhhccccceeeecCcC
Confidence            4444442   44444 4556778888 9999998886        3332  345799   99999999999999999998


Q ss_pred             CCCCCCceeEEeCCCchhhhHHHHhhhhccC
Q psy7734         122 QEEPGKGSFWRIDPGSEHKLIEQAFRRRRQR  152 (349)
Q Consensus       122 ~~~~GkG~~w~l~p~~~~~~~~~~~~~rr~~  152 (349)
                      .++.|||+||+|+|+....+.++.+++||+|
T Consensus        66 ~~~~gkg~~W~i~~~~~~~~~~~~~~~~~~~   96 (96)
T PF00250_consen   66 PSEPGKGSYWTIDPEAIEEFEKGRFKRRRKR   96 (96)
T ss_dssp             TSSSSSSEEEEE-CTHHHHHHHSCCSSSSSS
T ss_pred             CCCCCCceeEEeCHHHHHHHhcchhhhhhcc
Confidence            8889999999999999999998888877664


No 14 
>smart00339 FH FORKHEAD. FORKHEAD, also known as a "winged helix"
Probab=99.47  E-value=1.3e-14  Score=116.07  Aligned_cols=70  Identities=39%  Similarity=0.765  Sum_probs=57.4

Q ss_pred             cCCCCCcccccCcchhhhcceEEeeecCCCceeeecCCCceEecCcceecccccccceeccCCCCCCCCCceeEEeCCCc
Q psy7734          58 NSSRGDVDVNMGLSSFISRRHIEIFFEHPNFFMTCNGKNGVFVDGNSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPGS  137 (349)
Q Consensus        58 ~s~~~~vdi~lg~~~~ISR~Ha~i~~~~~~f~l~~~gknG~~v~~~~irhnLSln~~f~kv~r~~~~~GkG~~w~l~p~~  137 (349)
                      +++.+.+++. +||++|..++        .||- . ...||   +|+||||||+|+||+||++..+.+|||+||+|+|++
T Consensus        16 ~sp~~~ltl~-~Iy~~I~~~~--------pyy~-~-~~~~W---knSIRHnLS~n~~F~kv~~~~~~~gkg~~W~i~~~~   81 (89)
T smart00339       16 SSPDKRLTLS-EIYKWIEDNF--------PYYR-E-NRAGW---QNSIRHNLSLNDCFVKVPREGDRPGKGSYWTLDPDA   81 (89)
T ss_pred             hCCCCCeeHH-HHHHHHHHhC--------chhh-c-Ccccc---ccccccccchhhceeecCcCCCCCCCCCEEEECccH
Confidence            3456677887 9999998886        3332 2 33499   999999999999999999988888999999999998


Q ss_pred             hhhh
Q psy7734         138 EHKL  141 (349)
Q Consensus       138 ~~~~  141 (349)
                      ...+
T Consensus        82 ~~~~   85 (89)
T smart00339       82 ENMF   85 (89)
T ss_pred             HHHH
Confidence            7633


No 15 
>KOG2293|consensus
Probab=99.15  E-value=1.8e-11  Score=123.09  Aligned_cols=100  Identities=27%  Similarity=0.392  Sum_probs=90.6

Q ss_pred             hhHhhhhcccCCCCCcccccccCcceeeecccCceeeeecceEEEeecCCCCCccccc---CcchhhhcceEEeeec-CC
Q psy7734          11 DAWALLALKSTSPSPSKIQWKSGTAIAKLQGREFEYMVRQKRITIGRNSSRGDVDVNM---GLSSFISRRHIEIFFE-HP   86 (349)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~a~A~l~g~~~~y~~~~~~i~iGR~s~~~~vdi~l---g~~~~ISR~Ha~i~~~-~~   86 (349)
                      -...|+.|++.+.++.+.++....|+|.|.|+...|||++++|+|||.+..-.|||||   |+...|||+.+.|+.. .+
T Consensus       408 l~~~iirleqs~~~~mqrai~~hgAiAvL~Gr~skh~mrk~EVtlGRat~d~~VDIDLgkegpatKISRRQa~IkL~n~G  487 (547)
T KOG2293|consen  408 LVRSIIRLEQSAESYMQRAIAFHGAIAVLYGRFSKHYMRKKEVTLGRATGDLKVDIDLGKEGPATKISRRQALIKLKNDG  487 (547)
T ss_pred             HHHHhhhhhhcccchhhhhhhhcceeEEEechhhHhhhcCcceEeeccCCCcceeeeccccCccceeeccceeEEeccCC
Confidence            3567899999999999988888999999999999999999999999999999999999   5678999999999975 68


