Query psy7735
Match_columns 120
No_of_seqs 145 out of 1102
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 17:27:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7735.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7735hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13982 bifunctional SbtC-lik 100.0 1.4E-43 3.1E-48 299.0 11.5 113 1-115 165-295 (475)
2 PRK05579 bifunctional phosphop 100.0 4.6E-42 1E-46 284.6 11.4 113 1-115 101-227 (399)
3 TIGR00521 coaBC_dfp phosphopan 100.0 2.2E-39 4.8E-44 268.1 11.1 113 1-115 97-224 (390)
4 COG0452 Dfp Phosphopantothenoy 100.0 9.8E-33 2.1E-37 228.6 9.4 111 1-115 98-222 (392)
5 TIGR02113 coaC_strep phosphopa 100.0 5.6E-31 1.2E-35 197.9 8.8 82 1-82 95-176 (177)
6 PLN02496 probable phosphopanto 100.0 9.9E-30 2.1E-34 196.0 8.4 83 1-83 115-197 (209)
7 PRK07313 phosphopantothenoylcy 100.0 1.3E-28 2.7E-33 185.8 8.9 84 1-84 96-179 (182)
8 KOG0672|consensus 99.9 5.3E-26 1.1E-30 173.0 5.2 83 1-83 121-205 (218)
9 PRK06029 3-octaprenyl-4-hydrox 99.6 5.4E-15 1.2E-19 112.2 7.3 72 1-82 97-169 (185)
10 TIGR00421 ubiX_pad polyprenyl 99.5 1.8E-14 3.9E-19 108.7 7.4 71 1-81 94-165 (181)
11 PRK08305 spoVFB dipicolinate s 99.5 3.2E-14 6.9E-19 109.0 6.5 78 1-85 103-184 (196)
12 PF04127 DFP: DNA / pantothena 99.5 1.6E-14 3.4E-19 109.4 2.7 33 83-115 9-42 (185)
13 PRK05920 aromatic acid decarbo 99.5 1.5E-13 3.2E-18 105.8 7.7 71 1-81 112-183 (204)
14 TIGR02852 spore_dpaB dipicolin 99.4 3.9E-13 8.3E-18 102.3 6.3 79 1-86 98-180 (187)
15 PRK09620 hypothetical protein; 99.4 3.5E-13 7.5E-18 104.9 3.4 34 82-115 8-42 (229)
16 PRK06732 phosphopantothenate-- 99.3 1.9E-12 4E-17 100.4 3.3 34 82-115 5-39 (229)
17 TIGR02114 coaB_strep phosphopa 99.2 4.7E-12 1E-16 98.1 3.4 34 82-115 4-38 (227)
18 TIGR02699 archaeo_AfpA archaeo 99.0 5.3E-10 1.1E-14 84.3 5.3 53 1-53 97-165 (174)
19 COG0163 UbiX 3-polyprenyl-4-hy 97.8 5.4E-05 1.2E-09 57.9 6.1 72 1-82 99-171 (191)
20 TIGR02536 eut_hyp ethanolamine 93.1 0.27 5.9E-06 38.1 5.6 55 1-55 72-135 (207)
21 COG1036 Archaeal flavoproteins 92.9 0.078 1.7E-06 40.3 2.2 52 1-52 107-174 (187)
22 TIGR02700 flavo_MJ0208 archaeo 92.4 0.12 2.6E-06 40.1 2.9 26 1-26 104-130 (234)
23 KOG2728|consensus 82.1 0.67 1.5E-05 37.6 1.1 33 82-114 36-71 (302)
24 PF07224 Chlorophyllase: Chlor 69.7 15 0.00033 30.2 5.8 91 19-112 46-141 (307)
25 COG1654 BirA Biotin operon rep 66.4 5.4 0.00012 26.4 2.2 19 34-52 33-51 (79)
26 PF13344 Hydrolase_6: Haloacid 64.1 5 0.00011 27.0 1.8 40 65-112 12-51 (101)
27 PF13528 Glyco_trans_1_3: Glyc 62.9 22 0.00047 27.5 5.4 38 10-52 262-299 (318)
28 PHA03073 late transcription fa 61.5 19 0.00042 26.7 4.5 42 5-49 84-129 (150)
29 COG1282 PntB NAD/NADP transhyd 57.9 18 0.0004 31.0 4.3 40 18-58 308-352 (463)
30 PRK11126 2-succinyl-6-hydroxy- 54.8 53 0.0011 23.8 6.0 82 19-110 3-85 (242)
31 PF14359 DUF4406: Domain of un 53.3 19 0.00042 24.2 3.2 46 31-83 12-57 (92)
32 PF02233 PNTB: NAD(P) transhyd 52.7 29 0.00063 30.2 4.9 62 18-79 307-380 (463)
33 COG5157 CDC73 RNA polymerase I 50.8 16 0.00035 30.2 2.8 72 18-97 204-283 (362)
34 PRK09444 pntB pyridine nucleot 47.0 43 0.00094 29.2 5.0 41 18-58 306-350 (462)
35 PF01022 HTH_5: Bacterial regu 46.7 24 0.00053 20.2 2.5 19 32-50 27-45 (47)
36 PLN00021 chlorophyllase 46.6 68 0.0015 25.9 5.9 83 29-112 60-147 (313)
37 PF07283 TrbH: Conjugal transf 45.7 50 0.0011 23.6 4.4 49 3-56 8-57 (121)
38 TIGR01456 CECR5 HAD-superfamil 45.7 16 0.00034 29.4 2.1 46 67-116 16-61 (321)
39 TIGR03695 menH_SHCHC 2-succiny 42.1 79 0.0017 22.0 5.1 83 19-110 2-89 (251)
40 PF02016 Peptidase_S66: LD-car 40.4 51 0.0011 26.2 4.2 30 22-53 3-32 (284)
41 PF07799 DUF1643: Protein of u 38.7 51 0.0011 23.0 3.6 36 15-50 8-47 (136)
42 PF02593 dTMP_synthase: Thymid 37.3 90 0.002 24.4 5.1 65 6-78 63-129 (217)
43 TIGR00122 birA_repr_reg BirA b 36.8 97 0.0021 18.9 4.3 23 34-56 27-49 (69)
44 PF06189 5-nucleotidase: 5'-nu 36.5 23 0.00049 28.7 1.6 20 32-51 195-214 (264)
45 TIGR03101 hydr2_PEP hydrolase, 36.3 84 0.0018 24.8 4.9 37 20-56 27-64 (266)
46 PF14094 DUF4272: Domain of un 35.3 42 0.00092 25.8 2.9 38 38-81 3-43 (209)
47 COG1509 KamA Lysine 2,3-aminom 35.2 86 0.0019 26.6 4.9 35 18-52 219-253 (369)
48 cd07062 Peptidase_S66_mccF_lik 34.9 49 0.0011 26.5 3.4 32 22-53 5-36 (308)
49 PF10503 Esterase_phd: Esteras 34.8 1.4E+02 0.003 23.1 5.7 90 18-111 15-117 (220)
50 KOG1696|consensus 34.7 63 0.0014 24.8 3.7 47 7-56 10-56 (193)
51 PLN02824 hydrolase, alpha/beta 34.4 1.3E+02 0.0028 22.8 5.6 34 18-55 29-62 (294)
52 COG4738 Predicted transcriptio 34.0 43 0.00093 24.1 2.5 46 31-82 52-104 (124)
53 smart00345 HTH_GNTR helix_turn 33.6 66 0.0014 18.2 3.0 23 33-55 33-55 (60)
54 PF01661 Macro: Macro domain; 32.9 98 0.0021 20.2 4.1 51 21-78 58-117 (118)
55 PF06258 Mito_fiss_Elm1: Mitoc 32.8 85 0.0018 25.5 4.4 40 8-51 239-278 (311)
56 COG3727 Vsr DNA G:T-mismatch r 32.6 44 0.00095 24.7 2.5 33 19-52 73-112 (150)
57 PLN02211 methyl indole-3-aceta 32.5 2.3E+02 0.005 21.7 7.0 85 19-110 19-106 (273)
58 PRK00870 haloalkane dehalogena 32.4 1.8E+02 0.0039 22.2 6.1 36 18-56 46-81 (302)
59 TIGR03343 biphenyl_bphD 2-hydr 32.4 2.1E+02 0.0045 21.2 7.5 38 16-55 28-67 (282)
60 TIGR01460 HAD-SF-IIA Haloacid 32.0 33 0.00072 26.1 1.9 23 93-115 32-54 (236)
61 PRK13835 conjugal transfer pro 31.8 1E+02 0.0022 22.8 4.3 46 3-53 42-87 (145)
62 PF08903 DUF1846: Domain of un 31.5 1.9E+02 0.0041 25.4 6.4 86 12-117 100-195 (491)
63 COG1810 Uncharacterized protei 31.3 2.6E+02 0.0056 22.2 6.7 65 5-78 66-132 (224)
64 TIGR02055 APS_reductase thiore 31.1 1.2E+02 0.0027 22.5 4.8 50 2-55 2-54 (191)
65 PF07368 DUF1487: Protein of u 30.5 59 0.0013 25.5 3.0 27 27-53 60-86 (215)
66 PF03730 Ku_C: Ku70/Ku80 C-ter 30.4 37 0.00079 22.5 1.7 21 26-46 4-24 (96)
67 TIGR00661 MJ1255 conserved hyp 28.6 1.2E+02 0.0025 23.9 4.5 39 9-52 258-296 (321)
68 PF12740 Chlorophyllase2: Chlo 28.6 81 0.0017 25.3 3.6 92 18-112 16-112 (259)
69 TIGR03821 AblA_like_1 lysine-2 28.6 1.6E+02 0.0035 23.8 5.5 35 18-52 203-237 (321)
70 COG3473 Maleate cis-trans isom 28.6 1.7E+02 0.0038 23.3 5.3 64 12-83 113-176 (238)
71 PF02754 CCG: Cysteine-rich do 28.2 96 0.0021 18.7 3.3 35 34-69 14-49 (85)
72 COG0707 MurG UDP-N-acetylgluco 28.1 1.1E+02 0.0024 25.4 4.4 52 17-83 271-322 (357)
73 PRK03592 haloalkane dehalogena 27.8 2.2E+02 0.0048 21.5 5.8 36 16-55 25-60 (295)
74 TIGR03378 glycerol3P_GlpB glyc 27.8 1.4E+02 0.003 25.6 5.1 50 2-53 231-282 (419)
75 PLN02679 hydrolase, alpha/beta 27.6 1.7E+02 0.0037 23.5 5.4 33 19-55 89-121 (360)
76 PRK10349 carboxylesterase BioH 27.6 2.5E+02 0.0054 20.6 7.4 81 15-111 9-94 (256)
77 PF06757 Ins_allergen_rp: Inse 26.9 60 0.0013 24.0 2.5 22 29-50 150-171 (179)
78 TIGR02427 protocat_pcaD 3-oxoa 26.7 2.2E+02 0.0048 19.7 6.4 85 18-111 12-99 (251)
79 PF12802 MarR_2: MarR family; 26.6 62 0.0013 18.9 2.1 25 32-56 33-57 (62)
80 PF00392 GntR: Bacterial regul 26.2 98 0.0021 18.6 3.0 25 33-57 37-61 (64)
81 cd07377 WHTH_GntR Winged helix 25.9 1.1E+02 0.0023 17.7 3.1 22 34-55 39-60 (66)
82 cd07025 Peptidase_S66 LD-Carbo 25.7 1.1E+02 0.0023 24.3 3.8 32 22-55 3-34 (282)
83 PRK01747 mnmC bifunctional tRN 25.3 63 0.0014 28.5 2.7 28 24-52 176-203 (662)
84 KOG3349|consensus 25.1 1.7E+02 0.0036 22.3 4.5 39 11-52 93-131 (170)
85 PF01726 LexA_DNA_bind: LexA D 25.0 1.1E+02 0.0024 19.1 3.1 22 34-55 40-61 (65)
86 COG2345 Predicted transcriptio 24.9 89 0.0019 24.5 3.1 31 33-70 38-68 (218)
87 TIGR01457 HAD-SF-IIA-hyp2 HAD- 24.2 48 0.001 25.5 1.5 21 92-112 34-54 (249)
88 PRK13663 hypothetical protein; 24.0 2.5E+02 0.0055 24.6 5.9 86 12-117 101-196 (493)
89 smart00775 LNS2 LNS2 domain. T 23.9 97 0.0021 22.3 3.1 21 32-52 27-47 (157)
90 PF13412 HTH_24: Winged helix- 23.6 1E+02 0.0022 17.4 2.5 18 33-50 30-47 (48)
91 PF14502 HTH_41: Helix-turn-he 23.3 1.1E+02 0.0023 18.5 2.6 20 36-55 22-41 (48)
92 COG2147 RPL19A Ribosomal prote 22.6 87 0.0019 23.3 2.5 40 18-58 19-58 (150)
93 PF02807 ATP-gua_PtransN: ATP: 22.4 78 0.0017 20.7 2.1 22 97-118 3-24 (76)
94 COG1104 NifS Cysteine sulfinat 22.2 3E+02 0.0065 23.5 6.0 62 4-81 73-140 (386)
95 PF13730 HTH_36: Helix-turn-he 22.0 82 0.0018 18.1 2.0 17 33-49 38-54 (55)
96 PRK09344 phosphoenolpyruvate c 21.6 2.8E+02 0.0062 24.6 5.9 98 18-116 384-508 (526)
97 PF08602 Mgr1: Mgr1-like, i-AA 21.5 91 0.002 26.4 2.7 28 87-114 170-209 (363)
98 TIGR03379 glycerol3P_GlpC glyc 21.4 1.9E+02 0.0041 23.6 4.6 46 19-65 162-207 (397)
99 COG3526 Uncharacterized protei 21.4 1.6E+02 0.0035 20.1 3.5 54 38-99 27-90 (99)
100 cd02010 TPP_ALS Thiamine pyrop 21.0 1E+02 0.0022 22.4 2.7 24 93-116 38-62 (177)
101 PLN03220 uncharacterized prote 20.8 1.3E+02 0.0029 21.0 3.1 28 19-49 52-80 (105)
102 COG0289 DapB Dihydrodipicolina 20.4 1.8E+02 0.0038 23.6 4.1 52 2-54 102-154 (266)
103 PRK00726 murG undecaprenyldiph 20.3 1.7E+02 0.0037 22.9 4.0 58 10-83 264-322 (357)
104 PTZ00187 succinyl-CoA syntheta 20.3 5E+02 0.011 21.4 8.2 21 93-114 171-191 (317)
105 PF08235 LNS2: LNS2 (Lipin/Ned 20.2 83 0.0018 23.3 2.1 28 24-52 20-47 (157)
106 PHA02857 monoglyceride lipase; 20.1 3.7E+02 0.0081 19.9 6.1 35 18-55 24-59 (276)
No 1
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=100.00 E-value=1.4e-43 Score=299.03 Aligned_cols=113 Identities=33% Similarity=0.501 Sum_probs=106.2
Q ss_pred CCCcchHHHHHHHhccCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCCCccc-cCCCCCCCCCChhhHHhcc
Q psy7735 1 MGLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLM-CGDTGLGAMAEVDTIKYGF 79 (120)
Q Consensus 1 ~GiaDnllt~~~~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~g~la-cg~~G~g~m~~~~~I~~~v 79 (120)
+|||||++++++++. ++|++|+|+||+.||+||++|+|+++|+++|++|++|..|.|| ||++|+||||+|++|++++
T Consensus 165 ~GiADnLlt~v~La~--~~PvliaPaMN~~M~~npat~~Nl~~L~~~G~~vi~P~~g~lA~~g~~G~Grm~e~~~I~~~v 242 (475)
T PRK13982 165 NGLADDLASAILLAA--NRPILLAPAMNPLMWNNPATRRNVAQLKRDGVHMIGPNAGEMAERGEAGVGRMAEPLEIAAAA 242 (475)
T ss_pred ccccCcHHHHHHHhc--CCCEEEEEcCCHHHhcCHHHHHHHHHHHHCCCEEECCCCCccccCCCcCCCCCCCHHHHHHHH
Confidence 699999999998886 8999999999999999999999999999999999999999999 7999999999999999988
Q ss_pred ccC----------------cCCCCccCCCcceeeecC-CcHHHHHHHHHHHHH
Q psy7735 80 VPN----------------TIRKSTEPQDPNNFVDNN-AGITEYSLTGFLYFS 115 (120)
Q Consensus 80 ~~~----------------~~~~t~E~iD~vR~isN~-SG~mg~~ia~~~~~~ 115 (120)
.+. ++|+|+|+|||||||||+ |||||++||++++.+
T Consensus 243 ~~~~~~~~~~~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~ 295 (475)
T PRK13982 243 EALLRPPQPKPLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAA 295 (475)
T ss_pred HHHHhhccccccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHC
Confidence 532 368999999999999999 799999999999874
No 2
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=100.00 E-value=4.6e-42 Score=284.62 Aligned_cols=113 Identities=39% Similarity=0.588 Sum_probs=106.9
Q ss_pred CCCcchHHHHHHHhccCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCCCccccCCCCCCCCCChhhHHhccc
Q psy7735 1 MGLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKYGFV 80 (120)
Q Consensus 1 ~GiaDnllt~~~~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~g~lacg~~G~g~m~~~~~I~~~v~ 80 (120)
+|||||+++++++++ ++|++++||||+.||.||++|+|+++|+++|++|++|..|.||||++|+||||+|++|++.+.
T Consensus 101 ~GiaDnllt~~~la~--~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~ii~P~~g~la~~~~g~gr~~~~~~I~~~~~ 178 (399)
T PRK05579 101 HGIADDLLTTTLLAT--TAPVLVAPAMNTQMWENPATQRNLATLRSRGVEIIGPASGRLACGDVGPGRMAEPEEIVAAAE 178 (399)
T ss_pred cccCCcHHHHHHHhc--CCCEEEEeCCChhHcCCHHHHHHHHHHHHCCCEEECCCCccccCCCcCCCCCCCHHHHHHHHH
Confidence 699999999998887 899999999999999999999999999999999999999999999999999999999999886
Q ss_pred cC-------------cCCCCccCCCcceeeecC-CcHHHHHHHHHHHHH
Q psy7735 81 PN-------------TIRKSTEPQDPNNFVDNN-AGITEYSLTGFLYFS 115 (120)
Q Consensus 81 ~~-------------~~~~t~E~iD~vR~isN~-SG~mg~~ia~~~~~~ 115 (120)
+. ++|+|+|+|||||||||+ ||+||++||++++.+
T Consensus 179 ~~~~~~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~ 227 (399)
T PRK05579 179 RALSPKDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARR 227 (399)
T ss_pred HHhhhcccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHC
Confidence 43 367999999999999999 699999999999874
No 3
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=100.00 E-value=2.2e-39 Score=268.07 Aligned_cols=113 Identities=36% Similarity=0.524 Sum_probs=106.1
Q ss_pred CCCcchHHHHHHHhccCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCCCccccCCCCCCCCCChhhHHhccc
Q psy7735 1 MGLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKYGFV 80 (120)
Q Consensus 1 ~GiaDnllt~~~~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~g~lacg~~G~g~m~~~~~I~~~v~ 80 (120)
+|||||++++++.+. .+|++++|+||+.||+||++++|+++|+++|++|++|..|.+|||++|+||||+|++|++.+.
