Query psy7734
Match_columns 349
No_of_seqs 303 out of 1330
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 17:26:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7734.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7734hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vtn_C HNF-3/FORK head DNA-rec 99.9 1E-28 3.5E-33 200.5 2.2 61 288-348 1-61 (102)
2 2hdc_A Protein (transcription 99.9 8.9E-29 3E-33 199.1 1.3 60 289-348 1-60 (97)
3 1kq8_A HFH-1, hepatocyte nucle 99.9 1.8E-28 6.2E-33 198.3 2.9 60 289-348 1-60 (100)
4 2c6y_A Forkhead box protein K2 99.9 1.7E-28 6E-33 201.7 2.7 64 285-348 11-74 (111)
5 2hfh_A Genesis, HFH-2; HNF-3 h 99.9 3.2E-28 1.1E-32 199.4 2.9 61 289-349 2-62 (109)
6 2a07_F Forkhead box protein P2 99.9 1.3E-28 4.3E-33 196.5 0.4 61 289-349 2-62 (93)
7 3bpy_A FORK head domain, forkh 99.9 5.5E-28 1.9E-32 190.2 3.2 62 287-348 2-68 (85)
8 3coa_C Forkhead box protein O1 99.9 1.2E-27 4.2E-32 198.2 2.7 65 284-348 5-74 (117)
9 3l2c_A Forkhead box protein O4 99.9 2.9E-27 9.8E-32 194.4 3.2 64 285-348 19-87 (110)
10 3g73_A Forkhead box protein M1 99.9 1.8E-26 6.1E-31 197.3 2.8 64 285-348 13-77 (142)
11 1e17_A AFX; DNA binding domain 99.9 1.5E-26 5.2E-31 198.6 0.9 65 284-348 34-103 (150)
12 2c6y_A Forkhead box protein K2 99.8 1.4E-20 4.8E-25 154.6 -1.1 96 40-152 15-111 (111)
13 1kq8_A HFH-1, hepatocyte nucle 99.8 2.5E-20 8.4E-25 150.6 -0.1 94 42-152 3-98 (100)
14 2hdc_A Protein (transcription 99.8 8.3E-21 2.8E-25 152.6 -2.9 94 42-152 3-97 (97)
15 2hfh_A Genesis, HFH-2; HNF-3 h 99.8 2.6E-21 8.9E-26 158.4 -6.4 98 40-154 2-100 (109)
16 1vtn_C HNF-3/FORK head DNA-rec 99.7 4.6E-20 1.6E-24 149.6 -3.7 94 42-152 4-98 (102)
17 3coa_C Forkhead box protein O1 99.6 1.1E-16 3.7E-21 132.6 -2.3 97 38-157 8-109 (117)
18 3l2c_A Forkhead box protein O4 99.5 3.3E-16 1.1E-20 128.6 -1.5 87 36-139 19-109 (110)
19 1e17_A AFX; DNA binding domain 99.5 2.5E-16 8.6E-21 135.1 -2.7 89 34-139 33-125 (150)
20 3bpy_A FORK head domain, forkh 99.5 1.1E-15 3.6E-20 120.1 -1.5 77 41-134 5-85 (85)
21 3g73_A Forkhead box protein M1 99.4 3.2E-15 1.1E-19 127.7 -3.8 94 39-151 16-111 (142)
22 2a07_F Forkhead box protein P2 99.3 9.6E-15 3.3E-19 116.3 -5.9 75 40-136 2-77 (93)
23 1lgp_A Cell cycle checkpoint p 98.4 3.2E-07 1.1E-11 75.2 6.2 61 44-107 17-79 (116)
24 1gxc_A CHK2, CDS1, serine/thre 98.4 4.7E-07 1.6E-11 77.7 6.7 72 34-106 28-113 (149)
25 1g6g_A Protein kinase RAD53; b 98.2 1.7E-06 6E-11 72.1 6.7 53 52-107 37-90 (127)
26 1r21_A Antigen KI-67; beta san 98.2 2.7E-06 9.1E-11 70.9 7.0 59 44-106 26-85 (128)
27 3po8_A RV0020C protein, putati 98.2 2.8E-06 9.6E-11 67.7 6.2 64 39-106 11-75 (100)
28 1uht_A Expressed protein; FHA 98.1 2E-06 6.9E-11 70.6 5.2 60 44-106 25-86 (118)
29 3gqs_A Adenylate cyclase-like 98.1 3.4E-06 1.2E-10 68.0 6.0 61 44-107 17-80 (106)
30 2pie_A E3 ubiquitin-protein li 98.1 4.2E-06 1.4E-10 70.8 6.7 63 44-107 20-86 (138)
31 3hx1_A SLR1951 protein; P74513 98.1 4.7E-06 1.6E-10 70.0 5.8 68 35-106 12-92 (131)
32 1g3g_A Protien kinase SPK1; FH 98.0 4E-06 1.4E-10 73.0 5.4 54 51-107 64-118 (164)
33 3oun_A Putative uncharacterize 98.0 5.2E-06 1.8E-10 72.0 6.0 64 39-106 73-137 (157)
34 2xt9_B Putative signal transdu 98.0 5.8E-06 2E-10 67.7 5.7 59 44-106 24-83 (115)
35 2jpe_A Nuclear inhibitor of pr 98.0 2.7E-06 9.3E-11 72.1 3.4 67 37-106 38-110 (140)
36 2csw_A Ubiquitin ligase protei 98.0 7.3E-06 2.5E-10 69.9 5.9 58 49-107 34-94 (145)
37 2jqj_A DNA damage response pro 98.0 9E-06 3.1E-10 69.7 6.3 60 44-107 30-98 (151)
38 2kb3_A Oxoglutarate dehydrogen 98.0 6.3E-06 2.1E-10 70.3 5.2 60 43-106 58-118 (143)
39 1wln_A Afadin; beta sandwich, 98.0 7.8E-06 2.7E-10 67.4 5.3 60 44-106 29-90 (120)
40 2kfu_A RV1827 PThr 22; FHA dom 97.9 7.2E-06 2.5E-10 71.5 4.9 59 44-106 68-127 (162)
41 3va4_A Mediator of DNA damage 97.9 2.1E-05 7.2E-10 66.2 7.2 58 44-105 38-98 (132)
42 1mzk_A Kinase associated prote 97.9 1.5E-05 5.1E-10 67.4 5.5 58 45-106 21-86 (139)
43 1dmz_A Protein (protein kinase 97.8 1.1E-05 3.8E-10 69.8 4.0 59 44-106 18-93 (158)
44 3els_A PRE-mRNA leakage protei 97.8 1.7E-05 5.8E-10 68.8 4.9 62 45-107 49-128 (158)
45 4h87_A Kanadaptin; FHA domain 97.8 2.3E-05 7.9E-10 65.7 5.2 59 45-107 34-105 (130)
46 1qu5_A Protein kinase SPK1; FH 97.8 1.6E-05 5.4E-10 70.6 4.2 59 44-106 42-117 (182)
47 2ff4_A Probable regulatory pro 97.7 3.7E-05 1.3E-09 75.3 5.7 60 42-105 297-357 (388)
48 3fm8_A Kinesin-like protein KI 97.6 5E-05 1.7E-09 63.2 5.2 58 44-106 42-100 (124)
49 3elv_A PRE-mRNA leakage protei 97.5 7.7E-05 2.6E-09 67.2 5.4 62 45-107 96-175 (205)
50 4ejq_A Kinesin-like protein KI 97.5 0.00015 5.1E-09 62.4 5.9 62 44-106 54-120 (154)
51 3huf_A DNA repair and telomere 97.2 0.00041 1.4E-08 66.3 6.0 62 45-107 15-88 (325)
52 3kt9_A Aprataxin; FHA domain, 97.0 0.00081 2.8E-08 54.1 4.9 54 49-108 21-76 (102)
53 3uv0_A Mutator 2, isoform B; F 96.8 0.0014 4.9E-08 52.3 5.0 61 40-105 10-71 (102)
54 3i6u_A CDS1, serine/threonine- 96.5 0.0033 1.1E-07 61.4 6.5 73 35-107 9-94 (419)
55 2brf_A Bifunctional polynucleo 96.1 0.0052 1.8E-07 50.0 4.6 52 50-107 28-81 (110)
56 1ujx_A Polynucleotide kinase 3 96.0 0.012 4.2E-07 48.4 6.4 68 34-107 14-88 (119)
57 1yj5_C 5' polynucleotide kinas 95.9 0.0081 2.8E-07 50.9 4.7 68 34-107 7-81 (143)
58 4egx_A Kinesin-like protein KI 95.3 0.024 8.1E-07 50.0 5.8 62 44-106 84-150 (184)
59 4a0e_A YSCD, type III secretio 94.1 0.04 1.4E-06 45.6 4.0 60 46-110 19-79 (123)
60 1uss_A Histone H1; DNA binding 82.3 1.3 4.4E-05 34.2 4.0 32 294-325 9-41 (88)
61 1uhm_A Histone H1, histone HHO 80.6 1.1 3.9E-05 33.6 3.1 33 294-326 6-39 (78)
62 1wv3_A Similar to DNA segregat 79.2 1.3 4.4E-05 40.2 3.5 56 44-107 85-146 (238)
63 1hst_A Histone H5; chromosomal 78.1 1.8 6E-05 33.6 3.5 32 294-325 9-41 (90)
64 1ust_A Histone H1; DNA binding 74.1 1.8 6.3E-05 33.7 2.6 34 293-326 8-42 (93)
65 2rqp_A Heterochromatin protein 69.7 2.5 8.7E-05 32.4 2.5 35 293-327 10-45 (88)
66 2lso_A Histone H1X; structural 57.4 3 0.0001 31.7 0.0 33 293-325 6-39 (83)
67 1ghc_A GH1; chromosomal protei 42.3 6.2 0.00021 29.0 0.4 30 294-323 5-35 (75)
68 4aw0_A HPDK1, 3-phosphoinositi 28.2 19 0.00064 33.7 1.3 39 295-336 261-301 (311)
69 2kzv_A Uncharacterized protein 23.3 1.6E+02 0.0053 22.5 5.5 43 293-335 7-51 (92)
No 1
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A
Probab=99.94 E-value=1e-28 Score=200.47 Aligned_cols=61 Identities=39% Similarity=0.640 Sum_probs=59.7
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCcCHHHHHHHHhccCCCcccCCCCCcccchhhhccCccc
Q psy7734 288 DSKPPYSYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRTADKGWQVNYTYLDTTSVVA 348 (349)
Q Consensus 288 ~~kPp~sY~~lI~~Ai~~sp~~~ltl~~Iy~~i~~~~pyy~~~~~gWqnsiRhnLs~~~~~ 348 (349)
+.||||||++||+|||+++|+++|||+|||+||+++||||+.++.|||||||||||...||
T Consensus 1 h~KPp~SY~~LI~~AI~~sp~~~LtL~eIY~~I~~~fpyyr~~~~gWqNSIRHNLSln~~F 61 (102)
T 1vtn_C 1 HAKPPYSYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCF 61 (102)
T ss_dssp CCCCSSCHHHHHHHHHHTSTTSCBCHHHHHHHHHHHCGGGGSCHHHHHHHHHHHHHHCTTE
T ss_pred CcCcCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHcCCccccCCCchhhhhhhhhhhccce
Confidence 4799999999999999999999999999999999999999999999999999999999998
No 2
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=99.94 E-value=8.9e-29 Score=199.06 Aligned_cols=60 Identities=40% Similarity=0.651 Sum_probs=58.9
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCcCHHHHHHHHhccCCCcccCCCCCcccchhhhccCccc
Q psy7734 289 SKPPYSYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRTADKGWQVNYTYLDTTSVVA 348 (349)
Q Consensus 289 ~kPp~sY~~lI~~Ai~~sp~~~ltl~~Iy~~i~~~~pyy~~~~~gWqnsiRhnLs~~~~~ 348 (349)
.||||||++||+|||+++|+++|||+|||+||+++||||+.++.|||||||||||...||
T Consensus 1 ~KPp~SY~~LI~~AI~~sp~~~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLSln~~F 60 (97)
T 2hdc_A 1 VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCF 60 (97)
T ss_dssp CCCCCCHHHHHHHHHHTCTTTCBCHHHHHHHHHHHCHHHHHHCSSHHHHHHHHHHHHHCC
T ss_pred CcCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHhchhhccCCcceehhhhhhhhhhhhe
Confidence 599999999999999999999999999999999999999999999999999999999998
No 3
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=99.94 E-value=1.8e-28 Score=198.30 Aligned_cols=60 Identities=28% Similarity=0.560 Sum_probs=53.6
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCcCHHHHHHHHhccCCCcccCCCCCcccchhhhccCccc
Q psy7734 289 SKPPYSYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRTADKGWQVNYTYLDTTSVVA 348 (349)
Q Consensus 289 ~kPp~sY~~lI~~Ai~~sp~~~ltl~~Iy~~i~~~~pyy~~~~~gWqnsiRhnLs~~~~~ 348 (349)
.||||||++||+|||+++|+++|||+|||+||+++||||+.++.|||||||||||...||
T Consensus 1 ~KPp~SY~~LI~~AI~~sp~~~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLSln~~F 60 (100)
T 1kq8_A 1 PKPPYSYIALITMAIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCF 60 (100)
T ss_dssp ------CHHHHHHHHTTSSSSCBCHHHHHHHHHHHCTTGGGTCSCCHHHHHHHHHHHTCC
T ss_pred CcCCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHhCccccCCCCceecccchheehhhee
Confidence 489999999999999999999999999999999999999999999999999999999998
No 4
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A
Probab=99.94 E-value=1.7e-28 Score=201.68 Aligned_cols=64 Identities=64% Similarity=0.933 Sum_probs=60.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHcCCCCCcCHHHHHHHHhccCCCcccCCCCCcccchhhhccCccc
Q psy7734 285 SQDDSKPPYSYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRTADKGWQVNYTYLDTTSVVA 348 (349)
Q Consensus 285 ~~~~~kPp~sY~~lI~~Ai~~sp~~~ltl~~Iy~~i~~~~pyy~~~~~gWqnsiRhnLs~~~~~ 348 (349)
...+.||||||++||+|||+++|+++|||+|||+||+++||||+.++.|||||||||||...||
T Consensus 11 ~~~~~KPp~SYa~LI~~AI~~sp~~~LtL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLSln~~F 74 (111)
T 2c6y_A 11 RGSDSKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYF 74 (111)
T ss_dssp ---CCCCSSCHHHHHHHHHHTSTTSCEEHHHHHHHHHHHCTTSCTTCHHHHHHHHHHHHHSTTE
T ss_pred CCCCCCCCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHcCCccccCCCeeecchhHHhhhhhhh
Confidence 3467999999999999999999999999999999999999999999999999999999999998
No 5
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=99.94 E-value=3.2e-28 Score=199.38 Aligned_cols=61 Identities=39% Similarity=0.627 Sum_probs=59.6
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCcCHHHHHHHHhccCCCcccCCCCCcccchhhhccCcccC
Q psy7734 289 SKPPYSYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRTADKGWQVNYTYLDTTSVVAW 349 (349)
Q Consensus 289 ~kPp~sY~~lI~~Ai~~sp~~~ltl~~Iy~~i~~~~pyy~~~~~gWqnsiRhnLs~~~~~~ 349 (349)
.||||||++||+|||+++|+++|||+|||+||+++||||+.++.|||||||||||...||.
