RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7734
(349 letters)
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double
helix, transcription-DNA complex; HET: DNA; 2.50A {Homo
sapiens} PDB: 1d5v_A
Length = 102
Score = 96.6 bits (241), Expect = 4e-25
Identities = 24/50 (48%), Positives = 34/50 (68%)
Query: 103 NSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPGSEHKLIEQAFRRRRQR 152
NSIRH+LS N F+KV RS ++PGKGS+W + P S + + RR++R
Sbjct: 49 NSIRHSLSFNDCFVKVARSPDKPGKGSYWALHPSSGNMFENGCYLRRQKR 98
Score = 87.3 bits (217), Expect = 1e-21
Identities = 24/47 (51%), Positives = 29/47 (61%)
Query: 289 SKPPYSYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRTADKGWQ 335
+KPPYSY LI A+ A K LTLS IY +I +PYYR + WQ
Sbjct: 2 AKPPYSYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQ 48
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis,
winged helix protein, protein/DNA complex; HET: DNA; NMR
{Rattus norvegicus} SCOP: a.4.5.14
Length = 97
Score = 95.8 bits (239), Expect = 8e-25
Identities = 28/50 (56%), Positives = 35/50 (70%)
Query: 103 NSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPGSEHKLIEQAFRRRRQR 152
NSIRHNLSLN F+K+PR PGKG++W +DP SE +F RRR+R
Sbjct: 48 NSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKR 97
Score = 85.8 bits (213), Expect = 4e-21
Identities = 24/46 (52%), Positives = 29/46 (63%)
Query: 290 KPPYSYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRTADKGWQ 335
KPPYSY LI A+ + K+LTLSGI FI+ +PYYR WQ
Sbjct: 2 KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQ 47
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding
domain, forkhead transcription factors, interleukin
enhancer binding factor; 2.4A {Homo sapiens} SCOP:
a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A
Length = 111
Score = 95.9 bits (239), Expect = 1e-24
Identities = 46/50 (92%), Positives = 47/50 (94%)
Query: 103 NSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPGSEHKLIEQAFRRRRQR 152
NSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDP SE KLIEQAFR+RR R
Sbjct: 62 NSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPASESKLIEQAFRKRRPR 111
Score = 90.1 bits (224), Expect = 1e-22
Identities = 41/51 (80%), Positives = 44/51 (86%)
Query: 285 SQDDSKPPYSYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRTADKGWQ 335
DSKPPYSYAQLIVQA+ A DKQLTL+GIY+ ITKNYPYYRTADKGWQ
Sbjct: 11 RGSDSKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQ 61
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus
norvegicus} SCOP: a.4.5.14
Length = 109
Score = 94.7 bits (236), Expect = 3e-24
Identities = 28/50 (56%), Positives = 35/50 (70%)
Query: 103 NSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPGSEHKLIEQAFRRRRQR 152
NSIRHNLSLN F+K+PR PGKG++W +DP SE +F RRR+R
Sbjct: 49 NSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKR 98
Score = 85.1 bits (211), Expect = 9e-21
Identities = 24/46 (52%), Positives = 29/46 (63%)
Query: 290 KPPYSYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRTADKGWQ 335
KPPYSY LI A+ + K+LTLSGI FI+ +PYYR WQ
Sbjct: 3 KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQ 48
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged;
winged helix protein, structure, transcription; NMR
{Rattus norvegicus} SCOP: a.4.5.14
Length = 100
Score = 87.7 bits (218), Expect = 7e-22