Q ss_pred             CceeeecCCCceEecCcceecccc
Q psy7734          87 NFFMTCNGKNGVFVDGNSIRHNLS  110 (349)
Q Consensus        87 ~f~l~~~gknG~~v~~~~irhnLS  110 (349)
                      .|+|..+||..++|||..|-|+-.
T Consensus       488 sF~IkNlGK~~I~vng~~l~~gq~  511 (547)
T KOG2293|consen  488 SFFIKNLGKRSILVNGGELDRGQK  511 (547)
T ss_pred             cEEeccCcceeEEeCCccccCCce
Confidence            999999999999999988876433


No 16 
>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription]
Probab=98.67  E-value=1.8e-09  Score=112.37  Aligned_cols=59  Identities=34%  Similarity=0.453  Sum_probs=56.4

Q ss_pred             CCCCCCCHHHHHHHHHHcCCCCCcCHHHHHHHHhccCCCcccCCCCCcccchhhhccCc
Q psy7734         288 DSKPPYSYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRTADKGWQVNYTYLDTTSV  346 (349)
Q Consensus       288 ~~kPp~sY~~lI~~Ai~~sp~~~ltl~~Iy~~i~~~~pyy~~~~~gWqnsiRhnLs~~~  346 (349)
                      ..+|||+|+.+|.++|+.+++++|||..||.||-..|.||.....+|||+|||||+.-.
T Consensus        84 ~~v~~~s~a~gr~~~il~s~~~~lt~s~~~~~~~~~~~~~~k~~~~~~~sIr~Nls~~~  142 (610)
T COG5025          84 YYVPPYSYATGRGLAILNSPDKPLTLSKIYTWIHNTFFYYAKVVSRWQNSIRHNLSLND  142 (610)
T ss_pred             cccCCeeeeeccccccccCcccCCcccceeeeeeecccccccccchhhhhhhcccccCc
Confidence            38999999999999999999999999999999999999999999999999999998643


No 17 
>PF00498 FHA:  FHA domain;  InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands [].  To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=98.19  E-value=2.2e-06  Score=64.19  Aligned_cols=51  Identities=35%  Similarity=0.627  Sum_probs=40.2

Q ss_pred             EEEeecCCCCCcccccCcchhhhcceEEeeecCC-Cceeeec-CCCceEecCcceec
Q psy7734          53 ITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEHP-NFFMTCN-GKNGVFVDGNSIRH  107 (349)
Q Consensus        53 i~iGR~s~~~~vdi~lg~~~~ISR~Ha~i~~~~~-~f~l~~~-gknG~~v~~~~irh  107 (349)
                      ++|||+ +..++.++   ...|||+||.|.++.. .|+++.+ ++||+||||..+..
T Consensus         1 ~~iGR~-~~~di~l~---~~~iSr~Ha~i~~~~~~~~~i~d~~s~ngt~vng~~l~~   53 (68)
T PF00498_consen    1 VTIGRS-PDCDIVLP---DPSISRRHARISFDDDGQFYIEDLGSTNGTFVNGQRLGP   53 (68)
T ss_dssp             EEEESS-TTSSEEET---STTSSTTSEEEEEETTEEEEEEESSSSS-EEETTEEESS
T ss_pred             CEEcCC-CCCCEEEC---CHheeeeeeEEEEeceeeEEEEeCCCCCcEEECCEEcCC
Confidence            579998 33444444   4679999999999998 8999997 69999999977644


No 18 
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=97.97  E-value=7.8e-06  Score=57.71  Aligned_cols=50  Identities=44%  Similarity=0.771  Sum_probs=39.4