T Consensus 2 ~KPp~SYa~LI~~AI~~sp~~~LtL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLSln~~F~ 62 (109)
T 2hfh_A 2 VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 62 (109)
T ss_dssp CCCCCCHHHHHHHHHHTCSSSCBCHHHHHHHHHTTCHHHHTTCGGGHHHHHHHHHHHTCCB
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHhcchhccCCcccchhhhhhhhhhhhhh
Confidence 6999999999999999999999999999999999999999999999999999999999983
No 6
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F
Probab=99.94 E-value=1.3e-28 Score=196.50 Aligned_cols=61 Identities=33% Similarity=0.602 Sum_probs=59.6
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCcCHHHHHHHHhccCCCcccCCCCCcccchhhhccCcccC
Q psy7734 289 SKPPYSYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRTADKGWQVNYTYLDTTSVVAW 349 (349)
Q Consensus 289 ~kPp~sY~~lI~~Ai~~sp~~~ltl~~Iy~~i~~~~pyy~~~~~gWqnsiRhnLs~~~~~~ 349 (349)
.||||||++||+|||+++|+++|||+|||+||+++|||||.+..|||||||||||...||.
T Consensus 2 ~KPp~SY~~LI~~AI~~sp~~~ltL~eIY~~i~~~fpyyr~~~~gWkNSIRHNLSln~~F~ 62 (93)
T 2a07_F 2 VRPPFTYATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCFV 62 (93)
T ss_dssp CCCSCCHHHHHHHHHHHSTTSCBCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCTTBC
T ss_pred CCCCCCHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCccccCCCccccccceeeehhhcee
Confidence 6999999999999999999999999999999999999999999999999999999999984
No 7
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens}
Probab=99.94 E-value=5.5e-28 Score=190.19 Aligned_cols=62 Identities=31% Similarity=0.512 Sum_probs=58.8
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCCCcCHHHHHHHHhccCCCcccC-----CCCCcccchhhhccCccc
Q psy7734 287 DDSKPPYSYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRTA-----DKGWQVNYTYLDTTSVVA 348 (349)
Q Consensus 287 ~~~kPp~sY~~lI~~Ai~~sp~~~ltl~~Iy~~i~~~~pyy~~~-----~~gWqnsiRhnLs~~~~~ 348 (349)
.+.||||||++||+|||+++|+++|||+|||+||+++||||+.+ ..|||||||||||...||
T Consensus 2 rn~kp~~SY~~LI~~Ai~~sp~~~ltL~eIY~~i~~~fpyy~~~~~~~s~~gWqNSIRHNLSln~~F 68 (85)
T 3bpy_A 2 RNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKF 68 (85)
T ss_dssp CBTTBSCCHHHHHHHHHHHSTTSCBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHHHCTTE
T ss_pred CCCcCCCCHHHHHHHHHHhCCcCCccHHHHHHHHHHhCcchhcCccCccCCCcchhhhhhccHhhhh
Confidence 45899999999999999999999999999999999999999976 469999999999999998
No 8
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A
Probab=99.93 E-value=1.2e-27 Score=198.24 Aligned_cols=65 Identities=31% Similarity=0.505 Sum_probs=60.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHcCCCCCcCHHHHHHHHhccCCCcccCC-----CCCcccchhhhccCccc
Q psy7734 284 ISQDDSKPPYSYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRTAD-----KGWQVNYTYLDTTSVVA 348 (349)
Q Consensus 284 ~~~~~~kPp~sY~~lI~~Ai~~sp~~~ltl~~Iy~~i~~~~pyy~~~~-----~gWqnsiRhnLs~~~~~ 348 (349)
++..+.||||||++||+|||+++|+++|||+|||+||+++||||++++ .|||||||||||...||
T Consensus 5 ~s~~n~kPp~SYa~LI~~AI~~sp~~~LTL~eIY~~I~~~fPyyr~~~d~~s~~gWqNSIRHNLSln~~F 74 (117)
T 3coa_C 5 SSRRNAWGNLSYADLITKAIESSAEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWKNSIRHNLSLHSKF 74 (117)
T ss_dssp --CCBTTBSCCHHHHHHHHHHTSTTSCBCHHHHHHHHHHHCGGGTTCCSHHHHHHHHHHHHHHHHHCTTE
T ss_pred cCCCCCCCCCCHHHHHHHHHHhCCCCCccHHHHHHHHHHhCcccccCCCCcccccchhccchheecchhh
Confidence 467789999999999999999999999999999999999999999875 79999999999999998
No 9
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} SCOP: a.4.5.14 PDB: 3co6_C*
Probab=99.93 E-value=2.9e-27 Score=194.42 Aligned_cols=64 Identities=31% Similarity=0.515 Sum_probs=60.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHcCCCCCcCHHHHHHHHhccCCCcccC-----CCCCcccchhhhccCccc
Q psy7734 285 SQDDSKPPYSYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRTA-----DKGWQVNYTYLDTTSVVA 348 (349)
Q Consensus 285 ~~~~~kPp~sY~~lI~~Ai~~sp~~~ltl~~Iy~~i~~~~pyy~~~-----~~gWqnsiRhnLs~~~~~ 348 (349)
+..+.||||||++||+|||+++|+++|||+|||+||+++|||||.+ ..|||||||||||...||
T Consensus 19 ~~~~~kPpySY~~LI~~AI~~sp~~~LtL~eIY~~I~~~fPyyr~~~~~~s~~gWqNSIRHNLSln~~F 87 (110)
T 3l2c_A 19 SRRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKF 87 (110)
T ss_dssp -CCBTTBSCCHHHHHHHHHHHSTTSCBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHHHCTTE
T ss_pred cCCCCCCCCCHHHHHHHHHHhCCccCcCHHHHHHHHHHhCchhhcCccccCCCCcccchhhhccHhhhh
Confidence 5677999999999999999999999999999999999999999976 469999999999999998
No 10
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens}
Probab=99.92 E-value=1.8e-26 Score=197.29 Aligned_cols=64 Identities=30% Similarity=0.619 Sum_probs=60.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHcCCCCCcCHHHHHHHHhccCCCccc-CCCCCcccchhhhccCccc
Q psy7734 285 SQDDSKPPYSYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRT-ADKGWQVNYTYLDTTSVVA 348 (349)
Q Consensus 285 ~~~~~kPp~sY~~lI~~Ai~~sp~~~ltl~~Iy~~i~~~~pyy~~-~~~gWqnsiRhnLs~~~~~ 348 (349)
.....||||||++||+|||+++|+++|||+|||+||+++|||||. ++.|||||||||||...||
T Consensus 13 ~~~~~KPpySYa~LI~~AI~~sp~~~LTL~eIY~~I~~~fPyyr~~~~~gWqNSIRHNLSln~~F 77 (142)
T 3g73_A 13 NSVSERPPYSYMAMIQFAINSTERKRMTLKDIYTWIEDHFPYFKHIAKPGWKNSIRHNLSLHDMF 77 (142)
T ss_dssp -CTTSCCSSCHHHHHHHHHHTSTTSEECHHHHHHHHHHHCTHHHHTSCTTHHHHHHHHHHHCTTE
T ss_pred ccCCCCCCCCHHHHHHHHHHhCCCCCcCHHHHHHHHHHhCCCccccCCCCccchhhhhhhhhhhh
Confidence 345689999999999999999999999999999999999999998 8999999999999999998
No 11
>1e17_A AFX; DNA binding domain, winged helix; NMR {Homo sapiens} SCOP: a.4.5.14
Probab=99.92 E-value=1.5e-26 Score=198.56 Aligned_cols=65 Identities=31% Similarity=0.484 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHcCCCCCcCHHHHHHHHhccCCCcccC-----CCCCcccchhhhccCccc
Q psy7734 284 ISQDDSKPPYSYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRTA-----DKGWQVNYTYLDTTSVVA 348 (349)
Q Consensus 284 ~~~~~~kPp~sY~~lI~~Ai~~sp~~~ltl~~Iy~~i~~~~pyy~~~-----~~gWqnsiRhnLs~~~~~ 348 (349)
....+.||||||++||+|||+++|+++|||+|||+||+++||||+++ ..|||||||||||...||
T Consensus 34 ~~~rn~kPp~SYa~LI~~AI~sSp~k~LTL~eIY~wI~~~fPYfr~~~d~~s~~gWqNSIRHNLSLnk~F 103 (150)
T 1e17_A 34 GSRRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKF 103 (150)
T ss_dssp -CCCCTTCSCCHHHHHHHHHHHSSSCCEEHHHHHHHHHHHCGGGHHHHTSTTHHHHHHHHHHHHHSSTTE
T ss_pred CCCCCCCCCCCHHHHHHHHHHhCCCCCccHHHHHHHHHHhCchhccCCCCccccchhhccceeeeeeeee
Confidence 35677899999999999999999999999999999999999999975 379999999999999998
No 12
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A
Probab=99.77 E-value=1.4e-20 Score=154.61 Aligned_cols=96 Identities=55% Similarity=0.893 Sum_probs=80.8
Q ss_pred cccCceeeeecceEEEeecC-CCCCcccccCcchhhhcceEEeeecCCCceeeecCCCceEecCcceecccccccceecc
Q psy7734 40 QGREFEYMVRQKRITIGRNS-SRGDVDVNMGLSSFISRRHIEIFFEHPNFFMTCNGKNGVFVDGNSIRHNLSLNRYFIKV 118 (349)
Q Consensus 40 ~g~~~~y~~~~~~i~iGR~s-~~~~vdi~lg~~~~ISR~Ha~i~~~~~~f~l~~~gknG~~v~~~~irhnLSln~~f~kv 118 (349)
..++++|... |.++..+ +.+.+++. +||+||..++ ++|. ....|| +||||||||||+||+||
T Consensus 15 ~KPp~SYa~L---I~~AI~~sp~~~LtL~-eIY~~I~~~f-------Pyyr---~~~~gW---qNSIRHNLSln~~F~Kv 77 (111)
T 2c6y_A 15 SKPPYSYAQL---IVQAITMAPDKQLTLN-GIYTHITKNY-------PYYR---TADKGW---QNSIRHNLSLNRYFIKV 77 (111)
T ss_dssp CCCSSCHHHH---HHHHHHTSTTSCEEHH-HHHHHHHHHC-------TTSC---TTCHHH---HHHHHHHHHHSTTEEEE
T ss_pred CCCCCCHHHH---HHHHHHhCCCCCCcHH-HHHHHHHHcC-------Cccc---cCCCee---ecchhHHhhhhhhhccc
Confidence 4567888764 6666554 45678888 9999998886 4433 357899 99999999999999999
Q ss_pred CCCCCCCCCceeEEeCCCchhhhHHHHhhhhccC
Q psy7734 119 PRSQEEPGKGSFWRIDPGSEHKLIEQAFRRRRQR 152 (349)
Q Consensus 119 ~r~~~~~GkG~~w~l~p~~~~~~~~~~~~~rr~~ 152 (349)
+|..+++|||+||+|+|+++.+|+++.|+|||+|
T Consensus 78 ~r~~~~~GKG~~W~l~p~~~~~~~~~~~r~rr~r 111 (111)
T 2c6y_A 78 PRSQEEPGKGSFWRIDPASESKLIEQAFRKRRPR 111 (111)
T ss_dssp CCCTTSCCSSCEEEECHHHHHHHHHHHTCCCCCC
T ss_pred cCCCCCCCCcceEEeChhHHHhhhcccccccCCC
Confidence 9999999999999999999999999999988765
No 13
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=99.77 E-value=2.5e-20 Score=150.65 Aligned_cols=94 Identities=35% Similarity=0.684 Sum_probs=59.7
Q ss_pred cCceeeeecceEEEeecC-CCCCcccccCcchhhhcceEEeeecCCCceeeecCCCceEecCcceecccccccceeccCC
Q psy7734 42 REFEYMVRQKRITIGRNS-SRGDVDVNMGLSSFISRRHIEIFFEHPNFFMTCNGKNGVFVDGNSIRHNLSLNRYFIKVPR 120 (349)
Q Consensus 42 ~~~~y~~~~~~i~iGR~s-~~~~vdi~lg~~~~ISR~Ha~i~~~~~~f~l~~~gknG~~v~~~~irhnLSln~~f~kv~r 120 (349)
++++|... |.++..+ +.+++++. +||+||..++ ++|. ....|| +||||||||||+||+||++
T Consensus 3 Pp~SY~~L---I~~AI~~sp~~~ltL~-eIY~~i~~~f-------pyyr---~~~~gW---qNSIRHNLSln~~F~kv~r 65 (100)
T 1kq8_A 3 PPYSYIAL---ITMAIRDSAGGRLTLA-EINEYLMGKF-------PFFR---GSYTGW---RNSVRHNLSLNDCFVKVLR 65 (100)
T ss_dssp ----CHHH---HHHHHTTSSSSCBCHH-HHHHHHHHHC-------TTGG---GTCSCC---HHHHHHHHHHHTCCEECSS
T ss_pred CCCCHHHH---HHHHHHhCCCCCCcHH-HHHHHHHHhC-------cccc---CCCCce---ecccchheehhheeeecCC
Confidence 34555543 5556544 45677888 9999998886 3332 357899 9999999999999999999
Q ss_pred CCCCC-CCceeEEeCCCchhhhHHHHhhhhccC
Q psy7734 121 SQEEP-GKGSFWRIDPGSEHKLIEQAFRRRRQR 152 (349)
Q Consensus 121 ~~~~~-GkG~~w~l~p~~~~~~~~~~~~~rr~~ 152 (349)
+.+++ |||+||+|+|+++.+|.++.|+|||+|
T Consensus 66 ~~~~p~gkg~~W~l~p~~~~~f~~g~~~rrr~r 98 (100)
T 1kq8_A 66 DPSRPWGKDNYWMLNPNSEYTFADGVFRRRRYR 98 (100)
T ss_dssp CSCCSSSCCCCEECCC-----------------
T ss_pred CCCCCCCCCeEEEECcCHHHHHhCCCcccCCCC
Confidence 98888 999999999999999999999988876
No 14
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=99.77 E-value=8.3e-21 Score=152.60 Aligned_cols=94 Identities=39% Similarity=0.739 Sum_probs=76.5
Q ss_pred cCceeeeecceEEEee-cCCCCCcccccCcchhhhcceEEeeecCCCceeeecCCCceEecCcceecccccccceeccCC
Q psy7734 42 REFEYMVRQKRITIGR-NSSRGDVDVNMGLSSFISRRHIEIFFEHPNFFMTCNGKNGVFVDGNSIRHNLSLNRYFIKVPR 120 (349)
Q Consensus 42 ~~~~y~~~~~~i~iGR-~s~~~~vdi~lg~~~~ISR~Ha~i~~~~~~f~l~~~gknG~~v~~~~irhnLSln~~f~kv~r 120 (349)
++++|... |.++. +++.+++++. +||+||..++ .||-. ...|| +||||||||||+||+||+|
T Consensus 3 Pp~SY~~L---I~~AI~~sp~~~ltL~-eIY~~i~~~f--------pyyr~--~~~gW---qNSIRHNLSln~~F~Kv~r 65 (97)
T 2hdc_A 3 PPYSYIAL---ITMAILQSPQKKLTLS-GICEFISNRF--------PYYRE--KFPAW---QNSIRHNLSLNDCFVKIPR 65 (97)
T ss_dssp CCCCHHHH---HHHHHHTCTTTCBCHH-HHHHHHHHHC--------HHHHH--HCSSH---HHHHHHHHHHHHCCEEECS
T ss_pred CCCCHHHH---HHHHHHhCCCCCCCHH-HHHHHHHHhc--------hhhcc--CCcce---ehhhhhhhhhhhheeecCC
Confidence 44555543 55554 4456678888 9999998886 33332 35799 9999999999999999999
Q ss_pred CCCCCCCceeEEeCCCchhhhHHHHhhhhccC
Q psy7734 121 SQEEPGKGSFWRIDPGSEHKLIEQAFRRRRQR 152 (349)
Q Consensus 121 ~~~~~GkG~~w~l~p~~~~~~~~~~~~~rr~~ 152 (349)
+.+++|||+||+|+|+++.+|.++.|+|||+|
T Consensus 66 ~~~~~gKg~~W~l~p~~~~~f~~g~~~rrr~r 97 (97)
T 2hdc_A 66 EPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKR 97 (97)
T ss_dssp CTTCSSSCCEEECCTTHHHHHHHSCCCSSSCC
T ss_pred CCCCCCCcceEEECcCHHHHHhCCCccCCCCC
Confidence 99999999999999999999999999877764
No 15
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=99.76 E-value=2.6e-21 Score=158.41 Aligned_cols=98 Identities=38% Similarity=0.668 Sum_probs=75.5
Q ss_pred cccCceeeeecceEEEeec-CCCCCcccccCcchhhhcceEEeeecCCCceeeecCCCceEecCcceecccccccceecc
Q psy7734 40 QGREFEYMVRQKRITIGRN-SSRGDVDVNMGLSSFISRRHIEIFFEHPNFFMTCNGKNGVFVDGNSIRHNLSLNRYFIKV 118 (349)
Q Consensus 40 ~g~~~~y~~~~~~i~iGR~-s~~~~vdi~lg~~~~ISR~Ha~i~~~~~~f~l~~~gknG~~v~~~~irhnLSln~~f~kv 118 (349)
..++++|... |.++.. |+.+++++. +||+||..++ .||- ....|| +||||||||||+||+||
T Consensus 2 ~KPp~SYa~L---I~~AI~~sp~~~LtL~-eIY~~I~~~f--------Pyyr--~~~~gW---qNSIRHNLSln~~F~Kv 64 (109)
T 2hfh_A 2 VKPPYSYIAL---ITMAILQSPQKKLTLS-GICEFISNRF--------PYYR--EKFPAW---QNSIRHNLSLNDCFVKI 64 (109)
T ss_dssp CCCCCCHHHH---HHHHHHTCSSSCBCHH-HHHHHHHTTC--------HHHH--TTCGGG---HHHHHHHHHHHTCCBCC
T ss_pred CCCCCCHHHH---HHHHHHhCCCCCCcHH-HHHHHHHHhc--------chhc--cCCccc---chhhhhhhhhhhhhhcC
Confidence 4566777654 555654 456678888 9999998886 3332 346799 99999999999999999
Q ss_pred CCCCCCCCCceeEEeCCCchhhhHHHHhhhhccCCC
Q psy7734 119 PRSQEEPGKGSFWRIDPGSEHKLIEQAFRRRRQRGV 154 (349)
Q Consensus 119 ~r~~~~~GkG~~w~l~p~~~~~~~~~~~~~rr~~~~ 154 (349)
+|+.+++|||+||+|+|+++.+|.++.|+|||++..