Identities = 26/51 (50%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 103 NSIRHNLSLNRYFIKVPRSQEEP-GKGSFWRIDPGSEHKLIEQAFRRRRQR 152
NS+RHNLSLN F+KV R P GK ++W ++P SE+ + FRRRR R
Sbjct: 48 NSVRHNLSLNDCFVKVLRDPSRPWGKDNYWMLNPNSEYTFADGVFRRRRYR 98
Score = 83.1 bits (206), Expect = 4e-20
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 290 KPPYSYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRTADKGWQ 335
KPPYSY LI A+ + +LTL+ I ++ +P++R + GW+
Sbjct: 2 KPPYSYIALITMAIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWR 47
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer,
monomer, winged-helix, magnesium, transcription/DNA
complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F
2kiu_A 3qrf_F
Length = 93
Score = 87.0 bits (216), Expect = 1e-21
Identities = 20/46 (43%), Positives = 32/46 (69%)
Query: 290 KPPYSYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRTADKGWQ 335
+PP++YA LI QA+ + D+QLTL+ IYS+ T+ + Y+R W+
Sbjct: 3 RPPFTYATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWK 48
Score = 70.0 bits (172), Expect = 2e-15
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 10/55 (18%)
Query: 103 NSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPGSEHKLIEQAFRRRRQRGVPCF 157
N++RHNLSL++ F++V KG+ W +D K R ++ G P
Sbjct: 49 NAVRHNLSLHKCFVRVEN-----VKGAVWTVDEVEYQK-----RRSQKITGSPTL 93
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription
factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens}
Length = 142
Score = 83.4 bits (206), Expect = 9e-20
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 103 NSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPGSEHKLIEQAFRRRRQRGVPCFRAPFG 162
NSIRHNLSL+ F++ GK SFW I P + L + G P
Sbjct: 65 NSIRHNLSLHDMFVRETS---ANGKVSFWTIHPSANRYLTLDQVFKPLDPGSPQLPEHLE 121
Query: 163 LSSR 166
+
Sbjct: 122 SQQK 125
Score = 80.7 bits (199), Expect = 8e-19
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 285 SQDDSKPPYSYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYR-TADKGWQ 335
+ +PPYSY +I A+ S K++TL IY++I ++PY++ A GW+
Sbjct: 13 NSVSERPPYSYMAMIQFAINSTERKRMTLKDIYTWIEDHFPYFKHIAKPGWK 64
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP;
1.87A {Homo sapiens} PDB: 3co6_C*
Length = 110
Score = 80.2 bits (198), Expect = 6e-19
Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 5/56 (8%)
Query: 285 SQDDSKPPYSYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYR-----TADKGWQ 335
S+ ++ SYA+LI QA+ SA +K+LTL+ IY ++ + PY++ + GW+
Sbjct: 19 SRRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWK 74
Score = 68.3 bits (167), Expect = 1e-14
Identities = 19/36 (52%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 103 NSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPGSE 138
NSIRHNLSL+ FIKV E GK S+W ++P
Sbjct: 75 NSIRHNLSLHSKFIKVHN--EATGKSSWWMLNPEGG 108
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding
domain; forkhead BOX, winged helix; 1.87A {Homo sapiens}
SCOP: a.4.5.14
Length = 85
Score = 79.3 bits (196), Expect = 6e-19
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 5/55 (9%)
Query: 286 QDDSKPPYSYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYR-----TADKGWQ 335
+ ++ SYA+LI QA+ SA +K+LTL+ IY ++ + PY++ + GW+
Sbjct: 1 RRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWK 55
Score = 65.8 bits (161), Expect = 6e-14