Q ss_pred             EEEeecCCCCCcccccCcchhhhcceEEeeecCCC-ceeeecC-CCceEecCcce
Q psy7734          53 ITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEHPN-FFMTCNG-KNGVFVDGNSI  105 (349)
Q Consensus        53 i~iGR~s~~~~vdi~lg~~~~ISR~Ha~i~~~~~~-f~l~~~g-knG~~v~~~~i  105 (349)
                      ++|||......+.++ ++  .|||+|+.|+++... |++...+ +||++||+..|
T Consensus         1 ~~iGr~~~~~~i~~~-~~--~vs~~H~~i~~~~~~~~~i~d~~s~~gt~vng~~v   52 (52)
T smart00240        1 VTIGRSSEDCDIQLP-GP--SISRRHAEIVYDGGGRFYLIDLGSTNGTFVNGKRI   52 (52)
T ss_pred             CEeCCCCCCCCEEeC-CC--CcchhHcEEEECCCCeEEEEECCCCCCeeECCEEC
Confidence            478998754555555 33  499999999999875 9999997 99999998753


No 19 
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53,  Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=97.93  E-value=2e-05  Score=62.63  Aligned_cols=62  Identities=27%  Similarity=0.491  Sum_probs=50.2

Q ss_pred             cCceeeeec-ceEEEeecCCCCCcccccCcchhhhcceEEeeecC--CCceeeecCCCceEecCccee
Q psy7734          42 REFEYMVRQ-KRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEH--PNFFMTCNGKNGVFVDGNSIR  106 (349)
Q Consensus        42 ~~~~y~~~~-~~i~iGR~s~~~~vdi~lg~~~~ISR~Ha~i~~~~--~~f~l~~~gknG~~v~~~~ir  106 (349)
                      ....|.+.. ..++|||++..  +++.+. .+.|||+|+.|.++.  ..|.+.+.++||++||+..+.
T Consensus        12 ~~~~~~l~~~~~~~iGr~~~~--~~i~l~-~~~iS~~H~~i~~~~~~~~~~~~~~s~~g~~vn~~~~~   76 (102)
T cd00060          12 SGRRYYLDPGGTYTIGRDSDN--CDIVLD-DPSVSRRHAVIRYDGDGGVVLIDLGSTNGTFVNGQRVS   76 (102)
T ss_pred             ceeEEEECCCCeEEECcCCCc--CCEEcC-CCCeeCcceEEEEcCCCCEEEEECCCCCCeEECCEECC
Confidence            567788888 99999998776  344444 799999999999997  456666779999999998765


No 20 
>KOG4385|consensus
Probab=97.69  E-value=8.1e-07  Score=88.87  Aligned_cols=73  Identities=26%  Similarity=0.555  Sum_probs=56.0

Q ss_pred             CceeeeecceEEEeecCCCCCcccccCcchhhhcceEEeeecCCCceeeecCCCceEecCcceecccccccceeccCCCC
Q psy7734          43 EFEYMVRQKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEHPNFFMTCNGKNGVFVDGNSIRHNLSLNRYFIKVPRSQ  122 (349)
Q Consensus        43 ~~~y~~~~~~i~iGR~s~~~~vdi~lg~~~~ISR~Ha~i~~~~~~f~l~~~gknG~~v~~~~irhnLSln~~f~kv~r~~  122 (349)
                      +|||.-.-+.-+|  +|+..+++++ +||+|..|-+        .|+.  ..-.-|   +|.|||||||++||.+|..  
T Consensus       370 PfTYAsLIRqAIl--ESpdkQLTLN-EIY~WFTrtF--------AYFR--RNaATW---KnAVRHNLSLHKCF~RVEn--  431 (581)
T KOG4385|consen  370 PFTYASLIRQAIL--ESPDKQLTLN-EIYNWFTRTF--------AYFR--RNAATW---KNAVRHNLSLHKCFVRVEN--  431 (581)
T ss_pred             chhHHHHHHHHHh--cCchhhccHH-HHHHHHHHHH--------HHHh--ccchhH---hHHHhhhhHHHHHHHHHHH--
Confidence            4777665444444  5778889999 9999999987        3322  223468   9999999999999999966  


Q ss_pred             CCCCCceeEEeCCC
Q psy7734         123 EEPGKGSFWRIDPG  136 (349)
Q Consensus       123 ~~~GkG~~w~l~p~  136 (349)
                         -||.-|++|..
T Consensus       432 ---vkgavwtvDe~  442 (581)
T KOG4385|consen  432 ---VKGAVWTVDER  442 (581)
T ss_pred             ---Hhcceeeeehh
Confidence               68999999843


No 21 
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=97.07  E-value=0.00072  Score=68.13  Aligned_cols=62  Identities=24%  Similarity=0.353  Sum_probs=49.7