T Consensus 65 ~r~~~~~GKG~~W~l~p~~~~~f~~g~~~Rrr~~~~ 100 (109)
T 2hfh_A 65 PREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKRFK 100 (109)
T ss_dssp TTCTTSCSSCCCBBCCTTCCHHHHSSSCC-------
T ss_pred CCCCCCCCCceeEEECccHHHHHhCCCcccCccccc
Confidence 999999999999999999999999999988887754
No 16
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A
Probab=99.73 E-value=4.6e-20 Score=149.57 Aligned_cols=94 Identities=30% Similarity=0.591 Sum_probs=77.1
Q ss_pred cCceeeeecceEEEeecC-CCCCcccccCcchhhhcceEEeeecCCCceeeecCCCceEecCcceecccccccceeccCC
Q psy7734 42 REFEYMVRQKRITIGRNS-SRGDVDVNMGLSSFISRRHIEIFFEHPNFFMTCNGKNGVFVDGNSIRHNLSLNRYFIKVPR 120 (349)
Q Consensus 42 ~~~~y~~~~~~i~iGR~s-~~~~vdi~lg~~~~ISR~Ha~i~~~~~~f~l~~~gknG~~v~~~~irhnLSln~~f~kv~r 120 (349)
++++|... |.++..+ +.+.+++. +||+||..++ .||- ....|| +||||||||||+||+||++
T Consensus 4 Pp~SY~~L---I~~AI~~sp~~~LtL~-eIY~~I~~~f--------pyyr--~~~~gW---qNSIRHNLSln~~F~kv~r 66 (102)
T 1vtn_C 4 PPYSYISL---ITMAIQQAPGKMLTLS-EIYQWIMDLF--------PYYR--ENQQRW---QNSIRHSLSFNDCFVKVAR 66 (102)
T ss_dssp CSSCHHHH---HHHHHHTSTTSCBCHH-HHHHHHHHHC--------GGGG--SCHHHH---HHHHHHHHHHCTTEEEECC
T ss_pred cCCCHHHH---HHHHHHhCCCCCCcHH-HHHHHHHHcC--------Cccc--cCCCch---hhhhhhhhhhccceEecCC
Confidence 45666553 5556544 45667888 9999998886 3332 346899 9999999999999999999
Q ss_pred CCCCCCCceeEEeCCCchhhhHHHHhhhhccC
Q psy7734 121 SQEEPGKGSFWRIDPGSEHKLIEQAFRRRRQR 152 (349)
Q Consensus 121 ~~~~~GkG~~w~l~p~~~~~~~~~~~~~rr~~ 152 (349)
..+++|||+||+|+|+++.+|.++.|+|||+|
T Consensus 67 ~~~~~GKG~~W~l~p~~~~~f~~g~~~rr~~~ 98 (102)
T 1vtn_C 67 SPDKPGKGSYWALHPSSGNMFENGCYLRRQKR 98 (102)
T ss_dssp CSCSSCSSCEEEECGGGCSTTCSSCSSSCSSC
T ss_pred CCCCCCCcceEEECcCHHHHhhcCCeeccccc
Confidence 99999999999999999999999998887776
No 17
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A
Probab=99.56 E-value=1.1e-16 Score=132.57 Aligned_cols=97 Identities=28% Similarity=0.457 Sum_probs=62.8
Q ss_pred eecccCceeeeecceEEEeecC-CCCCcccccCcchhhhcceEEeeecCCCceeeecC----CCceEecCcceecccccc
Q psy7734 38 KLQGREFEYMVRQKRITIGRNS-SRGDVDVNMGLSSFISRRHIEIFFEHPNFFMTCNG----KNGVFVDGNSIRHNLSLN 112 (349)
Q Consensus 38 ~l~g~~~~y~~~~~~i~iGR~s-~~~~vdi~lg~~~~ISR~Ha~i~~~~~~f~l~~~g----knG~~v~~~~irhnLSln 112 (349)
+-..++++|... |.+++.+ +.+.++|. +||+||..++ .||-. .+ ..|| +|+||||||||
T Consensus 8 ~n~kPp~SYa~L---I~~AI~~sp~~~LTL~-eIY~~I~~~f--------Pyyr~-~~d~~s~~gW---qNSIRHNLSln 71 (117)
T 3coa_C 8 RNAWGNLSYADL---ITKAIESSAEKRLTLS-QIYEWMVKSV--------PYFKD-KGDSNSSAGW---KNSIRHNLSLH 71 (117)
T ss_dssp CBTTBSCCHHHH---HHHHHHTSTTSCBCHH-HHHHHHHHHC--------GGGTT-CCSHHHHHHH---HHHHHHHHHHC
T ss_pred CCCCCCCCHHHH---HHHHHHhCCCCCccHH-HHHHHHHHhC--------ccccc-CCCCcccccc---hhccchheecc
Confidence 344577888775 6667655 45677888 9999998886 33322 22 4799 99999999999
Q ss_pred cceeccCCCCCCCCCceeEEeCCCchhhhHHHHhhhhccCCCCCc
Q psy7734 113 RYFIKVPRSQEEPGKGSFWRIDPGSEHKLIEQAFRRRRQRGVPCF 157 (349)
Q Consensus 113 ~~f~kv~r~~~~~GkG~~w~l~p~~~~~~~~~~~~~rr~~~~~~~ 157 (349)
+||+||++ +++|||+||+|+|++... -+++|+|++.++
T Consensus 72 ~~F~Kv~~--~~~GKg~~W~l~p~~~~~-----~~~~Rrr~~s~~ 109 (117)
T 3coa_C 72 SKFIRVQN--EGTGKSSWWMLNPEGGKS-----GKSPRRRAASMD 109 (117)
T ss_dssp TTEEEECC--SSTTCCCEEEECC----------------------
T ss_pred hhhccccc--CCCCCcceEEECcccccc-----CccccccCCCCC
Confidence 99999998 578999999999997542 144455554433
No 18
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} SCOP: a.4.5.14 PDB: 3co6_C*
Probab=99.53 E-value=3.3e-16 Score=128.56 Aligned_cols=87 Identities=29% Similarity=0.446 Sum_probs=63.7
Q ss_pred eeeecccCceeeeecceEEEee-cCCCCCcccccCcchhhhcceEEeeecCCCceeee---cCCCceEecCcceeccccc
Q psy7734 36 IAKLQGREFEYMVRQKRITIGR-NSSRGDVDVNMGLSSFISRRHIEIFFEHPNFFMTC---NGKNGVFVDGNSIRHNLSL 111 (349)
Q Consensus 36 ~A~l~g~~~~y~~~~~~i~iGR-~s~~~~vdi~lg~~~~ISR~Ha~i~~~~~~f~l~~---~gknG~~v~~~~irhnLSl 111 (349)
.-+-..++++|... |.++. +++.+++++. +||+||..++ .||-.+ ....|| +|+|||||||
T Consensus 19 ~~~~~kPpySY~~L---I~~AI~~sp~~~LtL~-eIY~~I~~~f--------Pyyr~~~~~~s~~gW---qNSIRHNLSl 83 (110)
T 3l2c_A 19 SRRNAWGNQSYAEL---ISQAIESAPEKRLTLA-QIYEWMVRTV--------PYFKDKGDSNSSAGW---KNSIRHNLSL 83 (110)
T ss_dssp -CCBTTBSCCHHHH---HHHHHHHSTTSCBCHH-HHHHHHHHHC--------GGGTTCTTCCTTSHH---HHHHHHHHHH
T ss_pred cCCCCCCCCCHHHH---HHHHHHhCCccCcCHH-HHHHHHHHhC--------chhhcCccccCCCCc---ccchhhhccH
Confidence 33556678888875 66665 4556668888 9999998886 344322 235799 9999999999
Q ss_pred ccceeccCCCCCCCCCceeEEeCCCchh
Q psy7734 112 NRYFIKVPRSQEEPGKGSFWRIDPGSEH 139 (349)
Q Consensus 112 n~~f~kv~r~~~~~GkG~~w~l~p~~~~ 139 (349)
|+||+||++ +++|||+||+|+|+++.
T Consensus 84 n~~F~Kv~r--~~~GKG~~W~l~p~~~~ 109 (110)
T 3l2c_A 84 HSKFIKVHN--EATGKSSWWMLNPEGGK 109 (110)
T ss_dssp CTTEEEECC--CSTTCCCEEEEC-----
T ss_pred hhhheeCCC--CCCCCCceEEECccccC
Confidence 999999998 47899999999999854
No 19
>1e17_A AFX; DNA binding domain, winged helix; NMR {Homo sapiens} SCOP: a.4.5.14
Probab=99.53 E-value=2.5e-16 Score=135.14 Aligned_cols=89 Identities=29% Similarity=0.438 Sum_probs=68.0
Q ss_pred cceeeecccCceeeeecceEEEeecC-CCCCcccccCcchhhhcceEEeeecCCCceeee---cCCCceEecCcceeccc
Q psy7734 34 TAIAKLQGREFEYMVRQKRITIGRNS-SRGDVDVNMGLSSFISRRHIEIFFEHPNFFMTC---NGKNGVFVDGNSIRHNL 109 (349)
Q Consensus 34 ~a~A~l~g~~~~y~~~~~~i~iGR~s-~~~~vdi~lg~~~~ISR~Ha~i~~~~~~f~l~~---~gknG~~v~~~~irhnL 109 (349)
..+-+-..++++|... |.+++.+ +.+++++. +||+||..++ .||-.+ ....|| +|+|||||
T Consensus 33 ~~~~rn~kPp~SYa~L---I~~AI~sSp~k~LTL~-eIY~wI~~~f--------PYfr~~~d~~s~~gW---qNSIRHNL 97 (150)
T 1e17_A 33 GGSRRNAWGNQSYAEL---ISQAIESAPEKRLTLA-QIYEWMVRTV--------PYFKDKGDSNSSAGW---KNSIRHNL 97 (150)
T ss_dssp --CCCCTTCSCCHHHH---HHHHHHHSSSCCEEHH-HHHHHHHHHC--------GGGHHHHTSTTHHHH---HHHHHHHH
T ss_pred CCCCCCCCCCCCHHHH---HHHHHHhCCCCCccHH-HHHHHHHHhC--------chhccCCCCccccch---hhccceee
Confidence 3444455678888875 6667644 55678888 9999998886 333322 235799 99999999
Q ss_pred ccccceeccCCCCCCCCCceeEEeCCCchh
Q psy7734 110 SLNRYFIKVPRSQEEPGKGSFWRIDPGSEH 139 (349)
Q Consensus 110 Sln~~f~kv~r~~~~~GkG~~w~l~p~~~~ 139 (349)
|||+||+||++ +++|||+||+|+|++..