Identities = 18/32 (56%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 103 NSIRHNLSLNRYFIKVPRSQEEPGKGSFWRID 134
NSIRHNLSL+ FIKV E GK S+W ++
Sbjct: 56 NSIRHNLSLHSKFIKVHN--EATGKSSWWMLN 85
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal
rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB:
3co7_C* 2k86_A 2uzk_A
Length = 117
Score = 77.2 bits (190), Expect = 1e-17
Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 5/56 (8%)
Query: 285 SQDDSKPPYSYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYR-----TADKGWQ 335
S+ ++ SYA LI +A+ S+ +K+LTLS IY ++ K+ PY++ + GW+
Sbjct: 6 SRRNAWGNLSYADLITKAIESSAEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWK 61
Score = 67.5 bits (165), Expect = 3e-14
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 103 NSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPGSEHKLIEQAFRRRRQR 152
NSIRHNLSL+ FI+V E GK S+W ++P RRR
Sbjct: 62 NSIRHNLSLHSKFIRVQN--EGTGKSSWWMLNPEGGKS---GKSPRRRAA 106
>1e17_A AFX; DNA binding domain, winged helix; NMR {Homo sapiens} SCOP:
a.4.5.14
Length = 150
Score = 74.7 bits (183), Expect = 2e-16
Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 5/56 (8%)
Query: 285 SQDDSKPPYSYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYR-----TADKGWQ 335
S+ ++ SYA+LI QA+ SA +K+LTL+ IY ++ + PY++ + GW+
Sbjct: 35 SRRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWK 90
Score = 68.1 bits (166), Expect = 4e-14
Identities = 22/50 (44%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 103 NSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPGSEHKLIEQAFRRRRQR 152
NSIRHNLSL+ FIKV E GK S+W ++P RRR
Sbjct: 91 NSIRHNLSLHSKFIKVHN--EATGKSSWWMLNPEGGKS---GKAPRRRAA 135
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell
cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP:
b.26.1.2
Length = 127
Score = 45.2 bits (107), Expect = 2e-06
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 45 EYMVRQKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEHPNFFMTCNG-KNGVFVDGN 103
E +K T GRN D ++G S +S +H +I + + NG +++G
Sbjct: 30 EKRSIKKVWTFGRNP---ACDYHLGNISRLSNKHFQILLGEDGNLLLNDISTNGTWLNGQ 86
Query: 104 SIRHN 108
+ N
Sbjct: 87 KVEKN 91
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain
swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB:
1lgq_A
Length = 116
Score = 43.2 bits (102), Expect = 9e-06
Identities = 11/71 (15%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Query: 40 QGREFEYMVRQKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEHPN--FFMTCNGKNG 97
+ E ++R++ TIGR D++ + +S H I + + + +G
Sbjct: 13 EEGEPHVLLRKREWTIGRRR---GCDLSFPSNKLVSGDHCRIVVDEKSGQVTLEDTSTSG 69
Query: 98 VFVDGNSIRHN 108
++ +
Sbjct: 70 TVINKLKVVKK 80
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide,
phosphoprotein, transferase; NMR {Saccharomyces
cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A*
1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Length = 164
Score = 44.2 bits (104), Expect = 1e-05
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 45 EYMVRQKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEHPNFFMTCNG-KNGVFVDGN 103
E +K T GRN D ++G S +S +H +I + + NG +++G
Sbjct: 58 EKRSIKKVWTFGRNP---ACDYHLGNISRLSNKHFQILLGEDGNLLLNDISTNGTWLNGQ 114
Query: 104 SIRHN 108
+ N
Sbjct: 115 KVEKN 119
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel
beta-sheets, phosphopeptide binding motif, structural
genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Length = 118
Score = 43.2 bits (102), Expect = 1e-05
Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Query: 39 LQGREFEYMVRQKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEHPNFFMT-CNGKNG 97
+G +Y I +GR ++ + + IS +H+ I + N+ + NG
Sbjct: 22 REGDALDYKPGS-TIRVGRIVRGNEIAIK---DAGISTKHLRIESDSGNWVIQDLGSSNG 77
Query: 98 VFVDGNSIRHN 108
++ N++
Sbjct: 78 TLLNSNALDPE 88
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2;
phosphoprotein-binding domain, checkpoint kinase,
transferase; HET: TPO; 2.7A {Homo sapiens} SCOP:
b.26.1.2
Length = 149
Score = 42.7 bits (100), Expect = 3e-05
Identities = 14/80 (17%), Positives = 23/80 (28%), Gaps = 10/80 (12%)
Query: 39 LQGREFEYMVRQKRITIGRNSS-----RGDVDVNMGLSSFISRRHIEIFFE-----HPNF 88
LQ GR+ S + S++H IF E
Sbjct: 36 LQDGFANLECVNDNYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIA 95
Query: 89 FMTCNGKNGVFVDGNSIRHN 108
++ + NG FV+ +
Sbjct: 96 YIEDHSGNGTFVNTELVGKG 115
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics,
PSI-2, protein structure in midwest center for
structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Length = 106
Score = 40.8 bits (96), Expect = 6e-05
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 39 LQGREFEYMVRQKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEHPNFFM--TCNGKN 96
G EF + K +G + D+ ++ ISR+H +I + N + KN
Sbjct: 14 NIGAEFH-LDSGKTYIVGSDPQVADIVLS---DMSISRQHAKIIIGNDNSVLIEDLGSKN 69
Query: 97 GVFVDGNSIRH 107
GV V+G I H
Sbjct: 70 GVIVEGRKIEH 80
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA
domain, synthetic peptide, peptide binding protein;
1.50A {Mycobacterium tuberculosis} PDB: 3poa_A* 2lc1_A
Length = 100
Score = 39.2 bits (92), Expect = 2e-04
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 40 QGREFEYMVRQKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEHPNFFMT-CNGKNGV 98
GR ++ +R+ IGR + + +SRRH+EI ++ + N NG
Sbjct: 14 SGRTYQ--LREGSNIIGR-GQDAQFRLP---DTGVSRRHLEIRWDGQVALLADLNSTNGT 67
Query: 99 FVDGNSI 105
V+ +
Sbjct: 68 TVNNAPV 74
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein
complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium
smegmatis}
Length = 115
Score = 39.7 bits (93), Expect = 2e-04
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 7/69 (10%)
Query: 39 LQGREFEYMVRQKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEHPNFFMT-CNGKNG 97
G F + Q + GR D+ ++ +SRRH E E F + NG
Sbjct: 21 NAGSRFL--LDQPTTSAGR-HPDSDIFLD---DVTVSRRHAEFRLEGGEFQVVDVGSLNG 74
Query: 98 VFVDGNSIR 106
+V+ +
Sbjct: 75 TYVNREPVD 83
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain,
kinase substrate, GARA, FHA, cytoplasm, phosphoprotein;
HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Length = 143
Score = 39.1 bits (91), Expect = 5e-04
Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 7/69 (10%)
Query: 39 LQGREFEYMVRQKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEHPNFFMT-CNGKNG 97
G F + Q T GR D+ ++ +SRRH E F + NG
Sbjct: 56 NAGARFL--LDQPTTTAGR-HPESDIFLD---DVTVSRRHAEFRINEGEFEVVDVGSLNG 109
Query: 98 VFVDGNSIR 106
+V+
Sbjct: 110 TYVNREPRN 118
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular
interaction, glutamate metabolism, phosphoprotein,
protein binding; HET: TPO; NMR {Mycobacterium
