RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7734
(349 letters)
>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 80.3 bits (198), Expect = 1e-19
Identities = 46/51 (90%), Positives = 47/51 (92%)
Query: 102 GNSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPGSEHKLIEQAFRRRRQR 152
NSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDP SE KLIEQAFR+RR R
Sbjct: 48 QNSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPASESKLIEQAFRKRRPR 98
Score = 76.4 bits (188), Expect = 4e-18
Identities = 41/48 (85%), Positives = 44/48 (91%)
Query: 288 DSKPPYSYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRTADKGWQ 335
DSKPPYSYAQLIVQA+ A DKQLTL+GIY+ ITKNYPYYRTADKGWQ
Sbjct: 1 DSKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQ 48
>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 97
Score = 77.2 bits (190), Expect = 2e-18
Identities = 28/51 (54%), Positives = 35/51 (68%)
Query: 102 GNSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPGSEHKLIEQAFRRRRQR 152
NSIRHNLSLN F+K+PR PGKG++W +DP SE +F RRR+R
Sbjct: 47 QNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKR 97
Score = 73.8 bits (181), Expect = 4e-17
Identities = 24/46 (52%), Positives = 29/46 (63%)
Query: 290 KPPYSYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRTADKGWQ 335
KPPYSY LI A+ + K+LTLSGI FI+ +PYYR WQ
Sbjct: 2 KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQ 47
>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12,
fkh-14) {Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 72.9 bits (179), Expect = 5e-17
Identities = 24/46 (52%), Positives = 33/46 (71%)
Query: 290 KPPYSYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRTADKGWQ 335
KPPYSY LI A+ +A +K++TL+GIY FI +P+YR +GWQ
Sbjct: 4 KPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQ 49
Score = 63.3 bits (154), Expect = 2e-13
Identities = 25/44 (56%), Positives = 32/44 (72%)
Query: 103 NSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPGSEHKLIEQAF 146
NSIRHNLSLN F+KVPR ++PGKGS+W +DP S + +F
Sbjct: 50 NSIRHNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF 93
>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 70.6 bits (173), Expect = 3e-16
Identities = 20/46 (43%), Positives = 32/46 (69%)
Query: 290 KPPYSYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRTADKGWQ 335
+PP++YA LI QA+ + D+QLTL+ IYS+ T+ + Y+R W+
Sbjct: 2 RPPFTYATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWK 47
Score = 50.6 bits (121), Expect = 5e-09
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 13/49 (26%)
Query: 102 GNSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPGSEHKLIEQAFRRRR 150
N++RHNLSL++ F++V KG+ W +D +++RR
Sbjct: 47 KNAVRHNLSLHKCFVRVEN-----VKGAVWTVDE--------VEYQKRR 82
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 75
Score = 63.4 bits (154), Expect = 1e-13
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 295 YAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYRTADKGWQVN 337
Y LI A+ + +LTL+ I ++ +P++R + GW+ +
Sbjct: 1 YIALITMAIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNS 43
Score = 53.4 bits (128), Expect = 4e-10
Identities = 18/34 (52%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 103 NSIRHNLSLNRYFIKVPRSQEEP-GKGSFWRIDP 135
NS+RHNLSLN F+KV R P GK ++W ++P
Sbjct: 42 NSVRHNLSLNDCFVKVLRDPSRPWGKDNYWMLNP 75
>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 63.4 bits (154), Expect = 1e-13
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 5/55 (9%)
Query: 288 DSKPPYSYAQLIVQAVASAHDKQLTLSGIYSFITKNYPYYR-----TADKGWQVN 337
++ SYA+LI QA+ SA +K+LTL+ IY ++ + PY++ + GW+ +
Sbjct: 3 NAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNS 57
Score = 50.3 bits (120), Expect = 6e-09
Identities = 18/33 (54%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 102 GNSIRHNLSLNRYFIKVPRSQEEPGKGSFWRID 134
NSIRHNLSL+ FIKV E GK S+W ++
Sbjct: 55 KNSIRHNLSLHSKFIKVHN--EATGKSSWWMLN 85
>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 118
Score = 41.1 bits (96), Expect = 2e-05
Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Query: 39 LQGREFEYMVRQKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEHPNFFMT-CNGKNG 97
+G +Y I +GR ++ + + IS +H+ I + N+ + NG
Sbjct: 22 REGDALDYK-PGSTIRVGRIVRGNEIAIK---DAGISTKHLRIESDSGNWVIQDLGSSNG 77