T Consensus 98 SLnk~F~Kv~r--~~~GKG~~W~ldp~~~~ 125 (150)
T 1e17_A 98 SLHSKFIKVHN--EATGKSSWWMLNPEGGK 125 (150)
T ss_dssp HSSTTEEEECC--TTTSSSCEEEECTTCC-
T ss_pred eeeeeeEecCC--CCCCCcceEEECccccc
Confidence 99999999999 67899999999999754
No 20
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens}
Probab=99.49 E-value=1.1e-15 Score=120.08 Aligned_cols=77 Identities=31% Similarity=0.486 Sum_probs=58.3
Q ss_pred ccCceeeeecceEEEee-cCCCCCcccccCcchhhhcceEEeeecCCCceeee---cCCCceEecCcceeccccccccee
Q psy7734 41 GREFEYMVRQKRITIGR-NSSRGDVDVNMGLSSFISRRHIEIFFEHPNFFMTC---NGKNGVFVDGNSIRHNLSLNRYFI 116 (349)
Q Consensus 41 g~~~~y~~~~~~i~iGR-~s~~~~vdi~lg~~~~ISR~Ha~i~~~~~~f~l~~---~gknG~~v~~~~irhnLSln~~f~ 116 (349)
.++++|... |.++. +++.+++++. +||+||..++ .||-.+ ....|| +||||||||||+||+
T Consensus 5 kp~~SY~~L---I~~Ai~~sp~~~ltL~-eIY~~i~~~f--------pyy~~~~~~~s~~gW---qNSIRHNLSln~~F~ 69 (85)
T 3bpy_A 5 WGNQSYAEL---ISQAIESAPEKRLTLA-QIYEWMVRTV--------PYFKDKGDSNSSAGW---KNSIRHNLSLHSKFI 69 (85)
T ss_dssp TBSCCHHHH---HHHHHHHSTTSCBCHH-HHHHHHHHHC--------GGGTTCTTCCTTSHH---HHHHHHHHHHCTTEE
T ss_pred cCCCCHHHH---HHHHHHhCCcCCccHH-HHHHHHHHhC--------cchhcCccCccCCCc---chhhhhhccHhhhhe
Confidence 345566553 44554 4556668888 9999998886 443322 235799 999999999999999
Q ss_pred ccCCCCCCCCCceeEEeC
Q psy7734 117 KVPRSQEEPGKGSFWRID 134 (349)
Q Consensus 117 kv~r~~~~~GkG~~w~l~ 134 (349)
||++ +++|||+||+||
T Consensus 70 Kv~r--~~~GKg~~W~ld 85 (85)
T 3bpy_A 70 KVHN--EATGKSSWWMLN 85 (85)
T ss_dssp EECC--CSTTCCCEEEEC
T ss_pred eCCC--CCCCCCCceecC
Confidence 9998 478999999986
No 21
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens}
Probab=99.42 E-value=3.2e-15 Score=127.70 Aligned_cols=94 Identities=31% Similarity=0.547 Sum_probs=66.2
Q ss_pred ecccCceeeeecceEEEeecC-CCCCcccccCcchhhhcceEEeeecCCCceeeecCCCceEecCcceecccccccceec
Q psy7734 39 LQGREFEYMVRQKRITIGRNS-SRGDVDVNMGLSSFISRRHIEIFFEHPNFFMTCNGKNGVFVDGNSIRHNLSLNRYFIK 117 (349)
Q Consensus 39 l~g~~~~y~~~~~~i~iGR~s-~~~~vdi~lg~~~~ISR~Ha~i~~~~~~f~l~~~gknG~~v~~~~irhnLSln~~f~k 117 (349)
.+.++++|... |.++..+ +.+.+++. +||+||..++ .||-. ....|| +||||||||||+||+|
T Consensus 16 ~~KPpySYa~L---I~~AI~~sp~~~LTL~-eIY~~I~~~f--------Pyyr~-~~~~gW---qNSIRHNLSln~~F~r 79 (142)
T 3g73_A 16 SERPPYSYMAM---IQFAINSTERKRMTLK-DIYTWIEDHF--------PYFKH-IAKPGW---KNSIRHNLSLHDMFVR 79 (142)
T ss_dssp TSCCSSCHHHH---HHHHHHTSTTSEECHH-HHHHHHHHHC--------THHHH-TSCTTH---HHHHHHHHHHCTTEEE
T ss_pred CCCCCCCHHHH---HHHHHHhCCCCCcCHH-HHHHHHHHhC--------CCccc-cCCCCc---cchhhhhhhhhhhhee
Confidence 45677888774 6666544 45567888 9999998886 33322 256799 9999999999999998
Q ss_pred cCCCCCCCCCceeEEeCCCchhh-hHHHHhhhhcc
Q psy7734 118 VPRSQEEPGKGSFWRIDPGSEHK-LIEQAFRRRRQ 151 (349)
Q Consensus 118 v~r~~~~~GkG~~w~l~p~~~~~-~~~~~~~~rr~ 151 (349)
+ .+++|||+||+|+|+++.. .+++.|++++.
T Consensus 80 ~---~~~~GKg~~W~i~p~~~~~l~~d~~~k~~~~ 111 (142)
T 3g73_A 80 E---TSANGKVSFWTIHPSANRYLTLDQVFKPLDP 111 (142)
T ss_dssp E---ECTTSCCEEEEECTTTCCCCCCC--------
T ss_pred c---CCCCCCCceEEECccccccchhhhhhccccC
Confidence 6 4678999999999999654 36666665443
No 22
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F
Probab=99.34 E-value=9.6e-15 Score=116.29 Aligned_cols=75 Identities=29% Similarity=0.517 Sum_probs=57.6
Q ss_pred cccCceeeeecceEEEee-cCCCCCcccccCcchhhhcceEEeeecCCCceeeecCCCceEecCcceecccccccceecc
Q psy7734 40 QGREFEYMVRQKRITIGR-NSSRGDVDVNMGLSSFISRRHIEIFFEHPNFFMTCNGKNGVFVDGNSIRHNLSLNRYFIKV 118 (349)
Q Consensus 40 ~g~~~~y~~~~~~i~iGR-~s~~~~vdi~lg~~~~ISR~Ha~i~~~~~~f~l~~~gknG~~v~~~~irhnLSln~~f~kv 118 (349)
..++++|... |.++. +++.+++++. +||+||..++ .||- ....|| +||||||||||+||+||
T Consensus 2 ~KPp~SY~~L---I~~AI~~sp~~~ltL~-eIY~~i~~~f--------pyyr--~~~~gW---kNSIRHNLSln~~F~kv 64 (93)
T 2a07_F 2 VRPPFTYATL---IRQAIMESSDRQLTLN-EIYSWFTRTF--------AYFR--RNAATW---KNAVRHNLSLHKCFVRV 64 (93)
T ss_dssp CCCSCCHHHH---HHHHHHHSTTSCBCHH-HHHHHHHHHH--------HHHC--CCHHHH---HHHHHHHHHHCTTBCCE
T ss_pred CCCCCCHHHH---HHHHHHhCCCCCccHH-HHHHHHHHhC--------Cccc--cCCCcc---ccccceeeehhhceeec
Confidence 3455666553 44454 4556778888 9999998886 3332 346799 99999999999999999
Q ss_pred CCCCCCCCCceeEEeCCC
Q psy7734 119 PRSQEEPGKGSFWRIDPG 136 (349)
Q Consensus 119 ~r~~~~~GkG~~w~l~p~ 136 (349)
++ |||+||+|||+
T Consensus 65 ~~-----gkG~~W~l~~~ 77 (93)
T 2a07_F 65 EN-----VKGAVWTVDEV 77 (93)
T ss_dssp EC-----SSSEECCBCHH
T ss_pred CC-----CCCCeeEEChH
Confidence 74 89999999975
No 23
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=98.41 E-value=3.2e-07 Score=75.16 Aligned_cols=61 Identities=16% Similarity=0.320 Sum_probs=49.4
Q ss_pred ceeeeecceEEEeecCCCCCcccccCcchhhhcceEEeeec--CCCceeeecCCCceEecCcceec
Q psy7734 44 FEYMVRQKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFE--HPNFFMTCNGKNGVFVDGNSIRH 107 (349)
Q Consensus 44 ~~y~~~~~~i~iGR~s~~~~vdi~lg~~~~ISR~Ha~i~~~--~~~f~l~~~gknG~~v~~~~irh 107 (349)
-.|.+.+..++|||... .||-|.....|||+||+|.++ .+.|+|+..+.||+||||..|..
T Consensus 17 ~~~~l~~~~~~iGR~~~---~di~l~~~~~vSr~Ha~i~~~~~~~~~~l~D~S~NGt~vng~~l~~ 79 (116)
T 1lgp_A 17 PHVLLRKREWTIGRRRG---CDLSFPSNKLVSGDHCRIVVDEKSGQVTLEDTSTSGTVINKLKVVK 79 (116)
T ss_dssp CCEEECSSEEEEESSTT---SSEECTTCTTSCTTCEEEEECTTTCCEEEEECSSSCCCCCCCCCCC
T ss_pred cEEEECCCCEEECCCCC---CCEEeCCCCCCChhHeEEEEECCCCeEEEEECCcCCcEECCEEcCC
Confidence 46778888999999864 445554456899999999997 56799999889999999987653
No 24
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=98.38 E-value=4.7e-07 Score=77.72 Aligned_cols=72 Identities=19% Similarity=0.207 Sum_probs=51.9
Q ss_pred cceeeec---ccCceeeeecceEEEeecCCCCCccccc------CcchhhhcceEEeeecCC-----CceeeecCCCceE
Q psy7734 34 TAIAKLQ---GREFEYMVRQKRITIGRNSSRGDVDVNM------GLSSFISRRHIEIFFEHP-----NFFMTCNGKNGVF 99 (349)
Q Consensus 34 ~a~A~l~---g~~~~y~~~~~~i~iGR~s~~~~vdi~l------g~~~~ISR~Ha~i~~~~~-----~f~l~~~gknG~~ 99 (349)
.++|+|. +..-.|.+.+..++|||.+. .++-|+- ..+..|||+||+|.++.. .|+|..++.||+|
T Consensus 28 ~~w~~L~~~~~~~~~i~L~~~~~~IGR~~~-~di~l~d~~~~~~~~~~~VSr~Ha~I~~~~~~~~~~~~~i~D~StNGT~ 106 (149)
T 1gxc_A 28 APWARLWALQDGFANLECVNDNYWFGRDKS-CEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSGNGTF 106 (149)
T ss_dssp -CCEEEEECSTTCCCEEECSSEEEEESSTT-CSEECCCGGGGGSSGGGGSCTTCEEEEEEECTTSSEEEEEEECCSSCEE
T ss_pred CeeEEEEEcCCCCceEEECCCCEEecCCCC-CCEEECCccccccccCCcCchhheEEEEECCCCceeEEEEEECCCCCeE
Confidence 4555654 33345778888999999863 3332221 113379999999999876 7999999999999
Q ss_pred ecCccee
Q psy7734 100 VDGNSIR 106 (349)
Q Consensus 100 v~~~~ir 106 (349)
|||..|.
T Consensus 107 VNg~~i~ 113 (149)
T 1gxc_A 107 VNTELVG 113 (149)
T ss_dssp ETTEECC
T ss_pred ECCEECC
Confidence 9998764
No 25
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=98.23 E-value=1.7e-06 Score=72.07 Aligned_cols=53 Identities=26% Similarity=0.520 Sum_probs=43.2
Q ss_pred eEEEeecCCCCCcccccCcchhhhcceEEeeec-CCCceeeecCCCceEecCcceec
Q psy7734 52 RITIGRNSSRGDVDVNMGLSSFISRRHIEIFFE-HPNFFMTCNGKNGVFVDGNSIRH 107 (349)
Q Consensus 52 ~i~iGR~s~~~~vdi~lg~~~~ISR~Ha~i~~~-~~~f~l~~~gknG~~v~~~~irh 107 (349)
.++|||... .||.|.....|||+||+|.++ .+.|+++.+++||+||||..|..
T Consensus 37 ~~~IGR~~~---~di~l~~~~~vSr~Ha~i~~~~~g~~~l~DlS~NGT~vNg~~l~~ 90 (127)
T 1g6g_A 37 VWTFGRNPA---CDYHLGNISRLSNKHFQILLGEDGNLLLNDISTNGTWLNGQKVEK 90 (127)
T ss_dssp EEEEESSTT---SSEECCSCTTSCSSCEEEEECTTSCEEEEECCSSCCEETTEECCT
T ss_pred CEEECCCCC---CCEEeCCCCCCChhHeEEEECCCCcEEEEECCcCCeEECCEEcCC
Confidence 899999865 345544444699999999995 67899999999999999987654
No 26
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=98.19 E-value=2.7e-06 Score=70.92 Aligned_cols=59 Identities=17% Similarity=0.262 Sum_probs=48.2
Q ss_pred ceeeeecceEEEeecCCCCCcccccCcchhhhcceEEeeecCCCceeeec-CCCceEecCccee
Q psy7734 44 FEYMVRQKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEHPNFFMTCN-GKNGVFVDGNSIR 106 (349)
Q Consensus 44 ~~y~~~~~~i~iGR~s~~~~vdi~lg~~~~ISR~Ha~i~~~~~~f~l~~~-gknG~~v~~~~ir 106 (349)
-.|.+....++|||... .++.++ ...|||+||+|.++.+.|+|+.+ ++||+||||..|.
T Consensus 26 ~~~~l~~~~~~IGR~~~-~di~l~---d~~VSr~Ha~i~~~~~~~~l~Dl~S~nGt~vNg~~i~ 85 (128)
T 1r21_A 26 PHFPLSLSTCLFGRGIE-CDIRIQ---LPVVSKQHCKIEIHEQEAILHNFSSTNPTQVNGSVID 85 (128)
T ss_dssp EEEECCSSEEEEESSTT-SSEECC---CTTSCTTCEEEEECSSCEEECCCCSSSCCEETTEECS
T ss_pred eEEEECCCCEEECCCCC-CCEEEC---CCCCChhHEEEEEECCEEEEEECCCCCCEEECCEECC
Confidence 45778788999999765 333333 34899999999999999999999 5899999998875
No 27
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=98.16 E-value=2.8e-06 Score=67.71 Aligned_cols=64 Identities=23% Similarity=0.374 Sum_probs=51.0
Q ss_pred ecccCceeeeecceEEEeecCCCCCcccccCcchhhhcceEEeeecCCCceeeec-CCCceEecCccee
Q psy7734 39 LQGREFEYMVRQKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEHPNFFMTCN-GKNGVFVDGNSIR 106 (349)
Q Consensus 39 l~g~~~~y~~~~~~i~iGR~s~~~~vdi~lg~~~~ISR~Ha~i~~~~~~f~l~~~-gknG~~v~~~~ir 106 (349)
..|..-.|.+....++|||... .++.++ ...|||+||+|.++.+.|+++.+ ++||+||||..+.
T Consensus 11 ~~g~g~~~~l~~~~~~IGR~~~-~di~l~---d~~vSr~Ha~i~~~~~~~~l~Dl~S~nGt~vng~~i~ 75 (100)
T 3po8_A 11 DDGSGRTYQLREGSNIIGRGQD-AQFRLP---DTGVSRRHLEIRWDGQVALLADLNSTNGTTVNNAPVQ 75 (100)
T ss_dssp CSSSCCEEECCSEEEEEESSTT-CSEECC---CTTSCSSCEEEEECSSCEEEEECSCSSCCEETTEECS
T ss_pred ECCCCcEEEECCCCEEEeCCCC-CCEECC---CCCcChhhCEEEEeCCEEEEEECCCCCCEEECCEECc
Confidence 3455677888888999999754 333333 45899999999999989999999 6899999998763
No 28
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=98.14 E-value=2e-06 Score=70.59 Aligned_cols=60 Identities=18% Similarity=0.323 Sum_probs=47.8
Q ss_pred ceeeeec-ceEEEeecCCCCCcccccCcchhhhcceEEeeecCCCceeeec-CCCceEecCccee
Q psy7734 44 FEYMVRQ-KRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEHPNFFMTCN-GKNGVFVDGNSIR 106 (349)
Q Consensus 44 ~~y~~~~-~~i~iGR~s~~~~vdi~lg~~~~ISR~Ha~i~~~~~~f~l~~~-gknG~~v~~~~ir 106 (349)
-.|.+.. ..++|||.....++.++ ...|||+||+|.++...|+++.+ ++||+||||..|.