Q ss_pred             cCceeeeecceEEEeecCCCCCcccccCcchhhhcceEEeeecCCCceeeecCCCceEec--Ccce
Q psy7734          42 REFEYMVRQKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEHPNFFMTCNGKNGVFVD--GNSI  105 (349)
Q Consensus        42 ~~~~y~~~~~~i~iGR~s~~~~vdi~lg~~~~ISR~Ha~i~~~~~~f~l~~~gknG~~v~--~~~i  105 (349)
                      ..-+|.+.+..++|||... ..+-|+ +....|||+|++|.++.+.|+|..++.||+|||  +..|
T Consensus        15 ~~~~~~f~~~~~~IGR~~~-~d~~l~-d~~~~VS~~Ha~I~~~~g~~~l~DlStNGT~VN~sg~~l   78 (396)
T TIGR03354        15 IAAQKTFGTNGGTIGRSED-CDWVLP-DPERHVSGRHARIRYRDGAYLLTDLSTNGVFLNGSGSPL   78 (396)
T ss_pred             cceEEEECCCCEEEecCCC-CCEEeC-CCCCCcchhhcEEEEECCEEEEEECCCCCeEECCCCCCC
Confidence            3456777788899999764 455555 556679999999999999999999999999999  5443


No 22 
>COG1716 FOG: FHA domain [Signal transduction mechanisms]
Probab=96.83  E-value=0.0015  Score=58.27  Aligned_cols=58  Identities=29%  Similarity=0.456  Sum_probs=43.4

Q ss_pred             eeeecceEEEeecCCCCCcccccCcchhhhcceEEeeecCCCceeeec-CCCceEecCcceec
Q psy7734          46 YMVRQKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEHPNFFMTCN-GKNGVFVDGNSIRH  107 (349)
Q Consensus        46 y~~~~~~i~iGR~s~~~~vdi~lg~~~~ISR~Ha~i~~~~~~f~l~~~-gknG~~v~~~~irh  107 (349)
                      +......++|||..+.+.+--    ...|||+||.|+++...++++.+ +.||.|||+..+++
T Consensus        84 ~~~~~~~~tigr~~~~~i~~~----~~~vSR~Ha~l~~~~~~~~~~d~~S~nGt~vn~~~v~~  142 (191)
T COG1716          84 IVLGEPVTTIGRDPDNDIVLD----DDVVSRRHAELRREGNEVFLEDLGSTNGTYVNGEKVRQ  142 (191)
T ss_pred             cccccceEEeccCCCCCEEcC----CCccccceEEEEEeCCceEEEECCCCcceEECCeEccC
Confidence            333445789999433333222    38999999999999988887777 68999999988764


No 23 
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular    transport; Signal transduction mechanisms]
Probab=95.77  E-value=0.0077  Score=60.40  Aligned_cols=64  Identities=20%  Similarity=0.403  Sum_probs=53.1

Q ss_pred             eeeeecceEEEeecCCCCCcccccCcchhhhcceEEeeecCCCceeeecCCCceEecCcceecccc
Q psy7734          45 EYMVRQKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEHPNFFMTCNGKNGVFVDGNSIRHNLS  110 (349)
Q Consensus        45 ~y~~~~~~i~iGR~s~~~~vdi~lg~~~~ISR~Ha~i~~~~~~f~l~~~gknG~~v~~~~irhnLS  110 (349)
                      .+......-+|||. ...+.-|+ ..-.+||++|++|.|+.+.|+|...+.+|.+|||-...+|-.
T Consensus        20 q~~f~~~~g~IGrs-~dcdW~i~-D~~~~VS~~Hc~I~~~dg~f~L~DtS~g~l~VNgs~~~~g~~   83 (430)
T COG3456          20 QKLFDRGGGVIGRS-PDCDWQID-DPERFVSKQHCTISYRDGGFCLTDTSNGGLLVNGSDLPLGEG   83 (430)
T ss_pred             hhhhhcCCcccccC-CCCCcccc-CcccccchhheEEEecCCeEEEEecCCCceeecccccCCCCC
Confidence            34555667789994 55666666 778999999999999999999999999999999988777666


No 24 
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=95.68  E-value=0.011  Score=63.33  Aligned_cols=53  Identities=19%  Similarity=0.414  Sum_probs=42.4