tuberculosis} PDB: 2kkl_A
Length = 162
Score = 39.1 bits (91), Expect = 5e-04
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 7/69 (10%)
Query: 39 LQGREFEYMVRQKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEHPNFFMT-CNGKNG 97
G F + Q + GR D+ ++ +SRRH E E+ F + NG
Sbjct: 65 NAGSRFL--LDQAITSAGR-HPDSDIFLD---DVTVSRRHAEFRLENNEFNVVDVGSLNG 118
Query: 98 VFVDGNSIR 106
+V+ +
Sbjct: 119 TYVNREPVD 127
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase,
signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP:
b.26.1.2
Length = 138
Score = 38.3 bits (89), Expect = 6e-04
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 50 QKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEHPN-FFMTCNG-KNGVFVDGNSI 105
+T+GR V+ ISR H + + + N NGV+++ +
Sbjct: 27 GCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKSLNGVWLNRARL 84
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP:
b.26.1.2 PDB: 2aff_A*
Length = 128
Score = 38.2 bits (89), Expect = 7e-04
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 7/73 (9%)
Query: 41 GREFEYMVRQKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEHPNFFMT-CNGKNGVF 99
G F + GR D+ + +S++H +I + + N
Sbjct: 25 GPHFP--LSLSTCLFGRGIE-CDIRIQ---LPVVSKQHCKIEIHEQEAILHNFSSTNPTQ 78
Query: 100 VDGNSIRHNLSLN 112
V+G+ I + L
Sbjct: 79 VNGSVIDEPVRLK 91
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring
finger protein 8, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.26.1.2
Length = 145
Score = 38.4 bits (89), Expect = 7e-04
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 50 QKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEHPN-FFMT-CNGKNGVFVDGNSI 105
+T+GR V+ ISR H + + + NGV+++ +
Sbjct: 35 GCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKSLNGVWLNRARL 92
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr
kinase, pseudokinase, FHA domain, REG phosphorylation;
HET: TPO; 2.71A {Mycobacterium tuberculosis}
Length = 157
Score = 36.0 bits (83), Expect = 0.005
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 45 EYMVRQKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEHPNFFMT-CNGKNGVFVDGN 103
Y +R+ IGR + + +SRRH+EI ++ + N NG V+
Sbjct: 79 TYQLREGSNIIGR-GQDAQFRLP---DTGVSRRHLEIRWDGQVALLADLNSTNGTTVNNA 134
Query: 104 SIR 106
++
Sbjct: 135 PVQ 137
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase;
NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Length = 139
Score = 35.7 bits (82), Expect = 0.006
Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 10/81 (12%)
Query: 39 LQGREFE---YMVRQKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEHPNFFMTC--- 92
G + + + +GR S D+ + S +S +H +I + F
Sbjct: 17 AIGLQHAVNSTSSSKLPVKLGR-VSPSDLALK---DSEVSGKHAQITWNSTKFKWELVDM 72
Query: 93 NGKNGVFVDGNSIRHNLSLNR 113
NG V+ +SI H +R
Sbjct: 73 GSLNGTLVNSHSISHPDLGSR 93
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA
domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO;
1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A*
3uot_A* 3un0_B
Length = 132
Score = 35.2 bits (81), Expect = 0.008
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 7/71 (9%)
Query: 40 QGREFEYMVRQKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEHPN--FFMT-CNGKN 96
G E ++ + + +GR+ D V + S IS++H I N + C N
Sbjct: 34 HGPERDFPLYLGKNVVGRSP---DCSVALPFPS-ISKQHAVIEISAWNKAPILQDCGSLN 89