T Consensus 25 ~~~~l~~~~~~~iGR~~~~~di~l~---d~~vSr~Ha~i~~~~~~~~l~Dl~S~nGT~vng~~l~ 86 (118)
T 1uht_A 25 DALDYKPGSTIRVGRIVRGNEIAIK---DAGISTKHLRIESDSGNWVIQDLGSSNGTLLNSNALD 86 (118)
T ss_dssp CBCCBCTTCCEEEESSSTTCSEECC---SSSSCTTCEEEEECSSSEEEECCCCSSCCEESSSBCC
T ss_pred cEEEECCCCEEEEcCCCCCCCEEeC---CCCCchHHeEEEEECCEEEEEECCCCCCeEECCEECC
Confidence 3555654 57999998555555554 47899999999999999999999 6999999998764
No 29
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=98.12 E-value=3.4e-06 Score=67.99 Aligned_cols=61 Identities=28% Similarity=0.481 Sum_probs=46.9
Q ss_pred ceeeeec-ceEEEeecCCCCCcccccCcchhhhcceEEeeec-CCCceeeec-CCCceEecCcceec
Q psy7734 44 FEYMVRQ-KRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFE-HPNFFMTCN-GKNGVFVDGNSIRH 107 (349)
Q Consensus 44 ~~y~~~~-~~i~iGR~s~~~~vdi~lg~~~~ISR~Ha~i~~~-~~~f~l~~~-gknG~~v~~~~irh 107 (349)
-+|.+.. ..++|||.....++.++ ...|||+||+|.++ .+.|++..+ ++||+||||..|..
T Consensus 17 ~~~~l~~~~~~~iGR~~~~~di~l~---d~~vSr~Ha~i~~~~~~~~~l~Dl~S~nGt~vng~~i~~ 80 (106)
T 3gqs_A 17 AEFHLDSGKTYIVGSDPQVADIVLS---DMSISRQHAKIIIGNDNSVLIEDLGSKNGVIVEGRKIEH 80 (106)
T ss_dssp CEEEECTTCEEEEESCTTTCSEECC---CTTSCSSCEEEEECTTSCEEEEECSCSSCCEETTEECSS
T ss_pred EEEEECCCCEEEEeECCCcCCEEeC---CCCcchhhcEEEECCCCcEEEEECcCCCCeEECCEECCC
Confidence 4566665 46899998644444443 36899999999998 577999998 78999999987753
No 30
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=98.11 E-value=4.2e-06 Score=70.78 Aligned_cols=63 Identities=17% Similarity=0.184 Sum_probs=46.1
Q ss_pred ceeeee-cceEEEeecCCCCCccccc-CcchhhhcceEEeeec-CCCceeeec-CCCceEecCcceec
Q psy7734 44 FEYMVR-QKRITIGRNSSRGDVDVNM-GLSSFISRRHIEIFFE-HPNFFMTCN-GKNGVFVDGNSIRH 107 (349)
Q Consensus 44 ~~y~~~-~~~i~iGR~s~~~~vdi~l-g~~~~ISR~Ha~i~~~-~~~f~l~~~-gknG~~v~~~~irh 107 (349)
-.|.+. +..++|||... .++.++- .....|||+||+|.++ .+.|+|..+ +.||+||||..|..
T Consensus 20 ~~~~l~~~~~~~IGR~~~-~di~l~~~~~~~~VSr~Ha~i~~~~~g~~~l~Dl~S~NGT~vNg~~l~~ 86 (138)
T 2pie_A 20 GWLLLEDGCEVTVGRGFG-VTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKSLNGVWLNRARLEP 86 (138)
T ss_dssp CBEEECTTCCEEEESSSS-SSEECCCSSCTTSSCSSCEEEEECTTSCEEEEECSCSSCEEETTEECCT
T ss_pred CEEEecCCCeEEECCCCC-CCEEeCCCCcCCCCChhHeEEEEcCCCcEEEEECCCCCCeEECCEEcCC
Confidence 356665 67899999864 2333331 1234699999999994 667999998 79999999977643
No 31
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=98.05 E-value=4.7e-06 Score=69.98 Aligned_cols=68 Identities=22% Similarity=0.401 Sum_probs=50.0
Q ss_pred ceeeeccc--CceeeeecceEEEeecCCCCCcccccCcchhhhcceEEeeecC---C--Cceeeec------CCCceEec
Q psy7734 35 AIAKLQGR--EFEYMVRQKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEH---P--NFFMTCN------GKNGVFVD 101 (349)
Q Consensus 35 a~A~l~g~--~~~y~~~~~~i~iGR~s~~~~vdi~lg~~~~ISR~Ha~i~~~~---~--~f~l~~~------gknG~~v~ 101 (349)
++-.+.+. ...|.+.+..++|||... . ||-|. ...|||+||+|.++. + .|+|..+ ++||+|||
T Consensus 12 ~~lvv~~~~~~~~~~l~~~~~~IGR~~~-~--di~l~-d~~VSr~Ha~I~~~~~~~g~~~~~l~Dl~~~~~~S~NGT~vN 87 (131)
T 3hx1_A 12 HILIILDDAGRREVLLTETFYTIGRSPR-A--DIRIK-SQFVSRIHAVLVRKSSDDVQAAYRIIDGDEDGQSSVNGLMIN 87 (131)
T ss_dssp EEEEEEETTEEEEEEECSSEEEEESSTT-S--SEECC-CSSSCTTCEEEEEC------CCEEEEESCTTSCCCSSCEEET
T ss_pred eEEEEECCCCcEEEEECCCCEEECCCCC-C--CEEEC-CCCcChhheEEEEEccCCCceEEEEEECCCCCCCCCCceEEC
Confidence 34444443 357888888999999865 3 33332 357999999999873 2 4999998 89999999
Q ss_pred Cccee
Q psy7734 102 GNSIR 106 (349)
Q Consensus 102 ~~~ir 106 (349)
|..|.
T Consensus 88 g~~i~ 92 (131)
T 3hx1_A 88 GKKVQ 92 (131)
T ss_dssp TEEES
T ss_pred CEEeE
Confidence 98874
No 32
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=98.05 E-value=4e-06 Score=73.04 Aligned_cols=54 Identities=28% Similarity=0.530 Sum_probs=44.3
Q ss_pred ceEEEeecCCCCCcccccCcchhhhcceEEeeec-CCCceeeecCCCceEecCcceec
Q psy7734 51 KRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFE-HPNFFMTCNGKNGVFVDGNSIRH 107 (349)
Q Consensus 51 ~~i~iGR~s~~~~vdi~lg~~~~ISR~Ha~i~~~-~~~f~l~~~gknG~~v~~~~irh 107 (349)
..++|||... .||.|...+.|||+||+|.++ .+.|+|..++.||+||||..|..
T Consensus 64 ~~~~IGR~~~---~di~l~d~~~vSr~Ha~I~~~~~g~~~l~DlS~NGT~vNg~~i~~ 118 (164)
T 1g3g_A 64 KVWTFGRNPA---CDYHLGNISRLSNKHFQILLGEDGNLLLNDISTNGTWLNGQKVEK 118 (164)
T ss_dssp EEEEEESSSS---SSEECCCCTTTTSSCEEEEECSTTCEEEEECCSSCEEETTEEECT
T ss_pred CcEEECCCCC---CCEEeCCcCCcChhHEEEEECCCCCEEEEECCCCCeEECCEEcCC
Confidence 3789999765 455555555799999999995 67899999999999999988764
No 33
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=98.04 E-value=5.2e-06 Score=72.00 Aligned_cols=64 Identities=23% Similarity=0.374 Sum_probs=51.5
Q ss_pred ecccCceeeeecceEEEeecCCCCCcccccCcchhhhcceEEeeecCCCceeeec-CCCceEecCccee
Q psy7734 39 LQGREFEYMVRQKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEHPNFFMTCN-GKNGVFVDGNSIR 106 (349)
Q Consensus 39 l~g~~~~y~~~~~~i~iGR~s~~~~vdi~lg~~~~ISR~Ha~i~~~~~~f~l~~~-gknG~~v~~~~ir 106 (349)
..|..-.|.+....++|||... .++.|+ ...|||+||+|.++...|+|+.+ ++||+|||+..|.
T Consensus 73 ~~g~g~~~~L~~~~~~IGR~~~-~dI~L~---d~~VSr~HA~I~~~~~~~~l~DlgStNGT~VNG~~i~ 137 (157)
T 3oun_A 73 DDGSGRTYQLREGSNIIGRGQD-AQFRLP---DTGVSRRHLEIRWDGQVALLADLNSTNGTTVNNAPVQ 137 (157)
T ss_dssp TTTTCCEEECCSEEEEEESSTT-CSEECC---CTTSCTTCEEEEECSSCEEEEECSCSSCCEETTEECS
T ss_pred cCCCCeEEEECCCcEEEEeCCC-CCEEeC---CCCcChhHEEEEEECCEEEEEECCCCCCeEECCEECc
Confidence 3456678888888999999754 333333 45899999999999889999999 7899999998764
No 34
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=98.02 E-value=5.8e-06 Score=67.65 Aligned_cols=59 Identities=24% Similarity=0.426 Sum_probs=48.4
Q ss_pred ceeeeecceEEEeecCCCCCcccccCcchhhhcceEEeeecCCCceeeec-CCCceEecCccee
Q psy7734 44 FEYMVRQKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEHPNFFMTCN-GKNGVFVDGNSIR 106 (349)
Q Consensus 44 ~~y~~~~~~i~iGR~s~~~~vdi~lg~~~~ISR~Ha~i~~~~~~f~l~~~-gknG~~v~~~~ir 106 (349)
..|.+.+..++|||... .++.++ ...|||+||+|.++...|+++.+ ++||+||||..|.
T Consensus 24 ~~~~l~~~~~~IGR~~~-~di~l~---d~~vSr~Ha~i~~~~~~~~l~Dl~S~nGt~vng~~i~ 83 (115)
T 2xt9_B 24 SRFLLDQPTTSAGRHPD-SDIFLD---DVTVSRRHAEFRLEGGEFQVVDVGSLNGTYVNREPVD 83 (115)
T ss_dssp CEEEECSSEEEEESSTT-SSEECC---STTSCSSCEEEEEETTEEEEEECSCSSCEEETTEECS
T ss_pred eEEEECCCCEEECCCCC-CCEEeC---CcccChhheEEEEECCEEEEEECCCCCCeEECCEEcc
Confidence 56888888999999864 333333 36899999999999889999999 6999999998764
No 35
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=98.00 E-value=2.7e-06 Score=72.05 Aligned_cols=67 Identities=18% Similarity=0.347 Sum_probs=50.7
Q ss_pred eeecccC--ceeeeecc-eEEEeecCCCCCcccccCcchhhhcceEEeeecC--CCceeeec-CCCceEecCccee
Q psy7734 37 AKLQGRE--FEYMVRQK-RITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEH--PNFFMTCN-GKNGVFVDGNSIR 106 (349)
Q Consensus 37 A~l~g~~--~~y~~~~~-~i~iGR~s~~~~vdi~lg~~~~ISR~Ha~i~~~~--~~f~l~~~-gknG~~v~~~~ir 106 (349)
..+.|.. -.|.+... .++|||.....++.|+ ...|||+||+|.++. +.|+|+.+ ++||+||||..|.
T Consensus 38 ~v~~g~~~g~~~~l~~~~~~~IGR~~~~~di~l~---d~~VSr~Ha~i~~~~~~~~~~l~Dl~S~NGT~vNg~~l~ 110 (140)
T 2jpe_A 38 DVVKGDKLIEKLIIDEKKYYLFGRNPDLCDFTID---HQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRLE 110 (140)
T ss_dssp EEESSSSEEEEECCSSCSBCCBSSCTTTSSSCCC---CSSSCTTSBEEEEBSSSCCEEEECCSCSSCEESSSCEEC
T ss_pred EEEcCCCcceEEEeCCCCeEEecCCCccCCEEeC---CCCcChhheEEEEECCCCcEEEEECCCCCCeEECCEECC
Confidence 3455554 35667664 4999998663444444 457999999999997 78999997 8999999998865
No 36
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=97.99 E-value=7.3e-06 Score=69.88 Aligned_cols=58 Identities=19% Similarity=0.224 Sum_probs=43.1
Q ss_pred ecceEEEeecCCCCCccccc-CcchhhhcceEEeeec-CCCceeeec-CCCceEecCcceec
Q psy7734 49 RQKRITIGRNSSRGDVDVNM-GLSSFISRRHIEIFFE-HPNFFMTCN-GKNGVFVDGNSIRH 107 (349)
Q Consensus 49 ~~~~i~iGR~s~~~~vdi~l-g~~~~ISR~Ha~i~~~-~~~f~l~~~-gknG~~v~~~~irh 107 (349)
.+..++|||... .++.++- ..+..|||+||+|.++ .+.|+|..+ +.||+||||..|..
T Consensus 34 ~~~~~~IGR~~~-~di~l~~~~~~~~VSr~Ha~i~~~~~g~~~l~Dl~S~NGT~vNg~~i~~ 94 (145)
T 2csw_A 34 DGCEVTVGRGFG-VTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKSLNGVWLNRARLEP 94 (145)
T ss_dssp TTCCEEEESSTT-SSEECCCSSCGGGSCTTCEEEEECTTSCEEEEBSSCSSCEEESSCBCCB
T ss_pred CCCcEEECCCCC-CCEEECCCCcCCCCChhHeEEEEcCCCeEEEEECCCCCCeEECCEECCC
Confidence 566899999864 3333331 1234599999999995 667999996 88999999988654
No 37
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=97.98 E-value=9e-06 Score=69.73 Aligned_cols=60 Identities=27% Similarity=0.380 Sum_probs=46.5
Q ss_pred ceeeee-cceEEEeecCCCCCcccccCcchhhhcceEEeee--------cCCCceeeecCCCceEecCcceec
Q psy7734 44 FEYMVR-QKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFF--------EHPNFFMTCNGKNGVFVDGNSIRH 107 (349)
Q Consensus 44 ~~y~~~-~~~i~iGR~s~~~~vdi~lg~~~~ISR~Ha~i~~--------~~~~f~l~~~gknG~~v~~~~irh 107 (349)
..|.+. +..++|||... . ||.|. ...|||+||+|.+ ..+.|+|..+++||+||||..|..
T Consensus 30 ~~~~l~~~~~~~IGR~~~-~--di~l~-d~~VSr~Ha~I~~~~~~~~~~~~~~~~l~DlS~NGT~VNg~~i~~ 98 (151)
T 2jqj_A 30 QKVEITNRNVTTIGRSRS-C--DVILS-EPDISTFHAEFHLLQMDVDNFQRNLINVIDKSRNGTFINGNRLVK 98 (151)
T ss_dssp EEEEEECCSCEEEESSTT-S--SEECC-CTTCCTTSEEEEEEEEEETTEEEEEEEEEECCSSCEEETTEECCS
T ss_pred eEEEEcCCCeEEeCCCCC-C--CEEEC-CCCCccccCEEEEecccCCcCcCCEEEEEECCCCCeEECCEEcCC
Confidence 456665 47899999864 3 34333 3679999999999 556799999999999999988744
No 38
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=97.98 E-value=6.3e-06 Score=70.35 Aligned_cols=60 Identities=23% Similarity=0.377 Sum_probs=49.1
Q ss_pred CceeeeecceEEEeecCCCCCcccccCcchhhhcceEEeeecCCCceeeec-CCCceEecCccee
Q psy7734 43 EFEYMVRQKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEHPNFFMTCN-GKNGVFVDGNSIR 106 (349)
Q Consensus 43 ~~~y~~~~~~i~iGR~s~~~~vdi~lg~~~~ISR~Ha~i~~~~~~f~l~~~-gknG~~v~~~~ir 106 (349)
...|.+.+..++|||... .++.++ ...|||+||+|.++.+.|+|..+ ++||+||||..|.