Q ss_pred             ecceEEEeecCCCCC----cccccCcchhhhcceEEeeecCCCceeeec-CCCceEecCcc
Q psy7734          49 RQKRITIGRNSSRGD----VDVNMGLSSFISRRHIEIFFEHPNFFMTCN-GKNGVFVDGNS  104 (349)
Q Consensus        49 ~~~~i~iGR~s~~~~----vdi~lg~~~~ISR~Ha~i~~~~~~f~l~~~-gknG~~v~~~~  104 (349)
                      .+.-.+|||++..+-    +-|.   ..+||+.||+|.+..+.|+|+.+ +.||.|||+|.
T Consensus       555 ~~~p~~iG~~~~~~~~~~~i~i~---~~~vS~~Ha~i~~~~~~~~~~Dl~S~nGT~v~~~~  612 (668)
T PLN02927        555 EDQPCIVGSEPDQDFPGMRIVIP---SSQVSKMHARVIYKDGAFFLMDLRSEHGTYVTDNE  612 (668)
T ss_pred             CCCCeEecCCCCcCCCCceEEec---CCccChhHeEEEEECCEEEEEECCCCCccEEeCCC
Confidence            445567899987653    2233   47999999999999999999999 55999999887


No 25 
>PF00538 Linker_histone:  linker histone H1 and H5 family;  InterPro: IPR005818 Histone proteins have central roles in both chromatin organisation (as structural units of the nucleosome) and gene regulation (as dynamic components that have a direct impact on DNA transcription and replication). Eukaryotic DNA wraps around a histone octamer to form a nucleosome, the first order of compaction of eukaryotic chromatin. The core histone octamer is composed of a central H3-H4 tetramer and two flanking H2A-H2B dimers. Each of the core histone contains a common structural motif, called the histone fold, which facilitates the interactions between the individual core histones. In addition to the core histones, there is a "linker histone" called H1 (or H5 in avian species). The linker histones present in all multicellular eukaryotes are the most divergent group of histones, with numerous cell type- and stage-specific variant. Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures. Histone H5 performs the same function as histone H1, and replaces H1 in certain cells. The structure of GH5, the globular domain of the linker histone H5 is known [, ]. The fold is similar to the DNA-binding domain of the catabolite gene activator protein, CAP, thus providing a possible model for the binding of GH5 to DNA. The linker histones, which do not contain the histone fold motif, are critical to the higher-order compaction of chromatin, because they bind to internucleosomal DNA and facilitate interactions between individual nucleosomes. In addition, H1 variants have been shown to be involved in the regulation of developmental genes. A common feature of this protein family is a tripartite structure in which a globular (H15) domain of about 80 amino acids is flanked by two less structured N- and C-terminal tails. The H15 domain is also characterised by high sequence homology among the family of linker histones. The highly conserved H15 domain is essential for the binding of H1 or H5 to the nucleosome. It consists of a three helix bundle (I-III), with a beta-hairpin at the C terminus. There is also a short three-residue stretch between helices I and II that is in the beta-strand conformation. Together with the C-terminal beta-hairpin, this strand forms the third strand of an antiparallel beta-sheet [, , , ]. Proteins known to contain a H15 domain are:  - Eukaryotic histone H1. The histones H1 constitute a family with many variants, differing in their affinity for chromatin. Several variants are simultaneously present in a single cell. For example, the nucleated erythrocytes of birds contain both H1 and H5, the latter being an extreme variant of H1.  - Eukaryotic MHYST family of histone acetyltransferase. Histone acetyltransferases transfer an acetyl group from acetyl-CoA to the epsylon- amino group of lysine within the basic NH2-termini of histones, which bind the acidic phosphates of DNA [].    This entry represents the H15 domain.; GO: 0003677 DNA binding, 0006334 nucleosome assembly, 0000786 nucleosome, 0005634 nucleus; PDB: 2LSO_A 2RQP_A 1UHM_A 1UST_A 1GHC_A 1HST_A 1YQA_A 1USS_A.
Probab=92.17  E-value=0.16  Score=39.16  Aligned_cols=33  Identities=24%  Similarity=0.534  Sum_probs=28.8

