BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7735
(120 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8BZB2|COAC_MOUSE Phosphopantothenoylcysteine decarboxylase OS=Mus musculus GN=Ppcdc
PE=2 SV=1
Length = 204
Score = 126 bits (316), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 52/74 (70%), Positives = 63/74 (85%)
Query: 2 GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMC 61
G+CDNLLTC++RAWD +KP+LFCPAMNT MW HP+T + LK++GY EIPCVSK L+C
Sbjct: 114 GICDNLLTCVIRAWDLNKPLLFCPAMNTAMWEHPLTAQQVAQLKAFGYVEIPCVSKKLVC 173
Query: 62 GDTGLGAMAEVDTI 75
GD GLGAMAEV+TI
Sbjct: 174 GDQGLGAMAEVETI 187
>sp|Q96CD2|COAC_HUMAN Phosphopantothenoylcysteine decarboxylase OS=Homo sapiens GN=PPCDC
PE=1 SV=2
Length = 204
Score = 125 bits (314), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 53/74 (71%), Positives = 63/74 (85%)
Query: 2 GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMC 61
G+CDNLLTC++RAWD SKP+LFCPAMNT MW HPIT ++ LK++GY EIPCV+K L+C
Sbjct: 114 GICDNLLTCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVC 173
Query: 62 GDTGLGAMAEVDTI 75
GD GLGAMAEV TI
Sbjct: 174 GDEGLGAMAEVGTI 187
>sp|P94063|HAL3B_ARATH Probable phosphopantothenoylcysteine decarboxylase OS=Arabidopsis
thaliana GN=HAL3B PE=2 SV=2
Length = 201
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/74 (59%), Positives = 51/74 (68%)
Query: 2 GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMC 61
GLCDNLLTCI+RAWD+SKP+ PAMNT MWN+P T+ H+ L G IP + K L C
Sbjct: 108 GLCDNLLTCIVRAWDYSKPLFVAPAMNTLMWNNPFTERHLVLLDELGITLIPPIKKKLAC 167
Query: 62 GDTGLGAMAEVDTI 75
GD G GAMAE I
Sbjct: 168 GDYGNGAMAEPSLI 181
>sp|Q9SWE5|HAL3A_ARATH Phosphopantothenoylcysteine decarboxylase OS=Arabidopsis thaliana
GN=HAL3A PE=1 SV=1
Length = 209
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 52/74 (70%)
Query: 2 GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMC 61
GLCDNLLTCI+RAWD++KP+ PAMNT MWN+P T+ H+ +L G IP + K L C
Sbjct: 116 GLCDNLLTCIIRAWDYTKPLFVAPAMNTLMWNNPFTERHLLSLDELGITLIPPIKKRLAC 175
Query: 62 GDTGLGAMAEVDTI 75
GD G GAMAE I
Sbjct: 176 GDYGNGAMAEPSLI 189
>sp|Q54433|COAC_STRMU Probable phosphopantothenoylcysteine decarboxylase OS=Streptococcus
mutans serotype c (strain ATCC 700610 / UA159) GN=coaC
PE=3 SV=2
Length = 179
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 49/74 (66%)
Query: 2 GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMC 61
G DN++T + A P F PAMNTKM+ +PIT+S+I LK +GY+EI S L C
Sbjct: 98 GFADNIVTSVALALPLEVPKFFAPAMNTKMYENPITQSNIALLKKFGYKEIQPKSSVLAC 157
Query: 62 GDTGLGAMAEVDTI 75
GD G GA+A++DTI
Sbjct: 158 GDVGSGALADLDTI 171
>sp|Q9UTI7|TYSY_SCHPO Probable thymidylate synthase OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC15E1.04 PE=3 SV=1
Length = 625
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 64/118 (54%), Gaps = 15/118 (12%)
Query: 2 GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSW--GYEEIPCVSKTL 59
GLCDNLLT ++RAW KPIL PAMNT MW +PIT+ H++ + E I + K L
Sbjct: 130 GLCDNLLTSLIRAWAPLKPILLAPAMNTLMWTNPITQEHLSAISRIYKNSEFIMPIEKVL 189