T Consensus 58 g~~~~L~~~~~~IGR~~~-~di~l~---d~~VSr~Ha~I~~~~~~~~l~DlgS~NGT~VNg~~i~ 118 (143)
T 2kb3_A 58 GARFLLDQPTTTAGRHPE-SDIFLD---DVTVSRRHAEFRINEGEFEVVDVGSLNGTYVNREPRN 118 (143)
T ss_dssp TCEEEECSSEEEESSCTT-CSBCCC---CSSCCSSSEEEEEETTEEEEEESCCSSCCEETTEECS
T ss_pred CeEEEeCCCCeeccCCCC-CCEEeC---CCCcChhhEEEEEECCEEEEEECCCcCCeEECCEEcc
Confidence 367888888999999865 333333 36899999999999889999999 6899999998764
No 39
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=97.96 E-value=7.8e-06 Score=67.41 Aligned_cols=60 Identities=15% Similarity=0.184 Sum_probs=48.2
Q ss_pred ceeeeecceEEEeec-CCCCCcccccCcchhhhcceEEeeecCCCceeeecC-CCceEecCccee
Q psy7734 44 FEYMVRQKRITIGRN-SSRGDVDVNMGLSSFISRRHIEIFFEHPNFFMTCNG-KNGVFVDGNSIR 106 (349)
Q Consensus 44 ~~y~~~~~~i~iGR~-s~~~~vdi~lg~~~~ISR~Ha~i~~~~~~f~l~~~g-knG~~v~~~~ir 106 (349)
..|.+....++|||. +...++.++ ...|||+||+|.++.+.|+++.++ .||+||||..|.
T Consensus 29 ~~~~L~~~~~~IGr~r~~~~di~l~---~~~vSr~Ha~i~~~~~~~~l~dl~S~ngt~vNg~~i~ 90 (120)
T 1wln_A 29 KLYRLQLSVTEVGTEKFDDNSIQLF---GPGIQPHHCDLTNMDGVVTVTPRSMDAETYVDGQRIS 90 (120)
T ss_dssp CEEECCSEEEECSSSCCSTTCCCCC---CTTCCSSCEEEEESSSCEEEEESCSSSCEEETSCBCS
T ss_pred EEEEECCCCEEECCCCCCCCcEEEC---CCCCchhheEEEEcCCEEEEEECCCCCCEEECCEEcC
Confidence 457788888999984 444444444 457999999999998899999995 899999998875
No 40
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=97.94 E-value=7.2e-06 Score=71.47 Aligned_cols=59 Identities=24% Similarity=0.431 Sum_probs=48.8
Q ss_pred ceeeeecceEEEeecCCCCCcccccCcchhhhcceEEeeecCCCceeeec-CCCceEecCccee
Q psy7734 44 FEYMVRQKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEHPNFFMTCN-GKNGVFVDGNSIR 106 (349)
Q Consensus 44 ~~y~~~~~~i~iGR~s~~~~vdi~lg~~~~ISR~Ha~i~~~~~~f~l~~~-gknG~~v~~~~ir 106 (349)
..|.+.+..++|||... .++.|+ ...|||+||+|.++.+.|+|+.+ +.||+||||..|.
T Consensus 68 ~~~~L~~~~~~IGR~~~-~di~l~---d~~VSr~HA~I~~~~~~~~l~DlgS~NGT~VNg~~i~ 127 (162)
T 2kfu_A 68 SRFLLDQAITSAGRHPD-SDIFLD---DVTVSRRHAEFRLENNEFNVVDVGSLNGTYVNREPVD 127 (162)
T ss_dssp CEEETTSSEEEEESCSS-SSEEST---TTSSSSCSEEEEEETTEEEEECCCCSSCEEETTBCCS
T ss_pred eEEEECCCCEEECCCCC-CCEEEC---CCCcChhhEEEEEECCEEEEEECCCCCCeEECCEEcc
Confidence 67888889999999864 333333 36899999999999999999999 6899999998764
No 41
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=97.91 E-value=2.1e-05 Score=66.16 Aligned_cols=58 Identities=16% Similarity=0.149 Sum_probs=46.5
Q ss_pred ceeeeecceEEEeecCCCCCcccccCcchhhhcceEEeeec--CCCceeeec-CCCceEecCcce
Q psy7734 44 FEYMVRQKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFE--HPNFFMTCN-GKNGVFVDGNSI 105 (349)
Q Consensus 44 ~~y~~~~~~i~iGR~s~~~~vdi~lg~~~~ISR~Ha~i~~~--~~~f~l~~~-gknG~~v~~~~i 105 (349)
-+|.+....++|||... .++.++ ...|||+||+|.++ .+.|+++.+ +.||+||||..|
T Consensus 38 ~~~~L~~~~~~IGR~~~-~di~l~---d~~VSr~HA~i~~~~~~~~~~l~Dl~S~NGT~vNg~~i 98 (132)
T 3va4_A 38 RDFPLYLGKNVVGRSPD-CSVALP---FPSISKQHAVIEISAWNKAPILQDCGSLNGTQIVKPPR 98 (132)
T ss_dssp EEEEECSEEEEEESSTT-SSEECC---CTTSCTTCEEEEECSTTSCCEEEECSCSSCEEETTTTE
T ss_pred eEEEECCCCEEEccCCC-CCEEeC---CCCcChhHEEEEEEcCCCEEEEEECCCCCCeEECCEEc
Confidence 67888888999999865 333333 35899999999997 367999998 789999999874
No 42
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=97.86 E-value=1.5e-05 Score=67.41 Aligned_cols=58 Identities=24% Similarity=0.388 Sum_probs=44.5
Q ss_pred eeeeec-----ceEEEeecCCCCCcccccCcchhhhcceEEeeecCC--Cceeeec-CCCceEecCccee
Q psy7734 45 EYMVRQ-----KRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEHP--NFFMTCN-GKNGVFVDGNSIR 106 (349)
Q Consensus 45 ~y~~~~-----~~i~iGR~s~~~~vdi~lg~~~~ISR~Ha~i~~~~~--~f~l~~~-gknG~~v~~~~ir 106 (349)
.|.+.. ..++|||... .++.++ ...|||+||+|.++.. .|+|+.+ ++||+||||..|.
T Consensus 21 ~~~l~~~~~~~~~~~IGR~~~-~di~l~---d~~VSr~Ha~i~~~~~~~~~~l~DlgS~NGT~vNg~~i~ 86 (139)
T 1mzk_A 21 QHAVNSTSSSKLPVKLGRVSP-SDLALK---DSEVSGKHAQITWNSTKFKWELVDMGSLNGTLVNSHSIS 86 (139)
T ss_dssp EEEECTTCSTTCSEEEESSSS-CSEECC---CTTSSSEEEEEEEETTTTEEEEEETTCSSCCEETTEESS
T ss_pred EEEecCCCCccceEEeeCCCC-CCEEeC---CCCCChHHcEEEEECCCCEEEEEECCCCCCEEECCEECc
Confidence 455554 3799999866 333333 4579999999999874 5999999 6999999998764
No 43
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=97.81 E-value=1.1e-05 Score=69.82 Aligned_cols=59 Identities=20% Similarity=0.325 Sum_probs=44.2
Q ss_pred ceeeeecce--EEEeecCCCCCcccccCcchhhhcceEEeeecC---------------CCceeeecCCCceEecCccee
Q psy7734 44 FEYMVRQKR--ITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEH---------------PNFFMTCNGKNGVFVDGNSIR 106 (349)
Q Consensus 44 ~~y~~~~~~--i~iGR~s~~~~vdi~lg~~~~ISR~Ha~i~~~~---------------~~f~l~~~gknG~~v~~~~ir 106 (349)
..|.+.... ++|||... . ||-|. ...|||+||+|.++. ..|++..++.||+||||..|.
T Consensus 18 ~~i~L~~~~~~~~IGR~~~-~--di~l~-d~~VSr~Ha~I~~~~~~~g~~~~~~~~~~~~~~~l~DlStNGT~VNg~ri~ 93 (158)
T 1dmz_A 18 ESLEIQQGVNPFFIGRSED-C--NCKIE-DNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHTGTNVSYLNNNRMI 93 (158)
T ss_dssp CCEEETTSCSCEEEESSTT-S--SEECC-CTTSCSSSEEEEEEECCCCCCCSSCSCSSCEEEEEEECSTTCCEETTEECC
T ss_pred eEEEEcCCCceEEECCCCC-C--CEEeC-CCCcChHHeEEEEecCccccccccccccccccEEEEECCcCCeEECCEEcC
Confidence 345555544 99999754 3 33332 248999999999875 568999999999999998764
No 44
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=97.80 E-value=1.7e-05 Score=68.79 Aligned_cols=62 Identities=18% Similarity=0.245 Sum_probs=45.7
Q ss_pred eeeee-cceEEEeecCCC------------CCcccccCcchhhhcceEEeeecCCC----ceeeec-CCCceEecCccee
Q psy7734 45 EYMVR-QKRITIGRNSSR------------GDVDVNMGLSSFISRRHIEIFFEHPN----FFMTCN-GKNGVFVDGNSIR 106 (349)
Q Consensus 45 ~y~~~-~~~i~iGR~s~~------------~~vdi~lg~~~~ISR~Ha~i~~~~~~----f~l~~~-gknG~~v~~~~ir 106 (349)
+|.+. +..++|||.+.. ...||.|.. ..|||+||.|.++... |+|..+ +.||.||||..|.
T Consensus 49 ~~~L~~~~~~~IGR~~~~~~~~~~~~~n~~~~~Di~l~~-~~VSr~HA~I~~~~~~~~~~~~l~Dl~StNGT~VNg~ri~ 127 (158)
T 3els_A 49 RYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPE-ETSSKQHCVIQFRNVRGILKCYVMDLDSSNGTCLNNVVIP 127 (158)
T ss_dssp EEECSSCSEEEEEECCCC---------CCCCCCSEEECC-TTSCSSCEEEEEEEETTEEEEEEEECSCSSCCEETTEECC
T ss_pred EEEecCCCceEeccccccccccccccccccccCCEEcCC-CCCCcccEEEEEEccCCeeEEEEEeCCCCCccEECCEEcC
Confidence 34443 456899998631 224555543 4899999999998765 999998 8899999998765
Q ss_pred c
Q psy7734 107 H 107 (349)
Q Consensus 107 h 107 (349)
.
T Consensus 128 ~ 128 (158)
T 3els_A 128 G 128 (158)
T ss_dssp T
T ss_pred C
Confidence 4
No 45
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=97.78 E-value=2.3e-05 Score=65.71 Aligned_cols=59 Identities=22% Similarity=0.344 Sum_probs=41.9
Q ss_pred eeeee-cceEEEeecCCCCCcccccCcchhhhcceEEeeec-----------CCCceeeec-CCCceEecCcceec
Q psy7734 45 EYMVR-QKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFE-----------HPNFFMTCN-GKNGVFVDGNSIRH 107 (349)
Q Consensus 45 ~y~~~-~~~i~iGR~s~~~~vdi~lg~~~~ISR~Ha~i~~~-----------~~~f~l~~~-gknG~~v~~~~irh 107 (349)
++.+. +..++|||... .||-|. ...|||+||.|.|. ...|+|..+ ++||.||||..|..
T Consensus 34 ~~~L~~~~~~~IGR~~~---~di~l~-~~~VSr~HA~I~~r~~~~~~~~~~~~~~~~l~Dl~StNGT~vNg~ri~~ 105 (130)
T 4h87_A 34 TRSLKGTSYCLFGRLSG---CDVCLE-HPSVSRYHAVLQHRASGPDGECDSNGPGFYLYDLGSTHGTFLNKTRIPP 105 (130)
T ss_dssp EEECTTCSEEEEESSTT---SSEECC-CTTSCSSCEEEEEBCCCCCC------CCEEEEECSCSSCEEETTEECCT
T ss_pred eEEeCCCceEEEcCCcC---CCEEeC-CCCcchhcEEEEEecccCccceeccCCcceEeeCCCCCceEECCEECCC
Confidence 34443 34579999754 344443 34699999999873 246899997 78999999988743
No 46
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=97.76 E-value=1.6e-05 Score=70.56 Aligned_cols=59 Identities=20% Similarity=0.336 Sum_probs=45.2
Q ss_pred ceeeeecce--EEEeecCCCCCcccccCcchhhhcceEEeeecC---------------CCceeeecCCCceEecCccee
Q psy7734 44 FEYMVRQKR--ITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEH---------------PNFFMTCNGKNGVFVDGNSIR 106 (349)
Q Consensus 44 ~~y~~~~~~--i~iGR~s~~~~vdi~lg~~~~ISR~Ha~i~~~~---------------~~f~l~~~gknG~~v~~~~ir 106 (349)
..|.+.... ++|||... .++-|+ ...|||+||+|.++. ..|+|..++.||+||||..|.
T Consensus 42 ~~i~L~~~~~~~~IGR~~~-~di~l~---d~~VSr~HA~I~~~~~~~g~~~~e~~~~~~~~~~l~DlStNGT~VNg~ri~ 117 (182)
T 1qu5_A 42 ESLEIQQGVNPFFIGRSED-CNCKIE---DNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHTGTNVSYLNNNRMI 117 (182)
T ss_dssp SCCCBTTCCSSEEESSSTT-SSSCCC---CTTSCSSCEEEEEECCCCCSSCCSSCCCSCCEEEECCCSSSCCEETTEECC
T ss_pred eEEEEcCCCceEEECCCCC-CCEEEC---CCCcChHHeEEEEecCccccccccccccccceEEEEECCcCCeEECCEEcC
Confidence 456666555 99999864 333333 248999999999876 679999999999999998764
No 47
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=97.67 E-value=3.7e-05 Score=75.34 Aligned_cols=60 Identities=27% Similarity=0.354 Sum_probs=50.0
Q ss_pred cCceeeeecceEEEeecCCCCCcccccCcchhhhcceEEeeecCCCceeeec-CCCceEecCcce
Q psy7734 42 REFEYMVRQKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEHPNFFMTCN-GKNGVFVDGNSI 105 (349)
Q Consensus 42 ~~~~y~~~~~~i~iGR~s~~~~vdi~lg~~~~ISR~Ha~i~~~~~~f~l~~~-gknG~~v~~~~i 105 (349)
....|.+.+..++|||.++ .++.++ ...|||+||+|.++.+.|++..+ ++||+||||..|
T Consensus 297 ~g~~~~l~~~~~~iGR~~~-~di~l~---~~~vSr~Ha~i~~~~~~~~l~Dl~S~nGt~vng~~i 357 (388)
T 2ff4_A 297 SGRGYPLQAAATRIGRLHD-NDIVLD---SANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERI 357 (388)
T ss_dssp TCCEEECCSSEEEEESSTT-SSEECC---CTTSCTTCEEEEECSSCEEEEECSCSSCCEETTEEC
T ss_pred CCcEEEECCCCEEEecCCC-CeEEEC---CCccChhHeEEEEECCEEEEEECCCCCCeEECCEEC
Confidence 4467888888999999865 444444 47899999999999999999997 689999999887
No 48
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=97.64 E-value=5e-05 Score=63.24 Aligned_cols=58 Identities=24% Similarity=0.395 Sum_probs=45.2
Q ss_pred ceeeeecceEEEeecCCCCCcccccCcchhhhcceEEeeec-CCCceeeecCCCceEecCccee
Q psy7734 44 FEYMVRQKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFE-HPNFFMTCNGKNGVFVDGNSIR 106 (349)
Q Consensus 44 ~~y~~~~~~i~iGR~s~~~~vdi~lg~~~~ISR~Ha~i~~~-~~~f~l~~~gknG~~v~~~~ir 106 (349)
.-|+++. ..+|||.++. ++-|+ | ..|||+||.|.++ .+.++|+.++.||+||||..|.