Q ss_pred             CHHHHHHHHHHcCCC-CCcCHHHHHHHHhccCCC
Q psy7734         294 SYAQLIVQAVASAHD-KQLTLSGIYSFITKNYPY  326 (349)
Q Consensus       294 sY~~lI~~Ai~~sp~-~~ltl~~Iy~~i~~~~py  326 (349)
                      +|.+||.+||....+ +-.++..|..||+++|+.
T Consensus         4 ~y~~mI~eAI~~l~er~GsS~~aI~kyI~~~y~~   37 (77)
T PF00538_consen    4 PYSDMILEAIKALKERKGSSLQAIKKYIKAKYKV   37 (77)
T ss_dssp             CHHHHHHHHHHHCCSSSSEEHHHHHHHHHHHSSC
T ss_pred             CHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCc
Confidence            499999999987555 669999999999999974


No 26 
>smart00526 H15 Domain in histone families 1 and 5.
Probab=91.57  E-value=0.37  Score=35.91  Aligned_cols=32  Identities=28%  Similarity=0.596  Sum_probs=28.1

Q ss_pred             CHHHHHHHHHHcCCC-CCcCHHHHHHHHhccCC
Q psy7734         294 SYAQLIVQAVASAHD-KQLTLSGIYSFITKNYP  325 (349)
Q Consensus       294 sY~~lI~~Ai~~sp~-~~ltl~~Iy~~i~~~~p  325 (349)
                      +|..||..||....+ +..++..|..||..+|+
T Consensus         6 ~~~~mI~eAI~~l~er~GsS~~aI~kyi~~~~~   38 (66)
T smart00526        6 PYSEMITEAISALKERKGSSLQAIKKYIEANYK   38 (66)
T ss_pred             CHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCC
Confidence            799999999988666 44899999999999966


No 27 
>cd00073 H15 linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated proteins that bind to the exterior of nucleosomes and dramatically stabilize the highly condensed states of chromatin fibers; stabilization of higher order folding occurs through electrostatic neutralization of the linker DNA segments, through a highly positively charged carboxy- terminal domain known as the AKP helix (Ala, Lys, Pro); thought to be involved in specific protein-protein and protein-DNA interactions and play a role in suppressing core histone tail domain acetylation in the chromatin fiber
Probab=86.13  E-value=1.1  Score=35.59  Aligned_cols=34  Identities=21%  Similarity=0.439  Sum_probs=27.9

Q ss_pred             CHHHHHHHHHHcC-CCCCcCHHHHHHHHhccCCCc
Q psy7734         294 SYAQLIVQAVASA-HDKQLTLSGIYSFITKNYPYY  327 (349)
Q Consensus       294 sY~~lI~~Ai~~s-p~~~ltl~~Iy~~i~~~~pyy  327 (349)
                      +|.+||.+||... ..+-.++.-|..||+.+|+.-
T Consensus         6 ~y~~MI~eAI~~l~er~GsS~~aI~kyI~~~y~~~   40 (88)
T cd00073           6 PYSEMVTEAIKALKERKGSSLQAIKKYIEAKYKVD   40 (88)
T ss_pred             CHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCCcc
Confidence            6999999999653 344578999999999998843


No 28 
>KOG4012|consensus
Probab=68.14  E-value=5.7  Score=37.58  Aligned_cols=38  Identities=24%  Similarity=0.485  Sum_probs=31.6

Q ss_pred             CCCHHHHHHHHHHcCCCC-CcCHHHHHHHHhccCCCccc
Q psy7734         292 PYSYAQLIVQAVASAHDK-QLTLSGIYSFITKNYPYYRT  329 (349)
Q Consensus       292 p~sY~~lI~~Ai~~sp~~-~ltl~~Iy~~i~~~~pyy~~  329 (349)
                      .-+|.+||..||..+.++ -.++.-|+.||..+|+.|..
T Consensus        44 ~P~~~~mi~eAi~a~keR~GsS~aAikK~i~~~Y~g~~v   82 (243)
T KOG4012|consen   44 HPPYSEMITEAISALKERKGSSLAAIKKYIAANYPGDDV   82 (243)
T ss_pred             CCcHHHHHHHHHHHhhhcccchHHHHHHHHhhcCccchh
Confidence            335999999999887654 47899999999999998763


No 29 
>KOG0245|consensus
Probab=49.95  E-value=32  Score=38.87  Aligned_cols=63  Identities=17%  Similarity=0.351  Sum_probs=51.0