Query: 97 GVFVDGNSIRH 107
G +
Sbjct: 90 GTQIVKPPRVL 100
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide,
cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae}
PDB: 2jql_A*
Length = 151
Score = 34.6 bits (79), Expect = 0.017
Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 13/97 (13%)
Query: 20 STSPSPSKIQWKSGTAIAKLQGREFEYMVRQKRITIGRNSSRGDVDVNMGLSSFISRRHI 79
S PS + + ++ E + TIGR+ S DV ++ IS H
Sbjct: 8 SNKPSSEYTCLGHLVNLIPGKEQKVEI-TNRNVTTIGRSRS-CDVILS---EPDISTFHA 62
Query: 80 EIFFEHPN--------FFMTCNGKNGVFVDGNSIRHN 108
E + + +NG F++GN +
Sbjct: 63 EFHLLQMDVDNFQRNLINVIDKSRNGTFINGNRLVKK 99
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.027
Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 49/145 (33%)
Query: 161 FGLSSRCTLRFPSTNIRLQFQSLVNESDPAPTGQSVSSSGVGVMGNP--ATSSLLPPLRI 218
F + RC +P+T++ S++ +S + V S + + +
Sbjct: 304 FFIGVRCYEAYPNTSLP---PSILEDS--LENNEGVPSPMLSISNLTQEQVQDYVNKTNS 358
Query: 219 NIPDHPHTEISSSPFPSPTGTISAANSCPTSPRGLHN-RRN--VS---ADLH---MAAHY 269
++P EIS L N +N VS L+ +
Sbjct: 359 HLPAGKQVEIS-----------------------LVNGAKNLVVSGPPQSLYGLNLTLRK 395
Query: 270 AAAHTNVVNHMSLSISQDDSKPPYS 294
A A + + D S+ P+S
Sbjct: 396 AKAPSGL----------DQSRIPFS 410
Score = 33.9 bits (77), Expect = 0.093
Identities = 43/309 (13%), Positives = 72/309 (23%), Gaps = 125/309 (40%)
Query: 100 VDGNSIRHNLSLN----RYFIKVPRS-------------------------QEEPGK--- 127
+D S R L+L+ + + VP + +EP
Sbjct: 1 MDAYSTRP-LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE 59
Query: 128 --GSF-----WRIDPGSEH------KLIEQAFRRR--RQRGVPCFRAPFGLSSRCTLRFP 172
G F ++P L F + A + TL
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKT 119
Query: 173 STNIRLQFQSLVNESDPAPTG------QSVSSSGVGVM------GNP------------- 207
I+ + + P ++V ++ GN
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT 179
Query: 208 -----------ATSSLLPPLRINI---PDHPHT-EISS-----SPFPSPTGTISAANSCP 247
+ +L +R + I S P +S SCP
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP 239
Query: 248 TSPRGLHNRRNVSADLHMAAHYAAA-------HTNVVNHMS--LSISQDDSKPPYSYAQL 298
G+ L AHY + +++ SQ
Sbjct: 240 LI--GV-------IQL---AHYVVTAKLLGFTPGELRSYLKGATGHSQG----------- 276
Query: 299 IVQAVASAH 307
+V AVA A
Sbjct: 277 LVTAVAIAE 285
Score = 31.6 bits (71), Expect = 0.55
Identities = 44/264 (16%), Positives = 80/264 (30%), Gaps = 89/264 (33%)
Query: 9 ESDAW------ALLALK--------------STSPSPSKIQWKSGTAIAKLQGREFEYM- 47
E+D+W A+ +TS PS ++ ++ +G M
Sbjct: 285 ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE----DSLENNEGVP-SPML 339
Query: 48 -VR-------QKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEHPNFFMTCNGKNGVF 99
+ Q + N L + + +EI NG +
Sbjct: 340 SISNLTQEQVQDYVN----------KTNSHLPA---GKQVEI----SLV----NGAKNLV 378
Query: 100 VDGN--SIRH-NLSLNRYFI-------KVPRSQEEPGKGSFWRIDPGSE--H-KLIEQAF 146
V G S+ NL+L + ++P S+ + K S R P + H L+ A
Sbjct: 379 VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL-KFS-NRFLPVASPFHSHLLVPAS 436
Query: 147 RRRRQRGVPCFRAPFGLSSRCTLRFP--ST----NIRLQFQSLVNE------SDPA--PT 192
+ + F ++ P T ++R+ S+ P T
Sbjct: 437 DLINKD-LVKNNVSFNAKD---IQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWET 492
Query: 193 GQSVSSSGVGVMGNPATSSLLPPL 216
++ + G P +S L L
Sbjct: 493 TTQFKATHILDFG-PGGASGLGVL 515
Score = 28.5 bits (63), Expect = 4.2
Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 19/114 (16%)