Query: 60 MCGDTGLGAMAEVDTI-----------KYGFVPNTIRKSTEPQDPNNFVDNNAGITEY 106
CGD G+G MAE I + +PN + K+ + QD ++ + A EY
Sbjct: 190 ACGDIGMGGMAEWRNIVGRVADKLQLEQKSVLPNAV-KNIDGQD-DDSSEQTAAFEEY 245
>sp|Q54Y51|COAC_DICDI Putative phosphopantothenoylcysteine decarboxylase OS=Dictyostelium
discoideum GN=ppcdc PE=3 SV=1
Length = 197
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Query: 2 GLCDNLLTCILRAWDF-SKPILFCPAMNTKMWNHPITKSHINTLKSWGYEE--IPCVSKT 58
GLCDNLLT ++RAWD+ +K ++ PAMNT MW +P T HI TLKS I + K
Sbjct: 112 GLCDNLLTSLIRAWDYKNKSMILAPAMNTMMWENPFTFKHIETLKSISPNVFIIDPIEKK 171
Query: 59 LMCGDTGLGAMAEVDTI 75
L CGD G+GAM +V I
Sbjct: 172 LFCGDIGMGAMEQVPKI 188
>sp|P36076|CAB3_YEAST Coenzyme A biosynthesis protein 3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CAB3 PE=1 SV=1
Length = 571
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 36/96 (37%), Positives = 59/96 (61%), Gaps = 8/96 (8%)
Query: 2 GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTL-KSWGYEEI-PCVSKTL 59
G+C+NLLT ++R W P+L PAMNT M+ +P+TK H+ +L + + + ++ V K L
Sbjct: 417 GICNNLLTSVMRDWSPLTPVLIAPAMNTFMYINPMTKKHLTSLVQDYPFIQVLKPVEKVL 476
Query: 60 MCGDTGLGAMAE----VDTIKYGFVPNTIRKSTEPQ 91
+CGD G+G M E V+ ++ N IRK+ + +
Sbjct: 477 ICGDIGMGGMREWTDIVEIVRRRI--NEIRKARDEE 510
>sp|P36024|SIS2_YEAST Phosphopantothenoylcysteine decarboxylase subunit SIS2
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SIS2 PE=1 SV=1
Length = 562
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 1 MGLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLK---SWGYEEIPCVSK 57
+GLCDNLLT ++RAW+ S PIL P+M + +N +TK + T+K SW P
Sbjct: 403 LGLCDNLLTSVIRAWNPSYPILLAPSMVSSTFNSMMTKKQLQTIKEEMSWVTVFKPSEKV 462
Query: 58 TLMCGDTGLGAMAEVDTI 75
+ GD GLG M + + I
Sbjct: 463 MDINGDIGLGGMMDWNEI 480
>sp|Q08438|VHS3_YEAST Phosphopantothenoylcysteine decarboxylase subunit VHS3
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=VHS3 PE=1 SV=1
Length = 674
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 11/82 (13%)
Query: 1 MGLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCV----- 55
+GLCDNLLT ++RAW+ + PI P+M + +N +TK H ++ EE+P V
Sbjct: 484 LGLCDNLLTSVIRAWNPTFPIFLAPSMGSGTFNSIMTKKHFRIIQ----EEMPWVTVFKP 539
Query: 56 SKTLMC--GDTGLGAMAEVDTI 75
S+ +M GD GL M + + I
Sbjct: 540 SEKVMGINGDIGLSGMMDANEI 561
>sp|P44953|COABC_HAEIN Coenzyme A biosynthesis bifunctional protein CoaBC OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=coaBC PE=3 SV=1
Length = 400
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 1 MGLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLM 60
+G+ ++LL+ I A + PI PAMN +M++ IT+ ++ TL++ G E I S
Sbjct: 100 IGMANDLLSTICLATN--APIFLAPAMNQQMYHQSITQQNLTTLQTRGIELIGPNSGFQA 157
Query: 61 CGDTGLGAMAEVDTI 75
CGD G G M+E + I
Sbjct: 158 CGDMGKGRMSEPEEI 172
>sp|Q12600|SIS2_CANTR Protein SIS2 OS=Candida tropicalis GN=SIS2 PE=3 SV=1
Length = 531
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 1 MGLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKS---WGYEEIPCVSK 57