T Consensus 97 ~GiaDnLlt~~~~~~--~~plviaPamn~~m~~~p~~~~Nl~~L~~~G~~vv~P~~g~~ac~~~g~g~~~~~~~i~~~v~ 174 (390)
T TIGR00521 97 HGIADDLVSTTALAA--SAPIILAPAMNENMYNNPAVQENIKRLKDDGYIFIEPDSGLLACGDEGKGRLAEPETIVKAAE 174 (390)
T ss_pred cccCCcHHHHHHHHh--CCCEEEEeCCChhhcCCHHHHHHHHHHHHCCcEEECCCCcccccccccCCCCCCHHHHHHHHH
Confidence 699999999998887 599999999999999999999999999999999999999999999999999999999999887
Q ss_pred cC--------------cCCCCccCCCcceeeecC-CcHHHHHHHHHHHHH
Q psy7735 81 PN--------------TIRKSTEPQDPNNFVDNN-AGITEYSLTGFLYFS 115 (120)
Q Consensus 81 ~~--------------~~~~t~E~iD~vR~isN~-SG~mg~~ia~~~~~~ 115 (120)
+. ++|+|+|+|||||||||+ ||+||++||++++.+
T Consensus 175 ~~~~~~~~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~ 224 (390)
T TIGR00521 175 REFSPKEDLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKR 224 (390)
T ss_pred HHHhhccccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHC
Confidence 43 367899999999999999 799999999999874
No 4
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=99.98 E-value=9.8e-33 Score=228.60 Aligned_cols=111 Identities=32% Similarity=0.439 Sum_probs=103.4
Q ss_pred CCCcchHHHHHHHhccCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCCCccccCCCCCCCCCChhhHHhccc
Q psy7735 1 MGLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKYGFV 80 (120)
Q Consensus 1 ~GiaDnllt~~~~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~g~lacg~~G~g~m~~~~~I~~~v~ 80 (120)
+|++||+++++++++ ..|++++||||+.||.||++|+|+++|+++|+.+|+|..|.++ +.|.|+|+++++|+..+.
T Consensus 98 ~g~aD~~~t~~~~a~--~~p~~~aPamn~~M~~~~~tq~n~~~l~~~g~~~I~p~~~~~a--~~g~g~~~e~~~Iv~~~~ 173 (392)
T COG0452 98 VGIADNLSTTTLLAA--KAPLVLAPAMNVIMYTHPATQENLQRLKSEGVLFIEPIEGELA--DVGDGRLAEPEEIVEAAL 173 (392)
T ss_pred HhhhccHHHHHHHHh--cCcEEEecCcCHHHhhCHHHHHHHHHHHHCCcEEECccccccc--ccccccCCCHHHHHHHHH
Confidence 599999999998887 5699999999999999999999999999999999999999999 999999999999999765
Q ss_pred cC-------------cCCCCccCCCcceeeecC-CcHHHHHHHHHHHHH
Q psy7735 81 PN-------------TIRKSTEPQDPNNFVDNN-AGITEYSLTGFLYFS 115 (120)
Q Consensus 81 ~~-------------~~~~t~E~iD~vR~isN~-SG~mg~~ia~~~~~~ 115 (120)
+. ++|+|+|+|||||||||+ |||||++||++++.+
T Consensus 174 ~~~~~~~l~gk~Vlit~G~t~E~idpvr~itn~ssGk~g~alA~a~~~~ 222 (392)
T COG0452 174 ALLKTPDLKGKKVLITAGPTREYIDPVRFISNRSSGKMGFALAAAAKRR 222 (392)
T ss_pred hhcccccccCcEEEecCCCCccCCccceeeeccccccccHHHHHHHHHc
Confidence 32 378999999999999999 799999999999875
No 5
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=99.97 E-value=5.6e-31 Score=197.91 Aligned_cols=82 Identities=41% Similarity=0.638 Sum_probs=78.7
Q ss_pred CCCcchHHHHHHHhccCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCCCccccCCCCCCCCCChhhHHhccc
Q psy7735 1 MGLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKYGFV 80 (120)
Q Consensus 1 ~GiaDnllt~~~~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~g~lacg~~G~g~m~~~~~I~~~v~ 80 (120)
+|||||++++++++++.++||+++|+||+.||+||++|+|+++|+++|+.|++|.+|.||||++|+||||+|++|++.+.
T Consensus 95 ~GiaDnLlt~~a~a~~~~~pv~i~PaMn~~M~~~p~~~~nl~~L~~~G~~vi~P~~g~la~g~~g~g~~~~~~~i~~~~~ 174 (177)
T TIGR02113 95 HGFADNIVTSVALALPPETPKLIAPAMNTKMYQNPITQRNIKILKKIGYQEIQPKESLLACGDYGRGALADLDDILQTIK 174 (177)
T ss_pred cCcCCcHHHHHHHHcCCCCCEEEEeCCCHHHhCCHHHHHHHHHHHHCCCEEECCCcCcccCCCccccCCCCHHHHHHHHH
Confidence 69999999999889988899999999999999999999999999999999999999999999999999999999999886
Q ss_pred cC
Q psy7735 81 PN 82 (120)
Q Consensus 81 ~~ 82 (120)
+.
T Consensus 175 ~~ 176 (177)
T TIGR02113 175 EI 176 (177)
T ss_pred Hh
Confidence 54
No 6
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=99.96 E-value=9.9e-30 Score=195.97 Aligned_cols=83 Identities=53% Similarity=0.894 Sum_probs=80.0
Q ss_pred CCCcchHHHHHHHhccCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCCCccccCCCCCCCCCChhhHHhccc
Q psy7735 1 MGLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKYGFV 80 (120)
Q Consensus 1 ~GiaDnllt~~~~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~g~lacg~~G~g~m~~~~~I~~~v~ 80 (120)
+|||||+++++++|++.++|++++|+||+.||+||+||+|+++|+++|++|++|.+|.||||++|.||||+|++|+..+.
T Consensus 115 ~GiaDnlltt~l~a~~~~~Pv~iaPaMN~~Mw~~Pat~~nl~~L~~~G~~vi~P~~g~lAcg~~G~Grm~ep~~I~~~i~ 194 (209)
T PLN02496 115 GGLCDNLLTCIVRAWDYSKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVTKRLACGDYGNGAMAEPSLIYSTVR 194 (209)
T ss_pred cccCCcHHHHHHHHcCCCCCEEEEeCCCHHHHhCHHHHHHHHHHHHCCCEEECCCcCcccCCCcCCCCCCCHHHHHHHHH
Confidence 69999999999999988999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCc
Q psy7735 81 PNT 83 (120)
Q Consensus 81 ~~~ 83 (120)
..+
T Consensus 195 ~~l 197 (209)
T PLN02496 195 LFL 197 (209)
T ss_pred HHH
Confidence 765
No 7
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=99.95 E-value=1.3e-28 Score=185.76 Aligned_cols=84 Identities=38% Similarity=0.587 Sum_probs=80.5
Q ss_pred CCCcchHHHHHHHhccCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCCCccccCCCCCCCCCChhhHHhccc
Q psy7735 1 MGLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKYGFV 80 (120)
Q Consensus 1 ~GiaDnllt~~~~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~g~lacg~~G~g~m~~~~~I~~~v~ 80 (120)
+|||||++++++.+++.++|++++|+||+.||.||++++|+++|+++|++|++|..|.||||++|+|||++|++|++.+.
T Consensus 96 ~GiaDnllt~~~~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi~p~~g~la~~~~g~g~~~~~~~i~~~v~ 175 (182)
T PRK07313 96 HGIADDLVTSVALALPATTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEIEPKEGLLACGDEGYGALADIETILETIE 175 (182)
T ss_pred ccccCcHHHHHHHHcCCCCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEECCCCCccccCCccCCCCCCHHHHHHHHH
Confidence 69999999999889988999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCcC
Q psy7735 81 PNTI 84 (120)
Q Consensus 81 ~~~~ 84 (120)
+.+.
T Consensus 176 ~~~~ 179 (182)
T PRK07313 176 NTLK 179 (182)
T ss_pred HHhc
Confidence 7664
No 8
>KOG0672|consensus
Probab=99.92 E-value=5.3e-26 Score=172.99 Aligned_cols=83 Identities=55% Similarity=0.895 Sum_probs=79.3
Q ss_pred CCCcchHHHHHHHhccCCCCEEEEecCChhhhhChHHHHHHHHHH--hCCcEEecCCCCccccCCCCCCCCCChhhHHhc
Q psy7735 1 MGLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLK--SWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKYG 78 (120)
Q Consensus 1 ~GiaDnllt~~~~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~--~~G~~vi~P~~g~lacg~~G~g~m~~~~~I~~~ 78 (120)
+|+||||+|++.+||+..+|++++||||+.||+||.|++++..|+ ..|+.++.|.++.|+|||+|.|.|++|.+|+..
T Consensus 121 ~GlCDNLLTsviRAW~~skPil~aPaMnT~mw~np~T~~hl~~l~~~~~~~~~i~pieK~licGDiGlG~Mae~~~IV~~ 200 (218)
T KOG0672|consen 121 NGLCDNLLTSVIRAWDPSKPILLAPAMNTLMWNNPMTKKHLTSLKEEYPGITVIKPIEKVLICGDIGLGGMAEWGTIVSK 200 (218)
T ss_pred hhhhhHHHHHHHHHhccCCceEeccchhhhhhcCcchHHHHHHHHHhcCCcEEecchheeEeccccCccccccHHHHHHH
Confidence 699999999999999999999999999999999999999999997 479999999999999999999999999999999
Q ss_pred cccCc
Q psy7735 79 FVPNT 83 (120)
Q Consensus 79 v~~~~ 83 (120)
|...+
T Consensus 201 V~~~~ 205 (218)
T KOG0672|consen 201 VRRKL 205 (218)
T ss_pred HHHHH
Confidence 97554
No 9
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=99.57 E-value=5.4e-15 Score=112.18 Aligned_cols=72 Identities=17% Similarity=0.142 Sum_probs=59.4
Q ss_pred CCCcchHHHHHH-HhccCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCCCccccCCCCCCCCCChhhHHhcc
Q psy7735 1 MGLCDNLLTCIL-RAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKYGF 79 (120)
Q Consensus 1 ~GiaDnllt~~~-~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~g~lacg~~G~g~m~~~~~I~~~v 79 (120)
+|||||++++++ .++..++|++++| ..||.||++|+|+++|+++|+.|++|..|.++ +.-+.+++++.+
T Consensus 97 ~GiaDnLlt~~a~~~L~~~~pvii~P---~~M~~~p~~~~Nl~~L~~~G~~vi~P~~g~~a-------~p~~~~~~~~~~ 166 (185)
T PRK06029 97 HGYSDNLITRAADVMLKERRRLVLCV---RETPLHLGHLRNMTKLAEMGAIIMPPVPAFYH-------RPQTLEDMVDQT 166 (185)
T ss_pred ccccCcHHHHHHHHHHhcCCCEEEEe---ccccCCHHHHHHHHHHHHCcCEEECCCccccc-------CCCCHHHHHHHH
Confidence 699999999753 3455689999999 47999999999999999999999999997664 444677777776
Q ss_pred ccC
Q psy7735 80 VPN 82 (120)
Q Consensus 80 ~~~ 82 (120)
...
T Consensus 167 v~~ 169 (185)
T PRK06029 167 VGR 169 (185)
T ss_pred HHH
Confidence 543
No 10
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=99.54 E-value=1.8e-14 Score=108.74 Aligned_cols=71 Identities=17% Similarity=0.147 Sum_probs=60.9
Q ss_pred CCCcchHHHHHH-HhccCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCCCccccCCCCCCCCCChhhHHhcc
Q psy7735 1 MGLCDNLLTCIL-RAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKYGF 79 (120)
Q Consensus 1 ~GiaDnllt~~~-~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~g~lacg~~G~g~m~~~~~I~~~v 79 (120)
+|||||++++++ .++..++|++|+| ..||.||++|+|+++|+++|+.|++|..|. .+++.+++++++.+
T Consensus 94 ~GiaD~Llt~~a~~~L~~~~pv~i~P---~~m~~~~~~~~Nl~~L~~~G~~ii~P~~g~-------~~~p~~~~~~~~~i 163 (181)
T TIGR00421 94 NGYADNLITRAADVCLKERRKLVLVP---RETPLNSIHLENMLRLSRMGAIILPPMPAF-------YTRPKSVEDMIDFI 163 (181)
T ss_pred cccCCCHHHHHHHHHHhcCCCEEEEe---CCCcCCHHHHHHHHHHHHCCCEEECCCCcc-------cCCCCCHHHHHHHH
Confidence 699999999873 3565699999999 599999999999999999999999999854 57788999977666
Q ss_pred cc
Q psy7735 80 VP 81 (120)
Q Consensus 80 ~~ 81 (120)
..
T Consensus 164 ~~ 165 (181)
T TIGR00421 164 VG 165 (181)
T ss_pred HH
Confidence 53
No 11
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=99.51 E-value=3.2e-14 Score=109.00 Aligned_cols=78 Identities=9% Similarity=0.027 Sum_probs=58.8
Q ss_pred CCCcchHHHHHHH-hccCCCCEEEEecCChhhhhChHHHHHHHHHH-hCCcEEecCCCCccccCCCCC--CCCCChhhHH
Q psy7735 1 MGLCDNLLTCILR-AWDFSKPILFCPAMNTKMWNHPITKSHINTLK-SWGYEEIPCVSKTLMCGDTGL--GAMAEVDTIK 76 (120)
Q Consensus 1 ~GiaDnllt~~~~-a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~-~~G~~vi~P~~g~lacg~~G~--g~m~~~~~I~ 76 (120)
+|||||++++++. +++.++|++++||||+.||+|| +|+++|+ ++|+++|+ .|.-.| .+| --..+|+.+.
T Consensus 103 ~GiaDnll~~aa~a~lke~~PvvlaPAMN~~M~~~~---~ni~~L~~~~g~~~i~--~~~~~~--~~~~~~~~~~~~~~~ 175 (196)
T PRK08305 103 NAITDSPVLMAAKATLRNQRPVVLAISTNDALGLNA---KNLGRLLNTKNIYFVP--FGQDDP--VKKPNSLVARMDLLI 175 (196)
T ss_pred ccccCcHHHHHHHHHhcCCCCEEEEECCCHHHHhCH---HHHHHHHhcCCEEEEe--cCCCCC--CCCchhHHhhHHhhH
Confidence 6999999998854 5788999999999999999996 9999998 59999883 222111 222 1245888888
Q ss_pred hccccCcCC
Q psy7735 77 YGFVPNTIR 85 (120)
Q Consensus 77 ~~v~~~~~~ 85 (120)
+.+..++-+
T Consensus 176 ~~~~~~~~~ 184 (196)
T PRK08305 176 DTVEEALEG 184 (196)
T ss_pred HHHHHHHhC
Confidence 877766543
No 12
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=99.48 E-value=1.6e-14 Score=109.44 Aligned_cols=33 Identities=27% Similarity=0.320 Sum_probs=29.3
Q ss_pred cCCCCccCCCcceeeecC-CcHHHHHHHHHHHHH
Q psy7735 83 TIRKSTEPQDPNNFVDNN-AGITEYSLTGFLYFS 115 (120)
Q Consensus 83 ~~~~t~E~iD~vR~isN~-SG~mg~~ia~~~~~~ 115 (120)
++|+|+|+|||||||||+ ||+||++||++++++
T Consensus 9 TaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~ 42 (185)
T PF04127_consen 9 TAGPTREPIDPVRFITNRSSGKMGAALAEEAARR 42 (185)
T ss_dssp EESB-EEESSSSEEEEES--SHHHHHHHHHHHHT
T ss_pred ECCCccccCCCceEecCCCcCHHHHHHHHHHHHC
Confidence 689999999999999999 799999999999874
No 13
>PRK05920 aromatic acid decarboxylase; Validated
Probab=99.47 E-value=1.5e-13 Score=105.79 Aligned_cols=71 Identities=17% Similarity=0.165 Sum_probs=58.7
Q ss_pred CCCcchHHHHHH-HhccCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCCCccccCCCCCCCCCChhhHHhcc
Q psy7735 1 MGLCDNLLTCIL-RAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKYGF 79 (120)
Q Consensus 1 ~GiaDnllt~~~-~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~g~lacg~~G~g~m~~~~~I~~~v 79 (120)
+|||||++++++ .++..++|++++|+ .||.||++|+|+++|+++|++|++|..|.+ +++-+.+++++.+
T Consensus 112 ~GiaD~ll~~~a~~~L~~~~pvvi~P~---~m~~~~~~~~nl~~L~~~G~~ii~P~~g~y-------~~p~~~~~~~~f~ 181 (204)
T PRK05920 112 HGLSDNLIERAADVVLKERRKLILVPR---ETPLSLIHLENMLKLAEAGAIILPAIPAFY-------HKPQTIDDLVDFV 181 (204)
T ss_pred ccccCcHHHHHHHHHHhcCCCEEEEeC---CCCCCHHHHHHHHHHHHCCCEEeCCccccc-------CCCCCHHHHHHHH
Confidence 699999999864 56666999999996 499999999999999999999999998652 4555667777766
Q ss_pred cc
Q psy7735 80 VP 81 (120)
Q Consensus 80 ~~ 81 (120)
..