T Consensus 42 l~y~L~~-~t~IGR~~~~-DI~L~-~--~~Vs~~Ha~I~~~~~g~~~l~dl~~ngt~VNG~~V~ 100 (124)
T 3fm8_A 42 LVYYLKE-HTLIGSANSQ-DIQLC-G--MGILPEHCIIDITSEGQVMLTPQKNTRTFVNGSSVS 100 (124)
T ss_dssp CEEECCS-EEEEESSTTC-SEECC-S--TTCCSSCEEEEECTTSCEEEEECTTCCEEETTEECC
T ss_pred EEEECCC-CeEECCCCCC-CEEEC-C--CCeecceEEEEECCCCeEEEEECCCCCEEECCEEcC
Confidence 4477766 5899997653 33333 3 4799999999995 6779999999999999999874
No 49
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=97.55 E-value=7.7e-05 Score=67.23 Aligned_cols=62 Identities=18% Similarity=0.225 Sum_probs=46.1
Q ss_pred eeee-ecceEEEeecCC------------CCCcccccCcchhhhcceEEeeecCC----Cceeeec-CCCceEecCccee
Q psy7734 45 EYMV-RQKRITIGRNSS------------RGDVDVNMGLSSFISRRHIEIFFEHP----NFFMTCN-GKNGVFVDGNSIR 106 (349)
Q Consensus 45 ~y~~-~~~~i~iGR~s~------------~~~vdi~lg~~~~ISR~Ha~i~~~~~----~f~l~~~-gknG~~v~~~~ir 106 (349)
+|.+ .+..++|||... ....||-|.. ..|||+||.|.+... .|+|..+ +.||.||||..|.
T Consensus 96 ~~~L~~~s~y~IGR~~~~~~~~~~~~~~e~~~cDIvL~d-p~VSR~HA~I~~~~~~~~~~~~l~DLgStNGTfVNG~rI~ 174 (205)
T 3elv_A 96 RYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPE-ETSSKQHCVIQFRNVRGILKCYVMDLDSSNGTCLNNVVIP 174 (205)
T ss_dssp EEECSSCSEEEEEECCCC---------CCCCCCSEEECC-TTSCTTCEEEEEEEETTEEEEEEEECSCSSCCEETTEECC
T ss_pred EEEecCCCceeecccccccccccccccccCccceEEeCC-CCCCcccEEEEEecCCCceeEEEEeCCCCCCCeECCEECC
Confidence 4555 457899999863 2235666654 479999999998753 3889888 8899999998875
Q ss_pred c
Q psy7734 107 H 107 (349)
Q Consensus 107 h 107 (349)
.
T Consensus 175 ~ 175 (205)
T 3elv_A 175 G 175 (205)
T ss_dssp B
T ss_pred C
Confidence 4
No 50
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=97.46 E-value=0.00015 Score=62.44 Aligned_cols=62 Identities=15% Similarity=0.277 Sum_probs=46.8
Q ss_pred ceeeeecceEEEeecCCCCCcccccCcchhhhcceEEeeecCC-----CceeeecCCCceEecCccee
Q psy7734 44 FEYMVRQKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEHP-----NFFMTCNGKNGVFVDGNSIR 106 (349)
Q Consensus 44 ~~y~~~~~~i~iGR~s~~~~vdi~lg~~~~ISR~Ha~i~~~~~-----~f~l~~~gknG~~v~~~~ir 106 (349)
.-|+++.-.++|||.......||-|.. ..|||+||.|.++.. .+.+...+.||+||||..|.
T Consensus 54 lvy~L~~g~t~IGR~~~~~~~DI~L~~-~~Vs~~H~~i~~~~~~~~~~~~~~d~~S~ngt~VNG~~i~ 120 (154)
T 4ejq_A 54 LLYYIKDGITRVGREDGERRQDIVLSG-HFIKEEHCVFRSDSRGGSEAVVTLEPCEGADTYVNGKKVT 120 (154)
T ss_dssp EEEECCSEEEEEECSSCSSCCSEECCC-TTCCSEEEEEEEECTTSSSCEEEEEECTTCCEEETTEECC
T ss_pred EEEEeCCCCEEEcCCCCCCCCCEEECC-CCcccccEEEEEecCCCceeEEEEecCCCCceEECCEEcC
Confidence 448899999999997655555666532 469999999998753 24444558899999999874
No 51
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=97.19 E-value=0.00041 Score=66.26 Aligned_cols=62 Identities=21% Similarity=0.249 Sum_probs=45.8
Q ss_pred eeeeecceEEEeecCCCCCcccccCcchhhhcceEEeeecC-----------CCceeeec-CCCceEecCcceec
Q psy7734 45 EYMVRQKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEH-----------PNFFMTCN-GKNGVFVDGNSIRH 107 (349)
Q Consensus 45 ~y~~~~~~i~iGR~s~~~~vdi~lg~~~~ISR~Ha~i~~~~-----------~~f~l~~~-gknG~~v~~~~irh 107 (349)
.|++..-..+|||....+..+|-+ ....|||+||.|.++. ..+++..+ ++||.||||+.|+.
T Consensus 15 r~~L~pg~YlIGR~~~~~~~lI~i-dD~SISRqHA~I~v~~v~~~dg~~~~~~~l~I~DLgSknGTfVNGerI~~ 88 (325)
T 3huf_A 15 SRILFPGTYIVGRNVSDDSSHIQV-ISKSISKRHARFTILTPSEKDYFTGGPCEFEVKDLDTKFGTKVNEKVVGQ 88 (325)
T ss_dssp CEEECSEEEEEESSCCCBTTEEEC-CCTTSCSSCEEEEECCCCHHHHHHCCCCCEEEEECSCSSCEEETTEECCT
T ss_pred EEEecCCeEEECCCCCccCceeec-CCCCccccceEEEEecccccccccCCcceEEEEECCCCCCEEECCEECCC
Confidence 455555558899986654323332 5788999999998863 35788886 89999999999864
No 52
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=96.96 E-value=0.00081 Score=54.06 Aligned_cols=54 Identities=19% Similarity=0.187 Sum_probs=41.2
Q ss_pred ecceEEEeecCCCCCcccccCcchhhhcceEEeeecC--CCceeeecCCCceEecCcceecc
Q psy7734 49 RQKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEH--PNFFMTCNGKNGVFVDGNSIRHN 108 (349)
Q Consensus 49 ~~~~i~iGR~s~~~~vdi~lg~~~~ISR~Ha~i~~~~--~~f~l~~~gknG~~v~~~~irhn 108 (349)
....|+|||....+-. .+-+||+|+++..+. +.+.++.+|.|+.+||+..+..|
T Consensus 21 ~g~~v~iGR~p~t~I~------DkrcSR~h~~L~~~~~~g~v~vk~lg~Np~~vng~~l~k~ 76 (102)
T 3kt9_A 21 HLEAVVIGRGPETKIT------DKKCSRQQVQLKAECNKGYVKVKQVGVNPTSIDSVVIGKD 76 (102)
T ss_dssp BTCEEEECSSTTTCCC------CTTSCSSCEEEEEETTTTEEEEEECSSSCCEETTEECCBT
T ss_pred CCCcEEeccCCccccc------cCcccCcceEEEEecCCCEEEEEECcCCCCeECCEEcCCC
Confidence 3456789997654221 478999999998875 46799999999999998765443
No 53
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=96.80 E-value=0.0014 Score=52.31 Aligned_cols=61 Identities=13% Similarity=0.181 Sum_probs=42.0
Q ss_pred cccCceeeeecceEEEeecCCCCCcccccCcchhhhcceEEeeecCCCceeeecCCCc-eEecCcce
Q psy7734 40 QGREFEYMVRQKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEHPNFFMTCNGKNG-VFVDGNSI 105 (349)
Q Consensus 40 ~g~~~~y~~~~~~i~iGR~s~~~~vdi~lg~~~~ISR~Ha~i~~~~~~f~l~~~gknG-~~v~~~~i 105 (349)
.|++---+-......|||+... .+.++ ...|||.||.|.......|+. ++.|| +||||..+
T Consensus 10 ~~~p~v~l~~~~~~rIGR~~~~-~l~Ld---dpsVs~~HAti~~~~~G~~~l-~S~nGtVFVNGqrv 71 (102)
T 3uv0_A 10 GGLPAILLKADTIYRIGRQKGL-EISIA---DESMELAHATACILRRGVVRL-AALVGKIFVNDQEE 71 (102)
T ss_dssp TTSCCEECCTTCCEEEESSTTS-TEECC---CTTSCTTCEEEEEEETTEEEE-EESSSCEEETTEEE
T ss_pred CCcccEEeecCcEEEEcCCCCC-cEEEC---CcccccceEEEEecCCceEEE-EeccCcEEECCEEe
Confidence 4444444445556889998443 44444 567999999998766544443 39999 89999886
No 54
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=96.51 E-value=0.0033 Score=61.37 Aligned_cols=73 Identities=19% Similarity=0.198 Sum_probs=50.3
Q ss_pred ceeeecccC---ceeeeecceEEEeecCCCCCcccc--c---CcchhhhcceEEeeecCC-----CceeeecCCCceEec
Q psy7734 35 AIAKLQGRE---FEYMVRQKRITIGRNSSRGDVDVN--M---GLSSFISRRHIEIFFEHP-----NFFMTCNGKNGVFVD 101 (349)
Q Consensus 35 a~A~l~g~~---~~y~~~~~~i~iGR~s~~~~vdi~--l---g~~~~ISR~Ha~i~~~~~-----~f~l~~~gknG~~v~ 101 (349)
.+++|...+ -.+.+....++|||+.+-+-+.-+ + ..++.|||+|++|+.+.+ .|++...+.||.|||
T Consensus 9 ~~g~l~~~~~~~~~~~l~~~~~~iGR~~~~~~~~~~~~~~~~~~~~~vS~~H~~i~~~~~~~~~~~~~i~D~S~nGt~vn 88 (419)
T 3i6u_A 9 PWARLWALQDGFANLECVNDNYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSGNGTFVN 88 (419)
T ss_dssp CSEEEEECSSSSCCEEECSSEEEEESSTTSSEETTCTTGGGCSGGGGSCTTCEEEECCEETTTEECCEEEECCSSCEEET
T ss_pred CceEeeecCCCCCceEecCCCEEecCCCccCEEECCcccccccccccccccceEEEEEcCCCCceEEEEEECCcCCceEC
Confidence 455554322 357788889999998653322111 1 335799999999986532 399999999999999
Q ss_pred Ccceec
Q psy7734 102 GNSIRH 107 (349)
Q Consensus 102 ~~~irh 107 (349)
+..+..
T Consensus 89 ~~~~~~ 94 (419)
T 3i6u_A 89 TELVGK 94 (419)
T ss_dssp TEECCT
T ss_pred cccccC
Confidence 876643
No 55
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*
Probab=96.14 E-value=0.0052 Score=49.97 Aligned_cols=52 Identities=13% Similarity=0.169 Sum_probs=38.9
Q ss_pred cceEEEeecCCCCCcccccCcchhhhcceEEeeecC--CCceeeecCCCceEecCcceec
Q psy7734 50 QKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEH--PNFFMTCNGKNGVFVDGNSIRH 107 (349)
Q Consensus 50 ~~~i~iGR~s~~~~vdi~lg~~~~ISR~Ha~i~~~~--~~f~l~~~gknG~~v~~~~irh 107 (349)
...++|||....+-. .+-+||+|+++..|. ..+.++.+|.|+.+|||..+..
T Consensus 28 ~g~~viGR~p~t~I~------DkrcSR~hv~L~ad~~~~~v~vk~lG~Np~~vng~~l~k 81 (110)
T 2brf_A 28 GQALVLGRGPLTQVT------DRKCSRTQVELVADPETRTVAVKQLGVNPSTTGTQELKP 81 (110)
T ss_dssp TCCEEECSBTTTTBC------CTTSCSSCEEEEEETTTTEEEEEECSSSCCEEC-CBCCT
T ss_pred CCCEEEcCCCCcccc------cccceeeeEEEEEecCCCEEEEEEcccCCcEECCEEcCC
Confidence 468999998743322 367999999988664 5677899999999999966543
No 56
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2
Probab=96.03 E-value=0.012 Score=48.38 Aligned_cols=68 Identities=15% Similarity=0.121 Sum_probs=46.2
Q ss_pred cceeeecccCce---eee--ecceEEEeecCCCCCcccccCcchhhhcceEEeeecC--CCceeeecCCCceEecCccee
Q psy7734 34 TAIAKLQGREFE---YMV--RQKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEH--PNFFMTCNGKNGVFVDGNSIR 106 (349)
Q Consensus 34 ~a~A~l~g~~~~---y~~--~~~~i~iGR~s~~~~vdi~lg~~~~ISR~Ha~i~~~~--~~f~l~~~gknG~~v~~~~ir 106 (349)
.-.+.|.-.+-. -.+ ....++|||.+...-. .+-+||+|+++..|. ..+.++.+|.|+.+||+..+.
T Consensus 14 ~~~c~L~~~~~~~~~I~Lp~~~g~~viGRgp~t~I~------DkrcSR~qv~L~ad~~~~~v~vk~lG~NP~~vng~~l~ 87 (119)
T 1ujx_A 14 RGRLWLQSPTGGPPPIFLPSDGQALVLGRGPLTQVT------DRKCSRNQVELIADPESRTVAVKQLGVNPSTVGVQELK 87 (119)
T ss_dssp CCCEEEECCSSSCCCCCCCTTSCCEEESBBTTTTBC------CTTSCTTSEEEEEETTTTEEEEEECSSSCCBSSSSBCC
T ss_pred cceEEEEeCCCCCCcEEeccCCCCEEEcCCCCcccc------cccccceeEEEEEecCCCEEEEEEcccCCcEECCEEec
Confidence 455555443322 333 3578999998643322 357999999888764 567889999999999986654
Q ss_pred c
Q psy7734 107 H 107 (349)
Q Consensus 107 h 107 (349)
.
T Consensus 88 k 88 (119)
T 1ujx_A 88 P 88 (119)
T ss_dssp T
T ss_pred C
Confidence 3
No 57
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2
Probab=95.87 E-value=0.0081 Score=50.87 Aligned_cols=68 Identities=15% Similarity=0.132 Sum_probs=46.9
Q ss_pred cceeeecccC---ceeee--ecceEEEeecCCCCCcccccCcchhhhcceEEeeecC--CCceeeecCCCceEecCccee
Q psy7734 34 TAIAKLQGRE---FEYMV--RQKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEH--PNFFMTCNGKNGVFVDGNSIR 106 (349)
Q Consensus 34 ~a~A~l~g~~---~~y~~--~~~~i~iGR~s~~~~vdi~lg~~~~ISR~Ha~i~~~~--~~f~l~~~gknG~~v~~~~ir 106 (349)
+.++.|...+ ....+ ....++|||.....-. .+-+||+|+++..|. +...++.+|.|+.+||+..+.