Q ss_pred             ceeeeecceEEEeecCCCCCcccccCcchhhhcceEEeeecCCC--ceeeecCCCceEecCcceec
Q psy7734          44 FEYMVRQKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEHPN--FFMTCNGKNGVFVDGNSIRH  107 (349)
Q Consensus        44 ~~y~~~~~~i~iGR~s~~~~vdi~lg~~~~ISR~Ha~i~~~~~~--f~l~~~gknG~~v~~~~irh  107 (349)
                      .-|||+.-...|||.+....-||.|. ..+|-.+|+.|+-+.+.  ..|.+-+..-++|||.-|.-
T Consensus       470 LlY~ikeG~TrVG~~~a~~~~DI~Ls-G~~I~~qHC~i~~~~g~~~vtl~p~e~aetyVNGk~v~e  534 (1221)
T KOG0245|consen  470 LLYYIKEGETRVGREDASSRQDIVLS-GQLIREQHCSIRNEGGNDVVTLEPCEDAETYVNGKLVTE  534 (1221)
T ss_pred             EEEEeccCceecCCCCcccCCceEec-chhhhhhceEEEecCCCceEEeccCCccceeEccEEcCC
Confidence            34999999999999988888888862 24688999999988776  77877788889999987643


No 30 
>PF05066 HARE-HTH:  HB1, ASXL, restriction endonuclease HTH domain;  InterPro: IPR007759 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise:  RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors.  RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs.   Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. The delta protein is a dispensable subunit of Bacillus subtilis RNA polymerase (RNAP) that has major effects on the biochemical properties of the purified enzyme. In the presence of delta, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling []. The delta protein, contains two distinct regions, an N-terminal domain and a glutamate and aspartate residue-rich C-terminal region [].; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent; PDB: 2KRC_A.
Probab=47.22  E-value=14  Score=27.69  Aligned_cols=45  Identities=13%  Similarity=0.248  Sum_probs=27.3

Q ss_pred             CCHHHHHHHHHHcCCCCCcCHHHHHHHHhccCCCcccCCCCCcccch
Q psy7734         293 YSYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRTADKGWQVNYT  339 (349)
Q Consensus       293 ~sY~~lI~~Ai~~sp~~~ltl~~Iy~~i~~~~pyy~~~~~gWqnsiR  339 (349)
                      +||..++.+.|.... +.|+.+||++-|.+.--| ....+...++|+
T Consensus         1 mt~~eaa~~vL~~~~-~pm~~~eI~~~i~~~~~~-~~~~k~p~~~i~   45 (72)
T PF05066_consen    1 MTFKEAAYEVLEEAG-RPMTFKEIWEEIQERGLY-KKSGKTPEATIA   45 (72)
T ss_dssp             S-HHHHHHHHHHHH--S-EEHHHHHHHHHHHHTS----GGGGGHHHH
T ss_pred             CCHHHHHHHHHHhcC-CCcCHHHHHHHHHHhCCC-CcccCCHHHHHH
Confidence            467788888887777 568888888888865433 222445555555


No 31 
>COG2958 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.15  E-value=29  Score=33.28  Aligned_cols=32  Identities=9%  Similarity=0.279  Sum_probs=24.6

Q ss_pred             CHHHHHHHHHHcCCCCCcCHHHHHHHHhccCCC
Q psy7734         294 SYAQLIVQAVASAHDKQLTLSGIYSFITKNYPY  326 (349)
Q Consensus       294 sY~~lI~~Ai~~sp~~~ltl~~Iy~~i~~~~py  326 (349)
                      +|..+|...++. .+..+|..|||+|+.+.||-
T Consensus         6 ~~~e~vl~~Lq~-~~ep~t~~eI~eka~e~~~~   37 (307)
T COG2958           6 NLIEIVLSVLQT-SEEPFTAREIAEKAFETFPA   37 (307)
T ss_pred             hhHHHHHHHHHc-cCCCCcHHHHHHHHHHhccH
Confidence            355655555555 77789999999999999984


No 32 
>PF10264 Stork_head:  Winged helix Storkhead-box1 domain;  InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=36.82  E-value=49  Score=26.05  Aligned_cols=34  Identities=15%  Similarity=0.264  Sum_probs=29.4