T Consensus 182 ~~ 183 (204)
T PRK05920 182 VA 183 (204)
T ss_pred HH
Confidence 54
No 14
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=99.41 E-value=3.9e-13 Score=102.32 Aligned_cols=79 Identities=11% Similarity=0.022 Sum_probs=59.4
Q ss_pred CCCcchHHHHHHHhc-cCCCCEEEEecCChhhhhChHHHHHHHHHH-hCCcEEecCCCCccccCCCCCC--CCCChhhHH
Q psy7735 1 MGLCDNLLTCILRAW-DFSKPILFCPAMNTKMWNHPITKSHINTLK-SWGYEEIPCVSKTLMCGDTGLG--AMAEVDTIK 76 (120)
Q Consensus 1 ~GiaDnllt~~~~a~-~~~~PvliaPaMn~~M~~~P~~~~nl~~L~-~~G~~vi~P~~g~lacg~~G~g--~m~~~~~I~ 76 (120)
+||+||+++.++.++ +.++|++++|+||++||+|+ +|+++|. ++|++||+=- .=. ..+|- -.++++.|.
T Consensus 98 ~GiaDnlv~~aa~a~Lke~rPlvlaPamN~~m~~~~---~Ni~~L~~~~g~~~v~f~--qd~--~~~k~~s~~~~~~~~~ 170 (187)
T TIGR02852 98 NAMTDSPVLMAAKATLRNNKPVVLAISTNDALGLNA---VNLMRLLNTKNIYFVPFG--QDD--PFKKPNSLVAKMDYLI 170 (187)
T ss_pred ccccCcHHHHHHHHHhcCCCCEEEEECcCHHHHhCH---HHHHHHHHcCCEEEEeec--CCC--CCCCchhHHhhHHhhH
Confidence 699999998885544 67899999999999999996 9999994 8999998411 100 12331 246888888
Q ss_pred hccccCcCCC
Q psy7735 77 YGFVPNTIRK 86 (120)
Q Consensus 77 ~~v~~~~~~~ 86 (120)
+.+..++-|.
T Consensus 171 ~~~~~a~~~~ 180 (187)
T TIGR02852 171 PTIEEALQGR 180 (187)
T ss_pred HHHHHHHhCC
Confidence 8887777553
No 15
>PRK09620 hypothetical protein; Provisional
Probab=99.36 E-value=3.5e-13 Score=104.88 Aligned_cols=34 Identities=18% Similarity=-0.078 Sum_probs=31.2
Q ss_pred CcCCCCccCCCcceeeecC-CcHHHHHHHHHHHHH
Q psy7735 82 NTIRKSTEPQDPNNFVDNN-AGITEYSLTGFLYFS 115 (120)
Q Consensus 82 ~~~~~t~E~iD~vR~isN~-SG~mg~~ia~~~~~~ 115 (120)
.++|||+|+|||||||||+ ||+||++||++++.+
T Consensus 8 ITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~ 42 (229)
T PRK09620 8 ITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISK 42 (229)
T ss_pred EeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHC
Confidence 4689999999999999999 699999999999763
No 16
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=99.28 E-value=1.9e-12 Score=100.42 Aligned_cols=34 Identities=21% Similarity=0.156 Sum_probs=31.0
Q ss_pred CcCCCCccCCCcceeeecC-CcHHHHHHHHHHHHH
Q psy7735 82 NTIRKSTEPQDPNNFVDNN-AGITEYSLTGFLYFS 115 (120)
Q Consensus 82 ~~~~~t~E~iD~vR~isN~-SG~mg~~ia~~~~~~ 115 (120)
.++|||+|+|||||||||+ ||+||++||++++.+
T Consensus 5 iT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~ 39 (229)
T PRK06732 5 ITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAA 39 (229)
T ss_pred EcCCCcccccCCceeecCccchHHHHHHHHHHHhC
Confidence 3689999999999999999 799999999998763
No 17
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=99.24 E-value=4.7e-12 Score=98.05 Aligned_cols=34 Identities=21% Similarity=0.186 Sum_probs=31.0
Q ss_pred CcCCCCccCCCcceeeecC-CcHHHHHHHHHHHHH
Q psy7735 82 NTIRKSTEPQDPNNFVDNN-AGITEYSLTGFLYFS 115 (120)
Q Consensus 82 ~~~~~t~E~iD~vR~isN~-SG~mg~~ia~~~~~~ 115 (120)
.++|||+|+|||||||||+ ||.||++||++++.+
T Consensus 4 iT~G~T~e~iD~VR~itN~SSGgIG~AIA~~la~~ 38 (227)
T TIGR02114 4 VTSGGTSEPIDSVRSITNHSTGHLGKIITETFLSA 38 (227)
T ss_pred EccCCccCCCCCceeecCCcccHHHHHHHHHHHHC
Confidence 3689999999999999999 699999999999763
No 18
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=99.00 E-value=5.3e-10 Score=84.32 Aligned_cols=53 Identities=21% Similarity=0.314 Sum_probs=46.9
Q ss_pred CCCcchHHHHH-HHhccCCCCEEEEecCC------hhhhhChHHH--------HHHHHHHhC-CcEEec
Q psy7735 1 MGLCDNLLTCI-LRAWDFSKPILFCPAMN------TKMWNHPITK--------SHINTLKSW-GYEEIP 53 (120)
Q Consensus 1 ~GiaDnllt~~-~~a~~~~~PvliaPaMn------~~M~~~P~~~--------~nl~~L~~~-G~~vi~ 53 (120)
+|||||+++++ +.+++.++|++++|+|| +.+-.||+++ +|+++|+++ |+.|++
T Consensus 97 ~GiaD~l~t~~~~~~lk~~~pvvi~P~mn~~~~v~t~~p~~~~~~~~~r~~d~~~~~~L~~~~gv~v~~ 165 (174)
T TIGR02699 97 YGIADTLVTNAVIQAAKAKVPVYIMPSDYKEGTVKTALPSGRKLELRMRKVDVENVEKLAQMEGIEILT 165 (174)
T ss_pred ccccCcHHHHHHHHHhccCCCEEEEECcCCCCceeeccCCCCceeeeeccccHHHHHHHhhCCCeEEEC
Confidence 69999999987 66778899999999985 4588899999 999999998 999985
No 19
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=97.81 E-value=5.4e-05 Score=57.95 Aligned_cols=72 Identities=18% Similarity=0.172 Sum_probs=61.5
Q ss_pred CCCcchHHHHH-HHhccCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCCCccccCCCCCCCCCChhhHHhcc
Q psy7735 1 MGLCDNLLTCI-LRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKYGF 79 (120)
Q Consensus 1 ~GiaDnllt~~-~~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~g~lacg~~G~g~m~~~~~I~~~v 79 (120)
+|++|||++-. -.++..++|++++| ..|--|-.-.+|+-+|.++|.+|++|..+. .-+.-+.|++++.+
T Consensus 99 ~G~~dnLi~RAAdV~LKErR~LVLv~---REtPl~~ihLeNMlkl~~~GaiI~Pp~PaF-------Y~~P~sieDlvd~~ 168 (191)
T COG0163 99 HGFADNLITRAADVALKERRPLVLVP---RETPLSLIHLENMLKLAEMGAIIMPPMPAF-------YHKPQSIEDLVDFV 168 (191)
T ss_pred hcccccHHHHHHHHHHhhCCceEEEe---ccCCccHHHHHHHHHHHHCCCEecCCChhh-------hcCCCCHHHHHHHH
Confidence 69999999976 67788899999999 889999999999999999999999998743 34566889999887
Q ss_pred ccC
Q psy7735 80 VPN 82 (120)
Q Consensus 80 ~~~ 82 (120)
...
T Consensus 169 v~r 171 (191)
T COG0163 169 VGR 171 (191)
T ss_pred HHH
Confidence 643
No 20
>TIGR02536 eut_hyp ethanolamine utilization protein. This family of proteins is found in operons for the polyhedral organelle-based degradation of ethanolamine. This family is not found in proteobacterial species which otherwise have the same suite of genes in the eut operon. Proteobacteria have two genes that are not found in non-proteobacteria which may complement this genes function, a phosphotransacetylase (pfam01515) and the EutJ protein (TIGR02529) of unknown function.
Probab=93.09 E-value=0.27 Score=38.11 Aligned_cols=55 Identities=18% Similarity=0.134 Sum_probs=40.6
Q ss_pred CCCcchHHHHH-HHhccCCCCEEEEe-cCChhhhhC-------hHHHHHHHHHHhCCcEEecCC
Q psy7735 1 MGLCDNLLTCI-LRAWDFSKPILFCP-AMNTKMWNH-------PITKSHINTLKSWGYEEIPCV 55 (120)
Q Consensus 1 ~GiaDnllt~~-~~a~~~~~PvliaP-aMn~~M~~~-------P~~~~nl~~L~~~G~~vi~P~ 55 (120)
+|++||+.+.. +.++=.+|||+++= ++...-|.+ -.++++.++|+++|+.++...
T Consensus 72 lGi~d~~~~~~I~~~LL~GK~V~v~~eg~e~~~y~~~~p~~l~~~~~~y~~kL~sfGIk~~~~~ 135 (207)
T TIGR02536 72 HGQETNEKEKFIIAFLLEGKPIYILKPGIEYSKYENTAPYALKQKFQEYEEKLQSFGIEFIDSE 135 (207)
T ss_pred ccCCCCHHHHHHHHHHHCCCeEEEEecccchhccCccCCHHHHHHHHHHHHHHHHcCeEEeccc
Confidence 59999999866 66666699999873 344433444 247899999999999998543
No 21
>COG1036 Archaeal flavoproteins [Energy production and conversion]
Probab=92.86 E-value=0.078 Score=40.33 Aligned_cols=52 Identities=19% Similarity=0.291 Sum_probs=36.5
Q ss_pred CCCcchHHHHH-HHhccCCCCEEEEecCCh--------------hhhhChHHHHHHHHHHh-CCcEEe
Q psy7735 1 MGLCDNLLTCI-LRAWDFSKPILFCPAMNT--------------KMWNHPITKSHINTLKS-WGYEEI 52 (120)
Q Consensus 1 ~GiaDnllt~~-~~a~~~~~PvliaPaMn~--------------~M~~~P~~~~nl~~L~~-~G~~vi 52 (120)
+||||+|+|.. ..|.....|+.++|.=.. .|.-...=-+|.++|++ .|+.|+
T Consensus 107 ~GIADtLVTNAVaqa~Kg~VPvyivP~D~k~G~V~t~~~gGk~~el~vR~vDvenv~kl~~megi~Vl 174 (187)
T COG1036 107 YGIADTLVTNAVAQAGKGKVPVYIVPVDYKEGTVETTLPGGKKLELRVRKVDVENVEKLAQMEGIEVL 174 (187)
T ss_pred hhhHHHHHHHHHHHhcCCCCcEEEecccccCCeEEEcCCCCcEEEEEEeecchHHHHHHHhccCeEEe
Confidence 69999999855 788777899999996332 12223344678888865 566665
No 22
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=92.43 E-value=0.12 Score=40.13 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=21.4
Q ss_pred CCCcchHHHHH-HHhccCCCCEEEEec
Q psy7735 1 MGLCDNLLTCI-LRAWDFSKPILFCPA 26 (120)
Q Consensus 1 ~GiaDnllt~~-~~a~~~~~PvliaPa 26 (120)
+|||||+++.+ +.+....+|++++|+
T Consensus 104 ~GiaD~lit~t~~~~~k~~~pv~~vP~ 130 (234)
T TIGR02700 104 HGIADSLVTNAVAQAGKGDVPVWVVPV 130 (234)
T ss_pred ccccchHHHHHHHHHhccCCCeEEEee
Confidence 69999999877 555556799999996
No 23
>KOG2728|consensus
Probab=82.06 E-value=0.67 Score=37.58 Aligned_cols=33 Identities=24% Similarity=0.296 Sum_probs=26.8
Q ss_pred CcCCCCccCC--CcceeeecC-CcHHHHHHHHHHHH
Q psy7735 82 NTIRKSTEPQ--DPNNFVDNN-AGITEYSLTGFLYF 114 (120)
Q Consensus 82 ~~~~~t~E~i--D~vR~isN~-SG~mg~~ia~~~~~ 114 (120)
.+.|||.-++ .+||||.|. +|.-|.+=|+.+..
T Consensus 36 VTSGGTtVPLE~ntVRFiDNFSaGtRGAaSAE~Fl~ 71 (302)
T KOG2728|consen 36 VTSGGTTVPLEQNTVRFIDNFSAGTRGAASAEYFLA 71 (302)
T ss_pred EecCCeEeecccCceEeeeccCcCCccchhHHHHHh
Confidence 3678997776 589999999 59999998877653
No 24
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=69.67 E-value=15 Score=30.19 Aligned_cols=91 Identities=10% Similarity=0.101 Sum_probs=54.4
Q ss_pred CCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCCCccccCCCCCCCCCChhhHHhccccC----cCCCCccCCCcc
Q psy7735 19 KPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKYGFVPN----TIRKSTEPQDPN 94 (120)
Q Consensus 19 ~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~g~lacg~~G~g~m~~~~~I~~~v~~~----~~~~t~E~iD~v 94 (120)
-||+++ .|.-+..|..+-+=++-+.++|++||.|+--.+. +..|..-.-.-.++.+++..- |-....-.++-+
T Consensus 46 yPVilF--~HG~~l~ns~Ys~lL~HIASHGfIVVAPQl~~~~-~p~~~~Ei~~aa~V~~WL~~gL~~~Lp~~V~~nl~kl 122 (307)
T PF07224_consen 46 YPVILF--LHGFNLYNSFYSQLLAHIASHGFIVVAPQLYTLF-PPDGQDEIKSAASVINWLPEGLQHVLPENVEANLSKL 122 (307)
T ss_pred ccEEEE--eechhhhhHHHHHHHHHHhhcCeEEEechhhccc-CCCchHHHHHHHHHHHHHHhhhhhhCCCCcccccceE
Confidence 344443 3566777888999899999999999999964332 112222111223445555433 222334456665
Q ss_pred eeeecC-CcHHHHHHHHHH
Q psy7735 95 NFVDNN-AGITEYSLTGFL 112 (120)
Q Consensus 95 R~isN~-SG~mg~~ia~~~ 112 (120)
=...-- .||+.+|||-..
T Consensus 123 al~GHSrGGktAFAlALg~ 141 (307)
T PF07224_consen 123 ALSGHSRGGKTAFALALGY 141 (307)
T ss_pred EEeecCCccHHHHHHHhcc
Confidence 555433 499999999754
No 25
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=66.42 E-value=5.4 Score=26.44 Aligned_cols=19 Identities=21% Similarity=0.223 Sum_probs=16.5
Q ss_pred ChHHHHHHHHHHhCCcEEe
Q psy7735 34 HPITKSHINTLKSWGYEEI 52 (120)
Q Consensus 34 ~P~~~~nl~~L~~~G~~vi 52 (120)
.-++.+|+++||++|+.|-
T Consensus 33 RtaVwK~Iq~Lr~~G~~I~ 51 (79)
T COG1654 33 RTAVWKHIQQLREEGVDIE 51 (79)
T ss_pred HHHHHHHHHHHHHhCCceE
Confidence 4578999999999999875
No 26
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=64.09 E-value=5 Score=27.02 Aligned_cols=40 Identities=15% Similarity=0.124 Sum_probs=25.6
Q ss_pred CCCCCCChhhHHhccccCcCCCCccCCCcceeeecCCcHHHHHHHHHH
Q psy7735 65 GLGAMAEVDTIKYGFVPNTIRKSTEPQDPNNFVDNNAGITEYSLTGFL 112 (120)
Q Consensus 65 G~g~m~~~~~I~~~v~~~~~~~t~E~iD~vR~isN~SG~mg~~ia~~~ 112 (120)
|....|...+.++.+.+. ==|++|+||+|+++-..+++.+
T Consensus 12 g~~~ipga~e~l~~L~~~--------g~~~~~lTNns~~s~~~~~~~L 51 (101)
T PF13344_consen 12 GNEPIPGAVEALDALRER--------GKPVVFLTNNSSRSREEYAKKL 51 (101)
T ss_dssp TTEE-TTHHHHHHHHHHT--------TSEEEEEES-SSS-HHHHHHHH
T ss_pred CCCcCcCHHHHHHHHHHc--------CCCEEEEeCCCCCCHHHHHHHH
Confidence 334466667777666433 1589999999988877777766
No 27
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=62.87 E-value=22 Score=27.48 Aligned_cols=38 Identities=21% Similarity=0.269 Sum_probs=26.2
Q ss_pred HHHHhccCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEe
Q psy7735 10 CILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEI 52 (120)
Q Consensus 10 ~~~~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi 52 (120)
++.++.-.++|++++|-.+ .++. .-|.+.|++.|+-++
T Consensus 262 t~~Ea~~~g~P~l~ip~~~--~~EQ---~~~a~~l~~~G~~~~ 299 (318)
T PF13528_consen 262 TISEALALGKPALVIPRPG--QDEQ---EYNARKLEELGLGIV 299 (318)
T ss_pred HHHHHHHcCCCEEEEeCCC--CchH---HHHHHHHHHCCCeEE
Confidence 4555555699999999653 3333 556778888998754
No 28
>PHA03073 late transcription factor VLTF-2; Provisional
Probab=61.53 E-value=19 Score=26.70 Aligned_cols=42 Identities=21% Similarity=0.274 Sum_probs=32.5
Q ss_pred chHHHHH--HHhccCCCCEEEEecCChhhhhCh-HHHHHHHHHHh-CCc
Q psy7735 5 DNLLTCI--LRAWDFSKPILFCPAMNTKMWNHP-ITKSHINTLKS-WGY 49 (120)
Q Consensus 5 Dnllt~~--~~a~~~~~PvliaPaMn~~M~~~P-~~~~nl~~L~~-~G~ 49 (120)
|++.+.+ ..|+...-++-+.| ..+|+|| -+...++.||+ .|+
T Consensus 84 DSfa~~Vk~~vALREePKi~LLP---l~~y~~pe~V~niIN~Lrnkegv 129 (150)
T PHA03073 84 DSFASMVKSHVALREEPKITLLP---LVFYEDPEEVINIINLLRNKEGV 129 (150)
T ss_pred HHHHHHHHHHhhhccCCceEEec---hhhhcCHHHHHHHHHhhhhhcCc
Confidence 6666665 55665566788899 9999999 89999999975 554
No 29
>COG1282 PntB NAD/NADP transhydrogenase beta subunit [Energy production and conversion]
Probab=57.90 E-value=18 Score=31.04 Aligned_cols=40 Identities=20% Similarity=0.348 Sum_probs=30.8
Q ss_pred CCCEEEEec--CChhhhhChHHHHHHHHHHhCCcEE---ecCCCCc
Q psy7735 18 SKPILFCPA--MNTKMWNHPITKSHINTLKSWGYEE---IPCVSKT 58 (120)
Q Consensus 18 ~~PvliaPa--Mn~~M~~~P~~~~nl~~L~~~G~~v---i~P~~g~ 58 (120)
...|+|+|. |-.+..+|| +++=-++|++.|+.| |.|.-|+
T Consensus 308 A~sVIIvPGYGmAVAQAQh~-v~E~~~~L~~~Gv~VrfaIHPVAGR 352 (463)
T COG1282 308 ASSVIIVPGYGMAVAQAQHP-VAEITEKLRARGVNVRFAIHPVAGR 352 (463)
T ss_pred CCeEEEecCchHHHHhhhhH-HHHHHHHHHhcCCeeeEeecccccC
Confidence 478999995 555666675 488889999999876 6888754
No 30
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=54.78 E-value=53 Score=23.85 Aligned_cols=82 Identities=9% Similarity=-0.046 Sum_probs=39.0
Q ss_pred CCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCCCccccCCCCCCCCCChhhHHhccccCcCCCCccCCCcceeee
Q psy7735 19 KPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKYGFVPNTIRKSTEPQDPNNFVD 98 (120)
Q Consensus 19 ~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~g~lacg~~G~g~m~~~~~I~~~v~~~~~~~t~E~iD~vR~is 98 (120)
.||++++..-... -.+++.+..|+ ++.++-|+. .-+|....-...+.++..+.+.+.+ ....++++-++.