Query: 248 TSP--RGLHNRRNVSADLHMAAHYAAAHTNVV--NHMSLSISQDDSKPPY---SYAQLIV 300
TS + + NR AD H Y + ++V N ++L+I K +Y+ +I
Sbjct: 1638 TSKAAQDVWNR----ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIF 1693
Query: 301 QAVASAHDKQLTLSGIYSFITKNYPYYRTADKGWQVNYTY-----LDTTSVVAW 349
+ + K + + + +Y + ++KG ++ T L A+
Sbjct: 1694 ETIVDGKLKTEKIFKEINEHSTSYTFR--SEKG-LLSATQFTQPALTLMEKAAF 1744
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase,
FHA domain, ATP-binding, cell cycle, mutation,
LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens}
PDB: 3i6w_A
Length = 419
Score = 34.3 bits (79), Expect = 0.053
Identities = 12/70 (17%), Positives = 21/70 (30%), Gaps = 10/70 (14%)
Query: 49 RQKRITIGRNSS-----RGDVDVNMGLSSFISRRHIEIFFEHPN-----FFMTCNGKNGV 98
GR+ S + S++H IF E ++ + NG
Sbjct: 26 VNDNYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSGNGT 85
Query: 99 FVDGNSIRHN 108
FV+ +
Sbjct: 86 FVNTELVGKG 95
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain,
BRCT domain, phosphoprotein binding, phosp binding, DNA
repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe}
PDB: 3hue_A* 3i0m_A* 3i0n_A*
Length = 325
Score = 32.9 bits (74), Expect = 0.12
Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 15/94 (15%)
Query: 30 WKSGTAIAKLQGREFEYMVRQKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEHPN-- 87
W L+G+ + +GRN S + + S IS+RH P+
Sbjct: 2 WIIEAEGDILKGKSRI--LFPGTYIVGRNVSDDSSHIQVISKS-ISKRHARFTILTPSEK 58
Query: 88 ----------FFMTCNGKNGVFVDGNSIRHNLSL 111
+ K G V+ + N
Sbjct: 59 DYFTGGPCEFEVKDLDTKFGTKVNEKVVGQNGDS 92
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus} SCOP: b.26.1.2
Length = 120
Score = 30.6 bits (69), Expect = 0.23
Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 5/63 (7%)
Query: 46 YMVRQKRITIGRNSSRGDVDVNMGLS-SFISRRHIEIFFEHPNFFMT-CNGKNGVFVDGN 103
Y ++ +G D ++ L I H ++ +T + +VDG
Sbjct: 31 YRLQLSVTEVGTEKFD---DNSIQLFGPGIQPHHCDLTNMDGVVTVTPRSMDAETYVDGQ 87
Query: 104 SIR 106
I
Sbjct: 88 RIS 90
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 31.0 bits (71), Expect = 0.60
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 5 SGSNESDAWALLALKSTSPSPSKIQ-WKSGT 34
S S + L++ K P + + W S
Sbjct: 7 SQSLYREIHQLISFKDVLPDKNLLPDWSSNK 37
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein,
NESG, structural genomics, PSI-2, protein structure
initiative; 2.50A {Synechocystis SP}
Length = 131
Score = 29.0 bits (65), Expect = 1.1
Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 16/77 (20%)
Query: 45 EYMVRQKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEHPN-----------FFMTCN 93
E ++ + TIGR S R D+ + S F+SR H + + + +
Sbjct: 24 EVLLTETFYTIGR-SPRADIRIK---SQFVSRIHAVLVRKSSDDVQAAYRIIDGDEDGQS 79
Query: 94 GKNGVFVDGNSI-RHNL 109
NG+ ++G + H +
Sbjct: 80 SVNGLMINGKKVQEHII 96
>2lso_A Histone H1X; structural genomics, northeast structural genomics
consortiu PSI-biology, protein structure initiative,
nuclear protein; NMR {Homo sapiens}
Length = 83
Score = 28.2 bits (63), Expect = 1.1
Identities = 9/37 (24%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 291 PPYSYAQLIVQAVASAHDKQ-LTLSGIYSFITKNYPY 326
P Y+QL+V+ + ++ +L+ IY+ K +
Sbjct: 4 QPGKYSQLVVETIRRLGERNGSSLAKIYTEAKKVPWF 40
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 2.9
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 5/22 (22%)
