BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7735
(120 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QZU|A Chain A, Crystal Structure Of Human Phosphopantothenoylcysteine
Decarboxylase
pdb|1QZU|B Chain B, Crystal Structure Of Human Phosphopantothenoylcysteine
Decarboxylase
pdb|1QZU|C Chain C, Crystal Structure Of Human Phosphopantothenoylcysteine
Decarboxylase
pdb|1QZU|D Chain D, Crystal Structure Of Human Phosphopantothenoylcysteine
Decarboxylase
Length = 206
Score = 125 bits (314), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 53/74 (71%), Positives = 63/74 (85%)
Query: 2 GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMC 61
G+CDNLLTC++RAWD SKP+LFCPAMNT MW HPIT ++ LK++GY EIPCV+K L+C
Sbjct: 116 GICDNLLTCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVC 175
Query: 62 GDTGLGAMAEVDTI 75
GD GLGAMAEV TI
Sbjct: 176 GDEGLGAMAEVGTI 189
>pdb|1E20|A Chain A, The Fmn Binding Protein Athal3
Length = 209
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 52/74 (70%)
Query: 2 GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMC 61
GLCDNLLTCI+RAWD++KP+ PAMNT MWN+P T+ H+ +L G IP + K L C
Sbjct: 116 GLCDNLLTCIIRAWDYTKPLFVAPAMNTLMWNNPFTERHLLSLDELGITLIPPIKKRLAC 175
Query: 62 GDTGLGAMAEVDTI 75
GD G GAMAE I
Sbjct: 176 GDYGNGAMAEPSLI 189
>pdb|1MVL|A Chain A, Ppc Decarboxylase Mutant C175s
pdb|1MVN|A Chain A, Ppc Decarboxylase Mutant C175s Complexed With
Pantothenoylaminoethenethiol
Length = 209
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 51/74 (68%)
Query: 2 GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMC 61
GLCDNLLTCI+RAWD++KP+ PAMNT MWN+P T+ H+ +L G IP + K L
Sbjct: 116 GLCDNLLTCIIRAWDYTKPLFVAPAMNTLMWNNPFTERHLLSLDELGITLIPPIKKRLAS 175
Query: 62 GDTGLGAMAEVDTI 75
GD G GAMAE I
Sbjct: 176 GDYGNGAMAEPSLI 189
>pdb|3QJG|A Chain A, Epidermin Biosynthesis Protein Epid From Staphylococcus
Aureus
pdb|3QJG|B Chain B, Epidermin Biosynthesis Protein Epid From Staphylococcus
Aureus
pdb|3QJG|C Chain C, Epidermin Biosynthesis Protein Epid From Staphylococcus
Aureus
pdb|3QJG|D Chain D, Epidermin Biosynthesis Protein Epid From Staphylococcus
Aureus
pdb|3QJG|E Chain E, Epidermin Biosynthesis Protein Epid From Staphylococcus
Aureus
pdb|3QJG|F Chain F, Epidermin Biosynthesis Protein Epid From Staphylococcus
Aureus
pdb|3QJG|G Chain G, Epidermin Biosynthesis Protein Epid From Staphylococcus
Aureus
pdb|3QJG|H Chain H, Epidermin Biosynthesis Protein Epid From Staphylococcus
Aureus
pdb|3QJG|I Chain I, Epidermin Biosynthesis Protein Epid From Staphylococcus
Aureus
pdb|3QJG|J Chain J, Epidermin Biosynthesis Protein Epid From Staphylococcus
Aureus
pdb|3QJG|K Chain K, Epidermin Biosynthesis Protein Epid From Staphylococcus
Aureus
pdb|3QJG|L Chain L, Epidermin Biosynthesis Protein Epid From Staphylococcus
Aureus
Length = 175
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 2 GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPC 54
G+CDNLL I F K +F P MN +MW +P+T+++I LK +G P
Sbjct: 96 GICDNLLLTICHTA-FEKLSIF-PNMNLRMWENPVTQNNIRLLKDYGVSIYPA 146
>pdb|1G5Q|A Chain A, Epid H67n Complexed With Substrate Peptide Dsytc
pdb|1G5Q|D Chain D, Epid H67n Complexed With Substrate Peptide Dsytc
pdb|1G5Q|G Chain G, Epid H67n Complexed With Substrate Peptide Dsytc
pdb|1G5Q|L Chain L, Epid H67n Complexed With Substrate Peptide Dsytc
Length = 181
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 2 GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKS 46
G+CDNLLT + + K +F P MN +MW +P + +I+ LK+
Sbjct: 93 GICDNLLTTVCLTG-YQKLFIF-PNMNIRMWGNPFLQKNIDLLKN 135
>pdb|1G63|A Chain A, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|B Chain B, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|C Chain C, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|D Chain D, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|E Chain E, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|F Chain F, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|G Chain G, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|H Chain H, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|I Chain I, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|J Chain J, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|K Chain K, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|L Chain L, Peptidyl-Cysteine Decarboxylase Epid
Length = 181
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 2 GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKS 46
G+CDNLLT + + K +F P MN +MW +P + +I+ LK+
Sbjct: 93 GICDNLLTTVCLTG-YQKLFIF-PNMNIRMWGNPFLQKNIDLLKN 135
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 48 GYEEIPCVSKTLMCGDTGLGAMAEVDTIKYGFVPNTIRKSTEPQDPNNFVDNNAGITEYS 107
GY+ C +K + G+T L A I ++R PQD + F+D + YS
Sbjct: 178 GYKSYQCRTKHRLTGETRLSATKGRLVITEPV--GSVRPKVNPQDKHQFIDVELA-SSYS 234
Query: 108 L 108
L
Sbjct: 235 L 235
>pdb|1P3Y|1 Chain 1, Mrsd From Bacillus Sp. Hil-y85/54728
Length = 194
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 2 GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGY 49
G+ NL+ + A + +F P MN MWN + +I L+ G+
Sbjct: 101 GVAMNLVATTVLAHPHNT--IFFPNMNDLMWNKTVVSRNIEQLRKDGH 146
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,830,339
Number of Sequences: 62578
Number of extensions: 144621
Number of successful extensions: 249
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 244
Number of HSP's gapped (non-prelim): 8
length of query: 120
length of database: 14,973,337
effective HSP length: 82
effective length of query: 38
effective length of database: 9,841,941
effective search space: 373993758
effective search space used: 373993758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)