T Consensus 3 p~vvllHG~~~~~---~~w~~~~~~l~--~~~vi~~D~--~G~G~S~~~~~~~~~~~~~~l~~~l---~~~~~~~~~lvG 72 (242)
T PRK11126 3 PWLVFLHGLLGSG---QDWQPVGEALP--DYPRLYIDL--PGHGGSAAISVDGFADVSRLLSQTL---QSYNILPYWLVG 72 (242)
T ss_pred CEEEEECCCCCCh---HHHHHHHHHcC--CCCEEEecC--CCCCCCCCccccCHHHHHHHHHHHH---HHcCCCCeEEEE
Confidence 3588888654432 23455556664 466665553 1111111111124555555444333 122456777777
Q ss_pred cC-CcHHHHHHHH
Q psy7735 99 NN-AGITEYSLTG 110 (120)
Q Consensus 99 N~-SG~mg~~ia~ 110 (120)
.- .|..+..+|.
T Consensus 73 ~S~Gg~va~~~a~ 85 (242)
T PRK11126 73 YSLGGRIAMYYAC 85 (242)
T ss_pred ECHHHHHHHHHHH
Confidence 54 3444444443
No 31
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=53.29 E-value=19 Score=24.17 Aligned_cols=46 Identities=15% Similarity=0.157 Sum_probs=33.6
Q ss_pred hhhChHHHHHHHHHHhCCcEEecCCCCccccCCCCCCCCCChhhHHhccccCc
Q psy7735 31 MWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKYGFVPNT 83 (120)
Q Consensus 31 M~~~P~~~~nl~~L~~~G~~vi~P~~g~lacg~~G~g~m~~~~~I~~~v~~~~ 83 (120)
-++.|++.+--+.|++.|+.|+.|..- +...-.+|++.+..-...+
T Consensus 12 ~~N~~~f~~~a~~L~~~G~~vvnPa~~-------~~~~~~~~~~ym~~~l~~L 57 (92)
T PF14359_consen 12 DYNRPAFNAAAKRLRAKGYEVVNPAEL-------GIPEGLSWEEYMRICLAML 57 (92)
T ss_pred chHHHHHHHHHHHHHHCCCEEeCchhh-------CCCCCCCHHHHHHHHHHHH
Confidence 567799999999999999999999972 2222236888776555444
No 32
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=52.71 E-value=29 Score=30.16 Aligned_cols=62 Identities=19% Similarity=0.251 Sum_probs=35.5
Q ss_pred CCCEEEEecCChhhhhCh-HHHHHHHHHHhCCcEE---ecCCCCc--------cccCCCCCCCCCChhhHHhcc
Q psy7735 18 SKPILFCPAMNTKMWNHP-ITKSHINTLKSWGYEE---IPCVSKT--------LMCGDTGLGAMAEVDTIKYGF 79 (120)
Q Consensus 18 ~~PvliaPaMn~~M~~~P-~~~~nl~~L~~~G~~v---i~P~~g~--------lacg~~G~g~m~~~~~I~~~v 79 (120)
-+.|+|+|-+--+.-+.. ++++=.++|++.|+.| |.|..|+ ||.-++-.-++-|-|||=+..
T Consensus 307 A~~VvIVPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPGHMNVLLAEa~VpYd~~~emdeiN~~f 380 (463)
T PF02233_consen 307 AKKVVIVPGYGMAVAQAQHAVAELADLLEERGVEVKFAIHPVAGRMPGHMNVLLAEANVPYDIVKEMDEINPDF 380 (463)
T ss_dssp -SEEEEEESHHHHHCTTHHHHHHHHHHHHHTT-EEEEEE-TTSSSSTTHHHHHHHHCT--GGGEEEHHHHGGGG
T ss_pred cCceEEecCchHHHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCCCcceEEEEecCCCHHHHhhhhhcccch
Confidence 489999996554443332 3466667789999886 6888764 333344444555666664443
No 33
>COG5157 CDC73 RNA polymerase II assessory factor [Transcription]
Probab=50.83 E-value=16 Score=30.22 Aligned_cols=72 Identities=21% Similarity=0.234 Sum_probs=47.3
Q ss_pred CCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCCCccccCCCCCCCCCChhhHHhcccc--------CcCCCCcc
Q psy7735 18 SKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKYGFVP--------NTIRKSTE 89 (120)
Q Consensus 18 ~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~g~lacg~~G~g~m~~~~~I~~~v~~--------~~~~~t~E 89 (120)
+-||+++|. -..+|.|-.|+++.-+.|. +|.|..- -.|.+.| +..+.+.....+.. -+.+-+.|
T Consensus 204 kDPIIlvp~----saSS~lt~~NIK~FleEgk-yV~P~n~-~~~~~G~--~i~~~eK~~~~~~g~~rfIiVd~t~~Fkpe 275 (362)
T COG5157 204 KDPIILVPQ----SASSPLTLSNIKEFLEEGK-YVNPRNL-PSCSDGI--RISEVEKVELDLDGPFRFIIVDDTGGFKPE 275 (362)
T ss_pred CCceEEecc----ccccceeHHHHHHHHHhcC-ccCcccc-ccCCCCc--eEEeeeehhhcccCceEEEEEcCCCCcChh
Confidence 569999983 4568899999999877774 5677752 2344443 66666665554432 13455889
Q ss_pred CCCcceee
Q psy7735 90 PQDPNNFV 97 (120)
Q Consensus 90 ~iD~vR~i 97 (120)
+.|-|=.|
T Consensus 276 yWdRVVci 283 (362)
T COG5157 276 YWDRVVCI 283 (362)
T ss_pred hhceEEEE
Confidence 99987655
No 34
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=47.04 E-value=43 Score=29.18 Aligned_cols=41 Identities=15% Similarity=0.198 Sum_probs=28.2
Q ss_pred CCCEEEEecCChhhhhCh-HHHHHHHHHHhCCcEE---ecCCCCc
Q psy7735 18 SKPILFCPAMNTKMWNHP-ITKSHINTLKSWGYEE---IPCVSKT 58 (120)
Q Consensus 18 ~~PvliaPaMn~~M~~~P-~~~~nl~~L~~~G~~v---i~P~~g~ 58 (120)
-+.|+|+|.+--+-.+.. .+++=.+.|++.|+.| |.|.-|+
T Consensus 306 A~~ViIVPGYGmAVAqAQh~v~el~~~L~~~Gv~V~faIHPVAGR 350 (462)
T PRK09444 306 SHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPVAGR 350 (462)
T ss_pred CCcEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEecccccc
Confidence 589999997655544332 3455566678899886 6788754
No 35
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=46.69 E-value=24 Score=20.22 Aligned_cols=19 Identities=16% Similarity=0.331 Sum_probs=15.5
Q ss_pred hhChHHHHHHHHHHhCCcE
Q psy7735 32 WNHPITKSHINTLKSWGYE 50 (120)
Q Consensus 32 ~~~P~~~~nl~~L~~~G~~ 50 (120)
...+.+.++++.|++.|++
T Consensus 27 ~s~~~vs~hL~~L~~~glV 45 (47)
T PF01022_consen 27 LSQSTVSHHLKKLREAGLV 45 (47)
T ss_dssp S-HHHHHHHHHHHHHTTSE
T ss_pred ccchHHHHHHHHHHHCcCe
Confidence 3468899999999999975
No 36
>PLN00021 chlorophyllase
Probab=46.58 E-value=68 Score=25.89 Aligned_cols=83 Identities=11% Similarity=0.105 Sum_probs=42.7
Q ss_pred hhhhhChHHHHHHHHHHhCCcEEecCCCCccccCCCCCCCCCChhhHHhccccCcC----CCCccCCCcceeeecC-CcH
Q psy7735 29 TKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKYGFVPNTI----RKSTEPQDPNNFVDNN-AGI 103 (120)
Q Consensus 29 ~~M~~~P~~~~nl~~L~~~G~~vi~P~~g~lacg~~G~g~m~~~~~I~~~v~~~~~----~~t~E~iD~vR~isN~-SG~ 103 (120)
..++.+-.+..-++.|.++|+.|+.|+.-.++ +......+.+.+++++++.+.+. +......+.+-.+..- .|.
T Consensus 60 G~~~~~~~y~~l~~~Las~G~~VvapD~~g~~-~~~~~~~i~d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~ 138 (313)
T PLN00021 60 GYLLYNSFYSQLLQHIASHGFIVVAPQLYTLA-GPDGTDEIKDAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGK 138 (313)
T ss_pred CCCCCcccHHHHHHHHHhCCCEEEEecCCCcC-CCCchhhHHHHHHHHHHHHhhhhhhcccccccChhheEEEEECcchH
Confidence 44455556667778888999999988742221 11111112223344444443221 1122233445555544 388
Q ss_pred HHHHHHHHH
Q psy7735 104 TEYSLTGFL 112 (120)
Q Consensus 104 mg~~ia~~~ 112 (120)
++..+|...
T Consensus 139 iA~~lA~~~ 147 (313)
T PLN00021 139 TAFALALGK 147 (313)
T ss_pred HHHHHHhhc
Confidence 888887543
No 37
>PF07283 TrbH: Conjugal transfer protein TrbH; InterPro: IPR010837 This entry represents TrbH, a bacterial conjugal transfer protein approximately 150 residues long. TrbH contains a putative membrane lipoprotein lipid attachment site [].
Probab=45.72 E-value=50 Score=23.57 Aligned_cols=49 Identities=12% Similarity=0.204 Sum_probs=33.9
Q ss_pred CcchHHHHHHHhccCC-CCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCC
Q psy7735 3 LCDNLLTCILRAWDFS-KPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVS 56 (120)
Q Consensus 3 iaDnllt~~~~a~~~~-~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~ 56 (120)
||++.+.-+.+-++.. ..+.+ + .-...+..+.=++.||.+||-|++-..
T Consensus 8 iA~D~v~qL~~~ypPA~Tt~~L---~--q~~~d~Fg~aL~~~LR~~GYaV~e~~~ 57 (121)
T PF07283_consen 8 IAGDMVSQLAEQYPPAKTTFEL---K--QKDPDPFGQALENALRAKGYAVIEDDP 57 (121)
T ss_pred HHHHHHHHHHHhcCCCccEEEE---E--cCCCChHHHHHHHHHHhcCcEEEecCC
Confidence 5778888887777643 34444 1 235667777777889999999996553
No 38
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=45.71 E-value=16 Score=29.42 Aligned_cols=46 Identities=17% Similarity=0.144 Sum_probs=30.4
Q ss_pred CCCCChhhHHhccccCcCCCCccCCCcceeeecCCcHHHHHHHHHHHHHh
Q psy7735 67 GAMAEVDTIKYGFVPNTIRKSTEPQDPNNFVDNNAGITEYSLTGFLYFSL 116 (120)
Q Consensus 67 g~m~~~~~I~~~v~~~~~~~t~E~iD~vR~isN~SG~mg~~ia~~~~~~~ 116 (120)
.-.|.+.+.++.+.... + +.=-|++|+||.+|+.-..+++.+...+
T Consensus 16 ~~i~ga~eal~~L~~~~-~---~~g~~~~flTNn~g~s~~~~~~~l~~~l 61 (321)
T TIGR01456 16 KPIAGASDALRRLNRNQ-G---QLKIPYIFLTNGGGFSERARAEEISSLL 61 (321)
T ss_pred cccHHHHHHHHHHhccc-c---ccCCCEEEEecCCCCCHHHHHHHHHHHc
Confidence 33666666666654321 1 1124579999999999999988885544
No 39
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=42.05 E-value=79 Score=21.96 Aligned_cols=83 Identities=8% Similarity=-0.055 Sum_probs=41.2
Q ss_pred CCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCCCccccCCCC---CCCCCChhhHHhc-cccCcCCCCccCCCcc
Q psy7735 19 KPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTG---LGAMAEVDTIKYG-FVPNTIRKSTEPQDPN 94 (120)
Q Consensus 19 ~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~g~lacg~~G---~g~m~~~~~I~~~-v~~~~~~~t~E~iD~v 94 (120)
.+|++++..... ...++..++.|. .|+.|+-++.- -+|... .....+++++++. +..... .-..+++
T Consensus 2 ~~vv~~hG~~~~---~~~~~~~~~~L~-~~~~v~~~d~~--g~G~s~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 72 (251)
T TIGR03695 2 PVLVFLHGFLGS---GADWQALIELLG-PHFRCLAIDLP--GHGSSQSPDEIERYDFEEAAQDILATLLD---QLGIEPF 72 (251)
T ss_pred CEEEEEcCCCCc---hhhHHHHHHHhc-ccCeEEEEcCC--CCCCCCCCCccChhhHHHHHHHHHHHHHH---HcCCCeE
Confidence 467777754332 334566777786 57777655521 112111 1123456666655 322210 1134566
Q ss_pred eeeecC-CcHHHHHHHH
Q psy7735 95 NFVDNN-AGITEYSLTG 110 (120)
Q Consensus 95 R~isN~-SG~mg~~ia~ 110 (120)
-++..- .|..+..+|.
T Consensus 73 ~l~G~S~Gg~ia~~~a~ 89 (251)
T TIGR03695 73 FLVGYSMGGRIALYYAL 89 (251)
T ss_pred EEEEeccHHHHHHHHHH
Confidence 676654 3555555554
No 40
>PF02016 Peptidase_S66: LD-carboxypeptidase; InterPro: IPR003507 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature is found in the Escherichia coli microcin C7 self-immunity protein mccF and in muramoyltetrapeptide carboxypeptidase (3.4.17.13 from EC, LD-carboxypeptidase A). LD-carboxypeptidase A belongs to MEROPS peptidase family S66 (clan SS). The entry also contains uncharacterised proteins including hypothetical proteins from various bacteria archaea.; PDB: 1ZRS_A 1ZL0_B 2AUM_B 2AUN_B 3TLG_A 3TLC_A 3TLZ_B 3TLY_B 3TLE_A 3TLB_B ....
Probab=40.37 E-value=51 Score=26.22 Aligned_cols=30 Identities=20% Similarity=0.464 Sum_probs=22.3
Q ss_pred EEEecCChhhhhChHHHHHHHHHHhCCcEEec
Q psy7735 22 LFCPAMNTKMWNHPITKSHINTLKSWGYEEIP 53 (120)
Q Consensus 22 liaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~ 53 (120)
+++|| ..-.....+++-++.|+++|+.|..
T Consensus 3 ivaPS--~~~~~~~~l~~~~~~L~~~G~~v~~ 32 (284)
T PF02016_consen 3 IVAPS--LSPIDPERLERGIKRLESWGFKVVV 32 (284)
T ss_dssp EE-SS--HHHHCHHHHHHHHHHHHHTTEEEEE
T ss_pred EEeCC--CCccCHHHHHHHHHHHHhCCCEEEE
Confidence 67888 3334447889999999999999863
No 41
>PF07799 DUF1643: Protein of unknown function (DUF1643); InterPro: IPR012441 This entry is represented by Bacteriophage D3, Orf41.6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The members of this family are all sequences found within hypothetical proteins expressed by various bacteria, archaea and phage. The region concerned is approximately 150 residues long.
Probab=38.72 E-value=51 Score=22.99 Aligned_cols=36 Identities=33% Similarity=0.686 Sum_probs=28.0
Q ss_pred ccCCCCEEEEecCChhhhhC----hHHHHHHHHHHhCCcE
Q psy7735 15 WDFSKPILFCPAMNTKMWNH----PITKSHINTLKSWGYE 50 (120)
Q Consensus 15 ~~~~~PvliaPaMn~~M~~~----P~~~~nl~~L~~~G~~ 50 (120)
|+.++|.+++=.||++..+. |.+++=++..+.+|+-
T Consensus 8 w~~~~~~~~~I~lNPS~A~~~~~D~T~~~~~~~a~~~gyg 47 (136)
T PF07799_consen 8 WDSGKPPLLFIGLNPSTADAEKDDPTIRRCINFARRWGYG 47 (136)
T ss_pred ECCCCCEEEEEEeCCCCCCCcCCCHHHHHHHHHHhhcCCC
Confidence 44567877787888888776 8888888888888763
No 42
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=37.29 E-value=90 Score=24.41 Aligned_cols=65 Identities=15% Similarity=0.177 Sum_probs=41.3
Q ss_pred hHHHHHH-HhccCCCCEEEEecCChhhhhChHHHHHHHH-HHhCCcEEecCCCCccccCCCCCCCCCChhhHHhc
Q psy7735 6 NLLTCIL-RAWDFSKPILFCPAMNTKMWNHPITKSHINT-LKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKYG 78 (120)
Q Consensus 6 nllt~~~-~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~-L~~~G~~vi~P~~g~lacg~~G~g~m~~~~~I~~~ 78 (120)
|+...+. .+-..+.+-+|+|+-.+. |..++.+++ |++.|+.++-|.. -|.-.- .+.|..++-++.