Q ss_pred             HHHHHHHHH--HcCCCCCcCHHHHHHHHhccCCCcc
Q psy7734         295 YAQLIVQAV--ASAHDKQLTLSGIYSFITKNYPYYR  328 (349)
Q Consensus       295 Y~~lI~~Ai--~~sp~~~ltl~~Iy~~i~~~~pyy~  328 (349)
                      -++.|+.||  +++-+...|+..|.+++.++||--.
T Consensus        12 L~EvlC~~I~dln~~~~~at~E~l~~~L~~~yp~i~   47 (80)
T PF10264_consen   12 LPEVLCWVISDLNAAGQPATQETLREHLRKHYPGIA   47 (80)
T ss_pred             HHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCC
Confidence            567889999  6688888999999999999999654


No 33 
>PF12872 OST-HTH:  OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=34.53  E-value=34  Score=25.30  Aligned_cols=41  Identities=22%  Similarity=0.359  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHcCCC--CCcCHHHHHHHHhccCCCcccCCCCCc
Q psy7734         295 YAQLIVQAVASAHD--KQLTLSGIYSFITKNYPYYRTADKGWQ  335 (349)
Q Consensus       295 Y~~lI~~Ai~~sp~--~~ltl~~Iy~~i~~~~pyy~~~~~gWq  335 (349)
                      -..+|..+|.+.++  +.+.|+++..++.++||-|....=|-.
T Consensus         6 ~~~~l~~ll~~~~~~~g~v~ls~l~~~~~~~~~~f~~~~yG~~   48 (74)
T PF12872_consen    6 LKKLLRELLESQKGEDGWVSLSQLGQEYKKKYPDFDPRDYGFS   48 (74)
T ss_dssp             HHHHHHHHHHHTCTTTSSEEHHHHHHHHHHHHTT--TCCTTSS
T ss_pred             HHHHHHHHHHhCcCCCceEEHHHHHHHHHHHCCCCCccccCCC
Confidence            45788888855543  479999999999999988876666653


No 34 
>KOG1881|consensus
Probab=26.88  E-value=78  Score=34.58  Aligned_cols=53  Identities=23%  Similarity=0.443  Sum_probs=34.8

Q ss_pred             cceEEEeecCCCCCcccccCcchhhhcceEEeeecC--CC---------ceeeecCC-CceEecCccee
Q psy7734          50 QKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEH--PN---------FFMTCNGK-NGVFVDGNSIR  106 (349)
Q Consensus        50 ~~~i~iGR~s~~~~vdi~lg~~~~ISR~Ha~i~~~~--~~---------f~l~~~gk-nG~~v~~~~ir  106 (349)
                      +-..++||-+.   -|+-|.|. -|||-|+.+.|-.  +.         ||++.+|. -|.|+|++.|.
T Consensus       176 ~~~~~fgr~~~---cD~~~eHp-sISr~h~vlQy~~~~~~~p~~s~~~g~~i~dlgsThgt~~NK~rvp  240 (793)
T KOG1881|consen  176 AAACLFGRLGG---CDVALEHP-SISRFHAVLQYKASGPDDPCASNGEGWYIYDLGSTHGTFLNKDRVP  240 (793)
T ss_pred             ceeEEecccCC---CccccccC-cccccceeeeccCCCCCccccCCCCceEEeeccccccceeccccCC
Confidence            34567898762   34555554 4799999999853  23         77777654 67777776543


No 35 
>KOG0615|consensus
Probab=22.31  E-value=56  Score=33.59  Aligned_cols=32  Identities=16%  Similarity=0.247  Sum_probs=24.9

Q ss_pred             HHHHHHHHHcCCCCCcCHHHHHHHHhccCCCcccCCC
Q psy7734         296 AQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRTADK  332 (349)
Q Consensus       296 ~~lI~~Ai~~sp~~~ltl~~Iy~~i~~~~pyy~~~~~  332 (349)
                      ..||...|.=-|+.+-|..|..     +-|||++++.
T Consensus       414 ~dlI~~mL~VdP~~R~s~~eaL-----~hpW~~~~~~  445 (475)
T KOG0615|consen  414 LDLINWMLVVDPENRPSADEAL-----NHPWFKDAPC  445 (475)
T ss_pred             HHHHHHhhEeCcccCcCHHHHh-----cChhhhcccc
Confidence            4688888888999999988854     4688886653


Done!