Query: 281 SLSISQDDSKPPYSYAQLIVQA 302
SL + DDS P A L ++A
Sbjct: 28 SLKLYADDSAP----A-LAIKA 44
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain,
forkhead-associated domai domain, PRE-mRNA retention and
splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Length = 205
Score = 28.0 bits (61), Expect = 4.6
Identities = 14/107 (13%), Positives = 31/107 (28%), Gaps = 10/107 (9%)
Query: 8 NESDAWALLALKSTSPSPSKIQ-WKSGTAIAKLQGREFEYMVRQKRITIGRNSSRGDVDV 66
+ + L+ + + + L GRE + + D+
Sbjct: 74 RDRTMYELVIYRKNDKDKGPWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIV---VADI 130
Query: 67 NMGLSSFISRRHIEIFFEHPNFFMTC-----NGKNGVFVDGNSIRHN 108
+ S++H I F + + C + NG ++ I
Sbjct: 131 GIP-EETSSKQHCVIQFRNVRGILKCYVMDLDSSNGTCLNNVVIPGA 176
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 27.8 bits (61), Expect = 6.1
Identities = 25/108 (23%), Positives = 36/108 (33%), Gaps = 6/108 (5%)
Query: 189 PAPTGQSVSSSGVGVMGNPATSSLLPPLRINIPDHPHTEISSSPFPSPTGTISAANSCPT 248
S +G G M P SL P L I S SP + S +
Sbjct: 18 TQVNSSLTSPTGRGSMAAP---SLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVIS 74
Query: 249 SPRGLHNRRNVSADLHMAAHYAAAHTNVVNHMSLSISQDDSKPPYSYA 296
SP G H ++S ++ + + M+ S +D KPP
Sbjct: 75 SPMGPH---SMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLN 119
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP:
b.68.6.1
Length = 326
Score = 27.7 bits (62), Expect = 6.3
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 123 EEPGKGSFWRIDPGSEHKLIE 143
E G GS + + G KL
Sbjct: 156 AETGAGSIYHVAKGKVTKLFA 176
>4fww_A Macrophage-stimulating protein receptor; beta-propeller,
cysteine-knot, receptor tyrosine kinase, MAC stimulating
protein, N-glycosylation; HET: NAG BMA; 1.85A {Homo
sapiens}
Length = 527
Score = 27.7 bits (60), Expect = 7.1
Identities = 16/111 (14%), Positives = 36/111 (32%)
Query: 219 NIPDHPHTEISSSPFPSPTGTISAANSCPTSPRGLHNRRNVSADLHMAAHYAAAHTNVVN 278
S + + P R + ++ ++A+ AA +
Sbjct: 112 TAVHLAAPACLFSAHHNRPDDCPDCVASPLGTRVTVVEQGQASYFYVASSLDAAVAASFS 171
Query: 279 HMSLSISQDDSKPPYSYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRT 329
S+SI + + + +V H ++ ++SF T + Y+ T
Sbjct: 172 PRSVSIRRLKADASGFAPGFVALSVLPKHLVSYSIEYVHSFHTGAFVYFLT 222
>1xzz_A Inositol 1,4,5-trisphosphate receptor type 1; IP3 receptor, IP3
receptor suppressor domain, calcium channe trefoil fold,
membrane protein; 1.80A {Mus musculus} PDB: 3jrr_A
Length = 246
Score = 27.1 bits (59), Expect = 9.3
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 14/63 (22%)
Query: 80 EIFFEHP--NFFMTCNGKNGVFVDGNSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPGS 137
I H N ++T N + ++ N++R L E +GS++ I P
Sbjct: 135 VIQLLHLKSNKYLTVNKRLPALLEKNAMRVTL------------DEAGNEGSWFYIQPFY 182
Query: 138 EHK 140
+ +
Sbjct: 183 KLR 185
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.131 0.396
Gapped
Lambda K H
0.267 0.0413 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,195,914
Number of extensions: 300482
Number of successful extensions: 752
Number of sequences better than 10.0: 1
Number of HSP's gapped: 725
Number of HSP's successfully gapped: 59
Length of query: 349
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 255
Effective length of database: 4,077,219
Effective search space: 1039690845
Effective search space used: 1039690845
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)