T Consensus 63 Dl~~~l~~~~~e~g~kavIvp~~~~~----~g~~~~lk~~~e~~gi~~~~P~~---~CsL~~-~~~p~i~~F~~~ 129 (217)
T PF02593_consen 63 DLTYELPEIAKEAGVKAVIVPSESPK----PGLRRQLKKQLEEFGIEVEFPKP---FCSLEE-NGNPQIDEFAEY 129 (217)
T ss_pred hhHHHHHHHHHHcCCCEEEEecCCCc----cchHHHHHHHHHhcCceeecCcc---ccccCC-CCChhHHHHHHH
Confidence 4444442 333357899999999998 666666665 5889988887764 343332 445555655554
No 43
>TIGR00122 birA_repr_reg BirA biotin operon repressor domain. This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value.
Probab=36.77 E-value=97 Score=18.87 Aligned_cols=23 Identities=26% Similarity=0.596 Sum_probs=18.8
Q ss_pred ChHHHHHHHHHHhCCcEEecCCC
Q psy7735 34 HPITKSHINTLKSWGYEEIPCVS 56 (120)
Q Consensus 34 ~P~~~~nl~~L~~~G~~vi~P~~ 56 (120)
.+.+++.++.|++.|+.+..+..
T Consensus 27 ~~tv~~~l~~L~~~g~~i~~~~~ 49 (69)
T TIGR00122 27 RTAVNKHIQTLREWGVDVLTVGK 49 (69)
T ss_pred HHHHHHHHHHHHHCCCeEEecCC
Confidence 47899999999999998776533
No 44
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=36.45 E-value=23 Score=28.70 Aligned_cols=20 Identities=35% Similarity=0.632 Sum_probs=17.5
Q ss_pred hhChHHHHHHHHHHhCCcEE
Q psy7735 32 WNHPITKSHINTLKSWGYEE 51 (120)
Q Consensus 32 ~~~P~~~~nl~~L~~~G~~v 51 (120)
.+.|+..|-|++|++||+.|
T Consensus 195 R~apah~RvI~TLr~Wgv~v 214 (264)
T PF06189_consen 195 RSAPAHERVIRTLRSWGVRV 214 (264)
T ss_pred CCCchhHHHHHHHHHcCCcH
Confidence 45788899999999999876
No 45
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=36.27 E-value=84 Score=24.84 Aligned_cols=37 Identities=8% Similarity=0.224 Sum_probs=24.6
Q ss_pred CEEEEecCChhhhh-ChHHHHHHHHHHhCCcEEecCCC
Q psy7735 20 PILFCPAMNTKMWN-HPITKSHINTLKSWGYEEIPCVS 56 (120)
Q Consensus 20 PvliaPaMn~~M~~-~P~~~~nl~~L~~~G~~vi~P~~ 56 (120)
+|++++.+-..|-. +..++...+.|.+.|+.++-++.
T Consensus 27 ~VlllHG~g~~~~~~~~~~~~la~~La~~Gy~Vl~~Dl 64 (266)
T TIGR03101 27 VVIYLPPFAEEMNKSRRMVALQARAFAAGGFGVLQIDL 64 (266)
T ss_pred EEEEECCCcccccchhHHHHHHHHHHHHCCCEEEEECC
Confidence 47788875543322 34556677888889999886653
No 46
>PF14094 DUF4272: Domain of unknown function (DUF4272)
Probab=35.30 E-value=42 Score=25.79 Aligned_cols=38 Identities=21% Similarity=0.187 Sum_probs=28.2
Q ss_pred HHHHHHHHhCCcEEe---cCCCCccccCCCCCCCCCChhhHHhcccc
Q psy7735 38 KSHINTLKSWGYEEI---PCVSKTLMCGDTGLGAMAEVDTIKYGFVP 81 (120)
Q Consensus 38 ~~nl~~L~~~G~~vi---~P~~g~lacg~~G~g~m~~~~~I~~~v~~ 81 (120)
++|+++|++.|+.+. +|.. .+..-.+.+.++|...+..
T Consensus 3 ~~s~~~L~~~Gi~~~~~LP~~~------~~~e~~~R~~~EIa~Ra~a 43 (209)
T PF14094_consen 3 ERSIARLKSQGIPVPEHLPPVE------SEEEVTLRSAEEIARRAIA 43 (209)
T ss_pred hHHHHHHHHcCCCCCCCCCccC------CccccCCCCHHHHHHHHHH
Confidence 579999999999876 3332 4556678899999886643
No 47
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=35.22 E-value=86 Score=26.60 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=32.4
Q ss_pred CCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEe
Q psy7735 18 SKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEI 52 (120)
Q Consensus 18 ~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi 52 (120)
.+||.++.-.|-.-=-.|.+++.+++|++.|+.+.
T Consensus 219 ~~~v~~~tH~NHp~Eit~e~~~A~~~L~~aGv~l~ 253 (369)
T COG1509 219 RKPVWLVTHFNHPNEITPEAREACAKLRDAGVPLL 253 (369)
T ss_pred CceEEEEcccCChhhcCHHHHHHHHHHHHcCceee
Confidence 59999999999998889999999999999998775
No 48
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=34.88 E-value=49 Score=26.55 Aligned_cols=32 Identities=13% Similarity=0.126 Sum_probs=23.3
Q ss_pred EEEecCChhhhhChHHHHHHHHHHhCCcEEec
Q psy7735 22 LFCPAMNTKMWNHPITKSHINTLKSWGYEEIP 53 (120)
Q Consensus 22 liaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~ 53 (120)
+++||=...-.....+++-++.|+++|+.|+.
T Consensus 5 ivAPS~~~~~~~~~~~~~~~~~L~~~G~~v~~ 36 (308)
T cd07062 5 VVSPSSGIPGELPHRLERAKKRLENLGFEVVE 36 (308)
T ss_pred EEeCCCCCcccCHHHHHHHHHHHHhCCCEEEE
Confidence 67887443322257789999999999999764
No 49
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=34.77 E-value=1.4e+02 Score=23.10 Aligned_cols=90 Identities=14% Similarity=0.060 Sum_probs=43.6
Q ss_pred CCCEEEEecCChhhhhChHHHHHHHHH-HhCCcEEecCCCCc----cccCC-----CCCCCCCChhhHHhccccCcCCCC
Q psy7735 18 SKPILFCPAMNTKMWNHPITKSHINTL-KSWGYEEIPCVSKT----LMCGD-----TGLGAMAEVDTIKYGFVPNTIRKS 87 (120)
Q Consensus 18 ~~PvliaPaMn~~M~~~P~~~~nl~~L-~~~G~~vi~P~~g~----lacg~-----~G~g~m~~~~~I~~~v~~~~~~~t 87 (120)
+.|+||+--=-..--+.-...-.+..| ++.|+.|+-|+... .-|-+ ...|+ -|.+.|.+.|.. +. .
T Consensus 15 ~~PLVv~LHG~~~~a~~~~~~s~~~~lAd~~GfivvyP~~~~~~~~~~cw~w~~~~~~~g~-~d~~~i~~lv~~-v~--~ 90 (220)
T PF10503_consen 15 PVPLVVVLHGCGQSAEDFAAGSGWNALADREGFIVVYPEQSRRANPQGCWNWFSDDQQRGG-GDVAFIAALVDY-VA--A 90 (220)
T ss_pred CCCEEEEeCCCCCCHHHHHhhcCHHHHhhcCCeEEEcccccccCCCCCcccccccccccCc-cchhhHHHHHHh-Hh--h
Confidence 468777642221111111223345667 56899999888532 12322 11121 133333333322 22 2
Q ss_pred ccCCCcceee-ecCC--cHHHHHHHHH
Q psy7735 88 TEPQDPNNFV-DNNA--GITEYSLTGF 111 (120)
Q Consensus 88 ~E~iD~vR~i-sN~S--G~mg~~ia~~ 111 (120)
+-.|||-|+- +=.| |-|...+|-+
T Consensus 91 ~~~iD~~RVyv~G~S~Gg~ma~~la~~ 117 (220)
T PF10503_consen 91 RYNIDPSRVYVTGLSNGGMMANVLACA 117 (220)
T ss_pred hcccCCCceeeEEECHHHHHHHHHHHh
Confidence 4489999964 3335 5677666643
No 50
>KOG1696|consensus
Probab=34.66 E-value=63 Score=24.82 Aligned_cols=47 Identities=17% Similarity=0.150 Sum_probs=33.2
Q ss_pred HHHHHHHhccCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCC
Q psy7735 7 LLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVS 56 (120)
Q Consensus 7 llt~~~~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~ 56 (120)
|+++++.+- ++.|-+-|.=-.. ..++..++|+++|..+|++|-.|..
T Consensus 10 LAssVl~cG--KkKvWlDpNE~~e-I~~ansRq~irkLikdg~iI~Kp~~ 56 (193)
T KOG1696|consen 10 LAASVLKCG--KKKVWLDPNEISE-ISGANSRQNIRKLIKDGLIIRKPVT 56 (193)
T ss_pred HHHHHHHhc--ccceeeCccHHHH-hcccchHHHHHHHHhCCeEeecchh
Confidence 455665543 5677777744333 4467789999999999998887773
No 51
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=34.39 E-value=1.3e+02 Score=22.81 Aligned_cols=34 Identities=3% Similarity=-0.077 Sum_probs=21.4
Q ss_pred CCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCC
Q psy7735 18 SKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCV 55 (120)
Q Consensus 18 ~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~ 55 (120)
+.|||+++.+..+.+ .++..+..|.+.+ +++-|+
T Consensus 29 ~~~vlllHG~~~~~~---~w~~~~~~L~~~~-~vi~~D 62 (294)
T PLN02824 29 GPALVLVHGFGGNAD---HWRKNTPVLAKSH-RVYAID 62 (294)
T ss_pred CCeEEEECCCCCChh---HHHHHHHHHHhCC-eEEEEc
Confidence 568999987664432 3445667787665 666444
No 52
>COG4738 Predicted transcriptional regulator [Transcription]
Probab=34.00 E-value=43 Score=24.11 Aligned_cols=46 Identities=15% Similarity=0.141 Sum_probs=34.0
Q ss_pred hhhChHHHHHHHHHHhCCcEEecCCCCccccCCCCCCCC-------CChhhHHhccccC
Q psy7735 31 MWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAM-------AEVDTIKYGFVPN 82 (120)
Q Consensus 31 M~~~P~~~~nl~~L~~~G~~vi~P~~g~lacg~~G~g~m-------~~~~~I~~~v~~~ 82 (120)
-.+.|-|-=.++-|+++||+=.--.- ..|+||. .+.++|++.+.+.
T Consensus 52 gLRQPEVSiAMr~Lre~gWV~~R~eK------KkGKGRPik~Y~Lt~~~~eIvs~iee~ 104 (124)
T COG4738 52 GLRQPEVSIAMRYLRENGWVDEREEK------KKGKGRPIKLYRLTVPFDEIVSEIEEE 104 (124)
T ss_pred cCCCchhHHHHHHHHHccccchHHhc------ccCCCCCceEEEecCcHHHHHHHHHHH
Confidence 45789999999999999997553332 3588874 5778888877654
No 53
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=33.62 E-value=66 Score=18.23 Aligned_cols=23 Identities=9% Similarity=0.079 Sum_probs=17.7
Q ss_pred hChHHHHHHHHHHhCCcEEecCC
Q psy7735 33 NHPITKSHINTLKSWGYEEIPCV 55 (120)
Q Consensus 33 ~~P~~~~nl~~L~~~G~~vi~P~ 55 (120)
..+.+++.++.|++.|+....|.
T Consensus 33 s~~tv~~~l~~L~~~g~i~~~~~ 55 (60)
T smart00345 33 SRTTVREALSRLEAEGLVQRRPG 55 (60)
T ss_pred CHHHHHHHHHHHHHCCCEEEecC
Confidence 45788999999999998654443
No 54
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands. Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....
Probab=32.90 E-value=98 Score=20.16 Aligned_cols=51 Identities=16% Similarity=0.167 Sum_probs=30.4
Q ss_pred EEEE--ecCC------hhhhhChHHHHHHHHHHhCCcEE-ecCCCCccccCCCCCCCCCChhhHHhc
Q psy7735 21 ILFC--PAMN------TKMWNHPITKSHINTLKSWGYEE-IPCVSKTLMCGDTGLGAMAEVDTIKYG 78 (120)
Q Consensus 21 vlia--PaMn------~~M~~~P~~~~nl~~L~~~G~~v-i~P~~g~lacg~~G~g~m~~~~~I~~~ 78 (120)
|+-+ |.|+ ..-+-..++++-++..++.++.- .=|..| .|.+.+ +|+++.+.
T Consensus 58 Iih~v~P~~~~~~~~~~~~~L~~~~~~~l~~a~~~~~~sIa~P~ig------~G~~g~-~~~~~a~i 117 (118)
T PF01661_consen 58 IIHAVGPTYNSPGEKNSYEALESAYRNALQKAEENGIKSIAFPAIG------TGIGGF-PWDEVAEI 117 (118)
T ss_dssp EEEEEEEETTTSTSTTHHHHHHHHHHHHHHHHHHTTTSEEEEESTT------SSTTSB-THHHHHHH
T ss_pred eEEEecceeccccccccHHHHHHHHHHHHHHHHHcCCcccccCccc------CCCCCC-CHHHHHhh
Confidence 5555 8875 33344445566666666777653 345543 366677 88888653
No 55
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=32.77 E-value=85 Score=25.48 Aligned_cols=40 Identities=15% Similarity=0.139 Sum_probs=31.0
Q ss_pred HHHHHHhccCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEE
Q psy7735 8 LTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEE 51 (120)
Q Consensus 8 lt~~~~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~v 51 (120)
++.+.+|.-.++||.++|-= - .+.-+++-++.|++.|+.-
T Consensus 239 vSMvsEA~~tG~pV~v~~l~---~-~~~r~~r~~~~L~~~g~~r 278 (311)
T PF06258_consen 239 VSMVSEAAATGKPVYVLPLP---G-RSGRFRRFHQSLEERGAVR 278 (311)
T ss_pred HHHHHHHHHcCCCEEEecCC---C-cchHHHHHHHHHHHCCCEE
Confidence 44556777679999999732 2 7778999999999999754
No 56
>COG3727 Vsr DNA G:T-mismatch repair endonuclease [DNA replication, recombination, and repair]
Probab=32.65 E-value=44 Score=24.75 Aligned_cols=33 Identities=24% Similarity=0.446 Sum_probs=23.2
Q ss_pred CCEEEEecCChhhhhChHHHHH-------HHHHHhCCcEEe
Q psy7735 19 KPILFCPAMNTKMWNHPITKSH-------INTLKSWGYEEI 52 (120)
Q Consensus 19 ~PvliaPaMn~~M~~~P~~~~n-------l~~L~~~G~~vi 52 (120)
+.+.=+|.-|+..|.-.+ ++| ++.|++.|+.|+
T Consensus 73 c~~a~vPksnt~fWleKi-~kNveRD~r~~~~L~~~Gwrvl 112 (150)
T COG3727 73 CYLAKVPKSNTEFWLEKI-GKNVERDERDIKRLQQLGWRVL 112 (150)
T ss_pred cccccCCCcchHHHHHHH-hhhhhhhHHHHHHHHHcCCeEE
Confidence 334446888999997544 444 556889999875
No 57
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=32.48 E-value=2.3e+02 Score=21.74 Aligned_cols=85 Identities=9% Similarity=0.085 Sum_probs=44.8
Q ss_pred CCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCCCccccCCC-C-CCCCCChhhHHhccccCcCCCCccCCCccee
Q psy7735 19 KPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDT-G-LGAMAEVDTIKYGFVPNTIRKSTEPQDPNNF 96 (120)
Q Consensus 19 ~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~g~lacg~~-G-~g~m~~~~~I~~~v~~~~~~~t~E~iD~vR~ 96 (120)
.+|++++..-..-| .++.-...|++.|+.++-|+.- .+|.. . .....++++.++.+...+.. ....++|=+
T Consensus 19 p~vvliHG~~~~~~---~w~~~~~~L~~~g~~vi~~dl~--g~G~s~~~~~~~~~~~~~~~~l~~~i~~--l~~~~~v~l 91 (273)
T PLN02211 19 PHFVLIHGISGGSW---CWYKIRCLMENSGYKVTCIDLK--SAGIDQSDADSVTTFDEYNKPLIDFLSS--LPENEKVIL 91 (273)
T ss_pred CeEEEECCCCCCcC---cHHHHHHHHHhCCCEEEEeccc--CCCCCCCCcccCCCHHHHHHHHHHHHHh--cCCCCCEEE
Confidence 35899985433222 2344456677789998866631 11211 1 11223566655555443311 112467778
Q ss_pred eecC-CcHHHHHHHH
Q psy7735 97 VDNN-AGITEYSLTG 110 (120)
Q Consensus 97 isN~-SG~mg~~ia~ 110 (120)
+..- .|..+...|.
T Consensus 92 vGhS~GG~v~~~~a~ 106 (273)
T PLN02211 92 VGHSAGGLSVTQAIH 106 (273)
T ss_pred EEECchHHHHHHHHH
Confidence 8866 5666666654
No 58
>PRK00870 haloalkane dehalogenase; Provisional
Probab=32.45 E-value=1.8e+02 Score=22.21 Aligned_cols=36 Identities=17% Similarity=0.106 Sum_probs=24.3
Q ss_pred CCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCC
Q psy7735 18 SKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVS 56 (120)
Q Consensus 18 ~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~ 56 (120)
+.||++++.+.. .+..++..++.|.+.|+.++-|+.