T Consensus 7 ~~~c~L~p~d~~~~~I~Lp~~~g~vvIGRgPet~It------DkRcSR~qv~L~ad~~~g~V~Vk~lG~NP~~vng~~L~ 80 (143)
T 1yj5_C 7 RGRLWLQSPTGGPPPIFLPSDGQALVLGRGPLTQVT------DRKCSRNQVELIADPESRTVAVKQLGVNPSTVGVHELK 80 (143)
T ss_dssp CEEEEEECCTTSCCCEECCTTTCEEEECSBTTTTBC------CSSSCSSCEEEEEETTTTEEEEEECSSSCCEETTEECC
T ss_pred CCeEEEEecCCCCCcEEeccCCCCEEEcCCCccccc------cccccceeEEEEEecCCCeEEEEEcccCCcEECCEEec
Confidence 4566664433 22444 3578999998643322 256899999988764 567789999999999986653
Q ss_pred c
Q psy7734 107 H 107 (349)
Q Consensus 107 h 107 (349)
.
T Consensus 81 k 81 (143)
T 1yj5_C 81 P 81 (143)
T ss_dssp T
T ss_pred C
Confidence 3
No 58
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=95.27 E-value=0.024 Score=50.04 Aligned_cols=62 Identities=15% Similarity=0.277 Sum_probs=46.8
Q ss_pred ceeeeecceEEEeecCCCCCcccccCcchhhhcceEEeeecCC-----CceeeecCCCceEecCccee
Q psy7734 44 FEYMVRQKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEHP-----NFFMTCNGKNGVFVDGNSIR 106 (349)
Q Consensus 44 ~~y~~~~~~i~iGR~s~~~~vdi~lg~~~~ISR~Ha~i~~~~~-----~f~l~~~gknG~~v~~~~ir 106 (349)
.-|+++.-..+|||..+....||-|.. -.|+++||.|..+.. ...+.-...+.+||||..|.
T Consensus 84 l~y~L~~g~t~VGr~~~~~~~dI~L~G-~~I~~~Hc~i~~~~~~~~~~~vtl~p~~~a~t~VNG~~I~ 150 (184)
T 4egx_A 84 LLYYIKDGITRVGREDGERRQDIVLSG-HFIKEEHCVFRSDSRGGSEAVVTLEPCEGADTYVNGKKVT 150 (184)
T ss_dssp SEEECCSEEEEEECSSSSSCCSEECCS-TTCCSEEEEEEEECCSSCSCEEEEEECTTCCEEETTEECC
T ss_pred EEEEECCCcCcCCCCCcCCCCeEEECc-cccccccEEEEEcCCCCceEEEEEeeCCCCeEEEcCEEcc
Confidence 458888889999998766667777732 469999999988642 24555556678999998874
No 59
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A
Probab=94.15 E-value=0.04 Score=45.56 Aligned_cols=60 Identities=13% Similarity=0.192 Sum_probs=45.7
Q ss_pred eeeecceEEEeecC-CCCCcccccCcchhhhcceEEeeecCCCceeeecCCCceEecCcceecccc
Q psy7734 46 YMVRQKRITIGRNS-SRGDVDVNMGLSSFISRRHIEIFFEHPNFFMTCNGKNGVFVDGNSIRHNLS 110 (349)
Q Consensus 46 y~~~~~~i~iGR~s-~~~~vdi~lg~~~~ISR~Ha~i~~~~~~f~l~~~gknG~~v~~~~irhnLS 110 (349)
.-+-.-.++||... ..+-|..| .-|||+|+++..+...|.+. -+.||+||||.-++....
T Consensus 19 l~L~~~~~~IGs~~~~~DLvL~D----~~Vs~~H~~L~~~~~g~~L~-~s~ngt~vdG~~v~~~~~ 79 (123)
T 4a0e_A 19 VELPHGRCVFGSDPLQSDIVLSD----SEIAPVHLVLMVDEEGIRLT-DSAEPLLQEGLPVPLGTL 79 (123)
T ss_dssp EEECSEEEEEESCTTTCSEECCC----TTSCSSCEEEEEETTEEEEE-EESSCCEETTEECCTTCB
T ss_pred EEcCCCcEEECCCCCCCCEEEeC----CCccceeEEEEECCCeEEEE-eccCCEEECCEEcccccc
Confidence 34445678899875 44444444 67899999999999999996 788999999988776543
No 60
>1uss_A Histone H1; DNA binding protein, linker histone, DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13 PDB: 1yqa_A
Probab=82.29 E-value=1.3 Score=34.16 Aligned_cols=32 Identities=9% Similarity=0.358 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHcCCCC-CcCHHHHHHHHhccCC
Q psy7734 294 SYAQLIVQAVASAHDK-QLTLSGIYSFITKNYP 325 (349)
Q Consensus 294 sY~~lI~~Ai~~sp~~-~ltl~~Iy~~i~~~~p 325 (349)
+|.+||..||....++ -.++.-|..||+.+|+
T Consensus 9 ~y~~MI~eAI~alker~GsS~~AIkKyI~~~y~ 41 (88)
T 1uss_A 9 TYKEMILKSMPQLNDGKGSSRIVLKKYVKDTFS 41 (88)
T ss_dssp CHHHHHHHHHHHSCCTTSBCHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHHHhCC
Confidence 6999999999775554 5899999999999976
No 61
>1uhm_A Histone H1, histone HHO1P; winged helix-turn-helix, linker histone, riken structural genomics/proteomics initiative, RSGI; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=80.61 E-value=1.1 Score=33.57 Aligned_cols=33 Identities=27% Similarity=0.621 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHcCCCC-CcCHHHHHHHHhccCCC
Q psy7734 294 SYAQLIVQAVASAHDK-QLTLSGIYSFITKNYPY 326 (349)
Q Consensus 294 sY~~lI~~Ai~~sp~~-~ltl~~Iy~~i~~~~py 326 (349)
+|.+||..||....++ -.++.-|-.||+.+|+.
T Consensus 6 ~y~~MI~eAI~~lker~GsS~~AIkKyI~~~y~~ 39 (78)
T 1uhm_A 6 SYRELIIEGLTALKERKGSSRPALKKFIKENYPI 39 (78)
T ss_dssp CHHHHHHHHHHHHCCSSCEEHHHHHHHHHTTSCT
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCCC
Confidence 6999999999764443 47999999999999773
No 62
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=79.24 E-value=1.3 Score=40.24 Aligned_cols=56 Identities=23% Similarity=0.357 Sum_probs=37.6
Q ss_pred ceeeeecceEEEeecCCCCCcccccCcchhhhcceEEeeec--C--CCceeeecC-CCc-eEecCcceec
Q psy7734 44 FEYMVRQKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFE--H--PNFFMTCNG-KNG-VFVDGNSIRH 107 (349)
Q Consensus 44 ~~y~~~~~~i~iGR~s~~~~vdi~lg~~~~ISR~Ha~i~~~--~--~~f~l~~~g-knG-~~v~~~~irh 107 (349)
..|.+..+.|+|||+ +..++-++ +. + ||.+..+ . +.|++++++ .|| +||||..|.-
T Consensus 85 ~~y~~~~~~itIG~~-~~~dI~l~-~~---~---~~~~~~~~~~~~~~~~l~~l~s~ngtvyvNg~~i~~ 146 (238)
T 1wv3_A 85 FAYPSIQDTMTIGPN-AYDDMVIQ-SL---M---NAIIIKDFQSIQESQYVRIVHDKNTDVYINYELQEQ 146 (238)
T ss_dssp EECCSSCSEEEEESS-TTSSEECT-TC---S---SCEEEECGGGHHHHCEEEEECCTTCCEEETTEECCS
T ss_pred EEEecCCceEEEeCC-CCCeEEeC-CC---e---eEEEEecccCcCCcEEEEEccCCCCCEEECCEEecc
Confidence 446666669999995 34444444 22 2 4656655 2 489999987 898 6999987753
No 63
>1hst_A Histone H5; chromosomal protein; 2.60A {Gallus gallus} SCOP: a.4.5.13
Probab=78.09 E-value=1.8 Score=33.57 Aligned_cols=32 Identities=19% Similarity=0.475 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHcCCCC-CcCHHHHHHHHhccCC
Q psy7734 294 SYAQLIVQAVASAHDK-QLTLSGIYSFITKNYP 325 (349)
Q Consensus 294 sY~~lI~~Ai~~sp~~-~ltl~~Iy~~i~~~~p 325 (349)
+|.+||..||....+. -.++.-|-.||+.+|+
T Consensus 9 ~y~~MI~eAI~~lker~GsS~~AI~KyI~~~y~ 41 (90)
T 1hst_A 9 TYSEMIAAAIRAEKSRGGSSRQSIQKYIKSHYK 41 (90)
T ss_dssp CHHHHHHHHHHTCCCSSCEEHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHhccCCCCCHHHHHHHHHHHcc
Confidence 6999999999876554 4789999999999976
No 64
>1ust_A Histone H1; DNA binding protein, linker histone, DNA binding domain, winged helix fold; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=74.09 E-value=1.8 Score=33.67 Aligned_cols=34 Identities=26% Similarity=0.582 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHcCCCC-CcCHHHHHHHHhccCCC
Q psy7734 293 YSYAQLIVQAVASAHDK-QLTLSGIYSFITKNYPY 326 (349)
Q Consensus 293 ~sY~~lI~~Ai~~sp~~-~ltl~~Iy~~i~~~~py 326 (349)
-+|.+||..||....++ -.++.-|-.||+.+|+.
T Consensus 8 P~y~~MI~eAI~alker~GsS~~AIkKyI~~~y~~ 42 (93)
T 1ust_A 8 KSYRELIIEGLTALKERKGSSRPALKKFIKENYPI 42 (93)
T ss_dssp CCHHHHHHHHHTTTTTTSCEEHHHHHHHHHHHCHH
T ss_pred CCHHHHHHHHHHHcccCCCcCHHHHHHHHHHHCCC
Confidence 36999999999775544 57899999999999763
No 65
>2rqp_A Heterochromatin protein 1-binding protein 3; histone H1, alternative splicing, chromosomal protein, DNA-binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=69.74 E-value=2.5 Score=32.37 Aligned_cols=35 Identities=14% Similarity=0.358 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHcCCC-CCcCHHHHHHHHhccCCCc
Q psy7734 293 YSYAQLIVQAVASAHD-KQLTLSGIYSFITKNYPYY 327 (349)
Q Consensus 293 ~sY~~lI~~Ai~~sp~-~~ltl~~Iy~~i~~~~pyy 327 (349)
-+|.+||..||....+ +-.++.-|..||+.+|+-+
T Consensus 10 p~y~~MI~eAI~~Lker~GsS~~AI~KyI~~~y~~~ 45 (88)
T 2rqp_A 10 PKMDAILTEAIKACFQKSGASVVAIRKYIIHKYPSL 45 (88)
T ss_dssp CCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHCSTH
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHHHhCCCC
Confidence 3799999999965332 3479999999999999843
No 66
>2lso_A Histone H1X; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, nuclear protein; NMR {Homo sapiens}
Probab=57.40 E-value=3 Score=31.70 Aligned_cols=33 Identities=24% Similarity=0.300 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHcCCCC-CcCHHHHHHHHhccCC
Q psy7734 293 YSYAQLIVQAVASAHDK-QLTLSGIYSFITKNYP 325 (349)
Q Consensus 293 ~sY~~lI~~Ai~~sp~~-~ltl~~Iy~~i~~~~p 325 (349)
-+|.+||..||....++ -.++.-|..+|+.+|.
T Consensus 6 ~~y~~MI~eAI~aLker~GSS~~AI~K~i~~~~~ 39 (83)
T 2lso_A 6 GKYSQLVVETIRRLGERNGSSLAKIYTEAKKVPW 39 (83)
Confidence 38999999999765443 4688899999999985
No 67
>1ghc_A GH1; chromosomal protein; NMR {Gallus gallus} SCOP: a.4.5.13
Probab=42.29 E-value=6.2 Score=29.02 Aligned_cols=30 Identities=27% Similarity=0.451 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHcCCC-CCcCHHHHHHHHhcc
Q psy7734 294 SYAQLIVQAVASAHD-KQLTLSGIYSFITKN 323 (349)
Q Consensus 294 sY~~lI~~Ai~~sp~-~~ltl~~Iy~~i~~~ 323 (349)
+|.+||..||....+ +-.++.-|..||+.+
T Consensus 5 ~y~~mI~~AI~alker~GsS~~AI~Kyi~~~ 35 (75)
T 1ghc_A 5 SVTELITKAVSASKERKGLSLAALKKALAAG 35 (75)
T ss_dssp SHHHHHHHHHHHCSSSSCCTTSSGGGSSSSS
T ss_pred CHHHHHHHHHHHhccCCcccHHHHHHHHHHc
Confidence 699999999987654 347889999999999
No 68
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=28.23 E-value=19 Score=33.69 Aligned_cols=39 Identities=15% Similarity=0.435 Sum_probs=31.7
Q ss_pred HHHHHHHHHHcCCCCCcCHHHH--HHHHhccCCCcccCCCCCcc
Q psy7734 295 YAQLIVQAVASAHDKQLTLSGI--YSFITKNYPYYRTADKGWQV 336 (349)
Q Consensus 295 Y~~lI~~Ai~~sp~~~ltl~~I--y~~i~~~~pyy~~~~~gWqn 336 (349)
-..||...|.-.|.+|+|..|+ +.||.+| |||+.- .|++
T Consensus 261 ~~dli~~lL~~dp~~R~t~~e~~~~~~i~~H-p~F~~i--dw~~ 301 (311)
T 4aw0_A 261 ARDLVEKLLVLDATKRLGCEEMEGYGPLKAH-PFFESV--TWEN 301 (311)
T ss_dssp HHHHHHHHSCSSGGGSTTSGGGTCHHHHHTS-GGGTTC--CCTT
T ss_pred HHHHHHHHccCCHhHCcChHHHcCCHHHHCC-CCcCCC--CHHH
Confidence 5679999999999999999998 6778765 999743 4764
No 69
>2kzv_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; NMR {Chromobacterium violaceum}
Probab=23.30 E-value=1.6e+02 Score=22.49 Aligned_cols=43 Identities=19% Similarity=0.303 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHc--CCCCCcCHHHHHHHHhccCCCcccCCCCCc
Q psy7734 293 YSYAQLIVQAVAS--AHDKQLTLSGIYSFITKNYPYYRTADKGWQ 335 (349)
Q Consensus 293 ~sY~~lI~~Ai~~--sp~~~ltl~~Iy~~i~~~~pyy~~~~~gWq 335 (349)
-.-..||..||.. ..++-..|++|-++|.+.+|=|....=|.+
T Consensus 7 ~~l~~ll~~Ai~~~~dedGWa~Lg~vG~~i~k~~PdFD~RnYGy~ 51 (92)
T 2kzv_A 7 HPLQDMFTSAIEAVARDSGWAELSAVGSYLAKNDPSFDPRNWGHG 51 (92)
T ss_dssp SSHHHHHHHHHHHHTTTTSSCBHHHHHHHHHHHCTTCCTTTTCSS
T ss_pred HHHHHHHHHHHHHhcCCCCcEeHHHHHHHHHHhCcCCCccccCcc
Confidence 3567899999955 457789999999999999998876655544
Done!