+G+CDNLLT ++RAW+ S PIL PAM++ ++ TK + + W E + + K
Sbjct: 373 LGICDNLLTNVIRAWNSSYPILLAPAMDSHSYSSSTTKRQLRLIADDMPW-IEVLKPLEK 431
Query: 58 TLMC-GDTGLGAMAEVDTI 75
GD G+G M + + I
Sbjct: 432 VFGSYGDIGMGGMTDWNEI 450
>sp|P67733|COABC_MYCTU Coenzyme A biosynthesis bifunctional protein CoaBC OS=Mycobacterium
tuberculosis GN=coaBC PE=3 SV=1
Length = 418
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 18/100 (18%)
Query: 20 PILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTI---- 75
P+LF PAM+T+MW HP T ++ TL+ G + + L D+G G + E + I
Sbjct: 118 PVLFAPAMHTEMWLHPATVDNVATLRRRGAVVLEPATGRLTGADSGAGRLPEAEEITTLA 177
Query: 76 -----KYGFVPNTI--RK-------STEPQDPNNFVDNNA 101
++ +P + RK + EP DP F+ N +
Sbjct: 178 QLLLERHDALPYDLAGRKLLVTAGGTREPIDPVRFIGNRS 217
>sp|P67734|COABC_MYCBO Coenzyme A biosynthesis bifunctional protein CoaBC OS=Mycobacterium
bovis (strain ATCC BAA-935 / AF2122/97) GN=coaBC PE=3
SV=1
Length = 418
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 18/100 (18%)
Query: 20 PILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTI---- 75
P+LF PAM+T+MW HP T ++ TL+ G + + L D+G G + E + I
Sbjct: 118 PVLFAPAMHTEMWLHPATVDNVATLRRRGAVVLEPATGRLTGADSGAGRLPEAEEITTLA 177
Query: 76 -----KYGFVPNTI--RK-------STEPQDPNNFVDNNA 101
++ +P + RK + EP DP F+ N +
Sbjct: 178 QLLLERHDALPYDLAGRKLLVTAGGTREPIDPVRFIGNRS 217
>sp|O51752|COABC_BORBU Coenzyme A biosynthesis bifunctional protein CoaBC OS=Borrelia
burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM
4680) GN=coaBC PE=3 SV=1
Length = 390
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 2 GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMC 61
G+ D+ LT I+ A + P F AMN M+++PI K +I LK++ Y+ I L C
Sbjct: 99 GIADDALTTIISA--STAPTYFAIAMNNIMYSNPILKENIKKLKTYNYKFIEPDKGFLAC 156
Query: 62 GDTGLGAMAEVDTI 75
LG + D I
Sbjct: 157 SSNALGRLKNEDKI 170
>sp|O35033|COABC_BACSU Probable coenzyme A biosynthesis bifunctional protein CoaBC
OS=Bacillus subtilis (strain 168) GN=coaBC PE=3 SV=1
Length = 406
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 28/56 (50%)
Query: 20 PILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTI 75
P+ PAMN M++HP K +I+ L GY I L CG G G + E + I
Sbjct: 116 PVWIAPAMNVHMYDHPAVKRNISVLYQDGYCFIEPSEGYLACGYVGKGRLEEPENI 171
>sp|Q5E8M6|COABC_VIBF1 Coenzyme A biosynthesis bifunctional protein CoaBC OS=Vibrio
fischeri (strain ATCC 700601 / ES114) GN=coaBC PE=3 SV=1
Length = 409
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 2 GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMC 61
G+ ++LL+ ++ A D P+ PAMN +M+++ T+ +I TL G + C
Sbjct: 102 GMGNDLLSTLVLATD--SPVAVSPAMNQQMYSNIATQENIATLARRGMHIWGPAAGQQAC 159
Query: 62 GDTGLGAMAE 71
GD G+G M E
Sbjct: 160 GDVGMGRMLE 169
>sp|P0ABQ0|COABC_ECOLI Coenzyme A biosynthesis bifunctional protein CoaBC OS=Escherichia
coli (strain K12) GN=coaBC PE=1 SV=2
Length = 406
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 26/119 (21%)
Query: 2 GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKS-----WGYEEIPCVS 56
G+ ++L++ I A P+ PAMN +M+ T+ ++ L S WG + S