T Consensus 46 ~~~lvliHG~~~---~~~~w~~~~~~L~~~gy~vi~~Dl 81 (302)
T PRK00870 46 GPPVLLLHGEPS---WSYLYRKMIPILAAAGHRVIAPDL 81 (302)
T ss_pred CCEEEEECCCCC---chhhHHHHHHHHHhCCCEEEEECC
Confidence 467999988622 223346677788777898886663
No 59
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=32.35 E-value=2.1e+02 Score=21.18 Aligned_cols=38 Identities=13% Similarity=0.152 Sum_probs=26.0
Q ss_pred cCCCCEEEEecCC--hhhhhChHHHHHHHHHHhCCcEEecCC
Q psy7735 16 DFSKPILFCPAMN--TKMWNHPITKSHINTLKSWGYEEIPCV 55 (120)
Q Consensus 16 ~~~~PvliaPaMn--~~M~~~P~~~~nl~~L~~~G~~vi~P~ 55 (120)
+.+.|||+++... ..+|. .+.+++..|.+.|+.|+-++
T Consensus 28 g~~~~ivllHG~~~~~~~~~--~~~~~~~~l~~~~~~vi~~D 67 (282)
T TIGR03343 28 GNGEAVIMLHGGGPGAGGWS--NYYRNIGPFVDAGYRVILKD 67 (282)
T ss_pred CCCCeEEEECCCCCchhhHH--HHHHHHHHHHhCCCEEEEEC
Confidence 4567899999763 45664 24466777766788888665
No 60
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=32.04 E-value=33 Score=26.13 Aligned_cols=23 Identities=26% Similarity=0.223 Sum_probs=19.5
Q ss_pred cceeeecCCcHHHHHHHHHHHHH
Q psy7735 93 PNNFVDNNAGITEYSLTGFLYFS 115 (120)
Q Consensus 93 ~vR~isN~SG~mg~~ia~~~~~~ 115 (120)
++.|+||.+|+....+++.+...
T Consensus 32 ~~~~~tN~~~~~~~~~~~~l~~~ 54 (236)
T TIGR01460 32 PVVFLTNNSSRSEEDYAEKLSSL 54 (236)
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999888877653
No 61
>PRK13835 conjugal transfer protein TrbH; Provisional
Probab=31.82 E-value=1e+02 Score=22.84 Aligned_cols=46 Identities=13% Similarity=0.347 Sum_probs=29.5
Q ss_pred CcchHHHHHHHhccCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEec
Q psy7735 3 LCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIP 53 (120)
Q Consensus 3 iaDnllt~~~~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~ 53 (120)
||+|.++.+.+-++..+-.+.. +..- +|.-+.=++.||.|||-|++
T Consensus 42 iA~D~vsqLae~~pPa~tt~~l---~q~~--d~Fg~aL~~aLr~~GYaVvt 87 (145)
T PRK13835 42 IAGDMVSRLAEQIGPGTTTIKL---KKDT--SPFGQALEAALKGWGYAVVT 87 (145)
T ss_pred HHHHHHHHHHHhcCCCceEEEE---eecC--cHHHHHHHHHHHhcCeEEee
Confidence 4667777776666543322222 2332 46666667778999999997
No 62
>PF08903 DUF1846: Domain of unknown function (DUF1846); InterPro: IPR014999 This group of proteins are functionally uncharacterised. ; PDB: 3BH1_B.
Probab=31.50 E-value=1.9e+02 Score=25.40 Aligned_cols=86 Identities=17% Similarity=0.172 Sum_probs=47.2
Q ss_pred HHhccCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEe--cCCCCcc-----ccCCCCCCCCCChhhHHhccccCcC
Q psy7735 12 LRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEI--PCVSKTL-----MCGDTGLGAMAEVDTIKYGFVPNTI 84 (120)
Q Consensus 12 ~~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi--~P~~g~l-----acg~~G~g~m~~~~~I~~~v~~~~~ 84 (120)
++.+|.-.--|+. +..-.+|+...=.++|+..|+.+. -|..|.- -+.++|.|+=
T Consensus 100 fr~~gl~V~sVVI----T~y~~q~~a~~F~~kLe~~gIkvy~Hy~i~GYP~dv~~IvSdeGyGkN--------------- 160 (491)
T PF08903_consen 100 FRSRGLYVGSVVI----TQYEGQPAADAFKNKLERLGIKVYRHYPIEGYPTDVDLIVSDEGYGKN--------------- 160 (491)
T ss_dssp HHHTT-EEEEEEE----ECE-T-HHHHHHHHHHHTTT-EEEEEE--TTTTT-HHHHSSTTTGGGS---------------
T ss_pred HHhcCceeeeEEE----EecCCCHHHHHHHHHHHHCCCcEEEecCcCCCCCCccceeCcccCCCC---------------
Confidence 5666544333333 344457887777888999998875 5665531 1334444443
Q ss_pred CCCccCCCcceeeecC---CcHHHHHHHHHHHHHhh
Q psy7735 85 RKSTEPQDPNNFVDNN---AGITEYSLTGFLYFSLR 117 (120)
Q Consensus 85 ~~t~E~iD~vR~isN~---SG~mg~~ia~~~~~~~~ 117 (120)
...|-=-|.=++|-| ||||+-+|-+-.+...|
T Consensus 161 -~YIeTtrpLVVVTAPGPGSGKlATCLSQlYHe~kr 195 (491)
T PF08903_consen 161 -DYIETTRPLVVVTAPGPGSGKLATCLSQLYHEHKR 195 (491)
T ss_dssp ------SSSEEEEE-SSTTS-HHHHHHHHHHHHHCT
T ss_pred -CceeccCCeEEEeCCCCCccHHHHHHHHHHHHHhc
Confidence 122333366678887 89999999987777655
No 63
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.27 E-value=2.6e+02 Score=22.16 Aligned_cols=65 Identities=15% Similarity=0.149 Sum_probs=41.8
Q ss_pred chHHHHHH-HhccCCCCEEEEecCChhhhhChHHHHHHHHH-HhCCcEEecCCCCccccCCCCCCCCCChhhHHhc
Q psy7735 5 DNLLTCIL-RAWDFSKPILFCPAMNTKMWNHPITKSHINTL-KSWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKYG 78 (120)
Q Consensus 5 Dnllt~~~-~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L-~~~G~~vi~P~~g~lacg~~G~g~m~~~~~I~~~ 78 (120)
-|++..+. .+.-.+..-+|+|+-++. .++++|+.. .+.|+.+..|.. .|.-+..+ -|..++.++.
T Consensus 66 PDl~~~L~e~~~~~~~~alIvp~~~~~-----g~rkqL~~~~~~~g~e~~~p~p---~C~Le~~~-~p~i~~F~e~ 132 (224)
T COG1810 66 PDLLLALPEKAAEGGVKALIVPAEPPE-----GLRKQLKEFCEELGVEFEAPEP---FCSLEPNE-NPHIDEFAER 132 (224)
T ss_pred ccHHHHHHHHHHhCCccEEEEecCCCh-----hHHHHHHHHhhhcceeeecCCc---cccCCCCC-ChHHHHHHHH
Confidence 34554442 222246778888987776 889889887 668999887764 45555555 4455555543
No 64
>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase. This model describes recently identified adenosine 5'-phosphosulfate (APS) reductase activity found in sulfate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulfate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster.
Probab=31.07 E-value=1.2e+02 Score=22.49 Aligned_cols=50 Identities=12% Similarity=0.037 Sum_probs=33.1
Q ss_pred CCcchHHHHHHHhccCCCCEEEEecCChhhhhChHHHHHHHHH-HhCCcE--EecCC
Q psy7735 2 GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTL-KSWGYE--EIPCV 55 (120)
Q Consensus 2 GiaDnllt~~~~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L-~~~G~~--vi~P~ 55 (120)
|+.|..++-++.-.....|++++ ..-+..|.|-+.++++ +.+|+. ++.|.
T Consensus 2 ~~~s~Vll~L~~~~~~~~~vifv----DTg~~FpET~~~~d~~~~~~~l~i~~~~~~ 54 (191)
T TIGR02055 2 GAEDVVLVDLAAKVRPDVKVFFL----DTGRLFKETYETIDQVRERYDILIDVLSPP 54 (191)
T ss_pred ChHHHHHHHHHHhcCCCCcEEEe----cCCCCCHHHHHHHHHHHHHhCCceEEEcCC
Confidence 45555556555444446777776 5566789999999999 457764 45554
No 65
>PF07368 DUF1487: Protein of unknown function (DUF1487); InterPro: IPR009961 This family consists of several uncharacterised proteins from Drosophila melanogaster. The function of this family is unknown.
Probab=30.49 E-value=59 Score=25.50 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=24.1
Q ss_pred CChhhhhChHHHHHHHHHHhCCcEEec
Q psy7735 27 MNTKMWNHPITKSHINTLKSWGYEEIP 53 (120)
Q Consensus 27 Mn~~M~~~P~~~~nl~~L~~~G~~vi~ 53 (120)
|+..-.+||.+.+++++|++.+..+|.
T Consensus 60 l~~~va~Hpny~rsl~~i~~l~~~~I~ 86 (215)
T PF07368_consen 60 LSPQVANHPNYLRSLKKIKCLNAKTIV 86 (215)
T ss_pred CChhhccCcHHHHHHHHHHhcCCeEEE
Confidence 678888999999999999999998773
No 66
>PF03730 Ku_C: Ku70/Ku80 C-terminal arm; InterPro: IPR005160 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the C-terminal arm. This alpha helical region embraces the beta-barrel domain IPR006164 from INTERPRO of the opposite subunit [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0006303 double-strand break repair via nonhomologous end joining; PDB: 1JEY_B 1JEQ_B 1RW2_A 3RZ9_B 3RZX_B.
Probab=30.40 E-value=37 Score=22.50 Aligned_cols=21 Identities=14% Similarity=0.385 Sum_probs=14.8
Q ss_pred cCChhhhhChHHHHHHHHHHh
Q psy7735 26 AMNTKMWNHPITKSHINTLKS 46 (120)
Q Consensus 26 aMn~~M~~~P~~~~nl~~L~~ 46 (120)
.|++..+.||++|++-+.|+.
T Consensus 4 ~y~P~~~~NP~LQ~hY~~L~a 24 (96)
T PF03730_consen 4 SYDPDKFPNPSLQRHYKCLQA 24 (96)
T ss_dssp S--CCCS--HHHHHHHHHHHH
T ss_pred CCCcCCcCCchHHHHHHHHHH
Confidence 478889999999999999864
No 67
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=28.63 E-value=1.2e+02 Score=23.94 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=27.6
Q ss_pred HHHHHhccCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEe
Q psy7735 9 TCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEI 52 (120)
Q Consensus 9 t~~~~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi 52 (120)
+++.++...++|++++|.- .++--+.|.+.|.+.|+-++
T Consensus 258 ~t~~Ea~~~g~P~l~ip~~-----~~~eQ~~na~~l~~~g~~~~ 296 (321)
T TIGR00661 258 SLISEALSLGKPLIVIPDL-----GQFEQGNNAVKLEDLGCGIA 296 (321)
T ss_pred HHHHHHHHcCCCEEEEcCC-----CcccHHHHHHHHHHCCCEEE
Confidence 3456666679999999953 23334678889988887654
No 68
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=28.60 E-value=81 Score=25.30 Aligned_cols=92 Identities=10% Similarity=0.064 Sum_probs=50.2
Q ss_pred CCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCCCccccCCCCCCCCCChhhHHhccccCcCCC--CccCCCcce
Q psy7735 18 SKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKYGFVPNTIRK--STEPQDPNN 95 (120)
Q Consensus 18 ~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~g~lacg~~G~g~m~~~~~I~~~v~~~~~~~--t~E~iD~vR 95 (120)
.-||+++= |.-+..+..+..=++.+.+||++||.|+.-.+. +.........-.++++++.+-+... ..-.+|=-|
T Consensus 16 ~yPVv~f~--~G~~~~~s~Ys~ll~hvAShGyIVV~~d~~~~~-~~~~~~~~~~~~~vi~Wl~~~L~~~l~~~v~~D~s~ 92 (259)
T PF12740_consen 16 TYPVVLFL--HGFLLINSWYSQLLEHVASHGYIVVAPDLYSIG-GPDDTDEVASAAEVIDWLAKGLESKLPLGVKPDFSK 92 (259)
T ss_pred CcCEEEEe--CCcCCCHHHHHHHHHHHHhCceEEEEecccccC-CCCcchhHHHHHHHHHHHHhcchhhccccccccccc
Confidence 45766653 444455666888889999999999999843221 1112222333455566654433111 111223222
Q ss_pred -eeecCC--cHHHHHHHHHH
Q psy7735 96 -FVDNNA--GITEYSLTGFL 112 (120)
Q Consensus 96 -~isN~S--G~mg~~ia~~~ 112 (120)
.|.=|| ||..+++|...
T Consensus 93 l~l~GHSrGGk~Af~~al~~ 112 (259)
T PF12740_consen 93 LALAGHSRGGKVAFAMALGN 112 (259)
T ss_pred eEEeeeCCCCHHHHHHHhhh
Confidence 234455 78888777654
No 69
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=28.58 E-value=1.6e+02 Score=23.83 Aligned_cols=35 Identities=9% Similarity=0.042 Sum_probs=28.9
Q ss_pred CCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEe
Q psy7735 18 SKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEI 52 (120)
Q Consensus 18 ~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi 52 (120)
+++++++...|..---|+.+++.++.|++.|+.+.
T Consensus 203 ~~~~~~~~h~dh~~Ei~d~~~~ai~~L~~~Gi~v~ 237 (321)
T TIGR03821 203 RLQTVLVVHINHANEIDAEVADALAKLRNAGITLL 237 (321)
T ss_pred CCcEEEEeeCCChHhCcHHHHHHHHHHHHcCCEEE
Confidence 57888888887665668999999999999998764
No 70
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=28.57 E-value=1.7e+02 Score=23.28 Aligned_cols=64 Identities=13% Similarity=0.135 Sum_probs=43.2
Q ss_pred HHhccCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCCCccccCCCCCCCCCChhhHHhccccCc
Q psy7735 12 LRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKYGFVPNT 83 (120)
Q Consensus 12 ~~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~g~lacg~~G~g~m~~~~~I~~~v~~~~ 83 (120)
+.+++.++=.++.| |-.+..|+-.+.|+..|+.|++-..=. --++.-.||.++ ..+++...+.+
T Consensus 113 L~al~a~ri~vlTP------Y~~evn~~e~ef~~~~Gfeiv~~~~Lg-i~dn~eigr~~P-~~~y~lAk~~~ 176 (238)
T COG3473 113 LNALGAQRISVLTP------YIDEVNQREIEFLEANGFEIVDFKGLG-ITDNLEIGRQEP-WAVYRLAKEVF 176 (238)
T ss_pred HHhhCcceEEEecc------chhhhhhHHHHHHHhCCeEEEEeeccC-CcccchhcccCh-HHHHHHHHHhc
Confidence 66777777788888 446788999999999999998543211 123567789954 45555444443
No 71
>PF02754 CCG: Cysteine-rich domain; InterPro: IPR004017 This domain is usually found in two copies per protein. It contains up to four conserved cysteines. The group includes proteins characterised as: heterodisulphide reductase, subunit B (HrdB); succinate dehydrogenase, subunit C (SdhC, 1.3.99.1 from EC); Fe-S oxidoreductase; glycerol-3-phosphate dehydrogenase subunit C (Anaerobic GlpC, 1.1.99.5 from EC); and glycolate oxidase iron-sulphur subunit (GlcF) [].
Probab=28.25 E-value=96 Score=18.67 Aligned_cols=35 Identities=23% Similarity=0.309 Sum_probs=26.2
Q ss_pred ChHHHHHHHHH-HhCCcEEecCCCCccccCCCCCCCC
Q psy7735 34 HPITKSHINTL-KSWGYEEIPCVSKTLMCGDTGLGAM 69 (120)
Q Consensus 34 ~P~~~~nl~~L-~~~G~~vi~P~~g~lacg~~G~g~m 69 (120)
.|.+.+.+..| +..|+.+..+ ....=||..|....
T Consensus 14 ~~~~~~~~~~l~~~~g~~~~~~-~~~~CCG~~~~~~~ 49 (85)
T PF02754_consen 14 YPEVEKALRKLLNKLGIEVVIP-ENQQCCGAPGYFAG 49 (85)
T ss_pred ChHHHHHHHHHHHHcCceeeec-CCCCCCChHHHHcC
Confidence 67788888888 7799999877 55666887665433
No 72
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=28.09 E-value=1.1e+02 Score=25.36 Aligned_cols=52 Identities=12% Similarity=0.066 Sum_probs=34.2
Q ss_pred CCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCCCccccCCCCCCCCCChhhHHhccccCc
Q psy7735 17 FSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVDTIKYGFVPNT 83 (120)
Q Consensus 17 ~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~g~lacg~~G~g~m~~~~~I~~~v~~~~ 83 (120)
.++|.+++|.-... ..| --.|-+.|.+.|.-.+=++. + ..++++.+.|.+.+
T Consensus 271 ~g~P~IliP~p~~~-~~~--Q~~NA~~l~~~gaa~~i~~~------~------lt~~~l~~~i~~l~ 322 (357)
T COG0707 271 LGVPAILVPYPPGA-DGH--QEYNAKFLEKAGAALVIRQS------E------LTPEKLAELILRLL 322 (357)
T ss_pred hCCCEEEeCCCCCc-cch--HHHHHHHHHhCCCEEEeccc------c------CCHHHHHHHHHHHh
Confidence 48999999976665 333 23388999888776543332 1 15778877776655
No 73
>PRK03592 haloalkane dehalogenase; Provisional
Probab=27.79 E-value=2.2e+02 Score=21.53 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=22.4
Q ss_pred cCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCC
Q psy7735 16 DFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCV 55 (120)
Q Consensus 16 ~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~ 55 (120)
|.+.|||+++....+. -.++..+..|.+.+ +|+-|+
T Consensus 25 G~g~~vvllHG~~~~~---~~w~~~~~~L~~~~-~via~D 60 (295)
T PRK03592 25 GEGDPIVFLHGNPTSS---YLWRNIIPHLAGLG-RCLAPD 60 (295)
T ss_pred CCCCEEEEECCCCCCH---HHHHHHHHHHhhCC-EEEEEc
Confidence 4467899998543222 22345667787666 777665
No 74
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=27.77 E-value=1.4e+02 Score=25.55 Aligned_cols=50 Identities=20% Similarity=0.256 Sum_probs=35.2
Q ss_pred CCcch--HHHHHHHhccCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEec
Q psy7735 2 GLCDN--LLTCILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIP 53 (120)
Q Consensus 2 GiaDn--llt~~~~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~ 53 (120)
|+.|. ++..+-.+. ++||.-+|.|-++.---...+.=.+.+++.|+.+++
T Consensus 231 G~~~~~~~~~~L~~~~--g~~v~E~ptlPPSv~G~RL~~aL~~~~~~~Gg~il~ 282 (419)
T TIGR03378 231 GLGDGLELLRELEQAT--GLTLCELPTMPPSLLGIRLEEALKHRFEQLGGVMLP 282 (419)
T ss_pred CCCChHHHHHHHHHHH--CCCEEeCCCCCCCCcHHHHHHHHHHHHHHCCCEEEE
Confidence 66663 344554555 899999999999988665555544566888877663
No 75
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=27.64 E-value=1.7e+02 Score=23.49 Aligned_cols=33 Identities=18% Similarity=0.367 Sum_probs=22.9
Q ss_pred CCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCC
Q psy7735 19 KPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCV 55 (120)
Q Consensus 19 ~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~ 55 (120)
.||++++.+.... -.+..++..|.+ ++.|+-|+
T Consensus 89 p~lvllHG~~~~~---~~w~~~~~~L~~-~~~via~D 121 (360)
T PLN02679 89 PPVLLVHGFGASI---PHWRRNIGVLAK-NYTVYAID 121 (360)
T ss_pred CeEEEECCCCCCH---HHHHHHHHHHhc-CCEEEEEC
Confidence 6799998765443 245677788865 78888666
No 76
>PRK10349 carboxylesterase BioH; Provisional
Probab=27.61 E-value=2.5e+02 Score=20.61 Aligned_cols=81 Identities=11% Similarity=0.200 Sum_probs=42.9
Q ss_pred ccCCC-CEEEEec--CChhhhhChHHHHHHHHHHhCCcEEecCCCCccccCCC-CCCCCCChhhHHhccccCcCCCCccC
Q psy7735 15 WDFSK-PILFCPA--MNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDT-GLGAMAEVDTIKYGFVPNTIRKSTEP 90 (120)
Q Consensus 15 ~~~~~-PvliaPa--Mn~~M~~~P~~~~nl~~L~~~G~~vi~P~~g~lacg~~-G~g~m~~~~~I~~~v~~~~~~~t~E~ 90 (120)
.|.+. |||+++. .+..+| +..++.|++ .+.|+-|+.- -+|.. +.. ..+.+++++.+.. ..