Query: 98 VFVDGNSIRHN 108
++ N++
Sbjct: 78 TLLNSNALDPE 88
>d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR,
C-terminal domain {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 99
Score = 34.6 bits (79), Expect = 0.003
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Query: 40 QGREFEYMVRQKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEHPNFFMTCNG-KNGV 98
GR + ++ IGR D+ ++ S+ +SR H I N+ + NGV
Sbjct: 14 SGRGYP--LQAAATRIGR-LHDNDIVLD---SANVSRHHAVIVDTGTNYVINDLRSSNGV 67
Query: 99 FVDGNSIRHNLSLN 112
V IR ++LN
Sbjct: 68 HVQHERIRSAVTLN 81
>d2piea1 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 127
Score = 31.7 bits (71), Expect = 0.042
Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 2/71 (2%)
Query: 40 QGREFEYMVRQKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEHPNFF--MTCNGKNG 97
+ + +T+GR V+ ISR H + + M NG
Sbjct: 13 MSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKSLNG 72
Query: 98 VFVDGNSIRHN 108
V+++ +
Sbjct: 73 VWLNRARLEPL 83
>d2affa1 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 98
Score = 30.4 bits (68), Expect = 0.073
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 7/73 (9%)
Query: 41 GREFEYMVRQKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFEHPNFFMTCNGK-NGVF 99
G F + GR + D+ + +S++H +I + N
Sbjct: 15 GPHFP--LSLSTCLFGRGI---ECDIRIQ-LPVVSKQHCKIEIHEQEAILHNFSSTNPTQ 68
Query: 100 VDGNSIRHNLSLN 112
V+G+ I + L
Sbjct: 69 VNGSVIDEPVRLK 81
>d1mzka_ b.26.1.2 (A:) Kinase associated protein phosphatase {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 122
Score = 27.8 bits (61), Expect = 0.90
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 7/61 (11%)
Query: 50 QKRITIGRNSSRGDVDVNMGLSSFISRRHIEIFFE---HPNFFMTCNGKNGVFVDGNSIR 106
+ + +GR S D+ + S +S +H +I + + NG V+ +SI
Sbjct: 29 KLPVKLGRVSP-SDLALK---DSEVSGKHAQITWNSTKFKWELVDMGSLNGTLVNSHSIS 84
Query: 107 H 107
H
Sbjct: 85 H 85
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 27.8 bits (60), Expect = 2.3
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 8 NESDAWALLALKSTSPSPSKIQ-WKSGT 34
N D ALL +K +P+ + W T
Sbjct: 4 NPQDKQALLQIKKDLGNPTTLSSWLPTT 31
>d1lnla2 b.112.1.1 (A:305-405) C-terminal domain of mollusc
hemocyanin {Mollusca (Rapana thomasiana) [TaxId: 29165]}
Length = 101
Score = 25.7 bits (57), Expect = 3.7
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 216 LRINIPDHPHTEISSSPFPSPT 237
++I + +IS+ FP P+
Sbjct: 74 IKITQTSWDNEDISTDRFPPPS 95
>d1js8a2 b.112.1.1 (A:2792-2892) C-terminal domain of mollusc
hemocyanin {Giant octopus (Octopus dofleini) [TaxId:
267067]}
Length = 101
Score = 25.7 bits (57), Expect = 3.8
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 216 LRINIPDHPHTEISSSPFPSPT 237
+++ I +S+ PT
Sbjct: 74 IKVTIKGIDGHVLSNKYLSPPT 95
>d2brfa1 b.26.1.2 (A:8-108) Polynucleotide kinase 3'-phosphatase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 25.6 bits (55), Expect = 4.2
Identities = 6/50 (12%), Positives = 13/50 (26%), Gaps = 2/50 (4%)
Query: 61 RGDVDVNMGLSSFISRRHIEIFFEHPNFFMT--CNGKNGVFVDGNSIRHN 108
G + SR +E+ + + G N ++
Sbjct: 26 LGRGPLTQVTDRKCSRTQVELVADPETRTVAVKQLGVNPSTTGTQELKPG 75
>d1mg7a1 d.14.1.6 (A:14-187) Early switch protein XOL-1, N-terminal
domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Length = 174
Score = 26.1 bits (57), Expect = 4.3
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 287 DDSKPPYSYAQLIVQAVASAHDKQLTLSGIYSFI 320
+P S +I AHD Q TLS + FI
Sbjct: 63 LAREPKSSNEHMIDDLPKHAHD-QHTLSILRDFI 95
>d1afwa1 c.95.1.1 (A:25-293) Thiolase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 269
Score = 25.6 bits (55), Expect = 8.3
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 233 FPSPTGTISAANSCPTS 249
F GT +A N+ S
Sbjct: 237 FIKDRGTTTAGNASQVS 253
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.131 0.396
Gapped
Lambda K H
0.267 0.0606 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,261,767
Number of extensions: 56597
Number of successful extensions: 134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 24
Length of query: 349
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 263
Effective length of database: 1,226,816
Effective search space: 322652608
Effective search space used: 322652608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.5 bits)