Sbjct: 101 GMANDLVSTICLA--TPAPVAVLPAMNQQMYRAAATQHNLEVLASRGLLIWGPD-----S 153
Query: 57 KTLMCGDTGLGAMAE--------------VDTIKYGFVPNTIRKSTEPQDPNNFVDNNA 101
+ CGD G G M + V+ +K+ + T + EP DP ++ N++
Sbjct: 154 GSQACGDIGPGRMLDPLTIVDMAVAHFSPVNDLKHLNIMITAGPTREPLDPVRYISNHS 212
>sp|P0ABQ1|COABC_ECOL6 Coenzyme A biosynthesis bifunctional protein CoaBC OS=Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=coaBC
PE=3 SV=2
Length = 406
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 26/119 (21%)
Query: 2 GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKS-----WGYEEIPCVS 56
G+ ++L++ I A P+ PAMN +M+ T+ ++ L S WG + S
Sbjct: 101 GMANDLVSTICLA--TPAPVAVLPAMNQQMYRAAATQHNLEVLASRGLLIWGPD-----S 153
Query: 57 KTLMCGDTGLGAMAE--------------VDTIKYGFVPNTIRKSTEPQDPNNFVDNNA 101
+ CGD G G M + V+ +K+ + T + EP DP ++ N++
Sbjct: 154 GSQACGDIGPGRMLDPLTIVDMAVAHFSPVNDLKHLNIMITAGPTREPLDPVRYISNHS 212
>sp|P73881|COABC_SYNY3 Coenzyme A biosynthesis bifunctional protein CoaBC OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=coaBC PE=3 SV=1
Length = 402
Score = 36.2 bits (82), Expect = 0.067, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 2 GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINT-LKSWGYEEIPCVSKTLM 60
G D+LL+ + A S PIL PAMNT MW + ++ L Y + L
Sbjct: 101 GFADDLLSNTVLA--SSCPILLAPAMNTDMWEQEAVQRNLQQLLGDRRYHLLAPNGGLLA 158
Query: 61 CGDTGLGAMAE 71
C G+G +AE
Sbjct: 159 CDRRGVGRLAE 169
>sp|P30197|EPID_STAEP Epidermin decarboxylase OS=Staphylococcus epidermidis GN=epiD PE=1
SV=1
Length = 181
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 2 GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKS 46
G+CDNLLT + + K +F P MN +MW +P + +I+ LK+
Sbjct: 93 GICDNLLTTVCLTG-YQKLFIF-PNMNIRMWGNPFLQKNIDLLKN 135
>sp|Q84X17|FB112_ARATH F-box protein At2g17830 OS=Arabidopsis thaliana GN=At2g17830 PE=2
SV=2
Length = 394
Score = 32.3 bits (72), Expect = 0.88, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 4 CDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEE 51
CD LL CI + +F + +++ P W P HI + + GY+E
Sbjct: 113 CDGLLLCITKDLNF-RLVVWNPYFGQTRWIQPRNSYHIKDIYAIGYDE 159
>sp|Q58323|COABC_METJA Coenzyme A biosynthesis bifunctional protein CoaBC
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=coaBC
PE=3 SV=1
Length = 403
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 1 MGLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLK 45
+G+ DN++ + +KPI PAM+ M+N K HI+ LK
Sbjct: 112 LGIADNIVNTTALMFFGNKPIFIVPAMHENMFN--AIKRHIDKLK 154
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,869,040
Number of Sequences: 539616
Number of extensions: 1748499
Number of successful extensions: 3289
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 3266
Number of HSP's gapped (non-prelim): 26
length of query: 120
length of database: 191,569,459
effective HSP length: 87
effective length of query: 33
effective length of database: 144,622,867
effective search space: 4772554611
effective search space used: 4772554611
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)