T Consensus 9 ~G~g~~~ivllHG~~~~~~~w-----~~~~~~L~~-~~~vi~~Dl~--G~G~S~~~~-~~~~~~~~~~l~~-------~~ 72 (256)
T PRK10349 9 KGQGNVHLVLLHGWGLNAEVW-----RCIDEELSS-HFTLHLVDLP--GFGRSRGFG-ALSLADMAEAVLQ-------QA 72 (256)
T ss_pred cCCCCCeEEEECCCCCChhHH-----HHHHHHHhc-CCEEEEecCC--CCCCCCCCC-CCCHHHHHHHHHh-------cC
Confidence 34455 4999996 444555 556677754 3666644420 01111 111 1255666665543 23
Q ss_pred CCcceeeecC-CcHHHHHHHHH
Q psy7735 91 QDPNNFVDNN-AGITEYSLTGF 111 (120)
Q Consensus 91 iD~vR~isN~-SG~mg~~ia~~ 111 (120)
++++-+|..- .|..+..+|..
T Consensus 73 ~~~~~lvGhS~Gg~ia~~~a~~ 94 (256)
T PRK10349 73 PDKAIWLGWSLGGLVASQIALT 94 (256)
T ss_pred CCCeEEEEECHHHHHHHHHHHh
Confidence 5677777755 46666666543
No 77
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=26.85 E-value=60 Score=23.96 Aligned_cols=22 Identities=23% Similarity=0.557 Sum_probs=19.6
Q ss_pred hhhhhChHHHHHHHHHHhCCcE
Q psy7735 29 TKMWNHPITKSHINTLKSWGYE 50 (120)
Q Consensus 29 ~~M~~~P~~~~nl~~L~~~G~~ 50 (120)
...|+||.+|+=+++|++.|+-
T Consensus 150 ~~~~~~~~~~~~~~~L~~~Gvd 171 (179)
T PF06757_consen 150 NALWASPEFQRLLNELRENGVD 171 (179)
T ss_pred HHHHcCHHHHHHHHHHHHcCCC
Confidence 5689999999999999999974
No 78
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=26.73 E-value=2.2e+02 Score=19.74 Aligned_cols=85 Identities=9% Similarity=0.085 Sum_probs=39.9
Q ss_pred CCC-EEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCCCccccCCCCCC-CCCChhhHHhccccCcCCCCccCCCcce
Q psy7735 18 SKP-ILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLG-AMAEVDTIKYGFVPNTIRKSTEPQDPNN 95 (120)
Q Consensus 18 ~~P-vliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~g~lacg~~G~g-~m~~~~~I~~~v~~~~~~~t~E~iD~vR 95 (120)
++| +++++..-.. +..+...++.|+ .|+.|+-++. .-||..... .-.++++.++.+...+- ....++|=
T Consensus 12 ~~~~li~~hg~~~~---~~~~~~~~~~l~-~~~~v~~~d~--~G~G~s~~~~~~~~~~~~~~~~~~~i~---~~~~~~v~ 82 (251)
T TIGR02427 12 GAPVLVFINSLGTD---LRMWDPVLPALT-PDFRVLRYDK--RGHGLSDAPEGPYSIEDLADDVLALLD---HLGIERAV 82 (251)
T ss_pred CCCeEEEEcCcccc---hhhHHHHHHHhh-cccEEEEecC--CCCCCCCCCCCCCCHHHHHHHHHHHHH---HhCCCceE
Confidence 355 5666643222 222344455565 4788776553 112332211 12255665555544331 12345565
Q ss_pred eeecC-CcHHHHHHHHH
Q psy7735 96 FVDNN-AGITEYSLTGF 111 (120)
Q Consensus 96 ~isN~-SG~mg~~ia~~ 111 (120)
.+.-- .|.++..+|..
T Consensus 83 liG~S~Gg~~a~~~a~~ 99 (251)
T TIGR02427 83 FCGLSLGGLIAQGLAAR 99 (251)
T ss_pred EEEeCchHHHHHHHHHH
Confidence 55543 36666666654
No 79
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=26.62 E-value=62 Score=18.87 Aligned_cols=25 Identities=12% Similarity=0.048 Sum_probs=19.1
Q ss_pred hhChHHHHHHHHHHhCCcEEecCCC
Q psy7735 32 WNHPITKSHINTLKSWGYEEIPCVS 56 (120)
Q Consensus 32 ~~~P~~~~nl~~L~~~G~~vi~P~~ 56 (120)
...+++.+.+++|.+.|++.-.+..
T Consensus 33 ~~~~~vs~~v~~L~~~Glv~r~~~~ 57 (62)
T PF12802_consen 33 ISKSTVSRIVKRLEKKGLVERERDP 57 (62)
T ss_dssp S-HHHHHHHHHHHHHTTSEEEEE-S
T ss_pred cCHHHHHHHHHHHHHCCCEEEeCCC
Confidence 4568899999999999998765543
No 80
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=26.17 E-value=98 Score=18.58 Aligned_cols=25 Identities=12% Similarity=0.062 Sum_probs=20.1
Q ss_pred hChHHHHHHHHHHhCCcEEecCCCC
Q psy7735 33 NHPITKSHINTLKSWGYEEIPCVSK 57 (120)
Q Consensus 33 ~~P~~~~nl~~L~~~G~~vi~P~~g 57 (120)
..+.+++.++.|.+.|+....|..|
T Consensus 37 sr~tvr~al~~L~~~g~i~~~~~~G 61 (64)
T PF00392_consen 37 SRTTVREALRRLEAEGLIERRPGRG 61 (64)
T ss_dssp -HHHHHHHHHHHHHTTSEEEETTTE
T ss_pred CCcHHHHHHHHHHHCCcEEEECCce
Confidence 3567899999999999988777654
No 81
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=25.90 E-value=1.1e+02 Score=17.66 Aligned_cols=22 Identities=14% Similarity=0.090 Sum_probs=17.0
Q ss_pred ChHHHHHHHHHHhCCcEEecCC
Q psy7735 34 HPITKSHINTLKSWGYEEIPCV 55 (120)
Q Consensus 34 ~P~~~~nl~~L~~~G~~vi~P~ 55 (120)
-+.+.+.+++|++.|+....|.
T Consensus 39 ~~~v~~~l~~L~~~G~i~~~~~ 60 (66)
T cd07377 39 RTTVREALRELEAEGLVERRPG 60 (66)
T ss_pred HHHHHHHHHHHHHCCCEEecCC
Confidence 4677889999999998654443
No 82
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=25.69 E-value=1.1e+02 Score=24.28 Aligned_cols=32 Identities=19% Similarity=0.163 Sum_probs=23.0
Q ss_pred EEEecCChhhhhChHHHHHHHHHHhCCcEEecCC
Q psy7735 22 LFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCV 55 (120)
Q Consensus 22 liaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~ 55 (120)
+|+|+-...-. ..+++-++.|+++|+.|+.+.
T Consensus 3 iiapSs~~~~~--~~~~~~~~~L~~~G~~v~~~~ 34 (282)
T cd07025 3 IVAPSSPIDEE--ERLERAIARLESLGLEVVVGP 34 (282)
T ss_pred EEeCCCCCCcH--HHHHHHHHHHHhCCCEEEecc
Confidence 57786433333 778888999999999977443
No 83
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=25.30 E-value=63 Score=28.50 Aligned_cols=28 Identities=29% Similarity=0.413 Sum_probs=19.6
Q ss_pred EecCChhhhhChHHHHHHHHHHhCCcEEe
Q psy7735 24 CPAMNTKMWNHPITKSHINTLKSWGYEEI 52 (120)
Q Consensus 24 aPaMn~~M~~~P~~~~nl~~L~~~G~~vi 52 (120)
.|+-|+.||+ +.+-++|..|.+.|-.+.
T Consensus 176 sP~~np~~W~-~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 176 APAKNPDMWS-PNLFNALARLARPGATLA 203 (662)
T ss_pred CCccChhhcc-HHHHHHHHHHhCCCCEEE
Confidence 6999999995 555666777755554443
No 84
>KOG3349|consensus
Probab=25.15 E-value=1.7e+02 Score=22.26 Aligned_cols=39 Identities=18% Similarity=0.258 Sum_probs=26.5
Q ss_pred HHHhccCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEe
Q psy7735 11 ILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEI 52 (120)
Q Consensus 11 ~~~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi 52 (120)
++..+..+||.++++ |....+|-+ ++=-++|.+.||.+-
T Consensus 93 ~letL~l~KPlivVv--Nd~LMDNHQ-~ELA~qL~~egyL~~ 131 (170)
T KOG3349|consen 93 CLETLRLGKPLIVVV--NDSLMDNHQ-LELAKQLAEEGYLYY 131 (170)
T ss_pred HHHHHHcCCCEEEEe--ChHhhhhHH-HHHHHHHHhcCcEEE
Confidence 344444589999987 777777744 233456888998764
No 85
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=25.03 E-value=1.1e+02 Score=19.08 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=18.1
Q ss_pred ChHHHHHHHHHHhCCcEEecCC
Q psy7735 34 HPITKSHINTLKSWGYEEIPCV 55 (120)
Q Consensus 34 ~P~~~~nl~~L~~~G~~vi~P~ 55 (120)
...++++|+.|++.|+.--.|-
T Consensus 40 ~~tv~~~L~~Le~kG~I~r~~~ 61 (65)
T PF01726_consen 40 TSTVQRHLKALERKGYIRRDPG 61 (65)
T ss_dssp HHHHHHHHHHHHHTTSEEEGCC
T ss_pred hHHHHHHHHHHHHCcCccCCCC
Confidence 5678999999999999766554
No 86
>COG2345 Predicted transcriptional regulator [Transcription]
Probab=24.88 E-value=89 Score=24.50 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=22.7
Q ss_pred hChHHHHHHHHHHhCCcEEecCCCCccccCCCCCCCCC
Q psy7735 33 NHPITKSHINTLKSWGYEEIPCVSKTLMCGDTGLGAMA 70 (120)
Q Consensus 33 ~~P~~~~nl~~L~~~G~~vi~P~~g~lacg~~G~g~m~ 70 (120)
...++++||+.|.+.|+.... .. ..|.||.+
T Consensus 38 s~~avR~HL~~Le~~Glv~~~-~~------~~g~GRP~ 68 (218)
T COG2345 38 SPMAVRRHLDDLEAEGLVEVE-RQ------QGGRGRPA 68 (218)
T ss_pred CHHHHHHHHHHHHhCcceeee-ec------cCCCCCCc
Confidence 457899999999999987665 11 34667663
No 87
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=24.15 E-value=48 Score=25.53 Aligned_cols=21 Identities=38% Similarity=0.377 Sum_probs=16.2
Q ss_pred CcceeeecCCcHHHHHHHHHH
Q psy7735 92 DPNNFVDNNAGITEYSLTGFL 112 (120)
Q Consensus 92 D~vR~isN~SG~mg~~ia~~~ 112 (120)
-+++|+||+||++-..++..+
T Consensus 34 ~~~~~~Tnn~~r~~~~~~~~l 54 (249)
T TIGR01457 34 IPYLFVTNNSTRTPESVAEML 54 (249)
T ss_pred CeEEEEeCCCCCCHHHHHHHH
Confidence 579999999887777666544
No 88
>PRK13663 hypothetical protein; Provisional
Probab=24.01 E-value=2.5e+02 Score=24.64 Aligned_cols=86 Identities=17% Similarity=0.165 Sum_probs=53.0
Q ss_pred HHhccCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEe--cCCCCcc-----ccCCCCCCCCCChhhHHhccccCcC
Q psy7735 12 LRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEI--PCVSKTL-----MCGDTGLGAMAEVDTIKYGFVPNTI 84 (120)
Q Consensus 12 ~~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi--~P~~g~l-----acg~~G~g~m~~~~~I~~~v~~~~~ 84 (120)
++.+|.-.--++. +..-.+|+...=.++|+..|+.|. -|..|.- --.++|.|+=
T Consensus 101 fr~~gl~V~sVVI----Tqy~~qp~a~~F~~rLe~~GIkvy~Hy~i~GYP~dv~~IVSdeGyGkN--------------- 161 (493)
T PRK13663 101 FRELGLYVGSVVI----TQYDGQPAADAFRNRLERLGIKVYRHYPIKGYPTDVDHIVSDEGYGKN--------------- 161 (493)
T ss_pred HHhcCceeeeEEE----EecCCChHHHHHHHHHHHCCCceEEecCcCCCCCCCCceECcCCCCCC---------------
Confidence 5666544433333 334456777777788988998775 4555421 1224444443
Q ss_pred CCCccCCCcceeeecC---CcHHHHHHHHHHHHHhh
Q psy7735 85 RKSTEPQDPNNFVDNN---AGITEYSLTGFLYFSLR 117 (120)
Q Consensus 85 ~~t~E~iD~vR~isN~---SG~mg~~ia~~~~~~~~ 117 (120)
...|-=-|.=++|-| ||||+-+|-+-.+...|
T Consensus 162 -~yIeTtrpLVVVTAPGPGSGKlATCLSQlYhe~kr 196 (493)
T PRK13663 162 -DYIETTRPLVVVTAPGPGSGKLATCLSQLYHDQKR 196 (493)
T ss_pred -CceeccCCeEEEeCCCCCccHHHHHHHHHHHHhhc
Confidence 122333466678887 89999999988777665
No 89
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=23.90 E-value=97 Score=22.32 Aligned_cols=21 Identities=24% Similarity=0.612 Sum_probs=17.6
Q ss_pred hhChHHHHHHHHHHhCCcEEe
Q psy7735 32 WNHPITKSHINTLKSWGYEEI 52 (120)
Q Consensus 32 ~~~P~~~~nl~~L~~~G~~vi 52 (120)
|-||-+.+-+++|++.|+.|+
T Consensus 27 ~~~~~~~~a~~~l~~~G~~iv 47 (157)
T smart00775 27 WTHPGVAKLYRDIQNNGYKIL 47 (157)
T ss_pred cCCHHHHHHHHHHHHcCCeEE
Confidence 778888888888888888764
No 90
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=23.60 E-value=1e+02 Score=17.35 Aligned_cols=18 Identities=11% Similarity=0.172 Sum_probs=14.4
Q ss_pred hChHHHHHHHHHHhCCcE
Q psy7735 33 NHPITKSHINTLKSWGYE 50 (120)
Q Consensus 33 ~~P~~~~nl~~L~~~G~~ 50 (120)
..+.+.+++++|.+.|+.
T Consensus 30 s~~tv~~~l~~L~~~g~I 47 (48)
T PF13412_consen 30 SRSTVNRYLKKLEEKGLI 47 (48)
T ss_dssp -HHHHHHHHHHHHHTTSE
T ss_pred CHHHHHHHHHHHHHCcCc
Confidence 457889999999998874
No 91
>PF14502 HTH_41: Helix-turn-helix domain
Probab=23.25 E-value=1.1e+02 Score=18.54 Aligned_cols=20 Identities=10% Similarity=0.117 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhCCcEEecCC
Q psy7735 36 ITKSHINTLKSWGYEEIPCV 55 (120)
Q Consensus 36 ~~~~nl~~L~~~G~~vi~P~ 55 (120)
.+|..++.|++.|.+.+++.
T Consensus 22 tiQ~Alk~Le~~gaI~Le~r 41 (48)
T PF14502_consen 22 TIQNALKFLEENGAIKLESR 41 (48)
T ss_pred HHHHHHHHHHHCCcEEeeec
Confidence 57999999999999988766
No 92
>COG2147 RPL19A Ribosomal protein L19E [Translation, ribosomal structure and biogenesis]
Probab=22.57 E-value=87 Score=23.33 Aligned_cols=40 Identities=15% Similarity=0.067 Sum_probs=31.0
Q ss_pred CCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCCCc
Q psy7735 18 SKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKT 58 (120)
Q Consensus 18 ~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~g~ 58 (120)
...|-|-|.-- .-.+..+|++.+..|-+.|++...|.-|.
T Consensus 19 ~~Rvwidp~~~-eei~~A~TR~dIr~LIk~g~I~~k~~kg~ 58 (150)
T COG2147 19 ENRVWIDPNEI-EEIASAITREDIRALIKDGVIKAKPKKGI 58 (150)
T ss_pred cceeeeChHHH-HHHHHhhhHHHHHHHHHCCCeeecccccc
Confidence 35677777432 33457889999999999999999999764
No 93
>PF02807 ATP-gua_PtransN: ATP:guanido phosphotransferase, N-terminal domain; InterPro: IPR022413 This entry represents the N-terminal domain of ATP:guanido phosphotransferase, which has an all-alpha fold consisting of an irregular array of 6 short helices []. ATP:guanido phosphotransferases are a family of structurally and functionally related enzymes [, ] that reversibly catalyse the transfer of phosphate between ATP and various phosphogens. The enzymes belonging to this family include: Glycocyamine kinase (2.7.3.1 from EC), which catalyses the transfer of phosphate from ATP to guanidoacetate. Arginine kinase (2.7.3.3 from EC), which catalyses the transfer of phosphate from ATP to arginine. Taurocyamine kinase (2.7.3.4 from EC), an annelid-specific enzyme that catalyses the transfer of phosphate from ATP to taurocyamine. Lombricine kinase (2.7.3.5 from EC), an annelid-specific enzyme that catalyses the transfer of phosphate from ATP to lombricine. Smc74, a cercaria-specific enzyme from Schistosoma mansoni []. Creatine kinase (2.7.3.2 from EC) (CK) [, ], which catalyses the reversible transfer of high energy phosphate from ATP to creatine, generating phosphocreatine and ADP. Creatine kinase plays an important role in energy metabolism of vertebrates. There are at least four different, but very closely related, forms of CK. Two isozymes, M (muscle) and B (brain), are cytosolic, while the other two are mitochondrial. In sea urchins there is a flagellar isozyme, which consists of the triplication of a CK-domain. A cysteine residue is implicated in the catalytic activity of these enzymes and the region around this active site residue is highly conserved.; GO: 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups; PDB: 1U6R_B 2CRK_A 2J1Q_A 1QH4_C 1QK1_F 2GL6_F 3L2F_M 3L2D_D 3L2G_B 3L2E_B ....
Probab=22.40 E-value=78 Score=20.73 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=16.2
Q ss_pred eecCCcHHHHHHHHHHHHHhhc
Q psy7735 97 VDNNAGITEYSLTGFLYFSLRD 118 (120)
Q Consensus 97 isN~SG~mg~~ia~~~~~~~~~ 118 (120)
+||++..|...|-.++|..|++
T Consensus 3 l~~~~sl~~K~LT~e~y~~lk~ 24 (76)
T PF02807_consen 3 LSKHNSLLAKHLTPEVYEKLKD 24 (76)
T ss_dssp -TT-BBHHHHH--HHHHHHHTT
T ss_pred cccccCHHHHhCCHHHHHHHhc
Confidence 4677889999999999999986
No 94
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=22.21 E-value=3e+02 Score=23.46 Aligned_cols=62 Identities=23% Similarity=0.353 Sum_probs=37.3
Q ss_pred cchHHH-HHHHhccC---CCCEEEEecCChhhhhChHHHHHHHHHHhCCcEE--ecCCCCccccCCCCCCCCCChhhHHh
Q psy7735 4 CDNLLT-CILRAWDF---SKPILFCPAMNTKMWNHPITKSHINTLKSWGYEE--IPCVSKTLMCGDTGLGAMAEVDTIKY 77 (120)
Q Consensus 4 aDnllt-~~~~a~~~---~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~v--i~P~~g~lacg~~G~g~m~~~~~I~~ 77 (120)
+||++. .++.+... ++-|++ ..-+||++.+.++.|+..|+.| ++|.. .|.. +++++-+
T Consensus 73 snNlaI~g~~~a~~~~~~~~HIIt------s~iEH~aVl~~~~~Le~~g~~Vtyl~V~~---------~G~v-~~e~L~~ 136 (386)
T COG1104 73 SNNLAIKGAALAYRNAQKGKHIIT------SAIEHPAVLNTCRYLERQGFEVTYLPVDS---------NGLV-DLEQLEE 136 (386)
T ss_pred HHHHHHHhhHHhhhcccCCCeEEE------cccccHHHHHHHHHHHhcCCeEEEeCCCC---------CCeE-cHHHHHH
Confidence 467653 44555532 334443 3468999999999997667654 55552 2333 5666666
Q ss_pred cccc
Q psy7735 78 GFVP 81 (120)
Q Consensus 78 ~v~~ 81 (120)
.+..
T Consensus 137 al~~ 140 (386)
T COG1104 137 ALRP 140 (386)
T ss_pred hcCC
Confidence 5543
No 95
>PF13730 HTH_36: Helix-turn-helix domain
Probab=21.96 E-value=82 Score=18.13 Aligned_cols=17 Identities=18% Similarity=0.270 Sum_probs=14.2
Q ss_pred hChHHHHHHHHHHhCCc
Q psy7735 33 NHPITKSHINTLKSWGY 49 (120)
Q Consensus 33 ~~P~~~~nl~~L~~~G~ 49 (120)
....+++.++.|++.|+
T Consensus 38 s~~Tv~~~i~~L~~~G~ 54 (55)
T PF13730_consen 38 SRRTVQRAIKELEEKGL 54 (55)
T ss_pred CHHHHHHHHHHHHHCcC
Confidence 35678999999999886
No 96
>PRK09344 phosphoenolpyruvate carboxykinase; Provisional
Probab=21.56 E-value=2.8e+02 Score=24.60 Aligned_cols=98 Identities=15% Similarity=0.137 Sum_probs=62.8
Q ss_pred CCCEEEEecCChhhhhChHHHHHH--HHHHhCCcEEecCCCCccccCCCCCCCCCChh---hHHhccccCc---------
Q psy7735 18 SKPILFCPAMNTKMWNHPITKSHI--NTLKSWGYEEIPCVSKTLMCGDTGLGAMAEVD---TIKYGFVPNT--------- 83 (120)
Q Consensus 18 ~~PvliaPaMn~~M~~~P~~~~nl--~~L~~~G~~vi~P~~g~lacg~~G~g~m~~~~---~I~~~v~~~~--------- 83 (120)
..+.+..+.=|+-|-.||....++ ++|++.|+.+--=-.|.. .|..|.|+--+.+ .|++++.+-.
T Consensus 384 p~~tfs~cFg~PF~p~~p~~ya~~L~~kl~~~~~~vylvNTGw~-GG~~g~g~ri~~~~Traii~ai~~G~l~~~~~~~~ 462 (526)
T PRK09344 384 PQPTFSTCFGAPFLPLHPTVYAELLGERIKAHGAKVYLVNTGWT-GGPYGTGKRISIKYTRAIINAILDGSLDNAETTTD 462 (526)
T ss_pred CCceeecccCCCCcCCCHHHHHHHHHHHHHHcCCCEEEEecccc-cCCCCCCccCCHHHHHHHHHHHhcCCccCCCceeC
Confidence 346667777788899999888887 778888876532122211 2355666322333 4444443211
Q ss_pred -----------CCCCccCCCcceeeecC-C-cHHHHHHHHHHHHHh
Q psy7735 84 -----------IRKSTEPQDPNNFVDNN-A-GITEYSLTGFLYFSL 116 (120)
Q Consensus 84 -----------~~~t~E~iD~vR~isN~-S-G~mg~~ia~~~~~~~ 116 (120)
-|--.|.+||.+..++. . .++...||+++...+
T Consensus 463 p~fg~~vP~~~~gv~~~~l~P~~~w~d~~~y~~~a~~La~~f~~nf 508 (526)
T PRK09344 463 PIFGLAVPTSVPGVDSEILDPRNTWADKAAYDEKAKKLARLFRENF 508 (526)
T ss_pred CccCccCCCcCCCCChHhcChhhccCCHHHHHHHHHHHHHHHHHHH
Confidence 12246789999999998 4 899999998887655
No 97
>PF08602 Mgr1: Mgr1-like, i-AAA protease complex subunit; InterPro: IPR013911 The Saccharomyces cerevisiae (Baker's yeast) Mgr1 protein has been shown to be required for mitochondrial viability in yeast lacking mitochondrial DNA. It is a mitochondrial inner membrane protein, which interacts with Yme1 and is a new subunit of the i-AAA protease complex [, ].
Probab=21.53 E-value=91 Score=26.41 Aligned_cols=28 Identities=18% Similarity=0.118 Sum_probs=23.1
Q ss_pred CccCCCcceeeecC--Cc----------HHHHHHHHHHHH
Q psy7735 87 STEPQDPNNFVDNN--AG----------ITEYSLTGFLYF 114 (120)
Q Consensus 87 t~E~iD~vR~isN~--SG----------~mg~~ia~~~~~ 114 (120)
.+|=|||-+|.--- || |.+.||||++.+
T Consensus 170 yhegidptk~kvkd~~sg~~~s~n~pevkqsval~Raq~e 209 (363)
T PF08602_consen 170 YHEGIDPTKIKVKDAMSGNPLSTNIPEVKQSVALVRAQAE 209 (363)
T ss_pred HhcCCCcceeEeeecCCCCcccCCcHHHHHHHHHHHHHHH
Confidence 79999999986533 45 999999999875
No 98
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=21.41 E-value=1.9e+02 Score=23.63 Aligned_cols=46 Identities=11% Similarity=0.114 Sum_probs=29.4
Q ss_pred CCEEEEecCChhhhhChHHHHHHHHHHhCCcEEecCCCCccccCCCC
Q psy7735 19 KPILFCPAMNTKMWNHPITKSHINTLKSWGYEEIPCVSKTLMCGDTG 65 (120)
Q Consensus 19 ~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~~g~lacg~~G 65 (120)
..|+++|.--.+.....+.+.-++.|+..|+.|+-|. +..=||.-.
T Consensus 162 ~~V~~f~gC~~~~~~~~~~~a~v~vL~~~G~~v~~~~-~~~CCG~p~ 207 (397)
T TIGR03379 162 RQVAYFHGCYVNYNHPQLGKDLVKVLNAMNIGVQLLE-KEKCCGVPL 207 (397)
T ss_pred CcEEEeCCcccccCChHHHHHHHHHHHHCCcEEEeCC-CCCccCccH
Confidence 4688888643333333444555666799999998764 346677633
No 99
>COG3526 Uncharacterized protein conserved in bacteria [Posttranslational modification, protein turnover, chaperones]
Probab=21.36 E-value=1.6e+02 Score=20.14 Aligned_cols=54 Identities=15% Similarity=0.239 Sum_probs=35.3
Q ss_pred HHHHHHH-HhCCcEEecCCCCcc---ccCC------CCCCCCCChhhHHhccccCcCCCCccCCCcceeeec
Q psy7735 38 KSHINTL-KSWGYEEIPCVSKTL---MCGD------TGLGAMAEVDTIKYGFVPNTIRKSTEPQDPNNFVDN 99 (120)
Q Consensus 38 ~~nl~~L-~~~G~~vi~P~~g~l---acg~------~G~g~m~~~~~I~~~v~~~~~~~t~E~iD~vR~isN 99 (120)
|+-+.+. .+.|.+-+.|..|-+ .|.. .-.|.+|+...+-..| |.-|||-|-+.-
T Consensus 27 QElL~TF~~dlgeV~L~PgTGG~FeI~~dg~~iWeRKrdGGFP~ak~LKQrv--------RD~idPeRDLGH 90 (99)
T COG3526 27 QELLSTFADDLGEVALIPGTGGVFEITCDGVLIWERKRDGGFPEAKVLKQRV--------RDLIDPERDLGH 90 (99)
T ss_pred HHHHHHHHhhhheEEEecCCCceEEEEECCEEEEEeeccCCCCchHHHHHHH--------HhhcCcccccCC
Confidence 4445555 346766677776633 4644 2358899988776665 667888887764
No 100
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=20.99 E-value=1e+02 Score=22.44 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=19.2
Q ss_pred cceeeecC-CcHHHHHHHHHHHHHh
Q psy7735 93 PNNFVDNN-AGITEYSLTGFLYFSL 116 (120)
Q Consensus 93 ~vR~isN~-SG~mg~~ia~~~~~~~ 116 (120)
|-||+++. .|-||+++.-++-.+|
T Consensus 38 ~~~~~~~~~~g~mG~~lp~aiGa~l 62 (177)
T cd02010 38 PNTCLISNGLATMGVALPGAIGAKL 62 (177)
T ss_pred CCCEEeCCCChhhhhHHHHHHHHHH
Confidence 56898877 5999999988776665
No 101
>PLN03220 uncharacterized protein; Provisional
Probab=20.80 E-value=1.3e+02 Score=21.03 Aligned_cols=28 Identities=25% Similarity=0.548 Sum_probs=23.2
Q ss_pred CCEEEEecCChhhhhChHHHHHHHHH-HhCCc
Q psy7735 19 KPILFCPAMNTKMWNHPITKSHINTL-KSWGY 49 (120)
Q Consensus 19 ~PvliaPaMn~~M~~~P~~~~nl~~L-~~~G~ 49 (120)
..-+++| ....+||.+++=|++- +++|+
T Consensus 52 ~kRFVVP---v~yL~hP~F~~LL~~AeEEfGf 80 (105)
T PLN03220 52 KKRFVVP---ISFLNHPSFKEFLSRAEEEFGF 80 (105)
T ss_pred ceEEEEE---HHHcCChHHHHHHHHHHHHhCC
Confidence 4567778 8899999999999988 56886
No 102
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=20.37 E-value=1.8e+02 Score=23.64 Aligned_cols=52 Identities=15% Similarity=0.176 Sum_probs=32.6
Q ss_pred CCcchHHHHHHHhccCCCCEEEEecCChhhhhChHHHHH-HHHHHhCCcEEecC
Q psy7735 2 GLCDNLLTCILRAWDFSKPILFCPAMNTKMWNHPITKSH-INTLKSWGYEEIPC 54 (120)
Q Consensus 2 GiaDnllt~~~~a~~~~~PvliaPaMn~~M~~~P~~~~n-l~~L~~~G~~vi~P 54 (120)
|+.|.-...+-.+. .+.|++++|.|.--+.---.+.+. -+.|..|.+.|||-
T Consensus 102 Gf~~e~~~~l~~~a-~~v~vv~a~NfSiGvnll~~l~~~aak~l~~~DiEIiE~ 154 (266)
T COG0289 102 GFTEEQLEKLREAA-EKVPVVIAPNFSLGVNLLFKLAEQAAKVLDDYDIEIIEA 154 (266)
T ss_pred CCCHHHHHHHHHHH-hhCCEEEeccchHHHHHHHHHHHHHHHhcCCCCEEehhh
Confidence 56666655553333 369999999998766544333333 34446677888753
No 103
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=20.32 E-value=1.7e+02 Score=22.94 Aligned_cols=58 Identities=9% Similarity=0.114 Sum_probs=32.4
Q ss_pred HHHHhccCCCCEEEEecCChhhhhChHHHHHHHHHHhCCcEEe-cCCCCccccCCCCCCCCCChhhHHhccccCc
Q psy7735 10 CILRAWDFSKPILFCPAMNTKMWNHPITKSHINTLKSWGYEEI-PCVSKTLMCGDTGLGAMAEVDTIKYGFVPNT 83 (120)
Q Consensus 10 ~~~~a~~~~~PvliaPaMn~~M~~~P~~~~nl~~L~~~G~~vi-~P~~g~lacg~~G~g~m~~~~~I~~~v~~~~ 83 (120)
++++|...++|+++.|.-.. .+.....|.+.+.+.|.-++ +|.. + +++++.+.+.+.+
T Consensus 264 ~~~Ea~~~g~Pvv~~~~~~~---~~~~~~~~~~~i~~~~~g~~~~~~~------------~-~~~~l~~~i~~ll 322 (357)
T PRK00726 264 TVAELAAAGLPAILVPLPHA---ADDHQTANARALVDAGAALLIPQSD------------L-TPEKLAEKLLELL 322 (357)
T ss_pred HHHHHHHhCCCEEEecCCCC---CcCcHHHHHHHHHHCCCEEEEEccc------------C-CHHHHHHHHHHHH
Confidence 44566666999999984210 11112234556666665433 2221 2 5788888887655
No 104
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=20.27 E-value=5e+02 Score=21.41 Aligned_cols=21 Identities=14% Similarity=0.115 Sum_probs=16.3
Q ss_pred cceeeecCCcHHHHHHHHHHHH
Q psy7735 93 PNNFVDNNAGITEYSLTGFLYF 114 (120)
Q Consensus 93 ~vR~isN~SG~mg~~ia~~~~~ 114 (120)
+|=+|| +||-++++++..+..
T Consensus 171 ~VgiVS-qSGtl~~ei~~~~~~ 191 (317)
T PTZ00187 171 KIGIVS-RSGTLTYEAVAQTTA 191 (317)
T ss_pred CEEEEe-CCHHHHHHHHHHHHH
Confidence 466777 899999998877654
No 105
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=20.21 E-value=83 Score=23.35 Aligned_cols=28 Identities=21% Similarity=0.550 Sum_probs=22.1
Q ss_pred EecCChhhhhChHHHHHHHHHHhCCcEEe
Q psy7735 24 CPAMNTKMWNHPITKSHINTLKSWGYEEI 52 (120)
Q Consensus 24 aPaMn~~M~~~P~~~~nl~~L~~~G~~vi 52 (120)
.|.+... |.||-+.+-..++++.|+.++
T Consensus 20 ~~~~G~d-~~h~g~~~l~~~i~~~GY~il 47 (157)
T PF08235_consen 20 LPILGKD-WTHPGAAELYRKIADNGYKIL 47 (157)
T ss_pred hhccCch-hhhhcHHHHHHHHHHCCeEEE
Confidence 4556666 888888888888888888875
No 106
>PHA02857 monoglyceride lipase; Provisional
Probab=20.10 E-value=3.7e+02 Score=19.92 Aligned_cols=35 Identities=11% Similarity=0.111 Sum_probs=21.5
Q ss_pred CCCEEEE-ecCChhhhhChHHHHHHHHHHhCCcEEecCC
Q psy7735 18 SKPILFC-PAMNTKMWNHPITKSHINTLKSWGYEEIPCV 55 (120)
Q Consensus 18 ~~Pvlia-PaMn~~M~~~P~~~~nl~~L~~~G~~vi~P~ 55 (120)
.+|++++ +.... .+-.++..++.|.+.|+.++.++
T Consensus 24 ~~~~v~llHG~~~---~~~~~~~~~~~l~~~g~~via~D 59 (276)
T PHA02857 24 PKALVFISHGAGE---HSGRYEELAENISSLGILVFSHD 59 (276)
T ss_pred CCEEEEEeCCCcc---ccchHHHHHHHHHhCCCEEEEcc
Confidence 4566666 65432 23334555677877899988655
Done!